List of the counted superfamily hits for pattern ID: 9 (enumeration index: query22) of S3

List of the counted superfamily hits for pattern ID: 9 (enumeration index: query22) of S3

SCOP superfamily ID superfamiily description corresponding fold description
b.25.1Osmotin, thaumatin-like protein has two smaller insertion domains ! Osmotin, thaumatin-like protein sandwich; 11 strands in 2 sheets
d.152.1Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, N-terminal domain contains sandwich; duplication of alpha+beta motif with single mixed sheet ! motif: beta(2)-alpha-beta(3)-alpha-beta; strand order 216345, strands 1 and 6 are parallel
c.153.1YerB-like YerB-like 3 layers: b/b/a; central mixed beta-sheet of 9 strands, order 541329678; strands 3 and 7 are antiparallel to the rest; an unusual "over the other end" connection between strands 3 and 4
d.15.42Fe-2S ferredoxin-like beta-Grasp (ubiquitin-like) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
b.160.1L,D-transpeptidase catalytic domain-like L,D-transpeptidase catalytic domain-like barrel, closed; n=8, S=10; one overside connection
d.122.1ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 8-stranded mixed beta-sheet; 2 layers: alpha/beta
b.6.1Cupredoxins contains copper-binding site ! Cupredoxin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands
c.55.1Actin-like ATPase domain duplication contains two domains of this fold ! Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
d.177.1FAH FAH unusual fold; contains 3 layers of beta-sheet structure
b.92.1Composite domain of metallo-dependent hydrolases this domain is interrupted by the catalytic beta/alpha barrel domain ! Composite domain of metallo-dependent hydrolases pseudobarrel; mixed sheet of 7 strand folded upon itself and "buckled" by two beta-turns
c.72.1Ribokinase-like has extra strand located between strands 2 and 3 ! Ribokinase-like core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest ! potential superfamily: members of this fold have similar functions but different ATP-binding sites
b.93.1Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase N-terminal domain pseudobarrel: sandwich of two sheets packed at a positive interstrand angle and interconnected with many short turns
b.147.1BTV NS2-like ssRNA-binding domain BTV NS2-like ssRNA-binding domain sandwich; 9 strands in 2 sheets; unusual topology with 2 crossover loops
d.290.1AF0104/ALDC/Ptd012-like characteristic metal ion (zinc)-binding motif in the putative active site ! AF0104/ALDC/Ptd012-like duplication: consists of two similar beta-alpha-beta(4) motifs
d.15.1Ubiquitin-like beta-Grasp (ubiquitin-like) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
b.3.1Starch-binding domain-like Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
b.66.1Hemopexin-like domain 4-bladed beta-propeller consists of four 4-stranded beta-sheet motifs; meander
c.68.1Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
b.53.1Ribosomal protein L25-like Ribosomal protein L25-like barrel, closed; n=6, S=10; complex topology
c.55.4Translational machinery components Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
c.43.1CoA-dependent acyltransferases CoA-dependent acyltransferases core: 2 layers, a/b; mixed beta-sheet of 6 strands, order 324561; strands 3 & 6 are antiparallel to the rest
d.175.1Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain unusual fold
b.3.5Cna protein B-type domain Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
d.139.1PurM C-terminal domain-like PurM C-terminal domain-like 3 layers: alpha/beta/alpha; partial topological similarity to the ferredoxin-like fold
d.15.7Immunoglobulin-binding domains beta-Grasp (ubiquitin-like) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
