Viral protein families, which contain Rossmann-like fold

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Main page of Rossmann-fold project

Grishin Lab

ECOD
# Virus family Baltimore classification ECOD F-group ID ECOD F-groups name Representative PDB Representative domain Pfam EC number Organism name Host range Protein name BLAST distribution plot BLAST hits kingdoms
1 Arteriviridae (+)ssRNA 2003.1.5.297 DUF3470_like 5da1 e5da1A2 n/a n/a Porcine reproductive and respiratory syndrome virus pigs PRRSV NSP11 e5da1A2 V
2 Arteriviridae (+)ssRNA 2004.1.1.182 DEAD_4 4n0o e4n0oG2 PF01443 3.6.4.12 3.6.4.13 Equine arteritis virus horses Arterivirus nonstructural protein 10 (helicase) e4n0oG2 BEV
3 Arteriviridae (+)ssRNA 2004.1.1.508 UvrD_C_2_1 4n0o e4n0oG3 PF01443 3.6.4.12 3.6.4.13 Equine arteritis virus horses Arterivirus nonstructural protein 10 (helicase) e4n0oG3 BEV
4 Coronaviridae (+)ssRNA 3230.1.1.1 EUF08548 3ld1 e3ld1A1 n/a 3.4.22 Avian coronavirus chikens IBV Nsp2a e3ld1A1 V
5 Coronaviridae (+)ssRNA 2007.5.1.10 Hema_esterase_1st 3i26 e3i26B3 PF03996 3.1.1.53 Bovine torovirus vertebrates bovine torovirus Hemagglutinin-Esterase e3i26B3 V
6 Coronaviridae (+)ssRNA 2003.1.5.58 NSP13 2xyv e2xyvA1 PF06460 2.1.1 Severe acute respiratory syndrome-related coronavirus human nsp16 nsp10 SARS coronavirus complex e2xyvA1 V
7 Coronaviridae (+)ssRNA 2003.1.5.57 NSP11_2nd 2h85 e2h85A2 PF06471 n/a Severe acute respiratory syndrome-related coronavirus human Nsp 15 from SARS e2h85A2 V
8 Coronaviridae (+)ssRNA 2111.27.1.7 EUF08627 2w2g e2w2gB1 PF11633 3.4.22 Severe acute respiratory syndrome-related coronavirus human Human SARS coronavirus e2w2gB1 V
9 Coronaviridae (+)ssRNA 2111.27.1.6 SUD-M 2w2g e2w2gB2 PF11633 3.4.22 Severe acute respiratory syndrome-related coronavirus human Human SARS coronavirus e2w2gB2 V
10 Cystoviridae dsRNA 6034.1.1.1 EUF08649 2q82 e2q82A1 n/a n/a Pseudomonas phage phi12 Bacteria core protein P7 e2q82A1 V
11 Cystoviridae dsRNA 2004.1.1.134 NTPase_P4 1w46 e1w46A1 PF11602 n/a Pseudomonas phage phi12 Bacteria P4 protein from Bacteriophage PHI12 e1w46A1 V
12 Flaviviridae (+)ssRNA 2004.1.1.976 DEAD_3 2zjo e2zjoA2 PF00270 3.4.21.98 Hepacivirus C human hepatitis C virus NS3 helicase e2zjoA2 ABEV
13 Flaviviridae (+)ssRNA 2004.1.1.196 Helicase_C_7 2zjo e2zjoA4 PF00271 3.4.21.98 Hepacivirus C human hepatitis C virus NS3 helicase e2zjoA4 ABEV
14 Flaviviridae (+)ssRNA 3828.1.1.1 Flavi_NS1_N 5k6k e5k6kA2 PF00948 n/a Zika virus human Zika virus non-structural protein 1 (NS1) e5k6kA2 V
15 Flaviviridae (+)ssRNA 2003.1.5.13 FtsJ 4v0r e4v0rA3 PF01728 n/a Dengue virus human DENGUE VIRUS FULL LENGTH NS5 e4v0rA3 ABEV
16 Flaviviridae (+)ssRNA 2004.1.1.93 Flavi_DEAD 2jls e2jlsA2 PF07652 3.4.21.91 Dengue virus human Dengue virus 4 NS3 helicase e2jlsA2 BEV
17 Herpesviridae dsDNA 2004.1.1.108 Herpes_TK 1e2m e1e2mA1 PF00693 2.7.1.21 Human alphaherpesvirus 1 human Herpes Simplex Virus Type 1 Thymidine Kinase e1e2mA1 V
18 Iridoviridae dsDNA 2011.3.1.3 PNP_UDP_1 3khs e3khsD1 PF01048 2.4.2.1 Singapore grouper iridovirus fish grouper iridovirus purine nucleoside phosphorylase e3khsD1 ABEV
19 Megaviridae dsDNA 2003.1.1.54 Polysacc_synt_2_1 4tqg e4tqgA1 PF02719 n/a Megavirus chiliensis amoeba Megavirus UDP-GlcNAc 4,6-dehydratase 5-epimerase e4tqgA1 ABEV
20 Mimiviridae dsDNA 2005.1.1.139 tRNA-synt_1b_1 2j5b e2j5bA1 PF00579 6.1.1.1 Acanthamoeba polyphaga mimivirus amoeba Tyrosyl tRNA synthetase e2j5bA1 ABEV
21 Mimiviridae dsDNA 2003.1.2.286 GMC_oxred_N 4z26 e4z26A3 PF00732 1 Acanthamoeba polyphaga mimivirus amoeba Mimivirus R135 e4z26A3 ABEV
22 Myoviridae dsDNA 2004.1.1.184 P-mevalo_kinase_1 1dek e1dekA1 n/a 2.7.4.13 Escherichia phage T4 Bacteria DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE e1dekA1 BV
23 Myoviridae dsDNA 2111.1.1.89 Glyco_trans_1_2_like 1jg7 e1jg7A1 n/a 2.4.1.27 Escherichia phage T4 Bacteria T4 phage BGT e1jg7A1 V
24 Myoviridae dsDNA 2006.1.1.29 PNK3P 2ia5 e2ia5A2 n/a 2.7.1.78 Escherichia phage T4 Bacteria T4 polynucleotide kinase/phosphatase e2ia5A2 BV
25 Myoviridae dsDNA 2004.1.1.190 Sigma54_activat 3u5z e3u5zE1 n/a n/a Escherichia phage T4 Bacteria T4 Bacteriophage clamp loader e3u5zE1 ABEV
26 Myoviridae dsDNA 2003.1.6.1 Tubulin 3zbq e3zbqA2 n/a n/a Pseudomonas phage phiKZ Bacteria Protofilament of TubZ from Bacteriophage PhiKZ e3zbqA2 BV
27 Myoviridae dsDNA 2111.121.1.1 LytB 4cu5 e4cu5B1 n/a n/a Clostridium phage phiCD27 Bacteria endolysin from phage CD27L e4cu5B1 BV
28 Myoviridae dsDNA 2004.1.1.237 RecA 3io5 e3io5B1 PF00154 n/a Escherichia phage T4 Bacteria uvsX Recombinase core domain e3io5B1 BEV
29 Myoviridae dsDNA 2111.5.1.1 DHFR_1 1juv e1juvA1 PF00186 1.5.1.3 Escherichia phage T4 Bacteria Dihydrofolate reductase e1juvA1 ABEV
30 Myoviridae dsDNA 2111.66.1.2 Resolvase 3uj3 e3uj3X1 PF00239 3.1.22 6.5.1 Escherichia phage Mu Bacteria G-Segment Invertase (Gin) e3uj3X1 ABEV
31 Myoviridae dsDNA 2004.1.1.978 Helicase_C_1 2oca e2ocaA8 PF00271 3.6.4.12 Escherichia phage T4 Bacteria structure of T4 UvsW e2ocaA8 ABEV
32 Myoviridae dsDNA 2003.1.5.18 MethyltransfD12 1yfl e1yflA1 PF02086 2.1.1.72 Escherichia phage T4 Bacteria T4Dam in Complex with Sinefungin e1yflA1 ABEV
33 Myoviridae dsDNA 2006.1.4.1 5_3_exonuc_N 2ihn e2ihnA2 PF02739 3.1.26.4 Escherichia phage T4 Bacteria RNase H e2ihnA2 BEV
34 Myoviridae dsDNA 2499.2.1.3 Phage_sheath_1 3foh e3fohF5 PF04984 n/a Escherichia phage T4 Bacteria gp18M e3fohF5 ABV
35 Myoviridae dsDNA 2111.1.1.32 T4-Gluco-transf 1jg7 e1jg7A2 PF09198 2.4.1.27 Escherichia phage T4 Bacteria T4 phage BGT e1jg7A2 V
36 Myoviridae dsDNA 2111.1.1.234 AGT_C 1y8z e1y8zB1 PF11440 2.4.1.27 Escherichia phage T4 Bacteria alpha-glucosyltransferase e1y8zB1 BV
37 Myoviridae dsDNA 2111.1.1.233 AGT_N 1y8z e1y8zB2 PF11440 2.4.1.26 Escherichia phage T4 Bacteria alpha-glucosyltransferase e1y8zB2 BV
38 Myoviridae dsDNA 2004.1.1.28 AAA_19 3upu e3upuA1 PF13604 3.6.4.12 Escherichia phage T4 Bacteria T4 Phage SF1B Helicase Dda e3upuA1 ABEV
39 Myoviridae dsDNA 2004.1.1.174 UvrD_C_2 3upu e3upuA3 PF13538 3.6.4.12 Escherichia phage T4 Bacteria T4 Phage SF1B Helicase Dda e3upuA3 ABEV
40 Myoviridae dsDNA 2004.1.1.32 AAA_33 2ia5 e2ia5B1 PF13671 2.7.1.78 Escherichia phage T4 Bacteria T4 polynucleotide kinase/phosphatase e2ia5B1 ABEV
41 Parvoviridae ssDNA 2004.1.1.1413 Parvo_NS1 1u0j e1u0jA1 PF01057 3.6.4.12 Adeno-associated dependoparvovirus A vertebrates, insects AAV2 Rep40-ADP complex e1u0jA1 BEV
42 Phycodnaviridae dsDNA 2111.1.1.10 Glycos_transf_1 3oy2 e3oy2A1 n/a n/a Paramecium bursaria Chlorella virus NY2A green algae putative glycosyltransferase e3oy2A1 ABEV
43 Phycodnaviridae dsDNA 2111.1.1.250 Glyco_transf_4_1 3oy2 e3oy2B2 PF13439 n/a Paramecium bursaria Chlorella virus NY2A green algae putative glycosyltransferase e3oy2B2 BEV
44 Phycodnaviridae dsDNA 2111.6.1.13 Glyco_transf_34 2p72 e2p72B1 PF05637 n/a Paramecium bursaria Chlorella virus 1 algae glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1 e2p72B1 BEV
45 Pneumoviridae (-)ssRNA 2003.1.5.392 Methyltrans_Mon_2nd_1 4ucl e4uclB2 PF14314 n/a Human metapneumovirus human Mononegavirales L- protein domain e4uclB2 V
46 Podoviridae dsDNA 2004.1.1.473 COG5410 4bil e4bilD4 n/a 3.1 Escherichia phage T7 Bacteria T7 large terminase e4bilD4 ABV
47 Podoviridae dsDNA 2004.1.1.164 Terminase_3 4iee e4ieeA2 PF04466 n/a Shigella phage Sf6 Bacteria large terminase subunit gp2 of bacterial virus Sf6 e4ieeA2 ABEV
48 Podoviridae dsDNA 2004.1.1.651 Podovirus_Gp16 5hd9 e5hd9A1 PF05894 n/a Bacillus phage phi29 Bacteria N-terminal domain of the DNA packaging ATPase e5hd9A1 BEV
49 Podoviridae dsDNA 2006.1.3.5 Toprim_2 1nui e1nuiA3 PF13155 2.7.7 3.6.4.12 Escherichia phage T7 Bacteria fragment of primase-helicase protein e1nuiA3 ABEV
50 Podoviridae dsDNA 2007.5.1.31 Lipase_GDSL_2 4qnl e4qnlA2 PF13472 n/a Escherichia phage G7C Bacteria tail fiber protein gp63.1 from E. coli phage G7C e4qnlA2 BEV
51 Podoviridae dsDNA 2004.1.1.24 AAA_25 1cr0 e1cr0A2 PF13481 2.7.7 3.6.4.12 Escherichia phage T7 Bacteria HELICASE DOMAIN OF THE GENE4 PROTEIN OF BACTERIOPHAGE T7 e1cr0A2 ABEV
52 Polyomaviridae dsDNA 2004.1.1.139 Polyoma_lg_T_C 1n25 e1n25A1 PF06431 3.6.4 Macaca mulatta polyomavirus 1 Macaca SV40 Large T antigen helicase domain e1n25A1 BV
53 Poxviridae dsDNA 2111.69.1.1 UDG 4lzb e4lzbJ1 n/a 3.2.2.27 Vaccinia virus human uracil DNA glycosylase e4lzbJ1 BV
54 Poxviridae dsDNA 2004.1.1.242 TK_N 2j87 e2j87A3 PF00265 2.7.1.21 Vaccinia virus human vaccinia virus thymidine kinase e2j87A3 ABEV
55 Poxviridae dsDNA 2007.2.3.2 DSPc 3cm3 e3cm3A1 PF00782 3.1.3.48 Vaccinia virus human Vaccinia Virus Dual-Specificity Phosphatase VH1 e3cm3A1 ABEV
56 Poxviridae dsDNA 2003.1.5.60 PARP_regulatory 1v39 e1v39A1 PF01358 2.1.1.57 Vaccinia virus human DC26 MUTANT OF VACCINIA VIRUS PROTEIN VP39 e1v39A1 EV
57 Poxviridae dsDNA 2004.1.1.166 Thymidylate_kin 2v54 e2v54B1 PF02223 2.7.4.9 Vaccinia virus human vaccinia virus thymidylate kinase e2v54B1 ABEV
58 Poxviridae dsDNA 2111.6.1.57 Pox_P35 5ej0 e5ej0A1 PF03213 n/a Vaccinia virus human H3 envelope protein e5ej0A1 V
59 Poxviridae dsDNA 2003.1.5.30 Methyltransf_11_3 4cke e4ckeD2 PF03291 2.1.1.56 2.7.7.50 3.1.3.33 Vaccinia virus human Vaccinia virus capping enzyme e4ckeD2 EV
60 Poxviridae dsDNA 2003.1.5.63 Pox_mRNA-cap 4cke e4ckeE1 PF03341 n/a Vaccinia virus human Vaccinia virus capping enzyme e4ckeE1 V
61 Reoviridae dsRNA 2003.1.5.81 EUF08594 3jay e3jayA3 n/a n/a Bombyx mori cytoplasmic polyhedrosis virus insects cytoplasmic polyhedrosis virus e3jayA3 V
62 Reoviridae dsRNA 2003.1.5.82 EUF08595 3jay e3jayA4 n/a n/a Bombyx mori cytoplasmic polyhedrosis virus insects cytoplasmic polyhedrosis virus e3jayA4 V
63 Reoviridae dsRNA 2004.1.1.560 AAA_33_like 3jb6 e3jb6B1 n/a 2.7.7.48 Bombyx mori cytoplasmic polyhedrosis virus insects RNA polymerase complex e3jb6B1 V
64 Reoviridae dsRNA 2007.16.1.1 VP7_1st 4v7q e4v7qBK2 PF00434 n/a Rotavirus A human model of an infectious rotavirus particle e4v7qBK2 V
65 Reoviridae dsRNA 2003.1.5.99 Orbi_VP4_3rd 2jhc e2jhcA2 PF05059 n/a Bluetongue virus Ruminants bluetongue virus VP4 e2jhcA2 V
66 Reoviridae dsRNA 2004.7.1.1 Orbi_VP4_1st 2jhc e2jhcA3 PF05059 n/a Bluetongue virus Ruminants bluetongue virus VP4 e2jhcA3 V
67 Reoviridae dsRNA 2003.1.5.94 Orbi_VP4_2nd 2jhc e2jhcA5 PF05059 n/a Bluetongue virus Ruminants bluetongue virus VP4 e2jhcA5 V
68 Reoviridae dsRNA 2003.1.5.101 Reovirus_L2_5th 3k1q e3k1qA10 PF06016 n/a Aquareovirus C Fish, shellfish, and crustacean species aquareovirus virion e3k1qA10 V
69 Reoviridae dsRNA 2003.1.5.96 Reovirus_L2_3rd 3k1q e3k1qA12 PF06016 n/a Aquareovirus C Fish, shellfish, and crustacean species aquareovirus virion e3k1qA12 V
70 Rhabdoviridae (-)ssRNA 2003.1.5.388 Methyltrans_Mon_2nd 5a22 e5a22A6 PF14314 2.7.7.6 Vesicular stomatitis virus human L protein of vesicular stomatitis virus e5a22A6 V
71 Siphoviridae dsDNA 2111.121.1.2 CW_binding_2 4cu2 e4cu2A1 n/a n/a Clostridium phage phiCTP1 Bacteria CTP1L endolysin e4cu2A1 BV
72 Siphoviridae dsDNA 2111.78.1.14 Cutinase 3hc7 e3hc7A1 PF01083 n/a Mycobacterium phage D29 Bacteria lysin B e3hc7A1 BEV
73 Siphoviridae dsDNA 2011.1.1.1 Amidase_3 1xov e1xovA2 PF01520 3.5.1.28 Listeria phage PSA Bacteria listeria monocytogenes bacteriophage PSA endolysin PlyPSA e1xovA2 ABEV
74 Siphoviridae dsDNA 2004.1.1.240 Terminase_6 4znl e4znlC1 PF03237 n/a Thermus phage P74-26 Bacteria Thermus Phage P74-26 Large Terminase ATPase domain e4znlC1 ABEV
75 Siphoviridae dsDNA 2004.1.1.76 DnaB_C 3bgw e3bgwF1 PF03796 n/a Bacillus phage SPP1 Bacteria DnaB-Like Replicative Helicase e3bgwF1 BEV
76 Togaviridae (+)ssRNA 2111.27.1.2 Macro_3 4gua e4guaA3 PF01661 2.1.1 2.7.7 2.7.7.48 3.1.3.33 3.4.22 3.6.1.15 3.6.4.13 Sindbis virus human Alphavirus P23pro-zbd e4guaA3 ABEV
77 Togaviridae (+)ssRNA 2003.1.5.85 FtsJ_1 4gua e4guaA2 PF06460 2.1.1 2.7.7 2.7.7.48 3.1.3.33 3.4.22 3.6.1.15 3.6.4.13 Sindbis virus human Alphavirus P23pro-zbd e4guaA2 V
78 Turriviridae dsDNA 2111.6.1.28 EUF08621 2c0n e2c0nA1 n/a n/a Sulfolobus turreted icosahedral virus 1 Archaea A197 from STIV e2c0nA1 ABV
79 Turriviridae dsDNA 2004.1.1.20 AAA_22_like 4r2i e4r2iA1 PF05707 n/a Sulfolobus turreted icosahedral virus 1 Archaea STIV B204 e4r2iA1 ABV
80 Turriviridae dsDNA 4259.1.1.1 DUF1874 2j85 e2j85A1 PF08960 n/a Sulfolobus islandicus rod-shaped virus 1 Archaea STIV B116 e2j85A1 ABV
81 Virgaviridae (+)ssRNA 2004.1.1.509 Viral_helicase1 3vkw e3vkwA2 PF01443 2.1.1 2.7.7 2.7.7.48 3.6.4.13 Tomato mosaic virus plants, horses Helicase from Tomato Mosaic Virus e3vkwA2 BEV