Q17RY0 | Cytoplasmic polyadenylation element-binding protein 4   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 fp_D Q17RY0 203 GALLFQNFPHHVSPGF                  CCCCCCCCCCCCCCCC c1aR-4 uniq 0.627 0.886 0.546 DISO 0.0
2 fp_D Q17RY0 267 AFNQLPHLANNLNK                CCCCCCCCCCCCCC c3-AT uniq 0.914 0.936 0.646 DISO 0.0
3 cand_D Q17RY0 379 RTFDMHSLESSLIDIM .......*...*.... CCCCCCCCHHHHHHHH c1aR-5 multi-selected 0.768 0.656 0.433 DISO 0.0
4 cand_D Q17RY0 382 DMHSLESSLIDIMR ....*...*..... CCCCCHHHHHHHHC c3-4 multi-selected 0.744 0.654 0.43 DISO 0.0
5 fp_D Q17RY0 484 DEDEITASFRRFGPLIVD                    CHHHHHHHHCCCCCEEEE c4-4 uniq 0.014 0.032 0.277 boundary boundary|RRM1_CPEB2_like; 0.0
6 fp_D Q17RY0 583 FVGGVPRPLRAVELAM                  EECCCCCCCCHHHHHH c1a-5 multi-selected 0.023 0.032 0.148 boundary boundary|RRM1_CPEB2_like; boundary|RRM2_CPEB2_like; 0.0
7 fp_D Q17RY0 587 VPRPLRAVELAMIMDR                  CCCCCCHHHHHHHHHH c1d-4 multi 0.02 0.027 0.085 boundary boundary|RRM1_CPEB2_like; boundary|RRM2_CPEB2_like; 0.0
8 fp_D Q17RY0 587 VPRPLRAVELAMIM                CCCCCCHHHHHHHH c2-AT-4 multi 0.021 0.029 0.095 boundary boundary|RRM1_CPEB2_like; boundary|RRM2_CPEB2_like; 0.0
9 fp_D Q17RY0 592 RAVELAMIMDRLYGGV                  CHHHHHHHHHHHCCCE c1aR-4 multi-selected 0.012 0.016 0.06 boundary boundary|RRM1_CPEB2_like; boundary|RRM2_CPEB2_like; 0.0
10 fp_D Q17RY0 596 LAMIMDRLYGGVCYAG                  HHHHHHHHCCCEEEEE c1aR-4 multi-selected 0.01 0.01 0.057 boundary boundary|RRM1_CPEB2_like; boundary|RRM2_CPEB2_like; 0.0
11 fp_D Q17RY0 635 YIAAISARFVQLQH                HHHHHHHCCEECCC c2-AT-5 multi 0.019 0.03 0.118 boundary boundary|RRM2_CPEB2_like; boundary|CEBP_ZZ; 0.143
12 fp_D Q17RY0 635 YIAAISARFVQLQH                HHHHHHHCCEECCC c3-4 multi-selected 0.019 0.03 0.118 boundary boundary|RRM2_CPEB2_like; boundary|CEBP_ZZ; 0.143

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment