1. Example: a single sequence
An example of FASTA format protein sequence: >gi|17987990|ref|NP_540624.1| mandelate racemase [Brucella melitensis bv. 1 str. 16M] MTKITDLRVFDLRFPTSQSLDGSDAMNPDPDYSAAYVILDTDDEALKGHGLTFTIGRGNDICCHAILAMR HLVVGASLDEIRAAPGKFWHHLTGDSQLRWIGPEKGAMHLATGAVVNAIWDLLAKQAGKPVWRLVSELSP EEIADIVDYRYLTDVLTRDEAIEILRKAESGKAERIATLEAEGYACYTTSAGWLGYDDAKLRRLCQEAID EGFNHVKMKVGHDLEDDIRRLTIAREVIGPDRYLMIDANQVWEVDQAIEWVRRLAFANPFFIEEPTSPDD VAGHRKIRAAIGPVKVATGEMCQNRIMFKQFIAEGAIDVVQIDSCRMGGLNEVLAVLLMAAKYDLPVWPH AGGVGLCEYVQHLSMIDYVAVSGTKEGRVIEYVDHLHEHFLDPCIIRNAAYMPPSLPGFSIEMKPQSIAQ YAFKG An example of output interface using the input sequence listed above: http://prodata.swmed.edu/wenlin/server/pclust/index.cgi/result/single/SGLZ2KKbA2. Example: multiple sequences
An example of FASTA format protein sequences:>gi|17987990|ref|NP_540624.1| mandelate racemase [Brucella melitensis bv. 1 str. 16M] MTKITDLRVFDLRFPTSQSLDGSDAMNPDPDYSAAYVILDTDDEALKGHGLTFTIGRGNDICCHAILAMR HLVVGASLDEIRAAPGKFWHHLTGDSQLRWIGPEKGAMHLATGAVVNAIWDLLAKQAGKPVWRLVSELSP EEIADIVDYRYLTDVLTRDEAIEILRKAESGKAERIATLEAEGYACYTTSAGWLGYDDAKLRRLCQEAID EGFNHVKMKVGHDLEDDIRRLTIAREVIGPDRYLMIDANQVWEVDQAIEWVRRLAFANPFFIEEPTSPDD VAGHRKIRAAIGPVKVATGEMCQNRIMFKQFIAEGAIDVVQIDSCRMGGLNEVLAVLLMAAKYDLPVWPH AGGVGLCEYVQHLSMIDYVAVSGTKEGRVIEYVDHLHEHFLDPCIIRNAAYMPPSLPGFSIEMKPQSIAQ YAFKG >gi|122920481|pdb|2HXU|A Chain A, Crystal Structure Of K220a Mutant Of L-Fuconate Dehydratase From Xanthomonas Campestris Liganded With Mg++ And L-Fuconate MRTIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGNDVQTAAVAAL AEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAELT PEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAV ADGFRTIKLAVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIEEPTSPD DVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFP HAGGVGLCELVQHLAMADFVAITGKMEDRAIEFVDHLHQHFLDPVRIQHGRYLAPEVPGFSAEMHPASIA EFSYPDGRFWVEDLAASKAKA >gi|15890855|ref|NP_356527.1| mandelate racemase [Agrobacterium fabrum str. C58] MKITAVEPFILHLPLTSESISDSTHSITHWGVVGAKITTSDGIEGYGFTGTHAHLPSDRLITSCISDCYA PLLLGEDASDHSRLWTKLARYPSLQWVGRAGITHLALAAVDVALWDIKAKKAGVPLWHYLGGARTAGVEA YNTDIGWLSFTLEDLLAGSARAVEEDGFTRLKIKVGHDDPNIDIARLTAVRERVDSAVRIAIDGNGKWDL PTCQRFCAAAKDLDIYWFEEPLWYDDVTSHARLARNTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVT RLGGITEYIQVADLALAHRLPVVPHAGEMSQVHVHLSYWHPASTILEYIPWIKDHFEEPIHVRDGVYKRP EQPGASTTPLAESFTRYGKAVK >gi|76886462|gb|ABA60340.1| L-galactonate dehydratase [Trichoderma reesei] MSEVTITGFRSRDVRFPTSLDKTGSDAMNAAGDYSAAYCILETDSAHSGHGMTFTIGRGNDIVCAAINHV ADRLKGKKLSSLVADWGKTWRYLVNDSQLRWIGPEKGVIHLALGAVVNAVWDLWAKTLNKPVWRIVADMT PEEYVRCIDFRYITDAITPEEAVAMLREQEAGKAKRIEEALQNRAVPAYTTSAGWLGYGEDKMKQLLRET LAAGYRHFKVKVGGSVEEDRRRLGIAREILGFDKGNVLMVDANQVWSVPEAIDYMKQLSEYKPWFIEEPT SPDDIMGHKAIRDALKPYGIGVATGEMCQNRVMFKQLIMTGAIDICQIDACRLGGVNEVLAVLLMAKKYG VPIVPHSGGVGLPEYTQHLSTIDYVVVSGKLSVLEFVDHLHEHFLHPSVIKDGYYQTPTEAGYSVEMKPE SMDKYEYPGKKGVSWWTTDEALPILNGEKI >gi|197101351|ref|NP_001125659.1| mitochondrial enolase superfamily member 1 [Pongo abelii] MVRGRIFRLSVRDVRFPTSLGGHGSDAMHTDPDYSAAYVVIETDAEDGIKGCGITFTLGKGTEVVVCAVN ALAHHVLNKDLKDIVGDFRGFYRQLTSDGQPRWIGPEKGVVHLATAAVLNAVWDLWAKQEGKPVWKLLVD MDPRTLVSCIDFRYITDVLTEEDALEILQKGQVGKKEREKQMLAQGYPAYTTSCAWLGYSDDTLKQLCAQ ALKDGWTRFKVKVGADLQDDVRRCQIIRDMIGLEKTLMMDANQRWDVPEAVEWMSKLAKFKPLWIEEPTS PDDILGHATISKALVPLGIGIATGEQCHNRVIFKQLLQAKALQFLQIDSCRLGSVNENLSVLLMAKKFEI PVCPHAGGVGLCELVQHLIIFDYISVSASLENRMCEYVDHLHEHFKYPVMIQRASYMPPKDPGYSTEMKE ESVKKHQYPDGEVWKKLLAAQEN >gi|251797209|ref|YP_003011940.1| mandelate racemase/muconate lactonizing protein [Paenibacillus sp. JDR-2] MKITKVESFVLHVPITPPITDAINVATHWGLSGVRIYTDEGFIGYGYTGTCAHGDDMIVDTIDKYYAPLL VGKDPFMVKELWNEMRFGKMHWIGRSGVTHMALAAVDIALWDIMSKASNKPLWQYLGGAKSKPIKAYNTN GGWLNWSKERLLKDVTEIVESGFTGVKIKVGKPDPREDYDRCKAVRKAIGDDVIFMIDVNQQWNINTAMT WGKKLEEFDLFWLEEPLNPDDIMGHKKLADELNVPIALGEHVYNKYAFRDYIHNGALEYCQVDATRVAGI TEWLQVAGLAASYDVPVCPHVGDMGQIHQHLVASTPSAIMLEYIPWIRHIFEEPATVKDGHYVLPQMPGA STTILPRYFDEYRIR >gi|330816880|ref|YP_004360585.1| mandelate racemase/muconate lactonizing enzyme family protein [Burkholderia gladioli BSR3] MTIIRSMRVLDVRFPTSQKLDGSDAMNPDPDYSAAYVILETDRDGLEGHGLTFTIGRGNEICCAAIEAMR HLVVGLDLDWIREDMGRFWRHVTSDSQLRWIGPDKGAIHLATGAVVNAAWDLWAKAEGKPLWRLVADLTP EQLVRTIDFRYLGDCLSESDALELLRKQAPGKAERIATLEREGYPCYTTSAGWLGYSDDKLRRLCREAID AGFDHVKLKVGANLEDDIRRVTIAREVIGPDRKLMIDANQVWEVDEAIDWVRELAFAKPWFIEEPTSPDD VEGHRKIREAIGPVQVATGEMCQNRVLFKQFIMRGAIDVVQIDACRLGGVNEILAVMLMAAKYGLPVCPH AGGVGLCEYVQHLSMIDYVAIAGTREGRVIEYVDHLHEHFVEPCVVRDAAYMPPSAPGFSIEMKPESLER YRFRAETARSGESLDPAAAVAHAAAAn example of output interface using the input sequence listed above: http://prodata.swmed.edu/wenlin/server/pclust/index.cgi/result/MS/MS_5N6SMr3. Example: Seq2Ref result link
An example of Seq2Ref result link: http://prodata.swmed.edu/wenlin/server/user_data/seq2ref/S2RGsaCMG/result.html An example of output interface using the input sequence listed above: http://prodata.swmed.edu/wenlin/server/pclust/index.cgi/result/S2R/PC_GsaCMG4. Example: visualization of a network using Customized data
An example of customized data: GI1 GI2 link notes(optional) 80193 16767126 1e-3 this is a pseudo-link 25478(sp|YIDD_SALTI) 2323 1e-30 all the GI numbers are imaginary. 80193 2323(sp|P61472|pdb|2onk) 1e-11 here is an example for multiple notes for nodes 2323 25478(pdb|1ky2) 1e-22 example: 25478 will get info both from the 2nd record and here An example of output interface using the input sequence listed above: http://prodata.swmed.edu/wenlin/server/pclust/index.cgi/result/VSN/VSN2w4B5J