COLORED alignment     
(with predicted secondary struture and conservation information)

• sequence order:   input      aligned
• block size: or show each sequence in one line
  
• show starting and ending residue numbers:  
• show conservation indices equal to or above:   0 1 2 3 4 5 6 7 8 9
  
• consensus level:

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CLUSTAL format alignment     

• sequence order:   input      aligned
• block size: or show each sequence in one line
  

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FASTA format alignment     

• sequence order:   input      aligned

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Information about alignment formats is here.

Inputs and intermediate results

Input sequences: none

Input structures are here.

PSI-BLAST and PSIPRED results are here.

The guide tree (based on a crude distance measure) for some sequences is here.