d.176.1Oxidoreductase molybdopterin-binding domain Oxidoreductase molybdopterin-binding domain unusual fold; contains 3 layers of beta-sheet structure and a beta-grasp like motif
d.64.2TM1457-like forms a homodimer via alpha-helical interface ! eIF1-like beta(2)-alpha-beta(2)-alpha-beta; 2 layers: alpha/beta; mixed beta-sheet: order 51243
d.15.2CAD & PB1 domains contain extra helix; similar heterodimerization modes; possibly related to the ubiquitin-like superfamily ! beta-Grasp (ubiquitin-like) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
f.11.1Anthrax protective antigen Anthrax protective antigen 4 domains; I (res. 14-225) and II (226-487) are beta-sandwiches of similar gamma-crystallin like topologies; III (488-594) has a beta-grasp like fold; IV (595-735) has an Ig-like fold
d.15.3MoaD/ThiS possible link between the ubiquitin-like and 2Fe-2S ferredoxin-like superfamilies ! beta-Grasp (ubiquitin-like) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
d.75.2DNA repair protein MutS, domain I MutS N-terminal domain-like beta(2)-alpha-beta(2)-alpha-beta(2); 2 layers, alpha/beta
e.8.1DNA/RNA polymerases "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain ! DNA/RNA polymerases divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
d.58.10Acylphosphatase/BLUF domain-like Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.17.4NTF2-like has a beta-alpha(2)-beta insertion after the main helix ! Cystatin-like Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet
d.15.6Superantigen toxins, C-terminal domain beta-Grasp (ubiquitin-like) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
c.55.3Ribonuclease H-like consists of one domain of this fold ! Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
d.42.1POZ domain POZ domain core: beta(2)-alpha(2)-beta(2)-alpha(2); 2 layers a/b; mixed sheet: 2143
b.3.2Carboxypeptidase regulatory domain-like Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
e.53.1QueA-like QueA-like 2 domains; d1 (1-64,174-335) [alpha/beta; 3 layers, a/b/a; mixed beta sheet of 9 strands, order: 219863457; strands 1, 5 and 8 are antiparallel to the rest]; d2 (65-142) [all-beta; barrel, closed (n=6, S=10); greek-key; topologically similar to the split barrel fold (scop_cf 50474)
c.55.5Nitrogenase accessory factor-like Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
d.106.1SCP-like SCP-like alpha-beta(3)-(crossover)-beta-(alpha)-beta; 3 layers: a/b/a; antiparallel beta-sheet of 5 strands; order: 32145
d.118.1N-acetylmuramoyl-L-alanine amidase-like N-acetylmuramoyl-L-alanine amidase-like contains mixed beta-sheet
e.23.1Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 4 domains: (1&2) duplication: share the same alpha/beta fold; (3) beta-barrel; (4) alpha+beta
b.68.11Kelch motif 6-bladed beta-propeller consists of six 4-stranded beta-sheet motifs; meander
b.3.7Hypothetical protein PA1324 Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
f.9.1Perfringolysin Perfringolysin 2 domains: (1) alpha+beta; (2) all-beta, similar to the CalB domain fold but the two last strands are transposed
d.263.1Hypothetical protein Yml108w Hypothetical protein Yml108w beta(2)-alpha-beta(2)-alpha; 2 layers, alpha/beta; mixed beta-sheet 2143, strands 1 and 4 are parallel
d.335.1L,D-transpeptidase pre-catalytic domain-like L,D-transpeptidase pre-catalytic domain-like unusual fold, made of four helices and four 2-3 stranded beta-sheets
b.124.1HesB-like domain HesB-like domain barrel, closed; n=7, S=10; complex topology
c.55.2Creatinase/prolidase N-terminal domain Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
b.49.2Alanine racemase C-terminal domain-like the barrel is decorated with additional structures ! Domain of alpha and beta subunits of F1 ATP synthase-like barrel, closed; n=6, S=8; greek-key
d.68.2EPT/RTPC-like IF3-like beta-alpha-beta-alpha-beta(2); 2 layers; mixed sheet 1243, strand 4 is antiparallel to the rest
b.167.1FimD N-terminal domain-like FimD N-terminal domain-like pseudo barrel, capped by an alpha-helix; some topological similarity to the PRC-barrel domain (scop_sf 50346) and the N-terminal domain of Glutamine synthetase (scop_sf 54368)
d.31.1Cdc48 domain 2-like Cdc48 domain 2-like beta-alpha-beta(3); 2 layers: alpha/beta
d.245.1NSFL1 (p97 ATPase) cofactor p47, SEP domain NSFL1 (p97 ATPase) cofactor p47, SEP domain beta(3)-alpha(2)-beta; 2 layers; mixed beta-sheet, order 4123, strands 1 and 4 are parallel to each other
d.114.15'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain core: alpha-beta(2)-alpha-beta(2)-alpha-beta; 3 layers; mixed sheet: order 31425
d.172.1gp120 core gp120 core unusual fold
c.55.6DNA repair protein MutS, domain II Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
d.269.1Gamma-glutamyl cyclotransferase-like Gamma-glutamyl cyclotransferase-like beta-alpha-beta(4)-alpha-beta(2); contains beta-sheet barrel (n=5, S=8)
a.160.1PAP/OAS1 substrate-binding domain this domain follows the catalytic nucleotidyltransferase domain ! PAP/OAS1 substrate-binding domain core: 5-helical bundle; up-and-down; right-handed twist
c.22.1Ribosomal protein L4 Ribosomal protein L4 3 layers, a/b/a; core: parallel beta-sheet of 4 strands, order 1423
b.3.3VHL Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
d.211.2Plakin repeat repeats associate forming globular subdomains ! beta-hairpin-alpha-hairpin repeat multiple repeats of beta(2)-alpha(2) motif
d.319.1TTHA1528-like TTHA1528-like beta-alpha-beta(3)-alpha-beta-alpha(2)-beta; 3 layers: a/b/a; mixed beta-sheet, order: 143256, parallel strands' pairs are 1-4 and 2-5
c.56.6LigB-like circular permutation of the common fold, most similar to the PNP fold ! Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
b.97.1Cytolysin/lectin some topological similarity to osmotin ! Cytolysin/lectin sandwich, 10 strands in 2 sheets;
d.113.1Nudix Nudix beta(2)-alpha-beta(3)-alpha; 3 layers: alpha/beta/alpha; mixed sheet ! contains beta-grasp motif
c.64.1Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 231456; strand 3 is antiparallel to the rest
e.51.1Urocanase Urocanase 3 domains; d1: alpha+beta [alpha(2)-beta(3); mixed sheet: 213]; d2: alpha/beta of the NAD(P)-binding Rossmann-fold superfamily (scop_sf 51735, most similar to scop_fa 51883 and scop_fa 51736); d3: alpha+beta of the glutamine synthetase/guanido kinase fold (scop_cf 55930); d1 and d3 form a single beta-sheet
d.75.1tRNA-intron endonuclease N-terminal domain-like MutS N-terminal domain-like beta(2)-alpha-beta(2)-alpha-beta(2); 2 layers, alpha/beta
d.15.10TGS-like possibly related to the ubiquitin-like and MoaD/ThiS superfamilies; some similarity to the alpha-L RNA-binding motif ! beta-Grasp (ubiquitin-like) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
d.15.9Glutamine synthetase, N-terminal domain beta-Grasp (ubiquitin-like) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
d.15.8Translation initiation factor IF3, N-terminal domain beta-Grasp (ubiquitin-like) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
b.3.6Aromatic compound dioxygenase Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
d.15.5Staphylokinase/streptokinase beta-Grasp (ubiquitin-like) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
d.41.1CO dehydrogenase molybdoprotein N-domain-like alpha/beta-Hammerhead core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
b.68.8Fucose-specific lectin 6-bladed beta-propeller consists of six 4-stranded beta-sheet motifs; meander
b.146.1Ctag/Cox11 Ctag/Cox11 sandwich; 7 strands in 2 sheets, greek-key; permutation of the immunoglobulin-like fold
b.80.7beta-Roll superhelix turns are made of two short strands each ! Single-stranded right-handed beta-helix superhelix turns are made of parallel beta-strands and (short) turns
d.64.1eIF1-like eIF1-like beta(2)-alpha-beta(2)-alpha-beta; 2 layers: alpha/beta; mixed beta-sheet: order 51243
b.168.1HisI-like HisI-like pseudo barrel, capped by an alpha-helix; contains a beta-triangle structure on one side; some topological similarity to the Ribosomal protein L25-like fold (scop_cf 50714) and the N-terminal domain of Glutamine synthetase (scop_sf 54368)
d.15.11Doublecortin (DC) possibly related to the ubiquitin-like superfamily ! beta-Grasp (ubiquitin-like) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
b.69.1Galactose oxidase, central domain 7-bladed beta-propeller consists of seven 4-stranded beta-sheet motifs; meander
b.68.7Tricorn protease N-terminal domain possibly related to the second domain of tricorn protease (a distorted 7-bladed beta-propeller) ! 6-bladed beta-propeller consists of six 4-stranded beta-sheet motifs; meander
e.58.1Viral ssDNA binding protein Viral ssDNA binding protein 2 domains; d1: [large alpha+beta domain subdivided into the 'head', 'neck' and 'shoulders' regions; in the 'neck', there is an OB-fold interrupted by large insertions]; d2: [all-alpha, 6 helices; orthogonal array]
e.38.1Release factor Release factor 4 domains: (1) 3-helical bundle; (2) alpha+beta of ferredoxin-like fold (3 and 4) alpha+beta of dsRDB-like fold
e.32.1Phase 1 flagellin Phase 1 flagellin 3 domains: (1) alpha-helical bundle; (2&3) complex all-beta folds
d.268.1ParB/Sulfiredoxin ParB/Sulfiredoxin beta*-alpha-beta(2)-alpha-beta-alpha; mixed beta sheet forms a partly open barrel: (n*=4, S*=8)
e.59.1FdhE-like FdhE-like consists on the N-terminal five-helical bundle, a tandem repeat of two rubredoxin-like domains and the C-terminal helix packed together
g.3.9Growth factor receptor domain Knottins (small inhibitors, toxins, lectins) disulfide-bound fold; contains beta-hairpin with two adjacent disulfides
b.69.6Clathrin heavy-chain terminal domain 7-bladed beta-propeller consists of seven 4-stranded beta-sheet motifs; meander
d.257.1Hypothetical protein TM0160 Hypothetical protein TM0160 duplication: consists of two beta(3)-alpha(2) structural repeats; single barrel-like beta-sheet
e.69.1Poly(A) polymerase catalytic subunit-like Central domain d2 is distantly related to the nucleotidyltransferase superfamily (scop_sf 81301)Poly(A) polymerase catalytic subunit-like 3 domains; d1: all-alpha, contains HhH motif; d2: alpha+beta of nucleotidyltransferase fold (scop_cf 81302); d3: [alpha+beta; beta(3)-alpha-beta(3)-alpha(2); 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 123654, strands 2 and 5 are antiparallel to the rest
c.134.1LmbE-like LmbE-like 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest; topological similarity to SAM-dependent methyltransferases
b.102.1Methuselah ectodomain duplication: contains two similar sub domains connected by a structured linker ! Methuselah ectodomain complex fold
b.57.1Herpes virus serine proteinase, assemblin Herpes virus serine proteinase, assemblin core: barrel, closed; n=7, S=8; complex topology
b.41.1PRC-barrel domain PRC-barrel domain core: barrel, partly opened; n*=5, S*=8; meander
b.39.1Ribosomal protein L14 Ribosomal protein L14 barrel, closed; n=5, S=8, meander
e.6.1Acyl-CoA dehydrogenase NM domain-like flavoprotein: binds FAD; constituent families differ in the numbers of C-terminal domains (four-helical bundles) ! Acyl-CoA dehydrogenase NM domain-like 2 domains: (1) all-alpha: 5 helices; (2) contains an open beta-sheet barrel: n*=5, S*=8; complex topology
d.178.1Aromatic aminoacid monoxygenases, catalytic and oligomerization domains Aromatic aminoacid monoxygenases, catalytic and oligomerization domains unusual fold
b.55.2PA2021-like prokaryotiic proteins of PH domain-like fold lacking the N-terminal strand ! PH domain-like barrel barrel, partly opened; n*=6, S*=12; meander; capped by an alpha-helix
d.15.12TmoB-like possibly related to the ubiquitin-like and/or 2Fe-2S ferredoxin-like superfamilies ! beta-Grasp (ubiquitin-like) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
d.299.1Ns1 effector domain-like Ns1 effector domain-like beta-X-beta(5)-alpha-beta-alpha; 2 layers: a/b; bifurcated beta-sheet; order 23654[1,7]
d.116.1YbaK/ProRS associated domain YbaK/ProRS associated domain core: alpha-beta-alpha-beta(2)-(alpha-beta)2-alpha-beta(2)-alpha-beta; 3 layers; bifurcated mixed sheet
c.56.2Purine and uridine phosphorylases complex architecture; contains mixed beta-sheet of 8 strands, order 23415867, strands 3, 6 & 7 are antiparallel to the rest; and barrel, closed; n=5, S=8 ! Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
c.71.1Dihydrofolate reductase-like Dihydrofolate reductase-like 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 34251687; strand 8 is antiparallel to the rest
b.98.1Leukotriene A4 hydrolase N-terminal domain Leukotriene A4 hydrolase N-terminal domain duplication: two beta-sandwiches of similar topologies are fused together in a single three beta-sheet domain
b.28.1Baculovirus p35 protein has a few helices inserted in loops ! Baculovirus p35 protein sandwich; 14 strands in 2 sheets; greek-key
d.15.13Nqo1 middle domain-like possibly evolved from 2Fe-2S ferredoxins; contains no iron-sulfur cluster ! beta-Grasp (ubiquitin-like) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
b.142.1DNA-binding pseudobarrel domain DNA-binding pseudobarrel domain core: barrel, open; n=7, S*=10; capped with helices at both ends; partial similarity to the AbrB/MazE/MraZ-like fold (scop_cf 89446)
d.15.14NSP3A-like short helical inserions in the common foldbeta-Grasp (ubiquitin-like) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
d.22.1GFP-like GFP-like beta-sheet folds into a barrel (n=11, S=14) around the central helix
d.179.1Substrate-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase unusual fold
c.51.6XCC0632-like short crossover loop between strands 2 and 3; the antiparallel part of the beta-sheet (strands 3, 4 and 5) and the C-terminal helix are quite longAnticodon-binding domain-like 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest
b.96.1Nicotinic receptor ligand binding domain-like Nicotinic receptor ligand binding domain-like sandwich; 8 strands in 2 sheets; greek-key: partial topological similarity to immunoglobulin-like folds
b.131.1SPOC domain-like SPOC domain-like barrel, closed; n=7, S=10; complex topology
b.85.5Tlp20, baculovirus telokin-like protein similar to dUTPase in fold and trimeric assembly ! beta-clip double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
d.220.1Metal cation-transporting ATPase, ATP-binding domain N Metal cation-transporting ATPase, ATP-binding domain N unusual fold; core: beta-alpha(2)-beta(3)-alpha(2)-beta(2); 6-stranded antiparallel beta-sheet, order: 165432
e.35.1Membrane penetration protein mu1 Membrane penetration protein mu1 4 domains: three intertwined predominately alpha domains and one jelly-roll beta-sandwich
b.2.7Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor duplication: one domain of this fold is inserted into another domain of the same fold ! Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
f.12.1Head and neck region of the ectodomain of NDV fusion glycoprotein Head and neck region of the ectodomain of NDV fusion glycoprotein 3 intertwined all-beta domains