Q88935 | N protein

Q88935 | nucleocapsid protein (Nucleocapsid protein) (N protein) (ORF7) proviz swissmodel

Reference DB: NESdb:118
Species: Porcine reproductive and respiratory syndrome virus (PRRSV)
Evidence: LMB Sensitive, Binds CRM1
Mutation(export): Unknown
Mutation(bind): Unknown
Functional seq: 90CTLSDSGRISYTVEFSLPTHHTVRLIRVTASPSA123
Sites: -

*Experimental: mutation (blue); functional region (cyan); located in the long functional sequence (lightblue)
*NES patterns: region with experimental evidence (red-orange-yellow); false positive region (gray)

#	candidates	id	start#	sequence	secondary	class	multi-pattern	diso	spotd	iup	loc_DISO	loc_CDD	beta
1	fp_D	Q88935	18	PVNQLCQMLGKIIA	CHHHHHHHHHHHHH	c3-4	uniq	0.079	0.208	0.55	DISO	boundary\|Arteri_nucleo;	0.0
2	fp_D	Q88935	72	RQLCLSSIQTAFNQGA	HHHHHHHHHHHHHCCC	c1aR-4	uniq	0.017	0.078	0.439	boundary	MID\|Arteri_nucleo;	0.0
3	fp_beta_D	Q88935	94	DSGRISYTVEFSLPT ...............	CCCCEEEEEEEEEEC	c1b-AT-4	uniq	0.022	0.064	0.413	boundary	boundary\|Arteri_nucleo;	1.0
4	fp_beta_D	Q88935	100	YTVEFSLPTHHTVRLIR .................	EEEEEEEECCCEEEEEE	c1c-AT-4	multi-selected	0.025	0.061	0.454	boundary	boundary\|Arteri_nucleo;	0.625
5	fp_beta_D	Q88935	104	FSLPTHHTVRLIRVTA ................	EEEECCCEEEEEEEEC	c1a-AT-4	multi-selected	0.087	0.104	0.47	boundary	boundary\|Arteri_nucleo;	0.571

*candidates: NES candidates and false positives annotated with "cand" and "fp", respectively;
                if the segment is located in the disordered or boundary region, flagged with "D"; if the segment is located in the ordered region, flagged with "O";
                if the segment's beta-strand content is over 0.5, flagged with "beta".
*sequence: Hydrophobic positions are colored in red. The positions with the experimental evidence is marked with '*' (mutation) and '+' (functional sequence in NESdb or sites in validNES).
                The positions with '.' are for the region annotated in the long (more than 25 residues) functional sequence or site.
*multi-pattern: the consensus pattern is unique or multiple within the region (if the start# difference is less than 5, the segments are considered to be the same region)
*diso: average DISOPRED3-predicted disorder propensity for the segment
*spotd: average SPOT-Disorder-predicted disorder propensity for the segment
*iup: average IUPRED2A-predicted disorder propensity for the segment
*loc_DISO: location of the segment with respect to the ordered/disordered regions
*loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
*beta: beta-strand content in the middle of the segment