Q13547 | Histone deacetylase 1   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_O Q13547 31 KPHRIRMTHNLLLNY                 CCHHHHHHHHHHHHC c1b-AT-4 uniq 0.011 0.024 0.238 ORD MID|HDAC1; 0.0
2 fp_O Q13547 39 HNLLLNYGLYRKMEIYR                   HHHHHHCCCCCCCCCCC c1c-4 uniq 0.01 0.023 0.171 ORD MID|HDAC1; 0.0
3 fp_O Q13547 110 CQLSTGGSVASAVKLNK                   HHHCCCCHHHHHHHHHC c1c-AT-4 uniq 0.022 0.031 0.185 ORD MID|HDAC1; 0.0
4 cand_O Q13547 146 EASGFCYVNDIVLAI             *   CCCCCCHHHHHHHHH c1b-4 multi 0.013 0.035 0.047 ORD MID|HDAC1; 0.0
5 cand_O Q13547 149 GFCYVNDIVLAILELLK          *  *  *  CCCHHHHHHHHHHHHHH c1c-5 multi-selected 0.011 0.011 0.025 ORD MID|HDAC1; 0.0
6 cand_O Q13547 149 GFCYVNDIVLAILE          *  *  CCCHHHHHHHHHHH c3-4 multi-selected 0.011 0.012 0.027 ORD MID|HDAC1; 0.0
7 cand_O Q13547 152 YVNDIVLAILELLK       *  *  *  HHHHHHHHHHHHHH c2-5 multi-selected 0.01 0.006 0.018 ORD MID|HDAC1; 0.0
8 cand_O Q13547 152 YVNDIVLAILELLK       *  *  *  HHHHHHHHHHHHHH c3-4 multi-selected 0.01 0.006 0.018 ORD MID|HDAC1; 0.0
9 fp_O Q13547 183 VEEAFYTTDRVMTVSF                  CCHHHCCCCCEEEEEC c1d-AT-4 multi 0.01 0.026 0.139 ORD MID|HDAC1; 0.143
10 fp_O Q13547 185 EAFYTTDRVMTVSFHK                  HHHCCCCCEEEEECCC c1a-AT-4 multi-selected 0.01 0.025 0.136 ORD MID|HDAC1; 0.429
11 fp_beta_O Q13547 186 AFYTTDRVMTVSFHK                 HHCCCCCEEEEECCC c1b-AT-5 multi 0.01 0.024 0.131 ORD MID|HDAC1; 0.571
12 fp_O Q13547 237 YEAIFKPVMSKVMEMFQ                   HHHHHHHHHHHHHHHCC c1c-4 multi-selected 0.015 0.014 0.091 ORD MID|HDAC1; 0.0
13 fp_O Q13547 240 IFKPVMSKVMEMFQ                HHHHHHHHHHHHCC c3-4 multi-selected 0.016 0.012 0.079 ORD MID|HDAC1; 0.0
14 fp_O Q13547 248 VMEMFQPSAVVLQC                HHHHCCCCCEEECC c3-AT uniq 0.01 0.009 0.102 ORD MID|HDAC1; 0.143
15 fp_O Q13547 274 FNLTIKGHAKCVEFVK                  CCCCCHHHHHHHHHHH c1a-AT-4 uniq 0.012 0.016 0.06 ORD MID|HDAC1; 0.0
16 fp_O Q13547 281 HAKCVEFVKSFNLPM                 HHHHHHHHHHCCCCE c1b-4 multi-selected 0.012 0.012 0.052 ORD MID|HDAC1; 0.0
17 fp_O Q13547 283 KCVEFVKSFNLPMLMLG                   HHHHHHHHCCCCEEEEC c1cR-5 multi 0.012 0.012 0.064 ORD MID|HDAC1; 0.0
18 fp_O Q13547 287 FVKSFNLPMLMLGG                HHHHCCCCEEEECC c3-4 multi-selected 0.013 0.013 0.072 ORD MID|HDAC1; 0.286
19 fp_D Q13547 358 YLEKIKQRLFENLRMLP                   HHHHHHHHHHHHHCCCC c1c-5 uniq 0.012 0.169 0.427 DISO boundary|HDAC1; 0.0
20 fp_D Q13547 468 EKPEAKGVKEEVKLAX                  CCCCCCCCCCCCCCC c1d-AT-4 uniq 0.967 0.943 0.712 DISO 0.0

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment