Q68SB1-2 | Double-stranded RNA-binding protein Staufen homolog 2 Isoform 2 (SL)   proviz   swissmodel

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)


# candidates id start# sequence secondary class multi-pattern diso spotd iup loc_DISO loc_CDD beta
1 cand_beta_D Q68SB1-2 1 XMLQINQMFSVQLSLGE     +++++++++++   CCCCCCEEEEEEEECCE c1c-5-Nt multi-selected 0.206 0.197 0.321 boundary 0.75
2 cand_beta_D Q68SB1-2 1 XMLQINQMFSVQLSL     +++++++++++ CCCCCCEEEEEEEEC c1b-5-Nt multi 0.227 0.212 0.313 boundary 0.714
3 fp_D Q68SB1-2 61 SITPTVELNGLAMKR                 CCCCCHHHHHHHHHC c1b-AT-5 multi 0.59 0.492 0.588 DISO boundary|DSRM; 0.0
4 fp_D Q68SB1-2 62 ITPTVELNGLAMKR                CCCCHHHHHHHHHC c2-4 multi-selected 0.569 0.481 0.579 DISO boundary|DSRM; 0.0
5 fp_beta_D Q68SB1-2 106 YHCPMPKIFYVQLTVGN                   CCCCCCCEEEEEEEEEE c1c-4 multi-selected 0.089 0.058 0.264 boundary MID|DSRM; 0.625
6 fp_beta_D Q68SB1-2 106 YHCPMPKIFYVQLTV                 CCCCCCCEEEEEEEE c1b-4 multi 0.097 0.061 0.257 boundary MID|DSRM; 0.571
7 fp_beta_D Q68SB1-2 109 PMPKIFYVQLTV              CCCCEEEEEEEE c2-rev multi-selected 0.066 0.038 0.27 boundary MID|DSRM; 0.833
8 fp_D Q68SB1-2 173 NKSEISLVFEIALKR                 CCCHHHHHHHHHHHC c1b-4 multi-selected 0.085 0.126 0.305 boundary boundary|DSRM; boundary|DSRM; 0.0
9 fp_D Q68SB1-2 177 ISLVFEIALKRNMPVSF                   HHHHHHHHHHCCCCCEE c1cR-4 multi-selected 0.026 0.07 0.283 boundary boundary|DSRM; boundary|DSRM; 0.0
10 fp_beta_D Q68SB1-2 200 GPPHMKSFVTRVSVGE                  CCCCCCEEEEEEEECC c1a-4 multi-selected 0.021 0.054 0.461 boundary MID|DSRM; 0.714
11 fp_beta_D Q68SB1-2 200 GPPHMKSFVTRVSVGE                  CCCCCCEEEEEEEECC c1d-4 multi 0.021 0.054 0.461 boundary MID|DSRM; 0.714
12 fp_beta_D Q68SB1-2 306 REFVMQVKVGNEVATGT                   CCEEEEEEECCEEEEEE c1cR-4 uniq 0.042 0.093 0.567 boundary boundary|DSRM; 0.75
13 fp_beta_D Q68SB1-2 474 RIQGFQAALSALKQ                HHCCCEEEECCCCC c3-4 multi-selected 0.031 0.098 0.317 boundary boundary|Staufen_C superfamily; 0.571
14 fp_D Q68SB1-2 477 GFQAALSALKQFSE                CCEEEECCCCCCCC c3-AT multi 0.036 0.122 0.328 boundary boundary|Staufen_C superfamily; 0.429
15 fp_D Q68SB1-2 489 SEQGLESIDGVVNVEN                  CCCCCEECCCCCCCCC c1d-4 uniq 0.119 0.311 0.472 boundary boundary|Staufen_C superfamily; 0.286

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment