1. e.51.1 Urocanase Urocanase 3 domains; d1: alpha+beta [alpha(2)-beta(3); mixed sheet: 213]; d2: alpha/beta of the NAD(P)-binding Rossmann-fold superfamily (scop_sf 51735, most similar to scop_fa 51883 and scop_fa 51736); d3: alpha+beta of the glutamine synthetase/guanido kinase fold (scop_cf 55930); d1 and d3 form a single beta-sheet 1uwk d1uwka_ A:369-385,387-402,407-414 1w1u d1w1ua_ A:369-385,387-402,407-414 1uwk d1uwkb_ B:369-385,387-401,407-414 1uwl d1uwla_ A:369-385,387-401,407-414 1uwl d1uwlb_ B:369-385,387-401,407-414 1w1u d1w1ub_ B:369-385,387-401,407-414 1x87 d1x87a_ A:364-380,382-397,402-408 1x87 d1x87b_ B:364-380,382-397,402-409 1uwl d1uwlb_ B:24-39,61-75,100-106 1w1u d1w1ub_ B:24-39,61-75,100-106 1uwk d1uwkb_ B:24-39,61-75,100-106 1uwk d1uwka_ A:24-39,61-75,100-106 1uwl d1uwla_ A:24-39,61-75,100-106 1w1u d1w1ua_ A:24-39,61-75,100-106 1x87 d1x87a_ A:19-34,56-70,72-80 1w1u d1w1ua_ A:24-39,61-75,77-85 1uwk d1uwka_ A:24-39,61-75,77-85 1uwk d1uwkb_ B:24-39,61-75,77-85 1uwl d1uwla_ A:24-39,61-75,77-85 1w1u d1w1ub_ B:24-39,61-75,77-85 1uwl d1uwlb_ B:24-39,61-75,77-85 1x87 d1x87b_ B:19-34,56-70,72-80 1x87 d1x87b_ B:19-34,56-70,95-102 1x87 d1x87a_ A:19-34,56-70,95-104 2. d.142.1 Glutathione synthetase ATP-binding domain-like ATP-grasp Consists of two subdomains with different alpha+beta folds ! shares functional and structural similarities with the PIPK and protein kinase superfamilies 1gso d1gsoa3 A:127-139,160-173,183-189 1kjq d1kjqa3 A:137-149,170-185,191-197 1bxr d1bxra5 A:151-163,184-200,203-209 1ez1 d1ez1a3 A:137-149,170-185,191-197 1vkz d1vkza3 A:117-129,150-164,173-178 1i7l d1i7lb2 B:255-262,285-300,301-308 1a9x d1a9xg5 G:6151-6163,6184-6200,6203-6209 1vkz d1vkzb3 B:117-129,150-164,173-178 1cs0 d1cs0g5 G:151-163,184-200,203-209 1c30 d1c30a5 A:151-163,184-200,203-209 1c30 d1c30g5 G:151-163,184-200,203-209 1bxr d1bxrc5 C:151-163,184-200,203-209 1jdb d1jdbe5 E:150-162,183-199,202-208 1m6v d1m6vg5 G:151-163,184-200,203-209 1bxr d1bxrg5 G:151-163,184-200,203-209 1ce8 d1ce8g5 G:151-163,184-200,203-209 1t36 d1t36c5 C:151-163,184-200,203-209 1i7l d1i7la2 A:255-262,285-300,301-308 1ce8 d1ce8e5 E:151-163,184-200,203-209 1kee d1keeg5 G:151-163,184-200,203-209 2glt d2glta2 A:143-155,177-189,194-200 1c3o d1c3oa5 A:151-163,184-200,203-209 1ce8 d1ce8a5 A:151-163,184-200,203-209 1t36 d1t36g5 G:151-163,184-200,203-209 1c3o d1c3og5 G:151-163,184-200,203-209 1m6v d1m6vc5 C:151-163,184-200,203-209 1ce8 d1ce8c5 C:151-163,184-200,203-209 1i7n d1i7na2 A:255-262,285-300,301-308 1kee d1keea5 A:151-163,184-200,203-209 1m6v d1m6va5 A:151-163,184-200,203-209 1eyz d1eyza3 A:137-149,170-185,191-197 1glv d1glva2 A:143-155,177-189,194-200 1bxr d1bxre5 E:151-163,184-200,203-209 1jdb d1jdbk5 K:150-162,183-199,202-208 1t36 d1t36a5 A:151-163,184-200,203-209 1cs0 d1cs0a5 A:151-163,184-200,203-209 1kee d1keec5 C:151-163,184-200,203-209 1jdb d1jdbh5 H:150-162,183-199,202-208 1a9x d1a9xe5 E:4151-4163,4184-4200,4203-4209 1c30 d1c30c5 C:151-163,184-200,203-209 1kji d1kjia3 A:137-149,170-185,191-197 1i7n d1i7nb2 B:255-262,285-300,301-308 1c30 d1c30e5 E:151-163,184-200,203-209 1a9x d1a9xa5 A:151-163,184-200,203-209 1a9x d1a9xc5 C:2151-2163,2184-2200,2203-2209 1cs0 d1cs0e5 E:151-163,184-200,203-209 1c3o d1c3oc5 C:151-163,184-200,203-209 1gsh d1gsha2 A:143-155,177-189,194-200 1cs0 d1cs0c5 C:151-163,184-200,203-209 1ehi d1ehia2 A:157-165,195-211,212-218 1c3o d1c3oe5 E:151-163,184-200,203-209 1jdb d1jdbb5 B:150-162,183-199,202-208 1ehi d1ehib2 B:557-565,595-611,611-618 1kee d1keee5 E:151-163,184-200,203-209 1m6v d1m6ve5 E:151-163,184-200,203-209 1t36 d1t36e5 E:151-163,184-200,203-209 1kji d1kjib3 B:137-149,170-187,191-197 1kjj d1kjja3 A:137-149,170-184,191-197 1w93 d1w93a3 A:234-246,267-283,286-292 1kj9 d1kj9a3 A:137-149,170-184,191-197 1kj8 d1kj8a3 A:137-149,170-184,191-197 1w96 d1w96b3 B:234-246,267-283,285-292 1w96 d1w96c3 C:234-246,267-283,285-292 1kjq d1kjqb3 B:137-149,170-184,191-197 1w96 d1w96a3 A:234-246,267-283,285-292 1kj8 d1kj8b3 B:137-149,170-182,191-197 1kjj d1kjjb3 B:137-149,170-183,191-197 1uc8 d1uc8a2 A:111-123,144-154,164-171 1dv1 d1dv1a3 A:141-153,174-189,197-203 2scu d2scub2 B:27-39,65-77,95-101 1uc9 d1uc9a2 A:111-123,144-154,165-171 1scu d1scub2 B:27-39,65-77,95-101 2nu9 d2nu9e2 E:27-39,65-77,95-101 2nu9 d2nu9g2 G:27-39,65-77,95-101 2nu9 d2nu9i2 I:27-39,65-77,95-101 2nu9 d2nu9b2 B:27-39,65-77,95-101 1jdb d1jdbk6 K:696-708,729-740,748-754 1cqi d1cqie2 E:27-39,65-77,95-101 1cqi d1cqib2 B:27-39,65-77,95-101 2fpg d2fpgb2 B:27-39,72-85,102-108 1cqj d1cqje2 E:27-39,65-77,95-101 1gsa d1gsaa2 A:143-155,179-189,194-200 1cqj d1cqjb2 B:27-39,65-77,95-101 1jll d1jllb2 B:27-39,65-77,95-101 1ulz d1ulza3 A:139-151,172-191,193-201 2fpi d2fpib2 B:27-39,72-85,102-108 2nua d2nuae2 E:27-39,65-77,95-101 2nua d2nuab2 B:27-39,65-77,95-101 1jll d1jlle2 E:27-39,65-77,95-101 2nu6 d2nu6e2 E:27-39,65-77,95-101 2scu d2scue2 E:27-39,65-77,95-101 2nu6 d2nu6b2 B:27-39,65-77,95-101 2nu8 d2nu8e2 E:27-39,65-77,95-101 1jkj d1jkjb2 B:27-39,65-77,95-101 1jkj d1jkje2 E:27-39,65-77,95-101 2nu8 d2nu8b2 B:27-39,65-77,95-101 2fp4 d2fp4b2 B:27-39,72-85,102-108 2nu7 d2nu7e2 E:27-39,65-77,95-101 2nu7 d2nu7b2 B:27-39,65-77,95-101 1uc8 d1uc8b2 B:111-123,144-152,164-171 1euc d1eucb2 B:27-39,72-84,102-108 1eud d1eudb2 B:27-39,72-84,102-108 1scu d1scue2 E:27-39,65-77,95-101 2hgs d2hgsa4 A:344-358,375-389,395-400 1uc9 d1uc9b2 B:111-123,144-152,165-171 2fpp d2fppb2 B:27-39,72-84,102-108 1iow d1iowa2 A:127-138,159-175,176-182 2j9g d2j9ga3 A:141-153,174-190,197-203 2dln d2dlna2 A:127-138,159-175,176-182 1dv2 d1dv2a3 A:141-153,174-194,197-203 2gpw d2gpwb3 B:141-153,174-191,197-203 1m0w d1m0wb2 B:1362-1376,1394-1405,1411-1417 1m0w d1m0wa2 A:362-376,394-405,411-417 1iov d1iova2 A:127-138,159-175,176-182 2gpw d2gpwa3 A:141-153,174-193,197-203 1dv2 d1dv2b3 B:141-153,174-194,197-203 1iov d1iova2 A:118-125,159-175,176-182 2gps d2gpsa3 A:141-153,174-194,197-203 1ce8 d1ce8c6 C:697-709,730-741,750-755 1ce8 d1ce8a6 A:697-709,730-741,750-755 2vr1 d2vr1a3 A:141-153,174-194,197-203 1ce8 d1ce8g6 G:697-709,730-741,750-755 1c30 d1c30g6 G:697-709,730-741,750-755 1ce8 d1ce8e6 E:697-709,730-741,750-755 1cs0 d1cs0g6 G:697-709,730-741,750-755 1a9x d1a9xa6 A:697-709,730-741,750-755 2dln d2dlna2 A:118-125,159-175,176-182 1t36 d1t36c6 C:697-709,730-741,750-755 1eyz d1eyzb3 B:137-149,173-185,191-197 1a9x d1a9xg6 G:6697-6709,6730-6741,6750-6755 1a9x d1a9xc6 C:2697-2709,2730-2741,2750-2755 1jdb d1jdbb6 B:696-708,729-740,749-754 1c30 d1c30e6 E:697-709,730-741,750-755 1iow d1iowa2 A:118-125,159-175,176-182 1m6v d1m6va6 A:697-709,730-741,750-755 1m6v d1m6ve6 E:697-709,730-741,750-755 1t36 d1t36e6 E:697-709,730-741,750-755 1c3o d1c3oe6 E:697-709,730-741,750-755 1t36 d1t36a6 A:697-709,730-741,750-755 1kee d1keec6 C:697-709,730-741,750-755 1m6v d1m6vc6 C:697-709,730-741,750-755 1c3o d1c3og6 G:697-709,730-741,750-755 1t36 d1t36g6 G:697-709,730-741,750-755 1cs0 d1cs0a6 A:697-709,730-741,750-755 1kee d1keee6 E:697-709,730-741,750-755 1kee d1keeg6 G:697-709,730-741,750-755 1m6v d1m6vg6 G:697-709,730-741,750-755 1ez1 d1ez1b3 B:137-149,173-185,191-197 2vr1 d2vr1b3 B:141-153,174-189,198-203 1kee d1keea6 A:697-709,730-741,750-755 1c30 d1c30a6 A:697-709,730-741,750-755 1cs0 d1cs0c6 C:697-709,730-741,750-755 1c3o d1c3oc6 C:697-709,730-741,750-755 1cs0 d1cs0e6 E:697-709,730-741,750-755 1c3o d1c3oa6 A:697-709,730-741,750-755 1a9x d1a9xe6 E:4697-4709,4730-4741,4750-4755 1kj9 d1kj9b3 B:137-149,173-185,191-197 1c30 d1c30c6 C:697-709,730-741,750-755 1jdb d1jdbe6 E:696-708,729-740,749-754 1jdb d1jdbh6 H:696-708,729-740,749-754 1vbg d1vbga3 A:293-302,301-320,322-331 1bnc d1bnca3 A:141-153,174-190,199-203 3eth d3ethb3 B:102-114,135-143,149-155 1w96 d1w96a3 A:176-184,185-197,217-222 1b6s d1b6sb3 B:102-114,135-143,149-155 1jde d1jdea3 A:290-299,298-317,319-328 1vbh d1vbha3 A:293-302,301-320,322-331 1bnc d1bncb3 B:141-153,174-187,199-203 1b6s d1b6sd3 D:102-114,135-143,149-155 1dv1 d1dv1b3 B:141-153,174-187,199-203 3etj d3etja3 A:102-114,135-143,149-155 1w96 d1w96b3 B:176-184,185-197,217-222 1ggo d1ggoa3 A:290-299,298-317,319-328 2dik d2dika3 A:290-299,298-317,319-328 1w93 d1w93a3 A:176-184,185-197,217-222 1kc7 d1kc7a3 A:290-299,298-317,319-328 1b6s d1b6sc3 C:102-114,135-143,149-155 1dik d1dika3 A:290-299,298-317,319-328 1w96 d1w96c3 C:176-184,185-197,217-222 1kbl d1kbla3 A:290-299,298-317,319-328 2r82 d2r82a3 A:290-299,298-317,319-328 1vbg d1vbga3 A:63-82,202-220,238-245 1vbh d1vbha3 A:63-82,202-220,238-245 2gpw d2gpwc3 C:141-153,177-194,197-203 2hgs d2hgsa4 A:82-91,304-313,337-341 2gpw d2gpwd3 D:141-153,177-194,197-203 1jde d1jdea3 A:58-77,199-217,235-242 1kc7 d1kc7a3 A:58-77,199-217,235-242 2gps d2gpsb3 B:141-153,177-194,197-203 1dik d1dika3 A:58-77,199-217,235-242 1kbl d1kbla3 A:58-77,199-217,235-242 1ggo d1ggoa3 A:58-77,199-217,235-242 2dik d2dika3 A:58-77,199-217,235-242 1euc d1eucb2 B:163-175,177-199,199-212 2fp4 d2fp4b2 B:163-175,177-199,199-212 2fpp d2fppb2 B:163-175,177-199,199-212 2fpg d2fpgb2 B:163-175,177-199,199-212 1eud d1eudb2 B:163-175,177-199,199-212 1m0t d1m0ta2 A:362-376,396-405,412-417 2fpi d2fpib2 B:163-175,177-199,199-212 2r82 d2r82a3 A:58-77,199-217,235-242 1m0t d1m0tb2 B:1362-1376,1396-1405,1412-1417 1bxr d1bxre6 E:697-709,737-746,749-755 1bxr d1bxrg6 G:697-709,737-746,749-755 1bxr d1bxra6 A:697-709,737-746,749-755 1bxr d1bxrc6 C:697-709,737-746,749-755 3eth d3etha3 A:105-114,135-143,149-155 2io7 d2io7b3 B:338-354,362-376,590-601 2io8 d2io8a3 A:338-354,360-377,590-601 2io9 d2io9b3 B:338-354,360-377,590-601 2io9 d2io9a3 A:343-354,360-377,590-601 3. d.264.1 Prim-pol domain Prim-pol domain consists of two alpha+beta domains 1ro0 d1ro0a_ A:41-54,81-95,96-102 1rni d1rnia_ A:41-54,81-95,96-102 1ro2 d1ro2a_ A:41-54,81-95,97-102 1g71 d1g71b_ B:25-32,55-67,69-75 1v33 d1v33a_ A:25-32,55-67,68-75 1g71 d1g71a_ A:25-32,55-67,69-75 1v34 d1v34a_ A:25-32,55-67,68-75 1g71 d1g71b_ B:7-19,55-67,69-75 1g71 d1g71a_ A:7-19,55-67,69-75 1zt2 d1zt2a1 A:12-25,310-321,322-329 1zt2 d1zt2a1 A:12-25,56-69,70-78 8. d.161.1 ADC synthase the active site is formed by additional structures inserted into the core structure ! ADC synthase duplication: contains four repeats of alpha-beta(2)-beta motif arranged in a 4 layer core structure: alpha/beta/beta/alpha; orthogonally packed beta-sheets 1k0g d1k0ga_ A:16-26,225-238,238-248 1k0g d1k0gb_ B:16-26,225-238,238-248 1k0e d1k0ea_ A:16-28,225-238,238-248 2g5f d2g5fb1 B:25-39,219-232,234-242 1k0e d1k0eb_ B:16-28,225-238,238-248 2g5f d2g5fc1 C:25-42,219-232,234-242 2g5f d2g5fd1 D:25-42,219-232,235-242 2i6y d2i6ya1 A:25-42,219-232,234-242 2g5f d2g5fa1 A:25-39,219-232,234-242 1i7s d1i7sa_ A:20-30,276-289,291-299 2fn0 d2fn0a1 A:13-28,207-220,222-230 1i1q d1i1qa_ A:20-30,276-289,291-299 2fn1 d2fn1a1 A:13-28,207-220,222-230 1i7s d1i7sc_ C:20-30,276-289,291-299 1qdl d1qdla_ A:57-69,320-329,358-366 2fn0 d2fn0b1 B:12-28,207-220,222-230 2fn1 d2fn1b1 B:12-28,207-220,222-230 1i7q d1i7qa_ A:20-30,276-289,291-299 1i7q d1i7qc_ C:20-30,276-289,291-299 1k0g d1k0gb_ B:78-91,353-362,391-399 2eua d2euaa1 A:39-48,206-219,220-229 1k0g d1k0ga_ A:78-91,353-362,391-399 2eua d2euab1 B:39-48,206-219,220-229 1k0e d1k0ea_ A:78-91,353-362,391-399 1k0e d1k0eb_ B:78-91,353-362,391-399 3bzm d3bzma1 A:39-48,206-219,220-229 3bzn d3bzna1 A:39-48,206-219,220-229 1qdl d1qdla_ A:11-24,192-205,207-215 2eua d2euaa1 A:75-87,331-340,369-377 2g5f d2g5fd1 D:87-101,348-357,386-394 3bzn d3bzna1 A:75-87,331-340,369-377 2g5f d2g5fa1 A:87-101,348-357,386-394 2eua d2euab1 B:75-87,331-340,369-377 3bzm d3bzma1 A:75-87,331-340,369-377 2g5f d2g5fc1 C:87-104,348-357,386-394 2g5f d2g5fb1 B:87-104,348-357,386-394 2i6y d2i6ya1 A:87-103,348-357,385-394 1i7s d1i7sc_ C:122-135,412-421,450-458 1i7s d1i7sa_ A:122-135,412-421,450-458 1i7q d1i7qa_ A:122-135,412-421,450-458 1i7q d1i7qc_ C:122-135,412-421,450-458 1i1q d1i1qa_ A:122-135,412-421,450-458 10. e.15.1 Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 2 domains: alpha+beta and all-beta 1sc7 d1sc7a3 A:250-267,271-286,358-362 1r49 d1r49a3 A:250-266,271-286,357-362 1rrj d1rrja3 A:250-267,271-286,358-362 1k4t d1k4ta3 A:250-267,271-286,357-362 1seu d1seua3 A:250-267,271-286,358-362 1ej9 d1ej9a2 A:250-264,271-287,357-362 1a36 d1a36a3 A:250-267,271-286,357-362 1a31 d1a31a2 A:250-267,271-286,357-362 1t8i d1t8ia3 A:250-267,271-286,358-362 1lpq d1lpqa3 A:250-267,271-286,357-362 1tl8 d1tl8a3 A:250-267,271-286,358-362 1a35 d1a35a2 A:250-267,271-286,357-362 1rr8 d1rr8c2 C:250-267,271-287,357-362 1k4s d1k4sa2 A:250-267,271-287,357-361 1ois d1oisa_ A:178-192,199-218,289-295 1nh3 d1nh3a2 A:250-264,271-287,357-361 13. d.131.1 DNA clamp DNA clamp contains two helices and two beta sheets ! duplication: fold has internal pseudo two-fold symmetry 1ok7 d1ok7b1 B:6-19,71-83,87-93 1plr d1plra2 A:140-156,208-222,224-230 1mmi d1mmia3 A:259-274,320-332,335-341 3bep d3bepa3 A:259-274,320-332,335-341 2pol d2pola3 A:259-274,320-332,335-341 1unn d1unna3 A:259-274,320-332,335-341 1unn d1unnb3 B:259-274,320-332,335-341 1ul1 d1ul1b2 B:140-156,208-219,224-230 3bep d3bepb3 B:259-274,320-332,335-341 3d1e d3d1eb3 B:259-274,320-332,335-340 1sxj d1sxjg1 G:8-20,71-83,86-93 3d1e d3d1ea3 A:259-274,320-332,335-341 2od8 d2od8a2 A:140-155,208-219,224-230 1ul1 d1ul1c2 C:140-156,208-219,224-230 1axc d1axce2 E:140-156,208-219,224-230 2pol d2polb3 B:259-274,320-332,335-341 1mmi d1mmib3 B:259-274,320-332,335-341 1vym d1vymc2 C:140-156,208-219,224-230 3d1g d3d1gb3 B:259-274,320-332,335-341 1vyj d1vyjk2 K:140-156,208-219,224-230 1vym d1vymb2 B:140-156,208-219,224-230 3d1g d3d1ga3 A:259-274,320-332,335-341 1vyj d1vyji2 I:140-156,208-219,224-230 1plq d1plqa2 A:140-152,208-219,224-230 3d1f d3d1fa3 A:259-274,320-332,335-341 1vyj d1vyja2 A:140-156,208-219,224-230 1sxj d1sxjf2 F:140-155,208-223,224-230 1ok7 d1ok7a3 A:259-274,320-332,335-341 1w60 d1w60a1 A:8-24,71-83,86-93 1vyj d1vyjc2 C:140-156,208-219,224-230 1rxz d1rxza1 A:7-23,70-82,86-92 3d1f d3d1fb3 B:259-274,320-332,335-341 1w60 d1w60b1 B:8-24,71-83,86-93 1u76 d1u76a2 A:140-156,208-219,224-230 1sxj d1sxjf1 F:8-20,71-83,86-93 1u76 d1u76c2 C:140-156,208-219,224-230 1axc d1axca2 A:140-155,208-219,224-230 1ok7 d1ok7b3 B:259-274,320-332,335-341 1sxj d1sxjg2 G:140-152,208-219,224-230 1u7b d1u7ba2 A:140-155,208-219,224-230 1ul1 d1ul1b1 B:8-24,71-83,86-93 1rxm d1rxma1 A:7-22,70-82,86-92 1vyj d1vyjg2 G:140-155,208-219,224-230 1ul1 d1ul1a2 A:140-156,208-219,224-230 1vyj d1vyjc1 C:8-24,71-83,86-93 1vym d1vyma2 A:140-155,208-219,224-230 1w60 d1w60a2 A:140-155,208-219,224-230 1w60 d1w60b2 B:140-155,208-219,224-230 1axc d1axcc2 C:140-155,208-219,224-230 1u76 d1u76e2 E:140-155,208-219,224-230 1vyj d1vyja1 A:8-24,71-83,86-93 1ul1 d1ul1c1 C:8-24,71-83,86-93 1axc d1axce1 E:8-24,71-83,86-93 1rwz d1rwza1 A:7-22,70-82,86-92 1vym d1vymc1 C:8-24,71-83,86-93 1ge8 d1ge8a1 A:9-25,72-84,87-94 1isq d1isqa1 A:9-25,72-83,87-94 1iz4 d1iz4a1 A:9-25,72-84,87-94 1iz5 d1iz5a2 A:137-152,200-211,215-223 1iz5 d1iz5a1 A:9-24,72-83,87-94 1jql d1jqla3 A:259-275,320-332,335-341 1plq d1plqa1 A:8-20,71-83,86-93 1iz5 d1iz5b1 B:9-24,72-83,87-94 1vyj d1vyje2 E:141-156,208-219,224-230 1plr d1plra1 A:8-20,71-82,84-93 1dml d1dmle2 E:181-193,272-282,284-292 1dml d1dmlg2 G:181-193,272-282,284-292 1axc d1axca1 A:8-24,71-83,85-93 1u7b d1u7ba1 A:8-24,71-83,85-93 2od8 d2od8a1 A:8-24,71-82,86-93 1axc d1axcc1 C:8-24,71-83,85-93 1vyj d1vyjg1 G:8-24,71-83,85-93 1sxj d1sxjh1 H:8-20,71-83,85-93 1vyj d1vyji1 I:8-24,71-83,85-93 1vyj d1vyje1 E:8-24,71-83,85-93 1ud9 d1ud9b1 B:7-23,70-82,85-91 1ul1 d1ul1a1 A:8-24,71-83,85-93 1vym d1vymb1 B:8-20,71-82,85-93 1u76 d1u76e1 E:8-24,71-83,85-93 1u76 d1u76c1 C:8-24,71-83,85-93 1u76 d1u76a1 A:8-24,71-83,85-93 1jqj d1jqjb2 B:131-146,196-208,213-220 1vym d1vyma1 A:8-24,71-83,85-93 1unn d1unnb2 B:131-146,196-208,213-220 1ud9 d1ud9d1 D:7-23,70-82,85-91 1jqj d1jqja2 A:131-146,196-208,213-220 1ud9 d1ud9c1 C:7-23,70-82,85-91 1vyj d1vyjk1 K:8-24,71-83,85-93 1vpk d1vpka3 A:258-276,319-331,334-340 1ud9 d1ud9a1 A:7-23,70-82,85-91 1unn d1unna2 A:131-146,196-208,213-220 1rwz d1rwza2 A:134-149,194-206,209-216 1rxm d1rxma2 A:134-149,194-206,209-216 3d1g d3d1ga2 A:131-146,196-208,213-220 3bep d3bepa2 A:131-146,196-208,213-220 1jql d1jqla2 A:131-146,196-208,213-220 2pol d2pola2 A:131-146,196-208,213-220 1jqj d1jqjb3 B:259-275,320-332,334-341 1jqj d1jqja3 A:259-275,320-332,334-341 1mmi d1mmib2 B:131-146,196-208,213-220 1ok7 d1ok7a2 A:131-146,196-208,213-220 3d1e d3d1ea2 A:131-146,196-208,213-220 2pol d2polb2 B:131-146,196-208,213-220 1mmi d1mmia2 A:131-146,196-208,213-220 1ok7 d1ok7b2 B:131-146,196-208,213-220 3d1e d3d1eb2 B:131-146,196-208,213-220 3d1f d3d1fb2 B:131-146,196-208,213-220 3bep d3bepb2 B:131-146,196-208,213-220 3d1g d3d1gb2 B:131-146,196-208,213-220 1rxz d1rxza2 A:134-149,194-206,209-216 3d1f d3d1fa2 A:131-146,196-208,213-220 1vpk d1vpka2 A:130-145,194-208,212-219 1yyp d1yypa2 A:150-161,222-237,239-246 1iz5 d1iz5b2 B:137-152,200-211,216-223 1jqj d1jqja1 A:6-19,71-82,87-94 1jqj d1jqjb1 B:6-19,71-82,87-94 1vpk d1vpka1 A:6-21,71-82,86-93 1t6l d1t6la2 A:150-162,222-237,239-247 1jql d1jqla1 A:6-19,71-83,87-94 1iz4 d1iz4a2 A:138-149,200-209,215-223 1mmi d1mmib1 B:6-21,71-83,87-94 1mmi d1mmia1 A:6-21,71-83,87-94 2pol d2polb1 B:6-21,71-83,87-94 3d1f d3d1fa1 A:6-19,71-83,87-94 3bep d3bepb1 B:6-19,71-83,87-94 1ud9 d1ud9b2 B:135-150,204-212,213-220 3d1e d3d1eb1 B:6-19,71-83,87-94 1unn d1unna1 A:6-22,71-83,87-94 1ok7 d1ok7a1 A:6-21,71-83,87-94 1unn d1unnb1 B:6-22,71-83,87-94 3d1g d3d1gb1 B:6-19,71-83,87-94 3bep d3bepa1 A:6-22,71-83,87-94 3d1f d3d1fb1 B:6-22,71-83,87-94 2pol d2pola1 A:6-22,71-83,87-94 3d1e d3d1ea1 A:6-22,71-83,87-94 14. d.240.1 Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain beta-alpha-beta(2)-alpha-beta; antiparallel beta-sheet: order 1423; "reversed" ferredoxin-like topology 1unn d1unnc_ C:255-267,308-325,328-338 1unn d1unnd_ D:255-267,308-325,328-338 2dpj d2dpja1 A:313-327,379-394,404-412 1t94 d1t94a1 A:427-443,483-500,505-515 2fll d2flla1 A:313-336,379-394,404-412 2alz d2alza1 A:313-336,379-394,404-412 2flp d2flpa1 A:317-336,379-394,404-412 2dpi d2dpia1 A:317-336,379-394,404-412 2v9w d2v9wb1 B:257-277,307-327,329-339 1t3n d1t3nb1 B:733-746,796-811,826-832 3bq2 d3bq2a1 A:258-278,307-327,330-340 2fln d2flna1 A:313-336,379-394,404-414 2ibk d2ibka1 A:257-277,307-327,329-339 1s0m d1s0ma1 A:257-277,307-327,329-339 2va2 d2va2b1 B:257-277,307-327,329-339 2va3 d2va3a1 A:257-277,307-327,329-339 1t94 d1t94b1 B:427-450,480-500,505-516 2c2e d2c2ea1 A:257-277,307-327,329-339 1s0m d1s0mb1 B:257-277,307-327,329-339 3bq0 d3bq0a1 A:258-278,307-327,330-340 2r8h d2r8ha1 A:257-277,307-327,329-339 2uvu d2uvua1 A:257-277,307-327,329-339 1s97 d1s97c1 C:257-277,307-327,329-339 2agq d2agqa1 A:257-277,307-327,329-339 1s0o d1s0oa1 A:257-277,307-327,329-339 1n56 d1n56a1 A:257-277,307-327,329-339 2rdj d2rdjb1 B:257-277,307-327,329-339 2r8i d2r8ia1 A:257-277,307-327,329-339 2va2 d2va2a1 A:257-277,307-327,329-339 1s97 d1s97b1 B:257-277,307-327,329-339 2jei d2jeia1 A:257-277,307-327,329-339 1s10 d1s10a1 A:257-277,307-327,329-339 2asj d2asjb1 B:1257-1277,1307-1327,1329-1339 1rys d1rysa1 A:257-277,307-327,329-339 1zet d1zeta1 A:316-326,375-395,403-414 2j6u d2j6ua1 A:260-280,310-330,332-342 2j6t d2j6ta1 A:257-277,307-327,329-339 1s0o d1s0ob1 B:257-277,307-327,329-339 2bqu d2bqua1 A:257-277,307-327,329-339 2au0 d2au0a1 A:257-277,307-327,329-339 2asd d2asda1 A:257-277,307-327,329-339 2j6s d2j6sa1 A:257-277,307-327,329-339 2asj d2asja1 A:257-277,307-327,329-339 2jej d2jeja1 A:257-277,307-327,329-339 3bq1 d3bq1a1 A:258-278,307-327,330-340 2uvv d2uvva1 A:257-277,307-327,329-339 2r8g d2r8ga1 A:257-277,307-327,329-339 2jef d2jefa1 A:257-277,307-327,329-339 2bqr d2bqra1 A:257-277,307-327,329-339 2c22 d2c22a1 A:257-277,307-327,329-339 2uvr d2uvra1 A:257-277,307-327,329-339 2c28 d2c28a1 A:257-277,307-327,329-339 2bq3 d2bq3a1 A:257-277,307-327,329-339 2br0 d2br0a1 A:257-277,307-327,329-339 2jeg d2jega1 A:257-277,307-327,329-339 2c2r d2c2ra1 A:257-277,307-327,329-339 2c2d d2c2da1 A:257-277,307-327,329-339 1jih d1jiha1 A:408-435,468-489,494-505 1t3n d1t3nb1 B:745-756,796-811,826-832 1k1q d1k1qb1 B:258-278,307-327,330-340 1t3n d1t3na1 A:316-336,375-395,404-412 2v9w d2v9wa1 A:257-277,307-327,329-339 2r8k d2r8kb1 B:408-435,468-489,494-505 1k1q d1k1qa1 A:258-278,307-327,330-340 2au0 d2au0b1 B:1257-1277,1307-1327,1328-1341 2r8k d2r8ka1 A:408-435,468-489,495-505 1k1s d1k1sa1 A:258-278,307-327,330-340 1s97 d1s97a1 A:257-277,307-327,329-341 2ago d2agoa1 A:257-277,307-327,329-341 1s97 d1s97d1 D:257-277,307-327,329-341 1s9f d1s9fb1 B:257-277,307-327,329-341 1s9f d1s9fa1 A:257-277,307-327,329-341 1s0n d1s0na1 A:257-277,307-327,329-341 1jih d1jihb1 B:408-435,465-489,495-505 1s9f d1s9fd1 D:257-277,307-327,329-341 2agp d2agpb1 B:257-277,307-327,329-341 1ryr d1ryra1 A:257-277,307-327,329-341 2uvw d2uvwa1 A:257-277,307-327,329-341 1jx4 d1jx4a1 A:257-277,307-327,329-341 2agp d2agpa1 A:257-277,307-327,329-341 2rdj d2rdja1 A:257-277,307-327,329-341 1n48 d1n48a1 A:257-277,307-327,329-341 1rys d1rysb1 B:257-277,307-327,329-341 1s9f d1s9fc1 C:257-277,307-327,329-341 2atl d2atla1 A:257-277,307-327,329-341 1jxl d1jxla1 A:257-277,307-327,329-341 2asd d2asdb1 B:1257-1277,1307-1327,1329-1341 2imw d2imwp1 P:257-277,307-327,329-341 2asl d2asla1 A:257-277,307-327,329-341 2rdi d2rdia1 A:257-277,307-327,329-341 1n56 d1n56b1 B:257-277,307-327,329-341 2r8j d2r8jb1 B:408-435,469-489,495-509 2asl d2aslb1 B:1257-1277,1307-1327,1329-1341 2atl d2atlb1 B:1257-1277,1307-1327,1329-1341 2r8j d2r8ja1 A:408-435,468-489,495-509 17. d.311.1 ImmE5-like ImmE5-like alpha-beta(2)-alpha-beta; 2 layers, a/b; antiparallel beta-sheet, order 213 2fhz d2fhza1 A:31-45,80-99,101-108 2dfx d2dfxi1 I:30-44,75-98,100-107 19. c.7.1 PFL-like glycyl radical enzymes duplication: the N- and C-terminal halves have similar topologies ! PFL-like glycyl radical enzymes contains: barrel, closed; n=10, S=10; accommodates a hairpin loop inside the barrel 1h7b d1h7ba_ A:250-265,516-531,532-538 1h78 d1h78a_ A:250-265,516-531,532-538 1hk8 d1hk8a_ A:250-265,516-531,532-538 1h7a d1h7aa_ A:249-265,516-531,532-538 1h79 d1h79a_ A:250-265,516-531,532-538 1h16 d1h16a_ A:380-395,677-694,703-710 1h17 d1h17a_ A:380-395,677-694,703-710 2pfl d2pfla_ A:380-395,677-694,703-710 2pfl d2pflb_ B:380-395,677-694,703-710 1h18 d1h18a_ A:380-395,677-694,703-710 1h18 d1h18b_ B:380-395,677-694,703-710 1cm5 d1cm5b_ B:380-395,677-694,703-710 1mzo d1mzoa_ A:380-395,677-694,703-710 1cm5 d1cm5a_ A:380-395,677-694,703-710 1mzo d1mzob_ B:380-395,677-694,703-710 3pfl d3pfla_ A:380-395,677-694,703-710 3pfl d3pflb_ B:380-395,677-694,703-710 1r9e d1r9ea_ A:385-399,712-730,732-738 1r9e d1r9eb_ B:385-399,712-730,732-738 1r9d d1r9db_ B:385-399,712-730,732-738 1r9d d1r9da_ A:385-399,712-730,732-738 1l1l d1l1lb_ B:362-374,657-669,676-680 1l1l d1l1ld_ D:362-374,657-669,676-680 2bq1 d2bq1f2 F:346-362,672-687,689-697 1r8w d1r8wa_ A:385-399,712-730,732-739 1pem d1pema2 A:346-362,672-687,689-697 1l1l d1l1lc_ C:362-374,657-669,676-680 1r8w d1r8wb_ B:385-399,712-730,732-739 1l1l d1l1lb_ B:47-63,71-92,93-97 1l1l d1l1lc_ C:47-63,71-92,93-97 1r9e d1r9ea_ A:453-463,574-585,652-656 1r9d d1r9da_ A:453-463,574-585,652-656 1r9d d1r9db_ B:453-463,574-585,652-656 1r9e d1r9eb_ B:408-419,421-428,434-438 1r8w d1r8wb_ B:408-419,421-428,434-438 1peu d1peua2 A:346-362,672-687,692-697 1peo d1peoa2 A:346-362,672-687,692-697 1peq d1peqa2 A:346-362,672-687,692-697 2pfl d2pflb_ B:153-163,437-448,449-453 2pfl d2pfla_ A:153-163,437-448,449-453 1h18 d1h18a_ A:153-163,437-448,449-453 1cm5 d1cm5a_ A:153-163,437-448,449-453 1h18 d1h18b_ B:153-163,437-448,449-453 1h16 d1h16a_ A:153-163,437-448,449-453 1cm5 d1cm5b_ B:153-163,437-448,449-453 1h17 d1h17a_ A:153-163,437-448,449-453 2bq1 d2bq1e2 E:346-362,672-687,692-697 3pfl d3pfla_ A:153-163,437-448,449-453 3pfl d3pflb_ B:153-163,437-448,449-453 1qhm d1qhma_ A:1153-1163,1438-1448,1449-1453 3r1r d3r1rc2 C:144-156,622-630,641-648 3r1r d3r1ra2 A:144-156,622-630,641-648 3r1r d3r1rb2 B:144-156,622-630,641-648 7r1r d7r1ra2 A:144-156,622-630,641-648 6r1r d6r1ra2 A:144-156,622-630,641-648 6r1r d6r1rb2 B:144-156,622-630,641-648 4r1r d4r1rb2 B:144-156,622-630,641-648 4r1r d4r1rc2 C:144-156,622-630,641-648 4r1r d4r1ra2 A:144-156,622-630,641-648 7r1r d7r1rb2 B:144-156,622-630,641-648 7r1r d7r1rc2 C:144-156,622-630,641-648 1r1r d1r1ra2 A:144-156,622-630,641-648 1r1r d1r1rb2 B:144-156,622-630,641-648 6r1r d6r1rc2 C:144-156,622-630,641-648 1r1r d1r1rc2 C:144-156,622-630,641-648 5r1r d5r1ra2 A:144-156,622-630,641-648 5r1r d5r1rb2 B:144-156,622-630,641-648 5r1r d5r1rc2 C:144-156,622-630,641-648 2r1r d2r1rb2 B:144-156,622-630,641-648 2r1r d2r1ra2 A:144-156,622-630,641-648 2r1r d2r1rc2 C:144-156,622-630,641-648 1rlr d1rlra2 A:144-156,622-630,641-648 1qhm d1qhmb_ B:2153-2163,2438-2448,2449-2453 1l1l d1l1la_ A:362-374,660-669,676-680 1peu d1peua2 A:101-113,589-597,608-614 1peo d1peoa2 A:101-113,589-597,608-614 1peq d1peqa2 A:101-113,589-597,608-614 1rlr d1rlra2 A:394-410,710-725,730-735 3r1r d3r1rc2 C:394-410,710-725,730-735 3r1r d3r1ra2 A:394-410,710-725,730-735 3r1r d3r1rb2 B:394-410,710-725,730-735 2bq1 d2bq1e2 E:101-113,589-597,608-614 1pem d1pema2 A:101-113,589-597,608-614 6r1r d6r1rb2 B:394-410,710-725,730-735 7r1r d7r1ra2 A:394-410,710-725,730-735 6r1r d6r1rc2 C:394-410,710-725,730-735 6r1r d6r1ra2 A:394-410,710-725,730-735 4r1r d4r1rc2 C:394-410,710-725,730-735 4r1r d4r1rb2 B:394-410,710-725,730-735 4r1r d4r1ra2 A:394-410,710-725,730-735 7r1r d7r1rb2 B:394-410,710-725,730-735 7r1r d7r1rc2 C:394-410,710-725,730-735 2bq1 d2bq1f2 F:101-113,589-597,608-614 5r1r d5r1rb2 B:394-410,710-725,730-735 2r1r d2r1rb2 B:394-410,710-725,730-735 2r1r d2r1ra2 A:394-410,710-725,730-735 2r1r d2r1rc2 C:394-410,710-725,730-735 5r1r d5r1rc2 C:394-410,710-725,730-735 5r1r d5r1ra2 A:394-410,710-725,730-735 1r1r d1r1rb2 B:394-410,710-725,730-735 1r1r d1r1ra2 A:394-410,710-725,730-735 1r1r d1r1rc2 C:394-410,710-725,730-735 2ha9 d2ha9b1 B:157-176,371-390,392-401 2ha9 d2ha9a1 A:157-176,371-390,392-401 1qhm d1qhmb_ B:2471-2506,2528-2543,2542-2549 1h16 d1h16a_ A:471-506,528-543,542-550 1h17 d1h17a_ A:471-506,528-543,542-550 1qhm d1qhma_ A:1471-1506,1528-1543,1542-1550 1cm5 d1cm5a_ A:471-506,528-543,542-550 1h18 d1h18a_ A:471-506,528-543,542-550 3pfl d3pflb_ B:471-506,528-543,542-550 1cm5 d1cm5b_ B:471-506,528-543,542-550 1h18 d1h18b_ B:471-506,528-543,542-550 2pfl d2pfla_ A:471-506,528-543,542-550 1mzo d1mzoa_ A:471-506,528-543,542-550 1mzo d1mzob_ B:471-506,528-543,542-550 3pfl d3pfla_ A:471-506,528-543,542-550 2pfl d2pflb_ B:471-506,528-542,542-550 20. d.345.1 NRDP1 C-terminal domain-like NRDP1 C-terminal domain-like alpha-beta-alpha(3)-beta(3); a pseudo barrel beta-sheet of an SH3-like topology, surrounded by helices 2gwf d2gwfb1 B:222-237,239-252,284-289 2fzp d2fzpa1 A:222-237,239-252,284-289 2ogb d2ogbb1 B:222-237,239-252,284-289 2ogb d2ogba1 A:222-237,239-252,284-290 2gwf d2gwff1 F:222-237,239-252,284-290 2gwf d2gwfd1 D:222-237,239-252,284-290 26. d.58.62 Ribosomal protein L10-like consists of globular N-terminal domain, structurally similar to NDK, and the L7/L12-binding C-terminal alpha-helical tail Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 1zav d1zava1 A:58-70,71-79,112-119 1zav d1zava1 A:58-70,71-79,82-88 1zaw d1zawa1 A:58-70,73-81,82-88 28. d.115.1 YrdC/RibB YrdC/RibB core: alpha-beta(2)-alpha-beta-alpha(2)-beta(2)-alpha-beta-alpha-beta; 3 layers; mixed twisted sheet of 7 strands; order 7126354; strands 7 and 1 are parallel to each other 1k7j d1k7ja_ A:71-80,82-93,97-103 1kk9 d1kk9a_ A:71-80,82-93,96-103 1k4p d1k4pa_ A:50-61,110-123,168-174 1k49 d1k49a_ A:50-61,110-123,168-174 1k4o d1k4oa_ A:50-61,110-123,168-174 1k4i d1k4ia_ A:50-61,110-123,168-174 1k4l d1k4la_ A:50-61,110-123,169-174 1g57 d1g57a_ A:51-62,110-123,169-176 1g57 d1g57b_ B:51-62,110-123,169-176 1g58 d1g58b_ B:51-62,110-123,169-176 1pvy d1pvyb_ B:39-51,115-133,179-186 1pvw d1pvwa_ A:39-51,115-133,179-186 1g58 d1g58a_ A:51-62,110-123,169-176 1snn d1snnb_ B:39-51,115-133,179-186 1pvw d1pvwc_ C:39-51,115-133,179-186 1pvy d1pvya_ A:39-51,115-133,179-186 1tks d1tksa_ A:43-54,102-116,160-168 1pvw d1pvwb_ B:39-51,115-133,179-186 1tku d1tkub_ B:43-54,102-116,160-168 1tku d1tkua_ A:43-54,102-116,160-168 2ris d2risa1 A:43-54,102-116,160-168 1tks d1tksb_ B:43-54,102-116,160-168 2riu d2riua1 A:43-54,102-116,160-168 1snn d1snna_ A:39-51,115-133,179-186 29. d.220.1 Metal cation-transporting ATPase, ATP-binding domain N Metal cation-transporting ATPase, ATP-binding domain N unusual fold; core: beta-alpha(2)-beta(3)-alpha(2)-beta(2); 6-stranded antiparallel beta-sheet, order: 165432 1wpg d1wpgb3 B:518-525,538-555,559-568 1wpg d1wpgc3 C:518-525,538-555,559-568 1su4 d1su4a3 A:518-525,538-555,559-568 3b9r d3b9rb3 B:518-525,538-555,559-568 1vfp d1vfpa3 A:518-525,538-555,559-568 1vfp d1vfpb3 B:518-525,538-555,559-568 1t5s d1t5sa3 A:518-525,538-555,559-568 1t5t d1t5ta3 A:518-525,538-555,559-568 3b9r d3b9ra3 A:518-525,538-555,559-568 2zbg d2zbga3 A:518-525,538-555,559-568 2zbd d2zbda3 A:518-525,538-555,559-568 1wpg d1wpgd3 D:518-525,538-555,559-568 1wpg d1wpga3 A:518-525,538-555,559-568 2zbf d2zbfa3 A:517-525,538-555,559-568 2zbe d2zbea3 A:517-525,538-555,559-568 1iwo d1iwob3 B:518-525,538-555,559-568 1iwo d1iwoa3 A:518-525,538-555,559-568 2zbe d2zbeb3 B:517-525,538-555,559-568 1xp5 d1xp5a3 A:518-525,538-555,559-568 3b9b d3b9ba3 A:517-525,538-555,559-568 1kju d1kjua3 A:517-525,538-556,559-568 1mo8 d1mo8a_ A:510-519,531-546,552-560 1q3i d1q3ia_ A:503-511,524-542,543-553 1mo7 d1mo7a_ A:414-429,450-464,587-591 2a29 d2a29a1 A:398-409,413-427,428-436 2a00 d2a00a1 A:398-409,413-427,428-436 3b9r d3b9ra3 A:407-422,439-453,591-601 1su4 d1su4a3 A:407-422,439-453,591-601 1q3i d1q3ia_ A:408-424,443-458,576-587 2zbd d2zbda3 A:407-421,439-453,591-601 1iwo d1iwob3 B:407-422,439-453,591-601 1kju d1kjua3 A:407-422,439-453,591-600 1iwo d1iwoa3 A:407-422,439-453,591-601 1t5t d1t5ta3 A:407-421,439-453,591-601 1t5s d1t5sa3 A:407-421,439-453,591-601 2b8e d2b8eb2 B:445-460,462-476,497-502 2b8e d2b8ec2 C:445-460,462-476,497-502 3b9b d3b9ba3 A:407-421,439-453,591-601 1svj d1svja_ A:397-409,413-427,428-436 1wpg d1wpgc3 C:407-421,439-453,591-601 1vfp d1vfpa3 A:407-421,439-453,591-601 1vfp d1vfpb3 B:407-421,439-453,591-601 2b8e d2b8ea2 A:445-460,462-476,497-502 1wpg d1wpgb3 B:407-421,439-453,591-601 1xp5 d1xp5a3 A:407-421,439-453,591-601 1wpg d1wpga3 A:407-421,439-453,591-601 1wpg d1wpgd3 D:407-421,439-453,591-601 2zbg d2zbga3 A:407-421,439-453,591-601 2zbe d2zbeb3 B:407-421,439-453,591-601 2zbf d2zbfa3 A:407-421,439-453,591-601 3b9r d3b9rb3 B:407-421,439-453,591-601 2zbe d2zbea3 A:407-421,439-453,591-601 1u7q d1u7qa_ A:397-409,413-427,428-436 2b8e d2b8ea2 A:445-460,462-476,538-548 2b8e d2b8ec2 C:502-510,514-528,529-537 1svj d1svja_ A:329-344,346-362,437-447 1svj d1svja_ A:329-344,346-362,390-397 2b8e d2b8eb2 B:503-510,514-528,529-537 1u7q d1u7qa_ A:329-344,346-361,390-397 2b8e d2b8eb2 B:445-460,462-476,538-548 1u7q d1u7qa_ A:329-344,346-361,437-447 2b8e d2b8ec2 C:445-460,462-476,538-548 2a29 d2a29a1 A:329-345,346-361,437-448 1iwo d1iwoa3 A:407-422,439-453,510-517 1iwo d1iwob3 B:407-422,439-453,510-517 2b8e d2b8ea2 A:502-510,514-528,529-537 2a00 d2a00a1 A:329-345,346-361,437-448 2a29 d2a29a1 A:329-345,346-361,390-397 2a00 d2a00a1 A:329-345,346-361,390-397 1kju d1kjua3 A:407-422,439-453,510-517 1su4 d1su4a3 A:407-422,439-453,509-517 1t5t d1t5ta3 A:407-421,439-453,510-517 1wpg d1wpgb3 B:407-421,439-453,510-517 1wpg d1wpgc3 C:407-421,439-453,510-517 3b9r d3b9ra3 A:407-422,439-453,509-517 1t5s d1t5sa3 A:407-421,439-453,510-517 3b9r d3b9rb3 B:407-421,439-453,509-517 1wpg d1wpgd3 D:407-421,439-453,509-517 1wpg d1wpga3 A:407-421,439-453,509-517 2zbg d2zbga3 A:407-421,439-453,509-517 2zbd d2zbda3 A:407-421,439-453,509-517 2zbe d2zbea3 A:407-421,439-453,509-517 2zbe d2zbeb3 B:407-421,439-453,509-517 2zbf d2zbfa3 A:407-421,439-453,509-517 31. d.58.26 GHMP Kinase, C-terminal domain common fold is elaborated with additional secondary structures ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 1mg7 d1mg7a2 A:258-273,279-297,298-306 1mg7 d1mg7b2 B:258-273,279-297,298-306 1wuu d1wuud2 D:299-319,322-336,337-344 1pie d1piea2 A:301-321,324-338,339-346 1wuu d1wuub2 B:299-319,322-336,337-344 1wuu d1wuuc2 C:299-319,322-336,337-344 1wuu d1wuua2 A:299-319,322-336,337-344 1s4e d1s4ef2 F:259-279,282-296,297-303 1s4e d1s4ea2 A:259-279,282-296,297-303 1s4e d1s4ei2 I:259-279,282-296,297-303 1s4e d1s4ed2 D:259-279,282-296,297-303 1s4e d1s4eh2 H:259-279,282-296,297-303 1s4e d1s4ee2 E:259-279,282-296,297-303 1s4e d1s4ec2 C:259-279,284-295,299-303 1kkh d1kkha2 A:237-256,259-274,273-279 1s4e d1s4eb2 B:259-279,282-296,297-303 1vis d1visa2 A:232-251,254-269,268-274 1k47 d1k47a2 A:247-267,271-282,285-291 1k47 d1k47c2 C:247-267,271-282,285-291 1k47 d1k47b2 B:247-267,271-282,285-291 1k47 d1k47e2 E:247-267,271-282,285-291 1k47 d1k47d2 D:247-267,271-282,285-291 1k47 d1k47f2 F:247-267,271-282,285-291 1kvk d1kvka2 A:287-309,312-326,328-332 1fi4 d1fi4a2 A:245-268,275-293,297-301 2r42 d2r42a2 A:287-309,312-326,328-332 1h72 d1h72c2 C:228-240,241-250,252-259 1h73 d1h73a2 A:228-240,241-250,252-259 1h74 d1h74a2 A:228-240,241-250,252-259 1fwk d1fwka2 A:228-240,241-250,252-259 1h74 d1h74c2 C:228-236,241-250,252-259 1fwk d1fwkc2 C:228-240,241-250,252-259 1fwl d1fwla2 A:228-240,241-250,252-259 1fwk d1fwkb2 B:217-228,241-250,252-259 1fwl d1fwlb2 B:217-228,241-250,252-259 1h74 d1h74d2 D:228-237,241-250,252-259 1h74 d1h74b2 B:217-228,241-250,252-259 1fwk d1fwkd2 D:231-240,241-250,252-259 32. d.45.1 ClpS-like ClpS-like beta-alpha(2)-beta-alpha-beta; 2 layers, alpha/beta 2bcw d2bcwb1 B:64-77,79-90,90-97 1ctf d1ctfa_ A:64-77,79-90,90-97 1rqs d1rqsa_ A:64-77,79-90,91-97 1mg9 d1mg9a_ A:39-52,54-69,69-77 1mbu d1mbuc_ C:39-52,54-69,69-77 1mbv d1mbvb_ B:39-52,54-69,69-77 1r6q d1r6qc1 C:39-52,54-69,69-77 1mbx d1mbxc_ C:39-52,54-69,69-77 1lzw d1lzwa_ A:24-37,39-54,54-62 1r6o d1r6oc1 C:39-52,54-69,69-77 1mbu d1mbud_ D:39-52,54-69,69-77 1mbx d1mbxd_ D:39-52,54-69,69-77 1r6q d1r6qd1 D:39-52,54-69,69-77 1r6o d1r6od1 D:39-52,54-69,69-77 2gyc d2gyc52 5:64-77,79-90,92-97 2gya d2gya52 5:64-77,79-90,92-97 1dd4 d1dd4a2 A:69-82,84-95,100-107 1dd3 d1dd3a2 A:69-82,84-95,100-107 36. d.280.1 Sulfolobus fructose-1,6-bisphosphatase-like Sulfolobus fructose-1,6-bisphosphatase-like 4 layers: a/b/b/a; antiparallel beta sheets; similarities to ferredoxin-like fold (scop_cf 54861) in the N-terminal part (1-120) and to the Bacterial S-adenosylmethionine decarboxylase subunit (scop_fa 997656) in the C-terminal part (121-340) 1umg d1umga_ A:135-149,186-197,199-209 39. e.18.1 HydB/Nqo4-like HydB/Nqo4-like 3 domains: (1) all-alpha; (2&3) alpha+beta 2fug d2fugv1 V:74-87,89-106,365-373 2fug d2fug41 4:74-87,89-106,365-373 2fug d2fugd1 D:74-87,89-106,365-373 2fug d2fugm1 M:74-87,89-106,365-373 1wui d1wuil1 L:69-82,84-101,492-500 1ubo d1ubol_ L:69-82,84-101,492-500 1yq9 d1yq9i1 I:53-66,68-85,476-484 1ubt d1ubtl_ L:69-82,84-101,492-500 1ubr d1ubrl_ L:69-82,84-101,492-500 1ubj d1ubjl_ L:69-82,84-101,492-500 1ubh d1ubhl_ L:69-82,84-101,492-500 1ubk d1ubkl_ L:69-82,84-101,492-500 1wuh d1wuhl1 L:69-82,84-101,492-500 1ubu d1ubul_ L:69-82,84-101,492-500 1ubl d1ubll_ L:69-82,84-101,492-500 1wuk d1wukl1 L:69-82,84-101,492-500 1wul d1wull1 L:69-82,84-101,492-500 1wuj d1wujl1 L:69-82,84-101,492-500 1frv d1frvd_ D:53-66,68-85,476-484 1h2r d1h2rl_ L:69-82,84-101,492-500 1e3d d1e3db_ B:59-72,74-91,482-490 1e3d d1e3dd_ D:59-72,74-91,482-490 2frv d2frvj_ J:53-66,68-85,475-484 2frv d2frvh_ H:53-66,68-85,475-484 2frv d2frvd_ D:53-66,68-85,475-484 2frv d2frvf_ F:53-66,68-85,475-484 2frv d2frvb_ B:53-66,68-85,475-484 2frv d2frvl_ L:53-66,68-85,475-484 1yq9 d1yq9h1 H:53-66,68-85,475-484 1cc1 d1cc1l_ L:58-71,73-90,437-446 1frv d1frvb_ B:53-66,68-85,475-484 1ubm d1ubml_ L:69-82,84-101,491-500 1h2a d1h2al_ L:69-82,84-101,491-500 1frf d1frfl_ L:60-73,75-92,488-497 1cc1 d1cc1l_ L:58-71,73-90,413-424 1e3d d1e3dd_ D:59-72,74-91,457-468 1ubj d1ubjl_ L:69-82,84-101,467-478 1frv d1frvb_ B:53-66,68-85,451-462 1ubo d1ubol_ L:69-82,84-101,467-478 1ubr d1ubrl_ L:69-82,84-101,467-478 1ubh d1ubhl_ L:69-82,84-101,467-478 1ubk d1ubkl_ L:69-82,84-101,467-478 1ubt d1ubtl_ L:69-82,84-101,467-478 1wui d1wuil1 L:69-82,84-101,467-478 1ubm d1ubml_ L:69-82,84-101,467-478 1ubu d1ubul_ L:69-82,84-101,467-478 1wuh d1wuhl1 L:69-82,84-101,467-478 1wul d1wull1 L:69-82,84-101,467-478 1wuj d1wujl1 L:69-82,84-101,467-478 1frf d1frfl_ L:60-73,75-92,464-475 1wuk d1wukl1 L:69-82,84-101,467-478 1ubl d1ubll_ L:69-82,84-101,467-478 1e3d d1e3db_ B:95-127,413-432,457-468 1e3d d1e3dd_ D:95-127,413-432,457-468 40. d.198.4 YdhG-like some similarity to YjbR-like (scop_sf 136320) Secretion chaperone-like alpha-beta(3)-alpha-beta(2)-alpha; 2 layers: alpha/beta 2oc6 d2oc6b1 B:0-12,13-32,34-40 2oc6 d2oc6a1 A:0-12,13-32,34-40 2oc6 d2oc6a1 A:0-12,13-32,49-59 2oc6 d2oc6b1 B:0-12,13-32,49-59 2i8d d2i8db1 B:3-12,13-32,49-59 2i8d d2i8da1 A:3-12,13-32,49-59 41. d.282.1 SSo0622-like the dimer, formed in the crystals, is a probable biological unit ! SSo0622-like alpha(2)-beta(2)-alpha-beta-alpha-beta(2)-alpha; 2 layers: a/b; antiparallel beta-sheet: order 21354; strands 1,3 and 5 and the C-terminal helix are longer than other secondary structures 1tlj d1tlja_ A:4-24,27-42,43-52 1tlj d1tljb_ B:5-21,27-42,43-52 44. d.193.1 Hsp33 domain Hsp33 domain 3 layers: beta/alpha/beta; buried helix 1vq0 d1vq0b1 B:20-31,33-54,81-89 1vq0 d1vq0a1 A:20-31,33-54,81-89 1vzy d1vzya1 A:21-33,35-57,83-91 1vzy d1vzyb1 B:22-33,35-57,83-91 1i7f d1i7fa_ A:27-35,40-61,88-97 1hw7 d1hw7a_ A:27-35,40-61,88-97 47. d.90.1 FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like core: (alpha-beta-alpha-beta)2; 3 layers a/b/a; antiparallel beta-sheet: 1243 1oo6 d1oo6b_ B:53-65,68-79,160-165 1ylr d1ylrb1 B:53-65,68-79,160-165 1oo5 d1oo5a_ A:53-65,68-79,160-165 1idt d1idtb_ B:53-65,68-79,160-165 1oon d1oonb_ B:53-65,68-79,159-165 1oo5 d1oo5b_ B:53-67,68-79,159-165 1ooq d1ooqa_ A:53-65,68-78,79-88 1ylu d1ylua1 A:53-65,64-78,160-165 1ylu d1ylub1 B:53-65,64-78,160-165 1yki d1ykib1 B:53-65,64-78,160-165 1yki d1ykic1 C:53-65,64-78,160-165 1nec d1necc_ C:52-64,63-77,159-164 1yki d1ykia1 A:53-65,64-78,160-165 1icu d1icud_ D:53-65,64-78,160-165 1kqc d1kqca_ A:53-65,65-78,160-165 1ylr d1ylra1 A:53-65,64-78,160-165 1kqd d1kqda_ A:53-65,64-78,160-165 1nec d1necd_ D:52-64,63-78,158-164 1icu d1icua_ A:53-65,64-78,160-165 1yki d1ykid1 D:53-65,64-78,160-165 1icr d1icrb_ B:53-65,68-79,159-165 1oo6 d1oo6a_ A:53-65,64-78,160-165 1idt d1idta_ A:53-65,64-78,160-165 1kqc d1kqca_ A:53-65,65-78,79-88 1kqb d1kqbc_ C:53-65,68-78,79-88 1kqb d1kqbb_ B:53-65,64-78,159-165 1nec d1necd_ D:52-64,63-78,78-87 1ds7 d1ds7a_ A:53-65,68-79,159-165 1icu d1icub_ B:53-65,68-78,79-88 1ds7 d1ds7a_ A:53-65,68-79,79-88 1icu d1icub_ B:53-65,68-78,160-165 1kqd d1kqdc_ C:53-65,68-78,79-88 1oo6 d1oo6a_ A:53-65,64-78,79-88 1yki d1ykic1 C:53-65,64-78,79-88 1ylr d1ylra1 A:53-65,64-78,79-88 1kqb d1kqbd_ D:53-65,64-78,159-165 1ds7 d1ds7b_ B:53-67,68-79,159-165 1idt d1idta_ A:53-65,64-78,79-88 1kqc d1kqcc_ C:53-65,68-78,79-88 1kqd d1kqda_ A:53-65,64-78,79-88 1vfr d1vfrb_ B:55-67,70-81,81-90 1kqb d1kqba_ A:53-65,64-78,79-88 1oon d1oonb_ B:53-65,68-79,79-88 1ooq d1ooqb_ B:53-65,68-78,79-88 1icr d1icra_ A:53-65,64-78,79-88 1kqd d1kqdb_ B:53-65,64-78,159-165 1icv d1icvb_ B:53-65,64-78,79-88 1oon d1oona_ A:53-65,64-78,79-88 1kqc d1kqcb_ B:53-65,64-78,159-165 1icv d1icva_ A:53-65,68-78,79-88 1yki d1ykid1 D:53-65,64-78,79-88 1vfr d1vfra_ A:55-69,70-81,81-90 1yki d1ykia1 A:53-65,64-78,79-88 1kqb d1kqba_ A:53-65,64-78,159-165 1kqc d1kqcd_ D:53-65,64-78,159-165 1yki d1ykib1 B:53-65,64-78,79-88 1kqc d1kqcd_ D:53-65,64-78,79-88 1v5y d1v5yb1 B:55-67,70-81,81-90 1kqd d1kqdd_ D:53-65,64-78,159-165 1oo5 d1oo5a_ A:53-65,68-79,79-88 1nec d1neca_ A:52-64,63-77,158-164 1ylu d1ylua1 A:53-65,64-78,79-88 1kqd d1kqdd_ D:53-65,64-78,79-88 1ylr d1ylrb1 B:53-65,68-79,79-88 1ylu d1ylub1 B:53-65,64-78,79-88 1nec d1necb_ B:52-64,63-77,158-164 1v5z d1v5zb1 B:55-69,70-81,81-90 1v5z d1v5za1 A:55-69,70-81,81-90 1icv d1icvb_ B:53-65,64-78,159-165 1icu d1icuc_ C:53-65,68-78,79-88 1kqb d1kqbd_ D:53-65,64-78,79-88 1icv d1icvd_ D:53-65,68-78,79-88 1icu d1icud_ D:53-65,64-78,79-88 1kqc d1kqcb_ B:53-65,64-78,79-88 1v5y d1v5ya1 A:55-69,70-81,81-90 1nec d1necc_ C:52-64,63-77,78-87 1icu d1icua_ A:53-65,64-78,79-88 1nec d1necb_ B:52-64,63-77,78-87 1kqd d1kqdb_ B:53-65,64-78,79-88 1nec d1neca_ A:52-64,63-77,78-87 1icv d1icva_ A:53-65,68-78,159-165 1icr d1icrb_ B:53-65,68-79,79-88 1icv d1icvc_ C:53-65,68-78,160-165 1kqb d1kqbb_ B:53-65,64-78,79-88 2fre d2freb1 B:64-75,75-85,130-136 1icv d1icvc_ C:53-65,68-78,79-88 1kqb d1kqbc_ C:53-65,68-78,159-165 1ooq d1ooqa_ A:53-65,68-78,159-165 2b67 d2b67b1 B:53-62,62-73,148-154 1oon d1oona_ A:53-65,64-78,159-165 1icr d1icra_ A:53-65,64-78,159-165 1oo6 d1oo6b_ B:53-65,68-79,79-88 1idt d1idtb_ B:53-65,68-79,79-88 1kqd d1kqdc_ C:53-65,68-78,159-165 1kqc d1kqcc_ C:53-65,68-78,159-165 1ooq d1ooqb_ B:53-65,68-78,159-165 1icu d1icuc_ C:53-65,68-78,160-165 1ds7 d1ds7b_ B:53-67,68-79,79-88 1oo5 d1oo5b_ B:53-67,68-79,79-88 1icv d1icvd_ D:53-65,68-78,160-165 2b67 d2b67d1 D:53-61,61-72,148-154 2b67 d2b67c1 C:53-61,61-72,148-154 2fre d2freb1 B:64-75,75-85,86-95 2b67 d2b67c1 C:53-61,61-72,73-82 2b67 d2b67a1 A:53-61,61-72,73-82 2ifa d2ifab1 B:55-74,75-93,93-101 2b67 d2b67b1 B:53-62,62-73,73-82 2fre d2frea1 A:64-74,75-85,86-95 2ifa d2ifac1 C:55-74,75-93,143-149 2ifa d2ifab1 B:55-74,75-93,143-149 2ifa d2ifae1 E:55-74,75-93,93-101 2fre d2frea1 A:64-74,75-85,130-136 2ifa d2ifad1 D:55-74,75-93,143-149 2ifa d2ifaa1 A:55-74,75-93,93-101 2b67 d2b67d1 D:53-61,61-72,73-82 2ifa d2ifaf1 F:55-71,75-93,143-149 2ifa d2ifaa1 A:55-74,75-93,143-149 2ifa d2ifac1 C:55-74,75-93,93-101 2ifa d2ifae1 E:55-74,75-93,143-149 2ifa d2ifaf1 F:55-71,75-93,93-102 2ifa d2ifad1 D:55-74,75-93,93-102 1ywq d1ywqa1 A:57-76,77-94,95-103 2fre d2frea1 A:14-21,109-129,130-136 2fre d2freb1 B:14-21,109-129,130-136 2b67 d2b67c1 C:2-11,120-147,148-154 2b67 d2b67b1 B:2-11,120-147,148-154 1vkw d1vkwa_ A:2-10,61-83,84-90 1ywq d1ywqa1 A:7-16,117-144,145-151 2bkj d2bkjb_ B:2-11,97-123,124-130 2bkj d2bkja_ A:2-11,97-123,124-130 1bkj d1bkjb_ B:2-11,97-123,124-130 1bkj d1bkja_ A:2-11,97-123,124-130 1f5v d1f5va_ A:2-11,97-123,124-130 1f5v d1f5vb_ B:2-11,97-123,124-130 2b67 d2b67a1 A:1-11,120-147,148-154 54. d.144.1 Protein kinase-like (PK-like) shares functional and structural similarities with the ATP-grasp fold and PIPK ! Protein kinase-like (PK-like) consists of two alpha+beta domains, C-terminal domain is mostly alpha helical 2r7i d2r7ib1 B:120-128,129-151,161-167 2r7i d2r7ia1 A:120-128,129-151,161-167 2r7i d2r7id1 D:120-128,129-151,161-167 2r7i d2r7ic1 C:120-128,129-151,161-167 3c13 d3c13a1 A:120-128,129-151,161-167 1zog d1zoga1 A:120-128,129-151,161-167 3bqc d3bqca1 A:120-128,129-151,161-167 1cja d1cjaa_ A:130-144,146-157,157-164 1cja d1cjab_ B:130-144,146-157,157-164 1ds5 d1ds5d_ D:120-128,129-151,161-167 1ds5 d1ds5a_ A:120-128,129-151,161-167 1ds5 d1ds5c_ C:120-128,129-151,161-167 1ds5 d1ds5b_ B:120-128,129-151,161-167 2oxd d2oxda1 A:120-128,129-151,161-167 2qc6 d2qc6a1 A:120-128,129-151,161-167 1j91 d1j91a_ A:120-128,129-151,161-167 2oxx d2oxxa1 A:120-128,129-151,161-167 1om1 d1om1a_ A:120-128,129-151,161-167 1m2r d1m2ra_ A:120-128,129-151,161-167 1daw d1dawa_ A:120-128,129-151,161-167 1zoh d1zoha1 A:120-128,129-151,161-167 1day d1daya_ A:120-128,129-151,161-167 1m2p d1m2pa_ A:120-128,129-151,161-167 1m2q d1m2qa_ A:120-128,129-151,161-167 1lpu d1lpua_ A:120-128,129-151,161-167 1f0q d1f0qa_ A:120-128,129-151,161-167 1zoe d1zoea1 A:120-128,129-151,161-167 1e7v d1e7va4 A:903-916,917-943,951-956 2oxy d2oxyb1 B:120-128,129-151,161-167 1j91 d1j91b_ B:120-128,129-151,161-167 1e90 d1e90a4 A:903-916,917-943,951-956 1lp4 d1lp4a_ A:120-128,129-151,161-167 1jam d1jama_ A:120-128,129-151,161-167 2oxy d2oxya1 A:120-128,129-151,161-167 1lr4 d1lr4a_ A:120-128,129-151,161-167 2pvr d2pvra1 A:120-128,129-151,161-167 1m52 d1m52a_ A:322-330,336-358,368-373 1e8w d1e8wa4 A:903-916,917-943,951-956 1e7u d1e7ua4 A:903-916,917-943,951-956 1opj d1opja_ A:341-349,355-377,387-392 1jwh d1jwha_ A:120-128,129-151,161-167 1m52 d1m52b_ B:322-330,336-358,368-373 2hzn d2hzna1 A:322-330,336-358,368-373 1na7 d1na7a_ A:120-128,129-151,161-167 1opl d1oplb2 B:341-349,355-377,387-392 1opl d1opla3 A:341-349,355-377,387-392 1opk d1opka3 A:341-349,355-377,387-392 2ofv d2ofvb1 B:323-330,337-359,369-374 1e8x d1e8xa4 A:903-916,917-943,951-956 2fo0 d2fo0a3 A:341-349,355-377,387-392 1fpu d1fpua_ A:322-330,336-358,368-373 1e8y d1e8ya4 A:903-916,917-943,951-956 1fpu d1fpub_ B:322-330,336-358,368-373 1e8z d1e8za4 A:903-916,917-943,951-956 1fmk d1fmka3 A:345-352,359-381,391-396 1iep d1iepa_ A:322-330,336-358,368-373 1ksw d1kswa3 A:345-352,359-381,391-396 2qoh d2qohb1 B:322-330,336-358,368-373 1iep d1iepb_ B:322-330,336-358,368-373 3lck d3lcka_ A:323-330,337-359,369-374 2qoh d2qoha1 A:322-330,336-358,368-373 1opj d1opjb_ B:341-349,355-377,387-392 2of2 d2of2a1 A:323-330,337-359,369-374 3bym d3byma1 A:323-330,337-359,369-374 2of4 d2of4a1 A:323-330,337-359,369-374 1pjk d1pjka_ A:120-128,129-151,161-167 1mqb d1mqba_ A:699-708,712-734,744-749 1yi6 d1yi6a1 A:345-352,359-381,391-396 2og8 d2og8b1 B:323-330,337-359,369-374 3byu d3byua1 A:323-330,337-359,369-374 2bdf d2bdfb1 B:345-352,359-381,391-396 2zm1 d2zm1a1 A:323-330,337-359,369-374 1k2p d1k2pb_ B:481-488,494-516,526-531 2src d2srca3 A:345-352,359-381,391-396 1sm2 d1sm2b_ B:442-449,455-477,487-492 3bys d3bysa1 A:323-330,337-359,369-374 1k9a d1k9ac3 C:273-282,287-309,319-324 1k9a d1k9ad3 D:273-282,287-309,319-324 1luf d1lufa_ A:661-670,697-719,729-734 2ofu d2ofua1 A:323-330,337-359,369-374 1mqb d1mqbb_ B:699-708,712-734,744-749 1jwh d1jwhb_ B:120-128,129-151,161-167 3c1x d3c1xa1 A:1164-1172,1177-1199,1209-1214 1snu d1snua_ A:442-451,455-477,487-492 2bdf d2bdfa1 A:345-352,359-381,391-396 2h8h d2h8ha3 A:345-352,359-381,391-396 1fgk d1fgkb_ B:568-577,596-618,628-633 3d7u d3d7uc1 C:273-282,287-309,319-324 1k9a d1k9aa3 A:273-282,287-309,319-324 3d7u d3d7ua1 A:273-282,287-309,319-324 1r1w d1r1wa_ A:1164-1172,1177-1199,1209-1214 1he8 d1he8a4 A:903-916,917-943,951-956 2fgi d2fgia_ A:568-577,596-618,628-633 3ds6 d3ds6b1 B:112-120,123-145,155-160 2zm4 d2zm4a1 A:323-330,337-359,369-374 1w84 d1w84a1 A:112-120,123-145,155-160 1sm2 d1sm2a_ A:442-451,455-477,487-492 1k9a d1k9af3 F:273-282,287-309,319-324 1k9a d1k9ae3 E:273-282,287-309,319-324 1w83 d1w83a1 A:112-120,123-145,155-160 1py5 d1py5a_ A:287-296,298-318,338-343 1y57 d1y57a3 A:345-353,359-381,391-396 1agw d1agwb_ B:568-577,596-618,628-633 1fgk d1fgka_ A:568-577,596-618,628-633 2fgi d2fgib_ B:568-577,596-618,628-633 1jpa d1jpaa_ A:714-723,727-749,759-764 2ptk d2ptka3 A:345-353,359-381,391-396 1t45 d1t45a_ A:677-686,765-787,797-802 1jpa d1jpab_ B:714-723,727-749,759-764 1wbv d1wbva1 A:112-120,123-145,155-160 1r0p d1r0pa_ A:1164-1172,1177-1199,1209-1214 1fgi d1fgia_ A:568-577,596-618,628-633 3cth d3ctha1 A:1164-1172,1177-1199,1209-1214 1k9a d1k9ab3 B:273-282,287-309,319-324 1wbn d1wbna1 A:112-120,123-145,155-160 1fgi d1fgib_ B:568-577,596-618,628-633 1agw d1agwa_ A:568-577,596-618,628-633 2zaz d2zaza1 A:112-120,123-145,155-160 1k2p d1k2pa_ A:481-488,494-516,526-531 2zb1 d2zb1a1 A:112-120,123-145,155-160 1wbt d1wbta1 A:112-120,123-145,155-160 1ad5 d1ad5a3 A:345-353,359-381,391-396 3d7z d3d7za1 A:112-120,123-145,155-160 1wbs d1wbsa1 A:112-120,123-145,155-160 1wbo d1wboa1 A:112-120,123-145,155-160 1pkg d1pkgb_ B:677-686,765-787,797-802 3ctj d3ctja1 A:1164-1172,1177-1199,1209-1214 1ad5 d1ad5b3 B:345-353,359-381,391-396 1pmu d1pmua_ A:152-160,162-184,194-199 3ds6 d3ds6d1 D:112-120,123-145,155-160 1qcf d1qcfa3 A:345-353,359-381,391-396 3e92 d3e92a1 A:112-120,123-145,155-160 1qpd d1qpda_ A:323-331,337-359,369-374 1qpe d1qpea_ A:323-331,337-359,369-374 2hck d2hcka3 A:345-353,359-381,391-396 1qpc d1qpca_ A:323-331,337-359,369-374 2zb0 d2zb0a1 A:112-120,123-145,155-160 1w82 d1w82a1 A:112-120,123-145,155-160 1yi6 d1yi6b1 B:345-353,359-381,391-396 1qpj d1qpja_ A:323-331,337-359,369-374 1kob d1kobb_ B:134-141,147-169,179-184 2hk5 d2hk5a1 A:323-331,337-359,369-374 2bdj d2bdja1 A:345-353,359-381,391-396 3d83 d3d83a1 A:112-120,123-145,155-160 2hck d2hckb3 B:345-353,359-381,391-396 3ds6 d3ds6c1 C:112-120,123-145,155-160 1vjy d1vjya_ A:287-296,298-319,338-343 2pl0 d2pl0a1 A:323-331,337-359,369-374 3b2w d3b2wa1 A:323-331,337-359,369-374 1ias d1iasc_ C:287-296,298-319,338-343 2psq d2psqb1 B:571-580,599-621,631-636 2ofv d2ofva1 A:323-331,337-359,369-374 1ias d1iase_ E:287-296,298-319,338-343 1ias d1iasb_ B:287-296,298-319,338-343 1ias d1iasa_ A:287-296,298-319,338-343 1g3n d1g3ne_ E:104-112,118-140,150-155 2b1p d2b1pa1 A:152-160,162-184,194-199 3ce3 d3ce3a1 A:1164-1172,1177-1199,1209-1214 2etm d2etma1 A:506-515,519-541,551-556 1ias d1iasd_ D:287-296,298-319,338-343 2og8 d2og8a1 A:323-331,337-359,369-374 1bi7 d1bi7a_ A:104-112,118-140,150-155 1g3n d1g3na_ A:104-112,118-140,150-155 1koa d1koaa2 A:6023-6030,6036-6058,6068-6072 1b6c d1b6cf_ F:287-296,298-319,338-343 1b6c d1b6cd_ D:287-296,298-319,338-343 1b6c d1b6cb_ B:287-296,298-319,338-343 1b6c d1b6ch_ H:287-296,298-319,338-343 1ouk d1ouka_ A:112-120,123-145,155-160 1byg d1byga_ A:273-282,287-309,320-324 1wbw d1wbwa1 A:112-121,123-145,155-160 1bi8 d1bi8c_ C:104-112,118-140,150-155 1bi8 d1bi8a_ A:104-112,118-140,150-155 1xws d1xwsa_ A:128-137,140-162,172-178 3c9w d3c9wb1 B:109-117,120-142,152-157 2okr d2okra1 A:112-120,123-145,155-160 1pmq d1pmqa_ A:152-160,162-184,194-199 2psq d2psqa1 A:571-580,599-621,631-636 1cm8 d1cm8b_ B:1115-1124,1126-1148,1158-1163 1cm8 d1cm8a_ A:115-124,126-148,158-163 3c9w d3c9wa1 A:109-117,120-142,152-157 1m7q d1m7qa_ A:112-121,123-145,155-160 1jow d1jowb_ B:104-112,118-140,150-155 3bgz d3bgza1 A:128-137,140-162,172-178 1di9 d1di9a_ A:112-121,123-145,155-160 2obj d2obja1 A:128-137,140-162,172-178 3e93 d3e93a1 A:112-121,123-145,155-160 3bv2 d3bv2a1 A:112-120,123-145,155-160 1blx d1blxa_ A:104-112,118-140,150-155 1yhw d1yhwa1 A:351-359,362-384,394-399 1pmv d1pmva_ A:152-160,162-184,194-199 1vr2 d1vr2a_ A:923-935,1001-1023,1033-1038 3bgq d3bgqa1 A:128-137,140-162,172-178 2erk d2erka_ A:109-117,120-142,152-157 3cgo d3cgoa1 A:152-160,162-184,194-199 2zdu d2zdua1 A:152-160,162-184,194-199 1yqj d1yqja1 A:112-121,123-145,155-160 1gjo d1gjoa_ A:571-580,599-621,631-636 2euf d2eufb1 B:104-112,118-140,150-155 1jnk d1jnka_ A:152-160,162-184,194-199 1pmn d1pmna_ A:152-160,162-184,194-199 2exc d2excx1 X:152-160,162-184,194-199 3dcv d3dcva1 A:128-137,140-162,172-178 2zdt d2zdta1 A:152-160,162-184,194-199 1xqz d1xqza_ A:128-137,140-162,172-178 3erk d3erka_ A:109-117,120-142,152-157 3bgp d3bgpa1 A:128-137,140-162,172-178 1snu d1snub_ B:442-451,455-477,487-491 2p33 d2p33a1 A:152-160,162-184,194-199 2f2c d2f2cb1 B:104-112,118-140,150-155 2z7l d2z7la1 A:111-119,122-144,154-159 1ny3 d1ny3a_ A:145-152,159-181,191-196 1snx d1snxb_ B:442-451,455-477,487-491 2ok1 d2ok1a1 A:152-160,162-184,194-199 2o2u d2o2ua1 A:152-160,162-184,194-199 1gol d1gola_ A:109-117,120-142,152-157 4erk d4erka_ A:109-117,120-142,152-157 2o0u d2o0ua1 A:152-160,162-184,194-199 1erk d1erka_ A:109-117,120-142,152-157 1pme d1pmea_ A:111-119,122-144,154-159 1oec d1oeca_ A:571-580,599-621,631-636 3cgf d3cgfa1 A:152-160,162-184,194-199 1uwh d1uwha_ A:535-544,548-570,580-585 2ijm d2ijmb1 B:506-515,519-541,551-555 1xbb d1xbba_ A:455-464,467-489,499-503 1e8y d1e8ya4 A:688-706,837-859,868-873 1r39 d1r39a_ A:112-121,123-145,155-160 1xr1 d1xr1a_ A:128-137,140-162,172-178 1uwh d1uwhb_ B:535-544,548-570,580-585 1mru d1mrua_ A:99-108,111-133,143-148 2ijm d2ijma1 A:506-515,519-541,551-555 1gy3 d1gy3c_ C:86-95,100-122,132-137 1uwj d1uwja_ A:535-544,548-570,580-585 1okv d1okvc_ C:86-95,100-122,132-137 1uwj d1uwjb_ B:535-544,548-570,580-585 1mp8 d1mp8a_ A:506-515,519-541,551-555 1rjb d1rjba_ A:698-710,784-806,816-821 1ukh d1ukha_ A:114-122,124-146,156-160 1xbc d1xbca_ A:455-464,467-489,499-503 1ouy d1ouya_ A:112-121,123-145,155-160 1v0o d1v0ob_ B:85-93,98-120,130-135 1xba d1xbaa_ A:455-464,467-489,499-503 1irk d1irka_ A:1083-1092,1105-1127,1137-1142 1wfc d1wfca_ A:112-121,123-145,155-160 2r9s d2r9sb1 B:152-160,162-184,194-199 1jqh d1jqha_ A:1086-1095,1108-1130,1140-1145 2c68 d2c68a1 A:86-95,100-122,132-137 1o6y d1o6ya_ A:99-108,111-133,143-148 1k3a d1k3aa_ A:1056-1065,1078-1100,1110-1115 1pkd d1pkdc_ C:86-95,100-122,132-137 1mru d1mrub_ B:99-108,111-133,143-148 2c6o d2c6oa1 A:86-95,100-122,132-137 1p38 d1p38a_ A:112-120,123-145,155-160 2c5n d2c5na1 A:86-95,100-122,132-137 1wcc d1wcca1 A:86-95,100-122,132-137 2bal d2bala1 A:112-121,123-145,155-160 1uki d1ukia_ A:114-122,124-146,156-160 2fum d2fuma1 A:99-108,111-133,143-148 1xkk d1xkka_ A:797-806,810-832,842-846 2okr d2okrd1 D:112-121,123-145,155-160 1y8y d1y8ya1 A:86-95,100-122,132-137 2uue d2uuec1 C:86-95,100-122,132-137 1jsu d1jsua_ A:86-95,100-122,132-137 1zyj d1zyja1 A:112-121,123-145,155-160 2uue d2uuea1 A:86-95,100-122,132-137 2fum d2fumb1 B:99-108,111-133,143-148 1h27 d1h27c_ C:86-95,100-122,132-137 2onl d2onlb1 B:112-121,123-145,155-160 1fvv d1fvvc_ C:86-95,100-122,132-137 2onl d2onla1 A:112-121,123-145,155-160 1ywn d1ywna1 A:921-933,999-1021,1031-1036 3dt1 d3dt1a1 A:112-121,123-145,155-160 1pxl d1pxla_ A:86-95,100-122,132-137 1f5q d1f5qa_ A:86-95,100-122,132-137 2etm d2etmb1 B:506-515,519-541,551-555 1h1p d1h1pc_ C:86-95,100-122,132-137 1kob d1koba_ A:134-141,147-169,179-183 1fvr d1fvra_ A:909-919,937-959,969-974 2i40 d2i40c1 C:86-95,100-122,132-137 1fvr d1fvrb_ B:909-919,937-959,969-974 3bu3 d3bu3a1 A:1083-1092,1105-1127,1137-1142 2r9s d2r9sa1 A:152-160,162-184,194-199 3bu5 d3bu5a1 A:1083-1092,1105-1127,1137-1142 2a0c d2a0cx1 X:86-95,100-122,132-137 1m17 d1m17a_ A:773-782,786-808,818-822 1bmk d1bmka_ A:112-120,123-145,155-160 1snx d1snxa_ A:442-451,455-477,487-491 2c5v d2c5va1 A:86-95,100-122,132-137 2zm3 d2zm3a1 A:1086-1095,1108-1130,1140-1145 2j5f d2j5fa1 A:797-806,810-832,842-846 2cch d2ccha1 A:86-95,100-122,132-137 1ol2 d1ol2c_ C:86-95,100-122,132-137 2p2i d2p2ia1 A:923-935,1001-1023,1033-1038 2c5o d2c5oa1 A:86-95,100-122,132-137 1h26 d1h26a_ A:86-95,100-122,132-137 2oj9 d2oj9a1 A:1056-1065,1078-1100,1110-1115 2a4l d2a4la1 A:86-95,100-122,132-137 1jqh d1jqhc_ C:1086-1095,1108-1130,1140-1145 2c5o d2c5oc1 C:86-95,100-122,132-137 3bz3 d3bz3a1 A:506-515,519-541,551-555 1urc d1urca_ A:86-95,100-122,132-137 1ke7 d1ke7a_ A:86-95,100-122,132-137 1oiy d1oiya_ A:86-95,100-122,132-137 3bx5 d3bx5a1 A:112-120,123-145,155-160 1i44 d1i44a_ A:1083-1092,1105-1127,1137-1142 2c5v d2c5vc1 C:86-95,100-122,132-137 1ol2 d1ol2a_ A:86-95,100-122,132-137 1t46 d1t46a_ A:677-689,765-787,797-802 1gih d1giha_ A:86-95,100-122,132-137 1ogu d1ogua_ A:86-95,100-122,132-137 1zz2 d1zz2a1 A:112-121,123-145,155-160 2c6t d2c6tc1 C:86-95,100-122,132-137 2gs2 d2gs2a1 A:773-782,786-808,818-822 1okw d1okwc_ C:86-95,100-122,132-137 1oiu d1oiua_ A:86-95,100-122,132-137 2rg6 d2rg6a1 A:112-121,123-145,155-160 1e7u d1e7ua4 A:688-707,837-859,868-872 2ity d2itya1 A:797-806,810-832,842-846 1jst d1jstc_ C:86-95,100-122,132-137 1nxk d1nxkc_ C:145-153,159-181,191-196 2b54 d2b54a1 A:86-95,100-122,132-137 2c5n d2c5nc1 C:86-95,100-122,132-137 1m14 d1m14a_ A:773-782,786-808,818-822 2gs6 d2gs6a1 A:773-782,786-808,818-822 2p2i d2p2ib1 B:923-935,1001-1023,1033-1038 3bu6 d3bu6a1 A:1083-1092,1105-1127,1137-1142 1p14 d1p14a_ A:1083-1092,1105-1127,1137-1142 1ol1 d1ol1a_ A:86-95,100-122,132-137 1hcl d1hcla_ A:86-95,100-122,132-137 2c5x d2c5xa1 A:86-95,100-122,132-137 1fin d1finc_ C:86-95,100-122,132-137 1h1s d1h1sa_ A:86-95,100-122,132-137 2oza d2ozab1 B:112-121,123-145,155-160 1j7i d1j7ia_ A:97-105,107-125,195-200 2exm d2exma1 A:86-95,100-122,132-137 2iw9 d2iw9a1 A:86-95,100-122,132-137 3bht d3bhta1 A:86-95,100-122,132-137 1bl6 d1bl6a_ A:112-120,123-145,155-160 1h28 d1h28a_ A:86-95,100-122,132-137 2itw d2itwa1 A:797-806,810-832,842-846 1okw d1okwa_ A:86-95,100-122,132-137 1h4l d1h4la_ A:86-95,99-121,131-136 1oi9 d1oi9a_ A:86-95,100-122,132-137 1h28 d1h28c_ C:86-95,100-122,132-137 1gy3 d1gy3a_ A:86-95,100-122,132-137 1urc d1urcc_ C:86-95,100-122,132-137 2b53 d2b53a1 A:86-95,100-122,132-137 2itx d2itxa1 A:797-806,810-832,842-846 1hck d1hcka_ A:86-95,100-122,132-137 1h4l d1h4lb_ B:86-95,99-121,131-136 2b4s d2b4sb1 B:1083-1092,1105-1127,1137-1142 2zm3 d2zm3d1 D:1086-1095,1108-1130,1140-1145 1buh d1buha_ A:86-95,100-122,132-137 2j6m d2j6ma1 A:797-806,810-832,842-846 2b4s d2b4sd1 D:1083-1092,1105-1127,1137-1142 1phk d1phka_ A:110-119,122-144,154-159 2c5x d2c5xc1 C:86-95,100-122,132-137 1nxk d1nxkd_ D:145-153,159-181,191-196 2c6t d2c6ta1 A:86-95,100-122,132-137 2bcj d2bcja3 A:278-287,290-312,322-327 2iw6 d2iw6a1 A:86-95,100-122,132-137 2p55 d2p55a1 A:150-159,162-185,195-200 1unh d1unhb_ B:86-95,99-121,131-136 1bl7 d1bl7a_ A:112-120,123-145,155-160 2z8c d2z8ca1 A:1083-1092,1105-1127,1137-1142 1pkg d1pkga_ A:677-689,765-787,797-802 1e1v d1e1va_ A:86-98,100-122,132-137 1unl d1unla_ A:86-95,99-121,131-136 1h24 d1h24a_ A:86-95,100-122,132-137 1ql6 d1ql6a_ A:110-119,122-144,154-159 1ung d1unga_ A:86-95,99-121,131-136 1ung d1ungb_ B:86-95,99-121,131-136 1f3m d1f3md_ D:351-360,362-384,394-399 3ds6 d3ds6a1 A:112-121,123-145,155-160 2fum d2fumc1 C:99-108,111-133,143-148 1uu9 d1uu9a_ A:166-175,178-200,210-215 1uu8 d1uu8a_ A:166-175,178-200,210-215 1unl d1unlb_ B:86-95,99-121,131-136 1bkx d1bkxa_ A:127-136,139-161,171-176 2bhh d2bhha1 A:86-98,100-122,132-137 1j3h d1j3ha_ A:127-136,139-161,171-176 1jkl d1jkla_ A:100-109,112-134,144-149 1j3h d1j3hb_ B:127-136,139-161,171-176 1muo d1muoa_ A:217-226,229-251,261-266 1a9u d1a9ua_ A:112-121,123-145,155-160 1s9j d1s9ja_ A:150-159,162-185,195-200 1ol1 d1ol1c_ C:86-95,100-122,132-137 1unh d1unha_ A:86-95,99-121,131-136 1rej d1reja_ A:127-136,139-161,171-176 1uu7 d1uu7a_ A:166-175,178-200,210-215 1h25 d1h25a_ A:86-95,100-122,132-137 2fys d2fysb1 B:109-117,120-142,152-156 1f3m d1f3mc_ C:351-360,362-384,394-399 1z5m d1z5ma1 A:166-175,178-200,210-215 1jkk d1jkka_ A:100-109,112-134,144-149 1ig1 d1ig1a_ A:100-109,112-134,144-149 1jst d1jsta_ A:86-95,100-122,132-137 2gcd d2gcdb1 B:111-120,124-146,156-161 1e7v d1e7va4 A:688-707,837-859,868-873 1rek d1reka_ A:127-136,139-161,171-176 1h1q d1h1qa_ A:86-98,100-122,132-137 2clx d2clxa1 A:86-98,100-122,132-137 2pe0 d2pe0a1 A:166-175,178-200,210-215 1u5q d1u5qa_ A:111-120,124-146,156-161 1e8w d1e8wa4 A:688-707,837-859,868-873 2cpk d2cpke_ E:127-136,139-161,171-176 2gtn d2gtna1 A:112-120,123-145,155-160 1e1x d1e1xa_ A:86-98,100-122,132-137 1ym7 d1ym7d3 D:278-287,290-312,322-327 1ym7 d1ym7a3 A:278-287,290-312,322-327 1cmk d1cmke_ E:127-136,139-161,171-176 1pye d1pyea_ A:86-98,100-122,132-137 1xo2 d1xo2b1 B:104-113,118-140,150-155 1re8 d1re8a_ A:127-136,139-161,171-176 1nxk d1nxka_ A:145-153,159-181,191-196 2fum d2fumd1 D:99-108,111-133,143-148 2cjm d2cjmc1 C:86-98,100-122,132-137 2pe1 d2pe1a1 A:166-175,178-200,210-215 2gcd d2gcda1 A:111-120,124-146,156-161 2phk d2phka_ A:110-119,122-144,154-159 1ym7 d1ym7b3 B:278-287,290-312,322-327 1okz d1okza_ A:166-175,178-200,210-215 1u5r d1u5ra_ A:111-120,124-146,156-161 1ym7 d1ym7c3 C:278-287,290-312,322-327 1e90 d1e90a4 A:688-707,837-859,868-873 2c6k d2c6ka1 A:86-98,100-122,132-137 2r7b d2r7ba1 A:166-175,178-200,210-215 1e8x d1e8xa4 A:688-707,837-859,868-873 2fys d2fysa1 A:109-117,120-142,152-156 1l3r d1l3re_ E:127-136,139-161,171-176 1uu3 d1uu3a_ A:166-175,178-200,210-215 1h1w d1h1wa_ A:166-175,178-200,210-215 1s9i d1s9ib_ B:154-163,166-189,199-204 1pw2 d1pw2a_ A:86-98,100-122,132-137 2c6i d2c6ia1 A:86-98,100-122,132-137 2c5y d2c5ya1 A:86-98,100-122,132-137 2bpm d2bpma1 A:86-98,100-122,132-137 1u5q d1u5qb_ B:111-120,124-146,156-161 2c6m d2c6ma1 A:86-98,100-122,132-137 2c1a d2c1aa1 A:127-136,139-161,171-176 1pf8 d1pf8a_ A:86-98,100-122,132-137 1bx6 d1bx6a_ A:127-136,139-161,171-176 2pe2 d2pe2a1 A:166-175,178-200,210-215 1szm d1szma_ A:127-136,139-161,171-176 1b38 d1b38a_ A:86-98,100-122,132-137 2b52 d2b52a1 A:86-98,100-122,132-137 1pxm d1pxma_ A:86-98,100-122,132-137 1jvp d1jvpp_ P:86-98,100-122,132-137 1gz8 d1gz8a_ A:86-98,100-122,132-137 2c69 d2c69a1 A:86-98,100-122,132-137 1pxi d1pxia_ A:86-98,100-122,132-137 1ykr d1ykra1 A:86-98,100-122,132-137 1r78 d1r78a_ A:86-98,100-122,132-137 1ctp d1ctpe_ E:127-136,139-161,171-176 1u5r d1u5rb_ B:111-120,124-146,156-161 1pxk d1pxka_ A:86-98,100-122,132-137 1w98 d1w98a1 A:86-98,100-122,132-137 1yds d1ydse_ E:127-136,139-161,171-176 2f7x d2f7xe1 E:127-136,139-161,171-176 1oky d1okya_ A:166-175,178-200,210-215 2qcs d2qcsa1 A:127-136,139-161,171-176 2bpm d2bpmc1 C:86-98,100-122,132-137 1h0v d1h0va_ A:86-98,100-122,132-137 1h00 d1h00a_ A:86-98,100-122,132-137 2btr d2btra1 A:86-98,100-122,132-137 1ydr d1ydre_ E:127-136,139-161,171-176 1y91 d1y91a1 A:86-98,100-122,132-137 1fmo d1fmoe_ E:127-136,139-161,171-176 1h1s d1h1sc_ C:86-98,100-122,132-137 1e8z d1e8za4 A:688-707,837-859,868-873 1jsv d1jsva_ A:86-98,100-122,132-137 1oit d1oita_ A:86-98,100-122,132-137 1vyw d1vywa_ A:86-98,100-122,132-137 1h27 d1h27a_ A:86-95,100-122,132-137 1uvr d1uvra_ A:166-175,178-200,210-215 2c6l d2c6la1 A:86-98,100-122,132-137 1p2a d1p2aa_ A:86-98,100-122,132-137 2c4g d2c4gc1 C:86-98,100-122,132-137 1atp d1atpe_ E:127-136,139-161,171-176 2b55 d2b55a1 A:86-98,100-122,132-137 1lez d1leza_ A:112-121,123-145,155-159 1u54 d1u54a_ A:212-221,225-247,257-261 1h08 d1h08a_ A:86-98,100-122,132-137 1s9i d1s9ia_ A:154-163,166-189,199-204 1dm2 d1dm2a_ A:86-98,100-122,132-137 2fvd d2fvda1 A:86-98,100-122,132-137 1w0x d1w0xc1 C:86-98,100-122,132-137 1kwp d1kwpa_ A:145-153,159-181,191-196 2cch d2cchc1 C:86-98,100-122,132-137 1cdk d1cdkb_ B:127-136,139-161,171-176 1pxo d1pxoa_ A:86-98,100-122,132-137 1pxp d1pxpa_ A:86-98,100-122,132-137 1szm d1szmb_ B:127-136,139-161,171-176 2c4g d2c4ga1 A:86-98,100-122,132-137 2bhe d2bhea1 A:86-98,100-122,132-137 1ckp d1ckpa_ A:86-98,100-122,132-137 1w8c d1w8ca1 A:86-98,100-122,132-137 1p5e d1p5ec_ C:86-98,100-122,132-137 1pxj d1pxja_ A:86-98,100-122,132-137 1q99 d1q99b_ B:252-261,266-289,299-540 1lew d1lewa_ A:112-121,123-145,155-159 1oi9 d1oi9c_ C:86-98,100-122,132-137 2ds1 d2ds1a1 A:86-98,100-122,132-137 2oza d2ozaa1 A:145-153,159-181,191-196 1di8 d1di8a_ A:86-98,100-122,132-137 1h1q d1h1qc_ C:86-98,100-122,132-137 1ke6 d1ke6a_ A:86-98,100-122,132-137 1ke5 d1ke5a_ A:86-98,100-122,132-137 1q8y d1q8yb_ B:252-261,266-289,299-540 1h07 d1h07a_ A:86-98,100-122,132-137 1fvt d1fvta_ A:86-98,100-122,132-137 1how d1howa_ A:252-261,266-289,299-540 1v1k d1v1ka_ A:86-98,100-122,132-137 1vyz d1vyza_ A:86-98,100-122,132-137 1e9h d1e9hc_ C:86-98,100-122,132-137 1g5s d1g5sa_ A:86-98,100-122,132-137 2uv2 d2uv2a1 A:115-124,128-150,160-165 1ke8 d1ke8a_ A:86-98,100-122,132-137 1u4d d1u4da_ A:212-221,225-247,257-261 1u54 d1u54b_ B:212-221,225-247,257-261 2jfm d2jfma1 A:115-124,128-150,160-165 1he8 d1he8a4 A:688-707,837-859,868-873 1vyw d1vywc_ C:86-98,100-122,132-137 1h0w d1h0wa_ A:86-98,100-122,132-137 1p5e d1p5ea_ A:86-95,100-122,132-136 1ogu d1oguc_ C:86-98,100-122,132-137 1ke9 d1ke9a_ A:86-98,100-122,132-137 1aq1 d1aq1a_ A:86-98,100-122,132-137 1h01 d1h01a_ A:86-98,100-122,132-137 1u46 d1u46a_ A:212-221,225-247,257-261 1fq1 d1fq1b_ B:86-98,100-122,132-136 1b39 d1b39a_ A:86-98,100-122,132-137 2jfl d2jfla1 A:115-124,128-150,160-165 1e9h d1e9ha_ A:86-98,100-122,132-137 2cci d2ccia1 A:86-98,100-122,132-137 1q8z d1q8zb_ B:252-261,266-289,299-540 1fin d1fina_ A:86-95,100-122,132-136 1q97 d1q97b_ B:252-261,266-289,299-540 1h24 d1h24c_ C:86-95,100-122,132-136 1gii d1giia_ A:86-98,100-122,132-137 2duv d2duva1 A:86-98,100-122,132-137 2g9x d2g9xa1 A:86-95,100-122,132-136 1urw d1urwa_ A:86-98,100-122,132-137 1nxk d1nxkb_ B:145-154,159-181,191-196 1oiq d1oiqa_ A:86-98,100-122,132-137 1oir d1oira_ A:86-98,100-122,132-137 1h26 d1h26c_ C:86-98,100-122,132-137 1h25 d1h25c_ C:86-98,100-122,132-137 1gij d1gija_ A:86-98,100-122,132-137 1q8z d1q8za_ A:252-261,266-289,299-540 1a06 d1a06a_ A:102-111,114-136,146-151 1m7n d1m7na_ A:1083-1093,1105-1127,1137-1142 1jks d1jksa_ A:100-109,112-134,144-148 1q99 d1q99a_ A:252-261,266-289,299-540 2iw8 d2iw8a1 A:86-95,100-122,132-136 1h1p d1h1pa_ A:86-95,100-122,132-136 1oiu d1oiuc_ C:86-95,100-122,132-136 1v0b d1v0bb_ B:85-94,98-120,130-135 1ob3 d1ob3a_ A:85-94,98-120,130-135 1v0p d1v0pa_ A:85-94,98-120,130-135 2g9x d2g9xc1 C:86-98,100-122,132-137 1v0o d1v0oa_ A:85-94,98-120,130-135 2onl d2onld1 D:145-153,159-181,191-196 1eh4 d1eh4a_ A:91-100,104-126,136-140 1eh4 d1eh4b_ B:91-100,104-126,136-140 1vzo d1vzoa_ A:138-147,150-172,182-187 1q8y d1q8ya_ A:252-261,266-289,299-540 3blh d3blha1 A:109-117,122-144,154-159 1jqh d1jqhb_ B:1086-1096,1108-1130,1140-1145 1u4d d1u4db_ B:212-220,225-247,257-261 1u46 d1u46b_ B:212-220,225-247,257-261 1v0p d1v0pb_ B:85-94,98-120,130-135 1m7n d1m7nb_ B:1083-1093,1105-1127,1137-1142 1ob3 d1ob3b_ B:85-94,98-120,130-135 2zm3 d2zm3c1 C:1086-1096,1108-1130,1140-1145 2cci d2ccic1 C:86-98,100-122,132-137 1kwp d1kwpb_ B:145-154,159-181,191-196 1fvv d1fvva_ A:86-98,100-122,132-136 1pkd d1pkda_ A:86-98,100-122,132-137 1ir3 d1ir3a_ A:1083-1093,1105-1127,1137-1142 1gag d1gaga_ A:1083-1093,1105-1127,1137-1142 2onl d2onlc1 C:145-153,159-181,191-196 3blq d3blqa1 A:109-117,122-144,154-159 1qmz d1qmzc_ C:86-98,100-122,132-136 1qmz d1qmza_ A:86-98,100-122,132-136 1pxn d1pxna_ A:86-98,100-122,132-137 2bkz d2bkza1 A:86-98,100-122,132-136 1q97 d1q97a_ A:252-261,266-289,299-540 2bkz d2bkzc1 C:86-98,100-122,132-136 2bts d2btsa1 A:86-98,100-122,132-137 1okv d1okva_ A:86-95,100-122,132-136 2zm3 d2zm3b1 B:1086-1096,1108-1130,1140-1145 1h1r d1h1ra_ A:86-98,100-122,132-136 2i40 d2i40a1 A:86-98,100-122,132-136 1oiy d1oiyc_ C:86-98,100-122,132-136 3blr d3blra1 A:109-117,122-144,154-159 2iw6 d2iw6c1 C:86-98,100-122,132-136 1f5q d1f5qc_ C:86-95,100-122,132-136 2iw9 d2iw9c1 C:86-98,100-122,132-136 1rqq d1rqqa_ A:1083-1093,1105-1127,1137-1142 1h1r d1h1rc_ C:86-98,100-122,132-136 1rqq d1rqqb_ B:1083-1093,1105-1127,1137-1142 2cjm d2cjma1 A:86-98,100-122,132-137 2iw8 d2iw8c1 C:86-98,100-122,132-136 1cki d1ckib_ B:91-100,104-126,136-140 1ckj d1ckjb_ B:91-100,104-126,136-140 1v0b d1v0ba_ A:85-94,98-120,130-135 2auh d2auha1 A:1083-1093,1105-1127,1137-1142 1omw d1omwa3 A:278-287,290-312,322-326 1cki d1ckia_ A:91-100,104-126,136-140 1uv5 d1uv5a_ A:138-150,154-176,186-192 1ckj d1ckja_ A:91-100,104-126,136-140 1j1c d1j1cb_ B:638-650,654-676,686-692 1r0e d1r0ea_ A:138-150,154-176,186-192 1j1c d1j1ca_ A:138-150,154-176,186-192 1j1b d1j1bb_ B:638-650,654-676,686-692 1j1b d1j1ba_ A:138-150,154-176,186-192 1pyx d1pyxb_ B:138-150,154-176,186-192 1r0e d1r0eb_ B:138-150,154-176,186-192 1gng d1gnga_ A:138-150,154-176,186-192 1q4l d1q4lb_ B:138-150,154-176,186-192 1q41 d1q41b_ B:138-150,154-176,186-192 1q5k d1q5kb_ B:138-150,154-176,186-192 1q5k d1q5ka_ A:138-150,154-176,186-192 2csn d2csna_ A:91-100,104-126,136-140 1pyx d1pyxa_ A:138-150,154-176,186-192 1gng d1gngb_ B:138-150,154-176,186-192 1i09 d1i09b_ B:138-150,154-176,186-192 1q3d d1q3db_ B:138-150,154-176,186-192 1csn d1csna_ A:91-100,104-126,136-140 1h8f d1h8fb_ B:138-150,154-176,186-192 1q3w d1q3wb_ B:138-150,154-176,186-192 1q4l d1q4la_ A:138-150,154-176,186-192 1h8f d1h8fa_ A:138-150,154-176,186-192 1q3w d1q3wa_ A:138-150,154-176,186-192 1o9u d1o9ua_ A:138-150,154-176,186-192 1i09 d1i09a_ A:138-150,154-176,186-192 1q41 d1q41a_ A:138-150,154-176,186-192 1q3d d1q3da_ A:138-150,154-176,186-192 2ow3 d2ow3a1 A:138-150,154-176,186-192 2o5k d2o5ka1 A:138-150,154-176,186-192 1tki d1tkia_ A:104-112,117-139,149-153 1tki d1tkib_ B:104-112,117-139,149-153 2ow3 d2ow3b1 B:138-150,154-176,186-191 2jav d2java1 A:93-105,109-131,146-151 1p4o d1p4ob_ B:1056-1072,1078-1100,1110-1115 1p4o d1p4oa_ A:1056-1072,1078-1100,1110-1115 56. e.1.1 Serpins Serpins contains a cluster of helices and a beta-sandwich 1oc0 d1oc0a_ A:6-28,246-255,367-377 1db2 d1db2b_ B:128-145,151-158,162-172 1db2 d1db2a_ A:128-145,151-158,162-172 1iz2 d1iz2a_ A:24-46,259-267,379-389 1dvm d1dvmd_ D:128-145,151-158,162-172 1b3k d1b3kb_ B:7-28,246-254,367-377 1b3k d1b3kd_ D:7-28,246-254,367-377 1b3k d1b3kc_ C:7-28,246-254,367-377 1oo8 d1oo8a_ A:24-46,259-267,379-389 1b3k d1b3ka_ A:7-28,246-254,367-377 2hij d2hiji1 I:49-71,291-299,417-427 1qlp d1qlpa_ A:24-46,259-267,379-389 1dvm d1dvma_ A:128-145,151-158,162-173 1dvm d1dvmc_ C:5-28,246-254,367-377 1e04 d1e04i_ I:49-71,291-299,417-427 1dvm d1dvmb_ B:128-145,151-158,162-173 1db2 d1db2b_ B:4-28,246-254,367-377 1dvm d1dvmd_ D:4-28,246-254,367-377 1db2 d1db2a_ A:4-28,246-254,367-377 1qmn d1qmna_ A:26-46,259-267,385-393 1ath d1athb_ B:48-71,292-299,417-427 1dvm d1dvmb_ B:4-28,246-254,367-377 1dvm d1dvmc_ C:128-145,151-158,162-173 1dvm d1dvma_ A:4-28,246-254,367-377 1jrr d1jrra_ A:5-24,277-286,403-413 2ant d2anti_ I:48-71,291-299,417-427 1psi d1psia_ A:24-46,258-267,379-389 1azx d1azxi_ I:45-71,291-300,417-427 1hp7 d1hp7a_ A:22-46,259-267,379-389 1imv d1imva_ A:29-54,266-273,383-393 1e03 d1e03i_ I:45-71,291-300,417-427 1ant d1antl_ L:46-71,291-299,417-427 2beh d2behi1 I:45-71,291-300,417-427 1jvq d1jvqi_ I:45-71,291-300,417-427 1oph d1opha_ A:21-46,259-267,379-389 1db2 d1db2b_ B:128-145,151-158,317-329 1db2 d1db2a_ A:128-145,151-158,317-329 2b4x d2b4xi1 I:45-71,291-300,417-427 1oyh d1oyhi_ I:45-71,291-300,417-427 1tb6 d1tb6i_ I:45-71,291-299,417-427 1lk6 d1lk6i_ I:45-71,291-300,417-427 1atu d1atua_ A:21-46,259-267,379-389 1by7 d1by7a_ A:3-24,277-286,403-413 1nq9 d1nq9i_ I:45-71,291-300,417-427 1r1l d1r1li_ I:45-71,291-300,417-427 1a7c d1a7ca_ A:3-28,246-254,367-377 1ath d1atha_ A:46-70,291-299,417-427 1t1f d1t1fb1 B:45-71,291-299,417-427 1t1f d1t1fc1 C:45-71,291-299,417-427 1t1f d1t1fa1 A:45-71,291-299,417-427 1ant d1anti_ I:46-71,291-299,417-427 1e05 d1e05i_ I:45-71,291-299,417-427 1br8 d1br8i_ I:46-71,291-299,417-427 2znh d2znhb1 B:45-71,291-299,417-427 1nq9 d1nq9l_ L:45-70,291-299,417-427 1sr5 d1sr5a_ A:45-71,291-299,417-427 3evj d3evji1 I:45-71,291-299,417-427 1dzh d1dzhi_ I:45-71,291-299,417-427 2b5t d2b5ti1 I:45-71,291-299,417-427 1att d1attb_ B:46-72,292-300,418-428 3evj d3evjl1 L:45-71,291-299,417-427 1dzg d1dzgi_ I:45-71,291-299,417-427 1azx d1azxl_ L:45-71,291-299,417-427 1att d1atta_ A:46-72,292-300,418-428 2b4x d2b4xl1 L:43-70,291-299,417-427 1jvq d1jvql_ L:45-71,291-299,417-427 1lk6 d1lk6l_ L:45-71,291-299,417-427 1uhg d1uhgb_ B:2-23,250-259,373-383 1e03 d1e03l_ L:45-71,291-299,417-427 1c5g d1c5ga_ A:26-51,269-277,390-401 1lj5 d1lj5a_ A:3-28,246-254,367-378 2znh d2znha1 A:44-71,291-299,417-427 1dvn d1dvna_ A:3-28,246-254,367-378 2gd4 d2gd4i1 I:45-71,291-299,417-427 2gd4 d2gd4c1 C:45-71,291-299,417-427 2hij d2hijl1 L:43-71,291-299,417-427 1dzg d1dzgl_ L:42-71,291-299,417-427 1xqg d1xqga_ A:-2-24,241-250,363-373 1xqj d1xqja_ A:-2-24,241-250,363-373 1br8 d1br8l_ L:43-71,291-299,417-427 1dzh d1dzhl_ L:43-71,291-299,417-427 1r1l d1r1ll_ L:42-71,291-299,417-427 2ant d2antl_ L:43-71,291-299,417-427 2beh d2behl1 L:43-71,291-299,417-427 1oyh d1oyhl_ L:42-70,291-299,417-427 1sek d1seka_ A:11-39,248-262,375-384 1e05 d1e05l_ L:42-71,291-299,417-427 1e04 d1e04l_ L:42-71,291-299,417-427 1xqg d1xqgb_ B:-2-24,241-250,363-373 1k9o d1k9oi_ I:11-39,248-262,375-384 1jmj d1jmja_ A:102-127,343-354,465-475 1uhg d1uhgd_ D:2-23,248-259,373-383 1jmj d1jmjb_ B:102-127,343-354,465-475 1uhg d1uhga_ A:2-23,248-259,373-383 1jmo d1jmoa_ A:102-127,343-354,465-475 1jti d1jtia_ A:2-23,248-259,373-383 1ova d1ovad_ D:25-46,256A-267,379-389 1jti d1jtib_ B:2-23,248-259,373-383 1ova d1ovaa_ A:25-46,256A-267,379-389 1ova d1ovac_ C:25-46,256A-267,379-389 1ova d1ovab_ B:25-46,256A-267,379-389 1kct d1kcta_ A:21-46,259-267,380-388 1uhg d1uhgc_ C:2-23,248-259,373-383 1jrr d1jrra_ A:5-24,287-296,403-413 1uhg d1uhgc_ C:2-23,260-269,373-383 1uhg d1uhgb_ B:2-23,260-269,373-383 1uhg d1uhgd_ D:2-23,260-269,373-383 1uhg d1uhga_ A:2-23,260-269,373-383 1ova d1ovaa_ A:25-46,268-277,379-389 1ova d1ovad_ D:25-46,268-277,379-389 1jti d1jtia_ A:2-23,260-269,373-383 1jti d1jtib_ B:2-23,260-269,373-383 1ova d1ovab_ B:25-46,268-277,379-389 1ova d1ovac_ C:25-46,268-277,379-389 1by7 d1by7a_ A:3-24,287-296,403-413 2hij d2hiji1 I:49-71,300-311,417-427 2beh d2behi1 I:45-71,300-311,417-427 2gd4 d2gd4i1 I:45-71,300-311,417-427 2gd4 d2gd4c1 C:45-71,300-311,417-427 2b4x d2b4xi1 I:45-71,300-311,417-427 1db2 d1db2b_ B:4-28,255-266,367-377 1db2 d1db2a_ A:4-28,255-266,367-377 1a7c d1a7ca_ A:3-28,255-266,367-377 1jvq d1jvqi_ I:45-71,300-311,417-427 1kct d1kcta_ A:21-46,268-278,380-388 1iz2 d1iz2a_ A:24-46,268-278,379-389 1ath d1athb_ B:48-71,300-311,417-427 1xqj d1xqja_ A:-2-24,251-260,363-373 1lk6 d1lk6i_ I:45-71,300-311,417-427 1e04 d1e04i_ I:49-71,300-311,417-427 1r1l d1r1li_ I:45-71,300-311,417-427 2ant d2anti_ I:48-71,300-311,417-427 1e05 d1e05i_ I:45-71,300-311,417-427 1t1f d1t1fb1 B:45-71,300-311,417-427 1t1f d1t1fa1 A:45-71,300-311,417-427 1t1f d1t1fc1 C:45-71,300-311,417-427 1dzg d1dzgi_ I:45-71,300-311,417-427 1oyh d1oyhi_ I:45-71,300-311,417-427 1br8 d1br8i_ I:46-71,300-311,417-427 1ath d1atha_ A:46-70,300-311,417-427 2znh d2znhb1 B:45-71,300-311,417-427 1sr5 d1sr5a_ A:45-71,300-311,417-427 1nq9 d1nq9i_ I:45-71,300-311,417-427 1jmj d1jmjb_ B:102-127,355-366,465-475 1azx d1azxi_ I:45-71,300-311,417-427 1ant d1antl_ L:46-71,300-311,417-427 1e03 d1e03i_ I:45-71,300-311,417-427 2b5t d2b5ti1 I:45-71,300-311,417-427 1oph d1opha_ A:21-46,268-279,379-389 1jmj d1jmja_ A:102-127,355-366,465-475 1psi d1psia_ A:24-46,268-279,379-389 1atu d1atua_ A:21-46,268-278,379-389 1ant d1anti_ I:46-71,300-311,417-427 1k9o d1k9oi_ I:11-39,261-272,375-384 1qlp d1qlpa_ A:24-46,268-279,379-389 2znh d2znha1 A:44-71,300-311,417-427 3evj d3evjl1 L:45-71,300-311,417-427 3evj d3evji1 I:45-71,300-311,417-427 1sek d1seka_ A:11-39,261-272,375-384 1tb6 d1tb6i_ I:45-71,300-311,417-427 2b4x d2b4xl1 L:43-70,300-311,417-427 1lk6 d1lk6l_ L:45-71,300-311,417-427 1dzh d1dzhi_ I:45-71,300-311,417-427 1hp7 d1hp7a_ A:22-46,268-279,379-389 1jvq d1jvql_ L:45-71,300-311,417-427 1oo8 d1oo8a_ A:24-46,268-279,379-389 1oyh d1oyhl_ L:42-70,300-311,417-427 2hij d2hijl1 L:43-71,300-311,417-427 1br8 d1br8l_ L:43-71,300-311,417-427 1dzh d1dzhl_ L:43-71,300-311,417-427 1dzg d1dzgl_ L:42-71,300-311,417-427 1r1l d1r1ll_ L:42-71,300-311,417-427 1att d1attb_ B:46-72,301-312,418-428 2ant d2antl_ L:43-71,300-311,417-427 1e04 d1e04l_ L:42-71,300-311,417-427 1e05 d1e05l_ L:42-71,300-311,417-427 57. d.133.1 Molybdenum cofactor-binding domain duplication: consists of 4 structural repeats arranged in 2 lobes ! contains one left-hand beta-alpha-beta unit per lobe ! Molybdenum cofactor-binding domain beta(2)-alpha-beta-alpha-beta; 2 layers: a/b; mixed sheet: order 1243: crossing loops 1rm6 d1rm6d2 D:383-392,409-423,434-446 1rm6 d1rm6a2 A:383-392,409-423,434-446 1sb3 d1sb3d2 D:383-392,409-423,434-446 1sb3 d1sb3a2 A:383-392,409-423,434-446 1t3q d1t3qe2 E:396-405,425-438,453-467 1t3q d1t3qb2 B:396-405,425-438,453-467 1n62 d1n62b2 B:413-422,442-455,476-491 1n62 d1n62e2 E:413-422,442-455,476-491 1jrp d1jrpb2 B:367-376,413-426,443-457 1jrp d1jrpd2 D:367-376,413-426,443-457 1jrp d1jrpf2 F:367-376,413-426,443-457 1n60 d1n60b2 B:413-422,442-455,476-491 1jro d1jrod2 D:367-376,413-426,443-457 1ffu d1ffub2 B:410-419,439-452,470-485 1n60 d1n60e2 E:413-422,442-455,476-491 1jro d1jrof2 F:367-376,412-426,443-457 1jrp d1jrph2 H:367-376,413-426,443-457 1ffv d1ffvb2 B:410-419,439-452,470-485 1jro d1jroh2 H:367-376,412-426,443-457 1jro d1jrob2 B:367-376,412-426,443-457 1zxi d1zxib2 B:413-422,442-455,476-491 1n63 d1n63b2 B:413-422,442-455,476-491 1n61 d1n61b2 B:413-422,442-455,476-491 1n63 d1n63e2 E:413-422,442-455,476-491 1n61 d1n61e2 E:413-422,442-455,476-491 1vdv d1vdvb5 B:937-946,962-976,993-1007 1vdv d1vdva5 A:937-946,962-976,993-1007 1ffv d1ffve2 E:410-419,439-452,470-485 1n5w d1n5wb2 B:413-422,442-455,476-491 1ffu d1ffue2 E:410-419,439-452,470-485 1n5w d1n5we2 E:413-422,442-455,476-491 1n5x d1n5xb5 B:937-946,962-976,993-1008 1n5x d1n5xa5 A:937-946,962-976,993-1008 3b9j d3b9jc2 C:937-946,962-976,993-1008 1fo4 d1fo4b5 B:937-946,962-976,993-1008 1v97 d1v97b5 B:937-946,962-976,993-1008 1v97 d1v97a5 A:937-946,962-976,993-1008 1fo4 d1fo4a5 A:937-946,962-976,993-1008 1dgj d1dgja4 A:560-569,585-609,612-626 1fiq d1fiqc2 C:937-946,962-976,993-1008 1sij d1sija4 A:558-567,583-593,610-624 1vlb d1vlba4 A:558-567,583-593,610-624 1vlb d1vlba4 A:558-567,592-607,610-624 1sij d1sija4 A:558-567,592-607,610-624 1jrp d1jrph2 H:367-376,426-442,443-457 1jrp d1jrpd2 D:367-376,426-442,443-457 1jrp d1jrpf2 F:367-376,426-442,443-457 1jro d1jrof2 F:367-376,426-442,443-457 1jrp d1jrpb2 B:367-376,426-442,443-457 1jro d1jrod2 D:367-376,426-442,443-457 1jro d1jroh2 H:367-376,426-442,443-457 1jro d1jrob2 B:367-376,426-442,443-457 1vdv d1vdva5 A:937-946,976-992,993-1007 1vdv d1vdvb5 B:937-946,976-992,993-1007 1fo4 d1fo4a5 A:937-946,976-992,993-1008 1v97 d1v97b5 B:937-946,976-992,993-1008 1v97 d1v97a5 A:937-946,976-992,993-1008 1fo4 d1fo4b5 B:937-946,976-992,993-1008 1n5x d1n5xb5 B:937-946,976-992,993-1008 1n5x d1n5xa5 A:937-946,976-992,993-1008 3b9j d3b9jc2 C:937-946,976-992,993-1008 58. d.211.2 Plakin repeat repeats associate forming globular subdomains ! beta-hairpin-alpha-hairpin repeat multiple repeats of beta(2)-alpha(2) motif 1lm5 d1lm5a_ A:2632-2640,2643-2658,2800-2806 1lm5 d1lm5b_ B:2632-2640,2643-2658,2798-2806 1lm7 d1lm7a_ A:2273-2281,2284-2299,2439-2448 1lm7 d1lm7b_ B:2273-2281,2284-2299,2439-2448 1lm5 d1lm5b_ B:2632-2640,2643-2658,2773-2778 1lm5 d1lm5a_ A:2632-2640,2643-2658,2773-2778 59. d.346.1 SARS Nsp1-like SARS Nsp1-like complex alpha+beta fold; contains mixed beta-sheet barrel, n=6, S=10 2hsx d2hsxa1 A:46-54,83-90,91-99 2gdt d2gdta1 A:46-54,83-90,91-99 62. e.53.1 QueA-like QueA-like 2 domains; d1 (1-64,174-335) [alpha/beta; 3 layers, a/b/a; mixed beta sheet of 9 strands, order: 219863457; strands 1, 5 and 8 are antiparallel to the rest]; d2 (65-142) [all-beta; barrel, closed (n=6, S=10); greek-key; topologically similar to the split barrel fold (scop_cf 50474) 1vky d1vkyb_ B:296-307,307-322,330-335 1vky d1vkya_ A:296-307,307-322,330-335 1wdi d1wdia_ A:306-317,317-332,340-345 63. c.117.1 Amidase signature (AS) enzymes Amidase signature (AS) enzymes possible duplication: the topologies of N- and C-terminal halves are similar; 3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213549A867 (A=10); strands from 5 to 9 are antiparallel to the rest 1mt5 d1mt5b_ B:92-112,118-128,179-186 2gi3 d2gi3a1 A:250-257,259-277,382-388 1mt5 d1mt5o_ O:92-112,118-128,179-186 1mt5 d1mt5f_ F:92-112,118-128,179-186 1mt5 d1mt5i_ I:92-112,118-128,179-186 1mt5 d1mt5g_ G:92-112,118-128,179-186 1mt5 d1mt5m_ M:92-112,118-128,179-186 1mt5 d1mt5a_ A:92-112,118-128,179-186 1mt5 d1mt5c_ C:92-112,118-128,179-186 1mt5 d1mt5j_ J:92-112,118-128,179-186 1mt5 d1mt5b_ B:92-112,118-128,137-143 1mt5 d1mt5m_ M:92-112,118-128,137-142 1mt5 d1mt5j_ J:92-112,118-128,137-142 1mt5 d1mt5o_ O:92-112,118-128,137-142 1mt5 d1mt5f_ F:92-112,118-128,137-142 1mt5 d1mt5i_ I:92-112,118-128,137-142 1mt5 d1mt5a_ A:92-112,118-128,137-142 1mt5 d1mt5p_ P:92-112,118-128,137-142 1mt5 d1mt5c_ C:92-112,118-128,137-142 1mt5 d1mt5g_ G:92-112,118-128,137-142 1mt5 d1mt5l_ L:92-112,120-128,179-186 1mt5 d1mt5e_ E:92-112,120-128,179-186 1mt5 d1mt5k_ K:92-112,120-128,179-186 1och d1ochb_ B:154-164,358-369,370-381 1o9q d1o9qb_ B:154-164,358-369,370-381 1mt5 d1mt5d_ D:92-112,120-128,179-186 1mt5 d1mt5n_ N:92-112,120-128,179-186 1mt5 d1mt5l_ L:92-112,120-128,137-142 2df4 d2df4a1 A:21-37,47-65,72-79 1obl d1oblb_ B:154-164,358-369,369-381 1mt5 d1mt5h_ H:92-112,120-128,179-186 1obi d1obib_ B:154-164,358-369,369-381 2g5h d2g5ha1 A:21-37,47-65,72-79 1mt5 d1mt5e_ E:92-112,120-128,137-143 2f2a d2f2aa1 A:21-37,47-65,72-79 1mt5 d1mt5k_ K:92-112,120-128,137-142 2dqn d2dqna1 A:21-37,47-65,74-79 1mt5 d1mt5d_ D:92-112,120-128,137-142 1mt5 d1mt5h_ H:92-112,120-128,137-142 1mt5 d1mt5n_ N:92-112,120-128,137-143 2g5i d2g5ia1 A:21-37,47-65,115-123 1m22 d1m22a_ A:225-235,471-480,480-492 1m22 d1m22b_ B:225-235,471-480,480-492 1m21 d1m21a_ A:225-235,471-480,481-492 1m21 d1m21b_ B:225-235,471-480,481-492 2g5h d2g5ha1 A:21-37,47-65,115-123 2f2a d2f2aa1 A:21-37,47-65,115-123 2g5i d2g5ia1 A:21-37,47-65,73-80 2df4 d2df4a1 A:21-37,47-65,115-123 2dqn d2dqna1 A:21-37,47-65,116-123 1m21 d1m21b_ B:63-82,92-109,158-166 1m21 d1m21b_ B:63-82,92-109,117-124 1m22 d1m22b_ B:63-84,92-109,158-166 1m22 d1m22a_ A:63-84,92-109,158-166 1m21 d1m21a_ A:63-84,92-109,158-166 1mt5 d1mt5l_ L:37-67,92-112,113-118 1m22 d1m22a_ A:63-84,92-109,117-124 1m22 d1m22b_ B:63-84,92-109,117-124 1m21 d1m21a_ A:63-84,92-109,117-124 1mt5 d1mt5h_ H:37-67,92-112,113-118 1mt5 d1mt5g_ G:37-67,92-112,113-118 1mt5 d1mt5k_ K:37-67,92-112,113-118 1mt5 d1mt5p_ P:37-67,92-112,113-118 1mt5 d1mt5f_ F:37-67,92-112,113-118 1mt5 d1mt5a_ A:37-67,92-112,113-118 1mt5 d1mt5e_ E:37-67,92-112,113-118 1mt5 d1mt5j_ J:37-67,92-112,113-118 1mt5 d1mt5n_ N:37-67,92-112,113-118 1mt5 d1mt5d_ D:37-67,92-112,113-118 1mt5 d1mt5o_ O:37-67,92-112,113-118 1mt5 d1mt5c_ C:37-67,92-112,113-118 1mt5 d1mt5b_ B:37-67,92-112,113-118 1mt5 d1mt5i_ I:37-67,92-112,113-118 1mt5 d1mt5m_ M:37-67,92-112,113-118 64. d.91.1 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 alpha-beta-alpha(2)-beta(3)-alpha; 3 layers a/b/a; antiparallel beta-sheet: 4123 1dt9 d1dt9a3 A:6-28,373-382,388-393 1dt9 d1dt9a3 A:44-63,64-86,122-128 1dt9 d1dt9a3 A:44-63,64-86,91-103 67. a.129.1 GroEL equatorial domain-like duplication: two 4-helical subdomains are related by a pseudo dyad passing through the ATP-binding site ! GroEL equatorial domain-like multihelical; 8 helices arranged in 2 parallel layers 1a6d d1a6db1 B:428-454,456-471,475-480 1pcq d1pcqa1 A:448-459,461-473,476-481 1pcq d1pcqc1 C:448-459,461-473,476-481 1pcq d1pcqg1 G:448-459,461-473,476-481 1pcq d1pcqd1 D:448-459,461-473,476-481 1pcq d1pcqf1 F:448-459,461-473,476-481 1pcq d1pcqe1 E:448-459,461-473,476-481 1pcq d1pcqb1 B:448-459,461-473,476-481 1pf9 d1pf9f1 F:448-459,461-473,476-481 1kpo d1kpox1 X:448-459,461-473,476-481 1pf9 d1pf9a1 A:448-459,461-473,476-481 1j4z d1j4zg1 G:448-459,461-473,476-481 1j4z d1j4zj1 J:448-459,461-473,476-481 1j4z d1j4ze1 E:448-459,461-473,476-481 1kpo d1kpo11 1:448-459,461-473,476-481 1j4z d1j4za1 A:448-459,461-473,476-481 1j4z d1j4zi1 I:448-459,461-473,476-481 1pf9 d1pf9c1 C:448-459,461-473,476-481 1kpo d1kpor1 R:448-459,461-473,476-481 1kpo d1kpoy1 Y:448-459,461-473,476-481 1kpo d1kpou1 U:448-459,461-473,476-481 1kpo d1kpoo1 O:448-459,461-473,476-481 1j4z d1j4zf1 F:448-459,461-473,476-481 1j4z d1j4zm1 M:448-459,461-473,476-481 1j4z d1j4zb1 B:448-459,461-473,476-481 1j4z d1j4zd1 D:448-459,461-473,476-481 1kpo d1kpov1 V:448-459,461-473,476-481 1kpo d1kpot1 T:448-459,461-473,476-481 1kpo d1kpoz1 Z:448-459,461-473,476-481 1kpo d1kpop1 P:448-459,461-473,476-481 1j4z d1j4zn1 N:448-459,461-473,476-481 1kpo d1kpow1 W:448-459,461-473,476-481 1kpo d1kpo21 2:448-459,461-473,476-481 1pf9 d1pf9e1 E:448-459,461-473,476-481 1j4z d1j4zl1 L:448-459,461-473,476-481 1j4z d1j4zh1 H:448-459,461-473,476-481 1j4z d1j4zc1 C:448-459,461-473,476-481 1kpo d1kpoq1 Q:448-459,461-473,476-481 1kpo d1kpos1 S:448-459,461-473,476-481 1j4z d1j4zk1 K:448-459,461-473,476-481 1aon d1aonf1 F:448-459,461-473,476-481 1kp8 d1kp8h1 H:448-459,461-473,476-481 1a6e d1a6eb1 B:428-454,456-471,475-480 1kp8 d1kp8g1 G:448-459,461-473,476-481 1kp8 d1kp8k1 K:448-459,461-473,476-481 1kp8 d1kp8j1 J:448-459,461-473,476-481 1aon d1aonl1 L:448-459,461-473,476-481 1aon d1aonj1 J:448-459,461-473,476-481 1pcq d1pcqm1 M:448-459,461-473,476-481 1kp8 d1kp8a1 A:448-459,461-473,476-481 1aon d1aoni1 I:448-459,461-473,476-481 1kp8 d1kp8c1 C:448-459,461-473,476-481 1kp8 d1kp8d1 D:448-459,461-473,476-481 1pcq d1pcqk1 K:448-459,461-473,476-481 1kp8 d1kp8n1 N:448-459,461-473,476-481 1kp8 d1kp8l1 L:448-459,461-473,476-481 1pcq d1pcqh1 H:448-459,461-473,476-481 1pcq d1pcql1 L:448-459,461-473,476-481 1kp8 d1kp8i1 I:448-459,461-473,476-481 1pcq d1pcqi1 I:448-459,461-473,476-481 1kp8 d1kp8f1 F:448-459,461-473,476-481 1aon d1aonm1 M:448-459,461-473,476-481 1aon d1aonn1 N:448-459,461-473,476-481 1aon d1aonk1 K:448-459,461-473,476-481 1aon d1aonh1 H:448-459,461-473,476-481 1pcq d1pcqn1 N:448-459,461-473,476-481 1pcq d1pcqj1 J:448-459,461-473,476-481 1kp8 d1kp8m1 M:448-459,461-473,476-481 1kp8 d1kp8e1 E:448-459,461-473,476-481 1pf9 d1pf9i1 I:448-459,461-473,476-481 1mnf d1mnfd1 D:448-459,461-473,476-481 1mnf d1mnfb1 B:448-459,461-473,476-481 1pf9 d1pf9m1 M:448-459,461-473,476-481 1kp8 d1kp8b1 B:448-459,461-473,476-481 1mnf d1mnfk1 K:448-459,461-473,476-481 1mnf d1mnfm1 M:448-459,461-473,476-481 1mnf d1mnfa1 A:448-459,461-473,476-481 1mnf d1mnfn1 N:448-459,461-473,476-481 1mnf d1mnfc1 C:448-459,461-473,476-481 1mnf d1mnfl1 L:448-459,461-473,476-481 1mnf d1mnfj1 J:448-459,461-473,476-481 1mnf d1mnff1 F:448-459,461-473,476-481 1mnf d1mnfg1 G:448-459,461-473,476-481 1pf9 d1pf9k1 K:448-459,461-473,476-481 1mnf d1mnfe1 E:448-459,461-473,476-481 1mnf d1mnfi1 I:448-459,461-473,476-481 1mnf d1mnfh1 H:448-459,461-473,476-481 1pf9 d1pf9h1 H:448-459,461-473,476-481 1pf9 d1pf9l1 L:448-459,461-473,476-481 1pf9 d1pf9j1 J:448-459,461-473,476-481 1pf9 d1pf9n1 N:448-459,461-473,476-481 1oel d1oelc5 C:448-459,461-473,476-481 1pf9 d1pf9g1 G:448-459,461-473,476-480 1pf9 d1pf9d1 D:448-459,461-473,476-480 1pf9 d1pf9b1 B:448-459,461-473,476-480 1a6d d1a6da1 A:427-453,455-470,473-478 1aon d1aond1 D:448-459,461-473,476-480 1aon d1aone1 E:448-459,461-473,476-480 1aon d1aonc1 C:448-459,461-473,476-480 1aon d1aonb1 B:448-459,461-473,476-480 1aon d1aona1 A:448-459,461-473,476-480 1aon d1aong1 G:448-459,461-473,476-480 1a6e d1a6ea1 A:427-453,455-470,473-478 1q3s d1q3sc1 C:430-456,458-474,477-481 1q3s d1q3sg1 G:430-456,458-474,477-481 1q2v d1q2va1 A:430-456,458-474,477-482 1q3s d1q3sh1 H:430-456,458-474,477-481 1q2v d1q2vb1 B:431-456,458-474,477-481 1q3s d1q3sf1 F:430-456,458-474,477-481 1q3q d1q3qd1 D:431-456,458-474,477-481 1q3r d1q3rd1 D:431-456,458-474,477-481 1q3q d1q3qb1 B:431-456,458-474,477-481 1q3r d1q3rb1 B:431-456,458-474,477-481 1q3q d1q3qa1 A:430-456,458-474,477-482 1q3s d1q3sb1 B:431-456,458-474,477-481 1q3s d1q3se1 E:431-456,458-474,477-481 1q3s d1q3sd1 D:431-456,458-474,477-481 1q2v d1q2vd1 D:431-456,458-474,477-482 1sjp d1sjpb1 B:429-455,457-468,471-477 1q3s d1q3sa1 A:431-456,458-474,477-481 1q3q d1q3qc1 C:431-456,458-474,477-482 1q2v d1q2vc1 C:431-456,458-474,477-482 1q3r d1q3rc1 C:431-456,458-474,477-482 1q3r d1q3ra1 A:431-456,458-474,477-482 1we3 d1we3m1 M:433-459,461-473,478-482 1we3 d1we3l1 L:433-459,461-473,478-482 1wf4 d1wf4m1 M:433-459,461-473,478-482 1wf4 d1wf4n1 N:433-459,461-473,478-482 1wf4 d1wf4i1 I:433-459,461-473,478-482 1wf4 d1wf4l1 L:433-459,461-473,478-482 1we3 d1we3i1 I:433-459,461-473,478-482 1we3 d1we3h1 H:433-459,461-473,478-482 1we3 d1we3k1 K:433-459,461-473,478-482 1wf4 d1wf4k1 K:433-459,461-473,478-482 1we3 d1we3j1 J:433-459,461-473,478-482 1wf4 d1wf4h1 H:433-459,461-473,478-482 1wf4 d1wf4j1 J:433-459,461-473,478-482 1iok d1iokf1 F:433-459,461-472,477-482 1iok d1iokc1 C:433-459,461-472,477-482 1iok d1ioka1 A:433-459,461-472,477-482 1iok d1ioke1 E:433-459,461-472,477-482 1iok d1iokg1 G:433-459,461-472,477-482 1iok d1iokd1 D:433-459,461-472,477-482 1iok d1iokb1 B:433-459,461-472,477-482 1oel d1oele1 E:433-459,461-473,476-481 1oel d1oelf1 F:433-459,461-473,476-481 1oel d1oelg1 G:433-459,461-473,476-481 1oel d1oela1 A:433-459,461-473,476-481 1grl d1grld1 D:433-459,461-473,476-481 1grl d1grlf1 F:433-459,461-473,476-481 1grl d1grla1 A:433-459,461-473,476-481 1grl d1grlg1 G:433-459,461-473,476-481 1grl d1grlc1 C:433-459,461-473,476-481 1grl d1grle1 E:433-459,461-473,476-481 1grl d1grlb1 B:433-459,461-473,476-481 1we3 d1we3n1 N:433-459,461-473,478-483 1oel d1oelb1 B:433-459,461-473,476-480 1oel d1oeld1 D:433-459,461-473,476-480 1we3 d1we3e1 E:433-459,461-473,478-483 1we3 d1we3g1 G:433-459,461-473,478-483 1we3 d1we3d1 D:433-459,461-473,478-483 1we3 d1we3b1 B:433-459,461-473,478-483 1we3 d1we3f1 F:433-459,461-473,478-483 1wf4 d1wf4b1 B:433-459,461-473,478-483 1wf4 d1wf4e1 E:433-459,461-473,478-483 1we3 d1we3c1 C:433-459,461-473,478-483 1wf4 d1wf4d1 D:433-459,461-473,478-483 1wf4 d1wf4f1 F:433-459,461-473,478-483 1wf4 d1wf4c1 C:433-459,461-473,478-483 1wf4 d1wf4g1 G:433-459,461-473,478-483 1wf4 d1wf4a1 A:433-459,461-473,478-483 1we3 d1we3a1 A:433-459,461-473,478-483 1sjp d1sjpa1 A:429-455,457-468,472-477 1pcq d1pcqa1 A:8-31,88-110,516-524 69. c.83.1 Aconitase iron-sulfur domain Aconitase iron-sulfur domain consists of three similar domains with 3 layers (a/b/a) each; duplication ! core: parallel beta-sheet of 5 strands, order 32145 2b3x d2b3xa2 A:36-50,56-66,74-79 1b0m d1b0ma2 A:165-175,249-264,266-270 1amj d1amja2 A:165-175,249-263,265-270 2b3y d2b3yb2 B:36-50,56-66,74-79 2b3y d2b3ya2 A:36-50,56-66,74-79 1ami d1amia2 A:165-175,249-263,265-270 1b0k d1b0ka2 A:165-175,249-263,265-270 1c97 d1c97a2 A:165-175,249-263,265-270 1aco d1acoa2 A:165-175,249-264,265-270 7acn d7acna2 A:165-175,249-264,265-270 1c96 d1c96a2 A:165-175,249-263,265-270 6acn d6acna2 A:165-175,249-264,265-270 1nis d1nisa2 A:165-175,249-264,265-270 1nit d1nita2 A:165-175,249-264,265-270 1b0j d1b0ja2 A:165-175,249-264,265-270 1fgh d1fgha2 A:165-175,249-264,265-270 5acn d5acna2 A:165-175,249-264,265-270 8acn d8acna2 A:165-175,249-264,265-270 2b3y d2b3ya2 A:205-215,289-300,305-310 2b3y d2b3yb2 B:205-215,289-300,305-310 2b3x d2b3xa2 A:205-215,289-300,305-310 1c96 d1c96a2 A:37-47,165-175,174-181 1c97 d1c97a2 A:37-47,165-175,174-181 6acn d6acna2 A:37-47,165-175,174-181 8acn d8acna2 A:37-47,165-175,174-181 7acn d7acna2 A:37-47,165-175,174-181 1aco d1acoa2 A:37-47,165-175,174-181 1ami d1amia2 A:37-47,165-175,174-181 1fgh d1fgha2 A:37-47,165-175,174-181 5acn d5acna2 A:37-47,165-175,174-181 1nis d1nisa2 A:37-47,165-175,174-181 1nit d1nita2 A:37-47,165-175,174-181 1b0m d1b0ma2 A:37-47,165-175,174-181 1b0k d1b0ka2 A:37-47,165-175,174-181 1amj d1amja2 A:37-47,165-175,174-181 1b0j d1b0ja2 A:37-47,165-175,174-181 71. d.112.1 Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein beta-alpha(2)-beta(3)-alpha(3); 3 layers, alpha/beta/alpha; mixed sheet: order 1342; loop crossing 1xiz d1xizb_ B:19-35,40-53,102-110 1xiz d1xiza_ A:19-35,40-53,102-110 1j6t d1j6ta_ A:20-36,39-54,99-107 1a6j d1a6ja_ A:27-44,46-62,105-114 1a3a d1a3ad_ D:20-36,39-54,99-107 1a3a d1a3ac_ C:20-36,39-54,99-107 1hyn d1hynq_ Q:127-143,146-159,261-271 1a3a d1a3ab_ B:20-36,39-53,99-106 1hyn d1hynr_ R:127-143,146-159,261-271 1hyn d1hynp_ P:127-143,146-159,261-271 1hyn d1hyns_ S:127-143,146-159,261-271 1a3a d1a3aa_ A:20-36,39-54,99-106 1a3a d1a3ad_ D:20-36,39-54,60-65 1j6t d1j6ta_ A:20-36,39-54,60-65 1a6j d1a6jb_ B:27-44,46-61,105-115 1a6j d1a6ja_ A:27-44,46-62,68-78 1a3a d1a3ac_ C:20-36,39-54,60-65 1a3a d1a3ab_ B:20-36,39-53,60-65 1a3a d1a3aa_ A:20-36,39-54,60-65 1xiz d1xizb_ B:19-35,40-53,61-67 1xiz d1xiza_ A:19-35,40-53,61-67 1a6j d1a6jb_ B:27-44,46-61,68-78 73. d.150.1 4'-phosphopantetheinyl transferase possibly related to the IspF ( 4'-phosphopantetheinyl transferase beta-alpha(3)-beta(2) motif 1fth d1fthb_ B:2033-2044,2044-2067,2078-2084 1f80 d1f80c_ C:31-41,42-65,77-83 1fte d1ftec_ C:3033-3044,3044-3067,3078-3084 1ftf d1ftfc_ C:3033-3044,3044-3067,3078-3084 1ftf d1ftfb_ B:2033-2044,2044-2067,2078-2084 1fth d1fthc_ C:3033-3044,3044-3067,3078-3084 1fte d1fteb_ B:2033-2044,2044-2067,2078-2084 1f80 d1f80b_ B:31-42,42-65,76-83 1f7t d1f7td_ D:31-41,42-65,76-83 1f7t d1f7ta_ A:31-41,42-65,76-83 1f7t d1f7tf_ F:31-41,42-65,77-83 1fth d1ftha_ A:1033-1044,1044-1067,1078-1084 1f7l d1f7la_ A:31-41,42-65,77-83 1f80 d1f80a_ A:31-42,42-65,76-83 1f7t d1f7tb_ B:31-42,42-65,77-83 1fte d1ftea_ A:1033-1044,1044-1067,1078-1084 1f7t d1f7tc_ C:31-41,42-65,77-83 1ftf d1ftfa_ A:1033-1044,1044-1067,1078-1084 1f7t d1f7te_ E:31-42,42-65,77-83 74. c.52.4 TBP-interacting protein-like contains extra C-terminal alpha+beta domain of complex fold with an embeded C2H2 zinc-finger Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest 2czr d2czra1 A:-8-5,6-20,21-28 2czr d2czra1 A:85-101,123-134,140-150 78. c.73.1 Carbamate kinase-like the sheet topology is similar to those of undecaprenyl diphosphate synthase and the N-terminal domain of phosphoglycerate kinase ! Carbamate kinase-like 3 layers: a/b/a; mixed (mainly parallel) beta-sheet of 8 strands, order 34215786; strand 8 is antiparallel to the rest 2bty d2btya1 A:217-228,231-248,250-257 1e19 d1e19a_ A:256-267,270-288,290-296 2bty d2btyc1 C:217-228,231-248,250-256 2buf d2bufa1 A:235-246,249-266,268-274 2ap9 d2ap9c1 C:235-246,247-264,266-273 1e19 d1e19b_ B:256-267,270-288,290-296 2bty d2btyb1 B:217-228,231-248,250-256 2brx d2brxb1 B:163-173,185-196,198-203 2brx d2brxa1 A:163-173,185-196,198-203 2bri d2bria1 A:163-172,185-196,198-203 2hmf d2hmfd1 D:253-264,269-280,282-287 2ij9 d2ij9a1 A:159-169,181-192,194-199 2hmf d2hmfb1 B:253-264,269-280,282-287 2hmf d2hmfa1 A:253-264,269-280,282-287 2hmf d2hmfc1 C:253-264,269-280,282-287 2bri d2brib1 B:163-172,185-196,198-203 2ij9 d2ij9b1 B:159-170,181-192,194-199 2bmu d2bmua1 A:163-172,185-196,198-203 2bmu d2bmub1 B:163-172,185-196,198-203 2j0x d2j0xa1 A:244-252,260-271,272-278 2j0w d2j0wa1 A:244-255,260-271,273-278 2j0x d2j0xb1 B:244-252,260-271,272-278 1b7b d1b7bd_ D:250-261,264-283,285-291 1z9d d1z9dc1 C:187-195,200-211,212-219 1z9d d1z9db1 B:187-195,200-211,212-219 1z9d d1z9da1 A:187-195,200-211,212-219 1ybd d1ybdb1 B:188-196,201-212,214-219 2v4y d2v4yc1 C:188-196,201-212,214-219 2v4y d2v4ye1 E:188-196,201-212,214-219 2v4y d2v4yf1 F:188-196,201-212,214-219 2v4y d2v4yd1 D:188-196,201-212,214-219 2v4y d2v4yb1 B:188-196,201-212,214-219 2v4y d2v4ya1 A:188-196,201-212,214-219 1b7b d1b7bc_ C:250-261,264-283,285-290 2cdq d2cdqa1 A:276-284,292-303,305-311 2bne d2bnea1 A:188-196,201-212,214-219 2cdq d2cdqb1 B:276-284,292-303,305-311 1ybd d1ybdc1 C:188-196,201-212,214-219 2bnf d2bnfa1 A:188-196,201-212,214-219 2bne d2bneb1 B:188-196,201-212,214-219 2a1f d2a1fa1 A:185-193,198-209,211-216 2bnd d2bnda1 A:188-196,201-212,214-219 2bnf d2bnfb1 B:188-196,201-212,214-219 2a1f d2a1fb1 B:185-193,198-209,211-216 1ybd d1ybda1 A:188-196,201-212,214-219 2a1f d2a1fe1 E:185-193,198-209,211-216 2a1f d2a1fd1 D:185-193,198-209,211-216 2bnd d2bndb1 B:188-196,201-212,214-219 2hmf d2hmfa1 A:86-115,118-145,147-152 2hmf d2hmfb1 B:86-115,118-145,147-152 2hmf d2hmfc1 C:86-115,118-145,147-152 2hmf d2hmfd1 D:86-115,118-145,147-152 79. d.47.1 Ribosomal L11/L12e N-terminal domain Ribosomal L11/L12e N-terminal domain beta-alpha(2)-beta(2); 2 layers, alpha/beta; antiparallel beta-sheet: order 123 2hgq d2hgql2 L:19-31,33-46,52-59 2hgj d2hgjl2 L:19-31,33-46,52-59 2hgu d2hgul2 L:19-31,33-46,52-61 2h8w d2h8wa2 A:21-28,33-49,51-60 3cjs d3cjsb1 B:20-31,33-49,51-61 3cjr d3cjrb2 B:20-31,33-49,51-61 3cjs d3cjsc1 C:20-31,33-49,51-61 3cjq d3cjqh2 H:20-31,33-49,51-61 2nxn d2nxnb2 B:20-31,33-49,51-61 2b9p d2b9pk2 K:20-32,34-47,52-60 3cjq d3cjqe2 E:21-31,33-49,51-61 3egv d3egvb1 B:21-31,33-49,51-61 3cjq d3cjqb2 B:21-31,33-49,51-61 2bcw d2bcwa1 A:20-32,34-50,50-62 1mms d1mmsa2 A:20-32,34-50,50-62 1yl3 d1yl3l2 L:20-32,34-47,52-61 3cjt d3cjtf2 F:21-31,33-46,51-61 3cjt d3cjtb2 B:21-31,33-46,51-61 3cjt d3cjtn2 N:21-31,33-46,51-61 3cjt d3cjtj2 J:21-31,33-46,51-61 2vhm d2vhmi2 I:23-31,33-49,52-61 2gya d2gyag2 G:23-31,33-46,55-61 2b66 d2b66k2 K:20-29,34-47,52-59 2b9n d2b9nk2 K:20-29,34-47,52-59 2aw4 d2aw4i2 I:23-31,33-49,52-62 2rdo d2rdoi2 I:23-31,33-49,52-62 2awb d2awbi2 I:23-31,33-49,52-62 2j28 d2j28i2 I:23-31,33-49,52-62 1vs6 d1vs6i2 I:23-31,33-49,52-62 2e34 d2e34a2 A:23-31,33-49,50-61 3deg d3degh2 H:23-31,33-49,52-62 2qam d2qami2 I:23-31,33-49,52-62 2qbi d2qbii2 I:23-31,33-49,52-62 2i2t d2i2ti2 I:23-31,33-49,52-62 2z4l d2z4li2 I:23-31,33-49,52-62 2qbe d2qbei2 I:23-31,33-49,52-62 2qba d2qbai2 I:23-31,33-49,52-62 3df2 d3df2i2 I:23-31,33-49,52-62 2qov d2qovi2 I:23-31,33-49,52-62 2qoz d2qozi2 I:23-31,33-49,52-62 1vs8 d1vs8i2 I:23-31,33-49,52-62 2qao d2qaoi2 I:23-31,33-49,52-62 2qbk d2qbki2 I:23-31,33-49,52-62 2qbg d2qbgi2 I:23-31,33-49,52-62 2z4n d2z4ni2 I:23-31,33-49,52-62 2qbc d2qbci2 I:23-31,33-49,52-62 2i2v d2i2vi2 I:23-31,33-49,52-62 2qox d2qoxi2 I:23-31,33-49,52-62 3df4 d3df4i2 I:23-31,33-49,52-62 2qp1 d2qp1i2 I:23-31,33-49,52-62 2e35 d2e35a2 A:23-31,33-49,50-61 2gyc d2gycg2 G:23-31,33-46,56-61 2vhn d2vhni2 I:23-31,33-49,54-62 2zjq d2zjqf2 F:23-31,33-49,51-61 81. b.118.1 FAS1 domain FAS1 domain core: barrel, closed; n=7, S=12; meander 1o70 d1o70a2 A:469-478,480-491,502-508 1nyo d1nyoa_ A:29-37,56-64,65-72 1nyo d1nyoa_ A:29-37,37-49,65-72 1nyo d1nyoa_ A:29-37,37-49,149-157 1o70 d1o70a2 A:469-478,480-491,606-614 1nyo d1nyoa_ A:29-37,56-64,149-157 82. e.29.1 beta and beta-prime subunits of DNA dependent RNA-polymerase The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit ! beta and beta-prime subunits of DNA dependent RNA-polymerase Multidomain subunits of complex domain organization 2a68 d2a68n1 N:1136-1145,1167-1181,1184-1189 1ynj d1ynjd1 D:1136-1145,1167-1181,1184-1189 2be5 d2be5n1 N:1136-1145,1167-1181,1184-1189 2a69 d2a69n1 N:1136-1145,1167-1181,1184-1189 1zyr d1zyrd1 D:1136-1145,1167-1181,1184-1189 2a6e d2a6en1 N:1136-1145,1167-1181,1184-1189 2cw0 d2cw0n1 N:1136-1145,1167-1181,1184-1189 2a6h d2a6hn1 N:1136-1145,1167-1181,1184-1189 2a69 d2a69d1 D:1136-1145,1167-1181,1184-1189 2be5 d2be5d1 D:1136-1145,1167-1181,1184-1189 2a68 d2a68d1 D:1136-1145,1167-1181,1184-1189 2a6h d2a6hd1 D:1136-1145,1167-1181,1184-1189 1ynn d1ynnd1 D:1136-1145,1167-1181,1184-1189 2a6e d2a6ed1 D:1136-1145,1167-1181,1184-1189 2ppb d2ppbd1 D:1136-1145,1167-1181,1184-1189 1iw7 d1iw7d_ D:1136-1145,1167-1181,1184-1189 1iw7 d1iw7n_ N:1136-1145,1167-1181,1184-1189 2o5i d2o5id1 D:1136-1145,1167-1181,1184-1189 1zyr d1zyrn1 N:1136-1145,1167-1181,1184-1189 1i6v d1i6vd_ D:1136-1145,1167-1181,1184-1189 2o5i d2o5in1 N:1136-1145,1167-1181,1184-1189 2ppb d2ppbn1 N:1136-1145,1167-1181,1184-1189 2o5j d2o5jn1 N:1136-1145,1167-1181,1184-1189 3dxj d3dxjn1 N:1136-1145,1167-1181,1184-1189 2o5j d2o5jd1 D:1136-1145,1167-1181,1184-1189 2cw0 d2cw0d1 D:1136-1145,1167-1181,1184-1189 3dxj d3dxjd1 D:1136-1145,1167-1181,1184-1189 1smy d1smyd_ D:1136-1145,1167-1181,1184-1189 1smy d1smyn_ N:1136-1145,1167-1181,1184-1189 2gho d2ghod1 D:845-854,876-890,894-898 2yu9 d2yu9b1 B:750-757,763-777,978-983 2e2j d2e2jb1 B:750-757,763-777,978-983 2e2i d2e2ib1 B:750-757,763-777,978-983 2o5i d2o5im1 M:541-548,554-568,837-842 2nvq d2nvqb1 B:750-757,763-777,978-983 2e2h d2e2hb1 B:750-757,763-777,978-983 2nvx d2nvxb1 B:750-757,763-777,978-983 2nvz d2nvzb1 B:750-757,763-777,978-983 2o5j d2o5jc1 C:541-548,554-568,837-842 2b63 d2b63b1 B:750-757,763-778,978-983 2b8k d2b8kb1 B:750-757,763-777,978-983 3dxj d3dxjm1 M:541-548,554-568,837-842 2o5j d2o5jm1 M:541-548,554-568,837-842 2r92 d2r92b1 B:750-757,763-777,978-983 2r7z d2r7zb1 B:750-757,763-777,978-983 2ja7 d2ja7b1 B:750-757,763-777,978-983 2ja8 d2ja8b1 B:750-757,763-777,978-983 2r93 d2r93b1 B:750-757,763-777,978-983 2ja7 d2ja7n1 N:750-757,763-777,978-983 2a6e d2a6em1 M:541-548,554-568,837-842 2ja5 d2ja5b1 B:750-757,763-777,978-983 1zyr d1zyrm1 M:541-548,554-568,837-842 2ja6 d2ja6b1 B:750-757,763-777,978-983 3dxj d3dxjc1 C:541-548,554-568,837-842 1smy d1smym_ M:541-548,554-568,837-842 1iw7 d1iw7c_ C:541-548,554-568,837-842 1iw7 d1iw7m_ M:541-548,554-568,837-842 2a6e d2a6ec1 C:541-548,554-568,837-842 2ppb d2ppbm1 M:541-548,554-568,837-842 1smy d1smyc_ C:541-548,554-568,837-842 1ynj d1ynjc1 C:541-548,554-568,837-842 2o5i d2o5ic1 C:541-548,554-568,837-842 2cw0 d2cw0m1 M:541-548,554-568,837-842 83. d.229.1 MesJ substrate recognition domain-like MesJ substrate recognition domain-like beta-alpha(2)-beta(3); 2 layers: a/b; antiparallel beta-sheet, order:1432 2e21 d2e21b2 B:263-276,279-293,309-314 2e89 d2e89c2 C:263-276,279-293,309-314 2e21 d2e21c2 C:263-276,279-293,309-314 2e89 d2e89b2 B:263-276,279-293,309-314 2e21 d2e21a2 A:263-276,279-293,309-314 2e21 d2e21d2 D:263-276,279-293,309-314 1ni5 d1ni5a4 A:250-266,271-285,305-312 2e89 d2e89a2 A:263-276,279-293,310-314 1wy5 d1wy5a2 A:263-276,279-293,307-311 1wy5 d1wy5b2 B:263-276,279-292,307-311 84. d.55.1 Ribosomal protein L22 some topological similarity to prokaryotic ribosomal protein L17 ! Ribosomal protein L22 beta-alpha(3)-beta(2); 2 layers: alpha/beta; related to the enolase/MLE N-domain fold by a circular permutation 2qbi d2qbis1 S:28-40,41-63,69-79 2gya d2gyaq1 Q:28-39,41-63,68-79 3df2 d3df2s1 S:28-40,41-63,69-79 1yj9 d1yj9r1 R:39-53,81-103,109-120 1i4j d1i4jb_ B:28-40,41-63,68-86 1i4j d1i4ja_ A:28-39,41-63,68-86 2gyc d2gycq1 Q:28-39,41-63,68-88 2hgq d2hgqv1 V:28-40,43-63,68-87 1bxe d1bxea_ A:28-39,43-63,68-86 2hgu d2hguv1 V:28-40,41-63,68-89 2hgj d2hgjv1 V:28-40,41-63,68-89 2zjp d2zjpp1 P:49-60,62-84,89-109 2z4n d2z4ns1 S:28-40,41-62,69-89 3cf5 d3cf5p1 P:49-60,62-84,89-110 2z4l d2z4ls1 S:28-40,41-62,69-89 2b9n d2b9nw1 W:28-39,41-63,68-89 2zjr d2zjrp1 P:49-60,62-84,89-110 2qao d2qaos1 S:28-40,41-62,69-89 2qam d2qams1 S:28-40,41-62,69-89 2b9p d2b9pw1 W:28-39,41-63,68-89 2b66 d2b66w1 W:28-39,41-63,68-89 2j03 d2j03w1 W:28-39,41-63,68-89 2qbc d2qbcs1 S:28-40,41-63,69-89 2zjq d2zjqp1 P:49-60,62-84,89-110 2j01 d2j01w1 W:28-39,41-63,68-89 2qba d2qbas1 S:28-40,41-63,69-89 2qbk d2qbks1 S:28-40,41-63,69-89 2qp1 d2qp1s1 S:28-39,41-63,69-89 2qoz d2qozs1 S:28-39,41-63,69-89 1xbp d1xbpq1 Q:49-60,62-84,89-111 3dll d3dllp1 P:49-60,62-84,89-110 2qbg d2qbgs1 S:28-40,41-63,69-89 2qbe d2qbes1 S:28-40,41-63,69-89 2vhm d2vhms1 S:28-40,41-63,69-84 3df4 d3df4s1 S:28-40,41-63,69-89 2i2v d2i2vs1 S:28-40,41-63,69-89 2i2t d2i2ts1 S:28-40,41-63,69-89 2qov d2qovs1 S:28-40,41-63,69-89 2qox d2qoxs1 S:28-40,41-63,69-89 1vsa d1vsaq1 Q:28-39,41-63,68-86 3ccj d3ccjr1 R:39-53,81-103,109-129 1vq5 d1vq5r1 R:39-53,81-103,109-129 1vq7 d1vq7r1 R:39-53,81-103,109-129 1vq9 d1vq9r1 R:39-53,81-103,109-129 1vqk d1vqkr1 R:39-53,81-103,109-129 1vqp d1vqpr1 R:39-53,81-103,109-129 1vql d1vqlr1 R:39-53,81-103,109-129 2vhn d2vhns1 S:28-40,41-63,69-89 3ccs d3ccsr1 R:39-53,81-103,109-129 3ccr d3ccrr1 R:39-53,81-103,109-129 3cme d3cmer1 R:39-53,81-103,109-129 1vq6 d1vq6r1 R:39-53,81-103,109-129 1vqn d1vqnr1 R:39-53,81-103,109-129 3ccq d3ccqr1 R:39-53,81-103,109-129 1yhq d1yhqr1 R:39-53,81-103,109-129 1vqm d1vqmr1 R:39-53,81-103,109-129 1yit d1yitr1 R:39-53,81-103,109-129 1yjn d1yjnr1 R:39-53,81-103,109-129 1yij d1yijr1 R:39-53,81-103,109-129 1q81 d1q81s_ S:39-53,81-103,109-129 1m1k d1m1ks_ S:39-53,81-103,109-129 2otj d2otjr1 R:39-53,81-103,109-129 1vq4 d1vq4r1 R:39-53,81-103,109-129 1vq8 d1vq8r1 R:39-53,81-103,109-129 1vqo d1vqor1 R:39-53,81-103,109-129 3cpw d3cpwq1 Q:39-53,81-103,109-129 1m90 d1m90s_ S:39-53,81-103,109-129 1s72 d1s72r_ R:39-53,81-103,109-129 3cma d3cmar1 R:39-53,81-103,109-129 1k73 d1k73s_ S:39-53,81-103,109-129 1yi2 d1yi2r1 R:39-53,81-103,109-129 3ccm d3ccmr1 R:39-53,81-103,109-129 3cc7 d3cc7r1 R:39-53,81-103,109-129 1jj2 d1jj2q_ Q:39-53,81-103,109-129 1nji d1njis_ S:39-53,81-103,109-129 3ccu d3ccur1 R:39-53,81-103,109-129 1q82 d1q82s_ S:39-53,81-103,109-129 1ffk d1ffko_ O:39-53,81-103,109-129 1kc8 d1kc8s_ S:39-53,81-103,109-129 1qvf d1qvfq_ Q:39-53,81-103,109-129 3cc2 d3cc2r1 R:39-53,81-103,109-129 3cd6 d3cd6r1 R:39-53,81-103,109-129 3ccv d3ccvr1 R:39-53,81-103,109-129 1k9m d1k9ms_ S:39-53,81-103,109-129 1yjw d1yjwr1 R:39-53,81-103,109-129 1q7y d1q7ys_ S:39-53,81-103,109-129 1kqs d1kqsq_ Q:39-53,81-103,109-129 1k8a d1k8as_ S:39-53,81-103,109-129 3cce d3ccer1 R:39-53,81-103,109-129 3ccl d3cclr1 R:39-53,81-103,109-129 1kd1 d1kd1s_ S:39-53,81-103,109-129 2otl d2otlr1 R:39-53,81-103,109-129 1n8r d1n8rs_ S:39-53,81-103,109-129 1q86 d1q86s_ S:39-53,81-103,109-129 3cc4 d3cc4r1 R:39-53,81-103,109-129 2qa4 d2qa4r1 R:39-53,81-103,109-129 1qvg d1qvgq_ Q:39-53,81-103,109-129 2qex d2qexr1 R:39-53,81-103,109-129 1vs8 d1vs8s1 S:28-40,44-63,70-88 1yl3 d1yl3s1 S:28-39,41-63,70-88 2j28 d2j28s1 S:28-40,44-63,71-88 2awb d2awbs1 S:28-40,44-63,71-88 85. d.370.1 BTG domain-like BTG domain-like alpha(2)-beta-alpha(2)-beta(3); four-helical bundle, capped at one end by an antiparallel beta-sheet, order:1234 2d5r d2d5rb1 B:24-41,45-65,81-85 2z15 d2z15a1 A:8-26,30-53,66-70 2z15 d2z15c1 C:9-26,30-50,66-70 2z15 d2z15b1 B:6-26,30-53,66-70 2z15 d2z15d1 D:6-26,30-50,66-70 3e9v d3e9va1 A:9-30,32-55,68-72 89. d.294.1 EndoU-like similarity to the RNase A-like superfamily ( EndoU-like comprises several helices and two three-stranded antiparallel beta-sheets; similar architecture to the RNase A-like fold (scop_cf 54075) 2gti d2gtia2 A:259-266,326-338,362-367 2gth d2gtha2 A:259-266,326-338,362-367 2rhb d2rhbc2 C:231-238,298-309,336-344 2rhb d2rhbb2 B:231-238,298-309,336-344 2rhb d2rhba2 A:231-238,298-309,336-344 2h85 d2h85a2 A:231-238,298-309,336-344 2rhb d2rhbd2 D:231-238,298-310,336-344 2c1w d2c1wc1 C:158-166,234-250,274-286 2c1w d2c1wb1 B:158-166,234-250,274-287 2c1w d2c1wa1 A:158-166,234-250,274-287 90. g.52.1 Inhibitor of apoptosis (IAP) repeat Inhibitor of apoptosis (IAP) repeat metal(zinc)-bound alpha+beta fold 1oy7 d1oy7a_ A:86-97,104-112,112-116 3d9u d3d9ua1 A:262-273,280-288,288-292 1i3o d1i3oe_ E:162-171,180-188,188-192 1tw6 d1tw6b_ B:86-97,104-112,112-116 3d9t d3d9tb1 B:262-273,280-288,288-292 1oy7 d1oy7c_ C:86-97,104-112,112-116 3d9t d3d9ta1 A:262-273,280-288,288-292 1jd4 d1jd4a_ A:225-236,243-251,251-255 1oy7 d1oy7b_ B:86-97,104-112,112-116 1oxq d1oxqa_ A:86-97,104-112,112-116 1jd5 d1jd5a_ A:225-236,243-251,251-255 1oy7 d1oy7d_ D:86-97,104-112,112-116 1q4q d1q4qc_ C:225-236,243-251,251-255 1jd4 d1jd4b_ B:225-236,243-251,251-255 1q4q d1q4qd_ D:225-234,243-251,251-255 2i3i d2i3ib1 B:86-97,104-112,112-116 2opz d2opzd1 D:264-273,280-288,288-292 1jd6 d1jd6a_ A:225-236,243-251,251-255 2i3h d2i3hb1 B:86-97,104-112,112-116 1oxq d1oxqb_ B:86-97,104-112,112-116 1oxq d1oxqc_ C:86-97,104-112,112-116 2opz d2opzc1 C:264-273,280-288,288-292 1oxq d1oxqd_ D:86-97,104-112,112-116 1oxn d1oxna_ A:86-97,104-112,112-116 1q4q d1q4qb_ B:225-236,243-251,251-255 1xb1 d1xb1c_ C:264-273,280-288,288-292 2vsl d2vsla1 A:264-275,280-288,288-292 1q4q d1q4qe_ E:225-234,243-251,251-255 1oxn d1oxnc_ C:86-97,104-112,112-116 1xb1 d1xb1e_ E:264-273,280-288,288-292 1oxn d1oxnb_ B:86-97,104-112,112-116 2opz d2opza1 A:264-273,280-288,288-292 1q4q d1q4qj_ J:225-234,243-251,251-255 1xb1 d1xb1b_ B:264-273,280-288,288-292 1oxn d1oxnd_ D:86-97,104-112,112-116 2rax d2raxx1 X:14-23,34-42,42-46 1tw6 d1tw6a_ A:86-95,104-112,112-116 1xb1 d1xb1d_ D:264-273,280-288,288-292 1q4q d1q4qa_ A:225-234,243-251,251-255 1q4q d1q4qh_ H:225-236,243-251,251-255 1xb1 d1xb1a_ A:264-273,280-288,288-292 2opy d2opya1 A:264-273,280-288,288-292 1q4q d1q4qf_ F:225-234,243-251,251-255 1q4q d1q4qi_ I:225-234,243-251,251-255 1nw9 d1nw9a_ A:264-273,280-288,288-292 1xb0 d1xb0f_ F:264-273,280-288,288-292 1xb0 d1xb0b_ B:264-273,280-288,288-292 1xb0 d1xb0c_ C:264-273,280-288,288-292 1q4q d1q4qg_ G:225-234,243-251,251-255 2i3h d2i3ha1 A:86-95,104-112,112-116 2opz d2opzb1 B:264-273,280-288,288-292 1xb0 d1xb0d_ D:264-273,280-288,288-292 1oy7 d1oy7e_ E:86-95,104-112,112-116 1xb0 d1xb0a_ A:264-273,280-288,288-292 1xb0 d1xb0e_ E:264-273,280-288,288-292 2i3i d2i3ia1 A:86-95,104-112,112-116 1g73 d1g73c_ C:264-273,280-288,288-292 1sdz d1sdza_ A:43-52,60-68,68-72 1se0 d1se0a_ A:43-52,60-68,68-72 1g73 d1g73d_ D:264-273,280-288,288-292 1oxq d1oxqe_ E:86-95,104-112,112-116 1xb1 d1xb1f_ F:264-273,280-288,288-292 1oxn d1oxne_ E:86-95,104-112,112-116 2rax d2raxe1 E:14-23,34-42,42-49 1i3o d1i3of_ F:162-169,180-188,188-192 1tft d1tfta1 A:259-273,280-288,288-292 2qfa d2qfaa1 A:14-23,34-42,42-49 1tfq d1tfqa_ A:259-273,280-288,288-292 1f3h d1f3ha_ A:14-23,34-42,42-48 2rax d2raxa1 A:14-23,34-42,42-48 1xox d1xoxa1 A:14-23,34-42,42-47 1xox d1xoxb1 B:14-23,34-42,42-47 1e31 d1e31a_ A:14-23,34-42,42-48 2raw d2rawa1 A:14-23,34-42,42-48 1g3f d1g3fa_ A:263-273,280-288,288-292 1e31 d1e31b_ B:14-23,34-42,42-48 1f3h d1f3hb_ B:14-23,34-42,42-48 92. d.298.1 RelE-like Toxin component of plasmid stabilisation system ! RelE-like beta-alpha(2)-beta(4), 2 layers; a/b, antiparallel beta-sheet; order 15432 1wmi d1wmic1 C:9-19,19-37,74-85 1wmi d1wmia1 A:9-19,19-37,74-85 2a6r d2a6re1 E:7-21,20-38,73-82 2a6s d2a6sa1 A:6-21,20-38,73-81 2a6r d2a6rb1 B:7-21,20-38,73-81 2a6r d2a6rc1 C:7-21,20-38,73-82 2a6q d2a6qf1 F:6-21,20-38,73-81 2a6r d2a6rf1 F:7-21,20-38,73-82 2a6q d2a6qe1 E:6-21,20-38,73-81 2a6s d2a6sb1 B:6-21,20-38,73-82 2a6s d2a6sd1 D:6-21,20-38,73-82 2a6s d2a6sc1 C:6-21,20-38,73-82 2a6r d2a6rd1 D:7-21,20-38,73-82 2a6r d2a6ra1 A:7-21,20-38,73-82 1z8m d1z8ma1 A:7-21,23-37,74-83 95. e.50.1 AF1104-like AF1104-like 2 domains; d1: [all-alpha; 3-helical bundle, similar to the immunoglobulin/albumin-binding domain-like fold (scop_cf 46996)]; d2: [alpha/beta; 3 layers, a/b/a; 6-stranded mixed beta-sheet, order: 321456, strand 6 is antiparallel to the rest] 2ffj d2ffja1 A:98-110,143-153,239-245 2ffj d2ffja1 A:98-110,143-153,259-267 2g8l d2g8lb1 B:96-110,137-148,235-241 2ffj d2ffjb1 B:98-113,143-153,239-245 2g8l d2g8la1 A:96-110,137-148,235-241 2g8l d2g8lb1 B:96-110,137-148,255-263 2ffj d2ffjb1 B:98-113,143-153,259-267 2g8l d2g8la1 A:96-110,137-148,255-263 96. d.58.32 FAD-linked oxidases, C-terminal domain duplication: contains two subdomains of this fold ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 1dii d1diib1 B:254-266,402-421,425-431 1dii d1diia1 A:254-266,402-421,425-431 1e8g d1e8gb1 B:285-297,432-451,455-461 1f0x d1f0xa1 A:312-319,378-389,389-398 1f0x d1f0xb1 B:1312-1319,1378-1389,1389-1398 1w1s d1w1sa1 A:296-305,308-323,325-336 1w1q d1w1qa1 A:296-305,308-323,325-336 1w1r d1w1ra1 A:296-305,308-323,325-336 1w1o d1w1oa1 A:296-305,308-323,325-336 1w1l d1w1lb1 B:285-297,432-451,455-462 1i19 d1i19b1 B:299-308,440-466,472-481 2i0k d2i0ka1 A:299-308,440-466,472-481 1i19 d1i19a1 A:299-308,440-466,472-481 1e8g d1e8ga1 A:285-297,432-451,455-462 1w1s d1w1sa1 A:258-271,404-420,425-435 1w1o d1w1oa1 A:258-271,404-420,425-435 1w1q d1w1qa1 A:258-271,404-420,425-435 1w1r d1w1ra1 A:258-271,404-420,425-435 1ahu d1ahua1 A:285-303,432-451,455-461 1ahu d1ahub1 B:285-303,432-451,455-461 1e8f d1e8fa1 A:285-303,432-451,455-461 1qlu d1qlua1 A:285-303,432-451,455-461 1wve d1wvea1 A:254-272,402-421,425-431 1qlu d1qlub1 B:285-303,432-451,455-461 1wve d1wveb1 B:254-272,402-421,425-431 1wvf d1wvfa1 A:254-272,402-421,425-431 2vao d2vaoa1 A:285-303,432-451,455-461 2vao d2vaob1 B:285-303,432-451,455-461 1diq d1diqb1 B:254-272,402-421,425-431 1diq d1diqa1 A:254-272,402-421,425-431 1vao d1vaob1 B:285-303,432-451,455-462 1vao d1vaoa1 A:285-303,432-451,455-462 1e8f d1e8fb1 B:285-303,432-451,455-462 1w1l d1w1la1 A:285-303,432-451,455-462 1w1j d1w1ja1 A:285-303,432-451,455-462 1qlt d1qlta1 A:285-303,432-451,455-462 1qlt d1qltb1 B:285-303,432-451,455-462 1e8h d1e8ha1 A:285-303,432-451,455-462 1w1k d1w1ka1 A:285-303,432-451,455-462 1w1m d1w1ma1 A:285-303,432-451,455-462 1w1j d1w1jb1 B:285-303,432-451,455-462 1dzn d1dzna1 A:285-303,432-451,455-462 1ahz d1ahzb1 B:285-303,432-451,455-461 1ahz d1ahza1 A:285-303,432-451,455-461 1e8h d1e8hb1 B:285-303,432-451,455-462 1dzn d1dznb1 B:285-303,432-451,455-462 1ahv d1ahvb1 B:285-303,432-451,455-461 1ahv d1ahva1 A:285-303,432-451,455-461 1w1k d1w1kb1 B:285-303,432-451,455-462 1w1m d1w1mb1 B:285-303,432-451,455-462 1e0y d1e0yb1 B:285-303,432-451,455-462 1e0y d1e0ya1 A:285-303,432-451,455-462 100. d.313.1 Prenyltransferase-like the barrel channel harbours the substrate-binding site ! Antiparallel beta/alpha barrel (PT-barrel) tandem repeat of five alpha(2)-beta(2) motifs; antiparallel beta-sheet barrel, closed; n=10, S=10; order 123456789A; there is a channel along the barrel axis 1zdy d1zdya1 A:73-82,89-103,104-113 1zcw d1zcwa1 A:73-82,89-103,104-113 1zdw d1zdwa1 A:73-82,89-103,104-113 1zb6 d1zb6a1 A:73-82,89-103,104-113 1zb6 d1zb6a1 A:73-82,89-103,159-168 1zdw d1zdwa1 A:73-82,89-103,159-168 1zcw d1zcwa1 A:73-82,89-103,159-168 1zdy d1zdya1 A:73-82,89-103,159-168 1zdy d1zdya1 A:185-197,202-212,212-220 1zcw d1zcwa1 A:185-197,202-212,213-220 1zdw d1zdwa1 A:185-197,202-212,213-220 1zb6 d1zb6a1 A:185-197,202-212,213-220 1zcw d1zcwa1 A:3-22,26-38,104-113 1zdw d1zdwa1 A:3-22,26-38,104-113 1zb6 d1zb6a1 A:3-22,26-38,104-113 1zdy d1zdya1 A:3-22,26-38,104-113 102. d.328.1 CorA soluble domain-like CorA soluble domain-like beta(2)-alpha-beta-alpha(2)-beta(4)-alpha(3); 3 layers: a/b/a; mixed beta-sheet, order 2137654; strands 3 and 7 are parallel 2bbj d2bbjf1 F:69-81,83-93,122-133 2bbj d2bbjd1 D:69-81,83-93,122-133 2bbj d2bbja1 A:69-81,83-93,122-133 2bbh d2bbha1 A:69-81,83-93,122-133 2bbj d2bbjb1 B:69-81,83-93,121-133 2bbj d2bbje1 E:69-81,83-93,121-133 2iub d2iubf1 F:69-81,83-93,119-133 2iub d2iube1 E:69-81,83-93,119-133 2iub d2iubc1 C:69-81,83-93,119-133 2iub d2iubg1 G:69-81,83-93,119-133 2iub d2iubj1 J:69-81,83-93,119-133 2iub d2iubi1 I:69-81,83-93,119-133 2hn2 d2hn2b1 B:2069-2081,2083-2093,2119-2133 2iub d2iubb1 B:69-81,83-93,119-133 2hn2 d2hn2d1 D:4069-4081,4083-4093,4119-4133 2hn2 d2hn2a1 A:1069-1081,1083-1093,1119-1133 2hn2 d2hn2e1 E:5069-5081,5083-5093,5119-5133 2iub d2iuba1 A:69-81,83-93,119-133 2iub d2iubd1 D:69-81,83-93,119-133 2iub d2iubh1 H:69-81,83-93,119-133 2hn2 d2hn2c1 C:3069-3081,3083-3093,3119-3133 103. d.73.1 RuBisCO, small subunit RuBisCO, small subunit alpha-beta(2)-alpha-beta(2); 2 layers, alpha/beta 1gk8 d1gk8o_ O:22-37,85-101,103-112 1gk8 d1gk8i_ I:22-37,85-101,103-112 1uzh d1uzhf1 F:22-37,67-83,85-94 2v6a d2v6aj1 J:22-37,85-101,103-112 1uzh d1uzhp1 P:22-37,67-83,85-94 1uzh d1uzhm1 M:22-37,67-83,85-94 2v6a d2v6al1 L:22-37,85-101,103-112 1uzh d1uzhi1 I:22-37,67-83,85-94 2v6a d2v6ai1 I:22-37,85-101,103-112 1gk8 d1gk8m_ M:22-37,85-101,103-112 2v6a d2v6am1 M:22-37,85-101,103-112 2v67 d2v67k1 K:22-37,85-101,103-112 2v6a d2v6ao1 O:22-37,85-101,103-112 1uzh d1uzhj1 J:22-37,67-83,85-94 2v6a d2v6ap1 P:22-37,85-101,103-112 2v6a d2v6ak1 K:22-37,85-101,103-112 2v69 d2v69k1 K:22-37,85-101,103-112 2v67 d2v67o1 O:22-37,85-101,103-112 2v6a d2v6an1 N:22-37,85-101,103-112 2v67 d2v67n1 N:22-37,85-101,103-112 2v63 d2v63k1 K:22-37,85-101,103-112 1gk8 d1gk8k_ K:22-37,85-101,103-112 1ir2 d1ir22_ 2:22-37,85-101,103-112 2v63 d2v63n1 N:22-37,85-101,103-112 1ir2 d1ir2i_ I:22-37,85-101,103-112 1uw9 d1uw9p1 P:22-37,85-101,103-112 1uw9 d1uw9c1 C:22-37,85-101,103-112 2v63 d2v63o1 O:22-37,85-101,103-112 2v69 d2v69o1 O:22-37,85-101,103-112 1uw9 d1uw9j1 J:22-37,85-101,103-112 1ir2 d1ir2n_ N:22-37,85-101,103-112 2v69 d2v69m1 M:22-37,85-101,103-112 2v63 d2v63p1 P:22-37,85-101,103-112 2v68 d2v68p1 P:22-37,85-101,103-112 2v63 d2v63i1 I:22-37,85-101,103-112 1ir2 d1ir2l_ L:22-37,85-101,103-112 1ir2 d1ir28_ 8:22-37,85-101,103-112 2v69 d2v69j1 J:22-37,85-101,103-112 2v63 d2v63j1 J:22-37,85-101,103-112 1ir2 d1ir2p_ P:22-37,85-101,103-112 1uw9 d1uw9t1 T:22-37,85-101,103-112 1uw9 d1uw9i1 I:22-37,85-101,103-112 2v67 d2v67m1 M:22-37,85-101,103-112 2v67 d2v67l1 L:22-37,85-101,103-112 2v69 d2v69i1 I:22-37,85-101,103-112 1uw9 d1uw9f1 F:22-37,85-101,103-112 1ir2 d1ir2o_ O:22-37,85-101,103-112 1ir2 d1ir27_ 7:22-37,85-101,103-112 2v69 d2v69n1 N:22-37,85-101,103-112 1uw9 d1uw9m1 M:22-37,85-101,103-112 1uw9 d1uw9w1 W:22-37,85-101,103-112 2v68 d2v68n1 N:22-37,85-101,103-112 2v68 d2v68l1 L:22-37,85-101,103-112 2v63 d2v63l1 L:22-37,85-101,103-112 1ir2 d1ir23_ 3:22-37,85-101,103-112 2v69 d2v69l1 L:22-37,85-101,103-112 2v68 d2v68m1 M:22-37,85-101,103-112 1ir2 d1ir2m_ M:22-37,85-101,103-112 1rld d1rldt_ T:522-537,579-595,597-606 1rld d1rlds_ S:522-537,579-595,597-606 1ir2 d1ir2j_ J:22-37,85-101,102-112 1uzh d1uzhw1 W:22-37,67-83,85-95 1uzh d1uzhc1 C:22-37,67-83,85-95 2v67 d2v67j1 J:22-37,85-101,103-113 1uzh d1uzht1 T:22-37,67-83,85-95 1uzd d1uzdp1 P:22-37,79-95,97-107 1uwa d1uwap1 P:22-37,85-101,103-113 1uzd d1uzdi1 I:22-37,79-95,97-107 1uzd d1uzdf1 F:22-37,79-95,97-107 1uzd d1uzdc1 C:22-37,79-95,97-107 2v67 d2v67i1 I:22-37,85-101,103-113 1uzd d1uzdj1 J:22-37,79-95,97-107 1uzd d1uzdm1 M:22-37,79-95,97-107 2v68 d2v68k1 K:22-37,85-101,103-113 1uzd d1uzdw1 W:22-37,79-95,97-107 2v67 d2v67p1 P:22-37,85-101,103-113 2v68 d2v68o1 O:22-37,85-101,103-113 1uwa d1uwaj1 J:22-37,85-101,103-113 1uwa d1uwai1 I:22-37,85-101,103-113 1ir2 d1ir26_ 6:22-37,85-101,103-113 1uwa d1uwac1 C:22-37,85-101,103-113 2v68 d2v68j1 J:22-37,85-101,103-113 1uwa d1uwaf1 F:22-37,85-101,103-113 1ir2 d1ir21_ 1:22-37,85-101,103-113 2v68 d2v68i1 I:22-37,85-101,103-113 1uzd d1uzdt1 T:22-37,79-95,97-107 1uwa d1uwat1 T:22-37,85-101,103-113 1uwa d1uwaw1 W:22-37,85-101,103-113 2v63 d2v63m1 M:22-37,85-101,103-113 1uwa d1uwam1 M:22-37,85-101,103-113 1ir2 d1ir2k_ K:22-37,85-101,103-113 1ir2 d1ir24_ 4:22-37,85-101,103-113 2v69 d2v69p1 P:22-37,85-101,103-113 1aus d1aust_ T:22-37,79-95,97-106 1aus d1ausu_ U:22-37,79-95,97-106 1aus d1ausv_ V:22-37,79-95,97-106 1aus d1auss_ S:22-37,79-95,97-106 1aa1 d1aa1i_ I:22-37,79-95,97-106 1aa1 d1aa1c_ C:22-37,79-95,97-106 1aa1 d1aa1f_ F:22-37,79-95,97-106 1aa1 d1aa1s_ S:22-37,79-95,97-106 1rxo d1rxos_ S:22-37,79-95,97-106 1rxo d1rxoi_ I:22-37,79-95,97-106 1rxo d1rxoc_ C:22-37,79-95,97-106 1rxo d1rxof_ F:22-37,79-95,97-106 1bxn d1bxnk_ K:15-30,60-76,77-87 1bxn d1bxnl_ L:15-30,60-76,77-87 1ir2 d1ir25_ 5:22-37,85-101,102-113 1rlc d1rlcs_ S:22-37,79-95,97-107 1rcx d1rcxs_ S:22-37,79-95,97-107 1rcx d1rcxw_ W:22-37,79-95,97-107 1rcx d1rcxf_ F:22-37,79-95,97-107 1rcx d1rcxp_ P:22-37,79-95,97-107 1rcx d1rcxt_ T:22-37,79-95,97-107 1rcx d1rcxm_ M:22-37,79-95,97-107 1rcx d1rcxi_ I:22-37,79-95,97-107 1rcx d1rcxc_ C:22-37,79-95,97-107 3rub d3rubs_ S:22-37,79-95,97-107 1rco d1rcop_ P:22-37,79-95,97-107 1rco d1rcot_ T:22-37,79-95,97-107 1rco d1rcos_ S:22-37,79-95,97-107 1rco d1rcoc_ C:22-37,79-95,97-107 1rco d1rcom_ M:22-37,79-95,97-107 1rco d1rcoi_ I:22-37,79-95,97-107 1rco d1rcow_ W:22-37,79-95,97-107 1rco d1rcof_ F:22-37,79-95,97-107 1bwv d1bwvy_ Y:22-37,79-95,97-107A 1bwv d1bwvu_ U:22-37,79-95,97-107A 1ir1 d1ir1t_ T:22-37,79-95,97-107 1bwv d1bwvs_ S:22-37,79-95,97-107A 1bwv d1bwvw_ W:22-37,79-95,97-107A 1ir1 d1ir1s_ S:22-37,79-95,97-107 1bxn d1bxnj_ J:15-30,60-76,77-88 1bxn d1bxni_ I:15-30,60-76,77-88 1iwa d1iwan_ N:22-37,79-95,97-107A 1ej7 d1ej7s_ S:522-537,579-595,597-607 1ir1 d1ir1v_ V:22-37,79-95,97-107 1wdd d1wdds_ S:22-37,78-94,96-106 8ruc d8rucj_ J:22-37,79-95,97-107 1svd d1svdm1 M:23-38,68-84,85-95 4rub d4rubt_ T:22-37,79-95,97-107 1rbo d1rbos_ S:22-37,79-95,97-107 1rbo d1rbof_ F:22-37,79-95,97-107 1wdd d1wddw_ W:22-37,78-94,96-106 1rbo d1rboc_ C:22-37,79-95,97-107 1rbo d1rboi_ I:22-37,79-95,97-107 1ir1 d1ir1u_ U:22-37,79-95,97-107 8ruc d8ruck_ K:22-37,79-95,97-107 1iwa d1iwap_ P:22-37,79-95,97-107A 4rub d4rubs_ S:22-37,79-95,97-107 1iwa d1iwaj_ J:22-37,79-95,97-107A 1rsc d1rsco_ O:22-37,79-95,96-107 1rsc d1rsci_ I:22-37,79-95,96-107 1rsc d1rsck_ K:22-37,79-95,96-107 1rsc d1rscm_ M:22-37,79-95,96-107 1rsc d1rscn_ N:22-37,79-95,96-107 1rsc d1rscl_ L:22-37,79-95,96-107 1rsc d1rscj_ J:22-37,79-95,96-107 1rsc d1rscp_ P:22-37,79-95,96-107 8ruc d8ruci_ I:22-37,79-95,97-107 1iwa d1iwaf_ F:22-37,79-95,97-107A 1iwa d1iwab_ B:22-37,79-95,97-107A 8ruc d8rucl_ L:22-37,79-95,97-107 4rub d4rubu_ U:22-37,79-95,97-107 4rub d4rubv_ V:22-37,79-95,97-107 1iwa d1iwal_ L:22-37,79-95,97-107A 1iwa d1iwah_ H:22-37,79-95,97-107A 1iwa d1iwad_ D:22-37,79-95,97-107A 1rbl d1rblp_ P:22-37,79-95,96-107 1rbl d1rbln_ N:22-37,79-95,96-107 1rbl d1rbll_ L:22-37,79-95,96-107 1rbl d1rblo_ O:22-37,79-95,96-107 1rbl d1rblm_ M:22-37,79-95,96-107 1rbl d1rblk_ K:22-37,79-95,96-107 1rbl d1rblj_ J:22-37,79-95,96-107 1rbl d1rbli_ I:22-37,79-95,96-107 106. c.152.1 CbiG N-terminal domain-like probable biological unit is a homodimer; putative active site is formed by residues from both subunits CbiG N-terminal domain-like 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 213456, strand 5 is antiparallel to the rest 3eeq d3eeqa2 A:138-147,152-166,168-173 3eeq d3eeqb2 B:138-147,152-166,168-173 3eeq d3eeqa2 A:138-147,152-166,192-197 3eeq d3eeqb2 B:138-147,152-166,192-197 3eeq d3eeqa2 A:138-147,152-166,206-214 3eeq d3eeqb2 B:138-147,152-166,206-214 108. d.29.1 Ribosomal protein L31e Ribosomal protein L31e beta-alpha-beta-(alpha)-beta(2); 2 layers: alpha/beta; mixed beta-sheet, order: 1342 1q81 d1q81y_ Y:24-42,51-60,68-79 1vq5 d1vq5x1 X:24-42,51-60,68-79 1vq7 d1vq7x1 X:24-42,51-62,68-79 1yjw d1yjwx1 X:24-42,51-62,68-79 1k9m d1k9my_ Y:24-42,51-62,68-79 1kqs d1kqsw_ W:24-42,51-62,68-79 1q7y d1q7yy_ Y:24-42,51-62,68-79 1m90 d1m90y_ Y:24-42,51-62,68-79 1yjn d1yjnx1 X:24-42,51-62,68-79 1q86 d1q86y_ Y:24-42,51-62,68-79 1jj2 d1jj2w_ W:24-42,51-62,68-79 1kd1 d1kd1y_ Y:24-42,51-62,68-79 1k73 d1k73y_ Y:24-42,51-62,68-79 1ffk d1ffku_ U:24-42,51-62,68-79 1nji d1njiy_ Y:24-42,51-62,68-79 1m1k d1m1ky_ Y:24-42,51-62,68-79 1k8a d1k8ay_ Y:24-42,51-62,68-79 1s72 d1s72x_ X:24-42,51-62,68-79 1qvf d1qvfw_ W:24-42,51-62,68-79 1yij d1yijx1 X:24-42,51-62,68-79 1yit d1yitx1 X:24-42,51-62,68-79 1q82 d1q82y_ Y:24-42,51-62,68-79 1kc8 d1kc8y_ Y:24-42,51-62,68-79 1qvg d1qvgw_ W:24-42,51-62,68-79 1yi2 d1yi2x1 X:24-42,51-62,68-79 1vq6 d1vq6x1 X:24-42,51-62,68-79 1yhq d1yhqx1 X:24-42,51-62,68-79 1vqm d1vqmx1 X:24-42,51-62,68-79 1vqk d1vqkx1 X:24-42,51-62,68-79 1n8r d1n8ry_ Y:24-42,51-62,68-79 1vqn d1vqnx1 X:24-42,51-62,68-79 1vq9 d1vq9x1 X:24-42,51-62,68-79 1vql d1vqlx1 X:24-42,51-62,68-79 2otj d2otjx1 X:24-42,51-62,68-79 1vqp d1vqpx1 X:24-42,51-62,68-79 1vqo d1vqox1 X:24-42,51-62,68-79 1vq4 d1vq4x1 X:24-42,51-62,68-79 2otl d2otlx1 X:24-42,51-62,68-79 1yj9 d1yj9x1 X:24-42,51-62,68-79 1vq8 d1vq8x1 X:24-42,51-62,68-79 110. c.90.1 Tetrapyrrole methylase Tetrapyrrole methylase consists of two non-similar domains ! Domain 1 has parallel sheet of 5 strands, order 32415 ! Domain 2 has mixed sheet of 5 strands, order 12534; strands 4 & 5 are antiparallel to the rest 1vhv d1vhvb_ B:168-181,205-213,218-226 1vhv d1vhva_ A:168-181,205-213,218-226 1wng d1wnga1 A:177-193,220-227,233-241 1vce d1vcea1 A:177-193,220-227,233-241 2dek d2deka1 A:177-193,220-227,233-241 2dek d2dekb1 B:177-193,220-227,233-241 1wng d1wngb1 B:177-193,220-227,233-241 1vce d1vceb1 B:177-193,220-227,233-241 1s4d d1s4dd_ D:188-200,224-236,240-246 1s4d d1s4dh_ H:188-200,224-236,240-246 1s4d d1s4da_ A:188-200,224-236,240-246 1s4d d1s4dj_ J:188-200,224-236,240-246 1s4d d1s4db_ B:188-200,224-236,240-246 1cbf d1cbfa_ A:188-200,224-236,240-246 1s4d d1s4df_ F:188-200,224-236,240-246 2cbf d2cbfa_ A:188-200,224-236,240-246 1pjs d1pjsa2 A:383-398,425-434,436-442 1s4d d1s4dg_ G:188-200,225-236,240-246 1s4d d1s4de_ E:188-200,225-236,240-246 1s4d d1s4dm_ M:188-200,225-236,240-246 1s4d d1s4dk_ K:188-200,225-236,240-246 1s4d d1s4di_ I:188-200,225-236,240-246 1v9a d1v9ab1 B:164-176,200-207,214-220 1va0 d1va0b1 B:164-176,200-207,214-220 1va0 d1va0a1 A:164-176,200-207,214-220 1v9a d1v9aa1 A:164-176,200-207,214-220 1pjs d1pjsb2 B:386-398,425-434,436-442 1s4d d1s4dl_ L:188-200,227-236,240-246 112. d.67.2 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain RRF/tRNA synthetase additional domain-like core: alpha-beta(2)-alpha-beta(2); 2 layers: alpha/beta 1f7v d1f7va3 A:30-48,50-59,67-72 1f7u d1f7ua3 A:30-48,50-59,68-73 1bs2 d1bs2a3 A:30-48,50-59,68-72 114. d.143.1 SAICAR synthase-like shares functional and structural similarities with the ATP-grasp fold and protein kinase superfamilies ! SAICAR synthase-like consists of two alpha+beta subdomains 1w2f d1w2fb_ B:351-364,366-387,398-406 1w2f d1w2fa_ A:351-364,366-387,398-406 1w2d d1w2da_ A:351-364,366-387,398-406 1w2c d1w2ca_ A:351-364,366-387,398-406 1w2d d1w2db_ B:351-364,366-387,398-406 1w2c d1w2cb_ B:351-364,366-387,398-406 1tzd d1tzda_ A:349-362,364-385,396-404 1tzd d1tzdb_ B:349-362,364-386,396-404 1bo1 d1bo1b_ B:40-61,113-125,138-143 1bo1 d1bo1a_ A:40-61,113-125,138-143 1bo1 d1bo1a_ A:40-61,113-125,193-203 1bo1 d1bo1b_ B:40-61,113-125,193-203 117. a.160.1 PAP/OAS1 substrate-binding domain this domain follows the catalytic nucleotidyltransferase domain ! PAP/OAS1 substrate-binding domain core: 5-helical bundle; up-and-down; right-handed twist 2dr8 d2dr8a1 A:171-183,184-195,198-204 2zh6 d2zh6a1 A:171-183,184-195,198-204 2dvi d2dvia1 A:171-183,184-195,198-204 2zhb d2zhba1 A:171-183,184-195,198-204 2zh2 d2zh2a1 A:171-183,184-195,198-204 1r8b d1r8ba1 A:171-183,184-195,198-204 1tfy d1tfyd1 D:171-183,184-195,198-204 2zh4 d2zh4a1 A:171-183,184-195,198-204 1tfw d1tfwb1 B:171-183,184-195,198-204 2zh5 d2zh5a1 A:171-183,184-195,198-204 1r89 d1r89a1 A:171-183,184-195,198-204 2dr9 d2dr9a1 A:171-183,184-195,198-204 1ueu d1ueua1 A:171-183,184-195,198-204 2zh1 d2zh1a1 A:171-183,184-195,198-204 2dr7 d2dr7a1 A:171-183,184-195,198-204 1sz1 d1sz1b1 B:171-183,184-195,198-204 1sz1 d1sz1a1 A:171-183,184-195,198-204 1r8a d1r8aa1 A:171-183,184-195,198-204 2zh8 d2zh8a1 A:171-183,184-195,198-204 1tfy d1tfyb1 B:171-183,184-195,198-204 1uet d1ueta1 A:171-183,184-195,198-204 1tfw d1tfwc1 C:171-183,184-195,198-204 2dr5 d2dr5a1 A:171-183,184-195,198-204 1uev d1ueva1 A:171-183,184-195,198-204 1tfw d1tfwa1 A:171-183,184-195,198-203 1tfw d1tfwd1 D:171-183,184-195,198-203 1px5 d1px5a1 A:228-245,250-265,295-300 122. d.275.1 Hut operon positive regulatory protein HutP Hut operon positive regulatory protein HutP alpha(2)-beta-alpha(2)-beta(3); 3 layers: a/b/a; antiparallel beta-sheet: order 1234 1wpt d1wpta1 A:46-62,68-88,99-110 1vea d1veaa_ A:46-62,68-88,99-110 1wps d1wpsa1 A:46-62,68-88,99-110 1wro d1wroa1 A:46-62,68-88,98-110 1wro d1wrob1 B:46-62,68-88,98-110 1wrn d1wrna1 A:46-62,68-88,98-110 1wpv d1wpvb1 B:46-62,68-88,98-110 1wpv d1wpva1 A:46-62,68-88,98-110 1wrn d1wrnc1 C:46-62,68-88,98-110 1wpt d1wptb1 B:46-62,68-88,99-110 1wpv d1wpvc1 C:46-62,68-88,98-110 3boy d3boyb1 B:46-62,68-88,98-110 1wmq d1wmqa1 A:46-62,68-88,98-110 3boy d3boyc1 C:46-62,68-88,98-110 1wpu d1wpua1 A:46-62,68-88,98-110 1wpu d1wpub1 B:46-62,68-88,98-110 1wrq d1wrqa1 A:46-62,68-88,98-110 1wrn d1wrnb1 B:46-62,68-88,98-110 3boy d3boya1 A:46-62,68-88,98-110 1wmq d1wmqb1 B:46-62,68-88,98-110 1wrq d1wrqb1 B:46-62,68-88,98-110 1wro d1wroc1 C:46-62,68-88,98-110 1vea d1veab_ B:46-62,68-88,99-110 1wps d1wpsb1 B:46-62,68-88,99-110 126. e.6.1 Acyl-CoA dehydrogenase NM domain-like flavoprotein: binds FAD; constituent families differ in the numbers of C-terminal domains (four-helical bundles) ! Acyl-CoA dehydrogenase NM domain-like 2 domains: (1) all-alpha: 5 helices; (2) contains an open beta-sheet barrel: n*=5, S*=8; complex topology 1w07 d1w07a3 A:97-114,115-129,132-137 1w07 d1w07b3 B:97-114,115-129,132-137 1is2 d1is2a3 A:98-115,116-130,133-138 1is2 d1is2b3 B:98-115,116-130,133-138 2ddh d2ddha3 A:98-112,116-130,133-138 3mdd d3mddb2 B:91-112,113-128,130-135 1egd d1egdd2 D:91-112,113-128,130-135 3mde d3mdea2 A:91-112,113-128,130-135 2a1t d2a1ta2 A:91-112,113-128,130-135 1u8v d1u8va2 A:100-124,126-142,144-150 3mdd d3mdda2 A:91-112,113-128,130-135 1udy d1udyd2 D:91-112,113-128,130-135 3mde d3mdeb2 B:91-112,113-128,130-135 1u8v d1u8vd2 D:100-124,126-142,144-150 1egc d1egcb2 B:91-112,113-128,130-135 2a1t d2a1tb2 B:91-112,113-128,130-135 1egc d1egcd2 D:91-112,113-128,130-135 1u8v d1u8vc2 C:100-124,126-142,144-150 1u8v d1u8vb2 B:100-124,126-142,144-150 1udy d1udyc2 C:91-112,113-128,130-135 1egd d1egdc2 C:91-112,113-128,130-135 2a1t d2a1tc2 C:91-112,113-128,130-135 1ege d1egeb2 B:91-112,113-128,130-135 1u8v d1u8vc2 C:100-124,126-142,271-276 1u8v d1u8vd2 D:100-124,126-142,271-276 1jqi d1jqib2 B:485-507,508-522,525-530 1egc d1egcc2 C:91-112,113-128,130-135 1ege d1egec2 C:91-112,113-128,130-135 1t9g d1t9ga2 A:91-112,113-128,130-135 1udy d1udya2 A:91-112,113-128,130-135 1u8v d1u8va2 A:100-124,126-142,271-276 1egd d1egda2 A:91-112,113-128,130-135 1t9g d1t9gd2 D:91-112,113-128,130-135 1u8v d1u8vb2 B:100-124,126-142,271-276 1t9g d1t9gb2 B:91-112,113-128,130-135 1egd d1egdb2 B:91-112,113-128,130-135 1u8v d1u8va2 A:100-124,126-142,196-203 1t9g d1t9gc2 C:91-112,113-128,130-135 1ege d1egea2 A:91-112,113-128,130-135 2cx9 d2cx9c2 C:82-104,105-119,122-127 1u8v d1u8vb2 B:100-124,126-142,196-203 1udy d1udyb2 B:91-112,113-128,130-135 2a1t d2a1td2 D:91-112,113-128,130-135 1r2j d1r2ja2 A:68-89,90-104,106-111 2d29 d2d29b2 B:82-104,105-119,122-127 1egc d1egca2 A:91-112,113-128,130-135 1u8v d1u8vc2 C:100-124,126-142,196-203 2cx9 d2cx9a2 A:82-104,105-119,122-127 1u8v d1u8vd2 D:100-124,126-142,196-203 2d29 d2d29a2 A:82-104,105-119,122-127 2cx9 d2cx9d2 D:82-104,105-119,122-127 1ege d1eged2 D:91-112,113-128,130-135 2cx9 d2cx9b2 B:82-104,105-119,122-127 1ws9 d1ws9b2 B:82-104,105-119,122-127 1ws9 d1ws9a2 A:82-104,105-119,122-127 1rx0 d1rx0a2 A:94-115,116-130,133-138 1siq d1siqa2 A:90-112,113-127,130-135 1rx0 d1rx0b2 B:94-115,116-130,133-138 1rx0 d1rx0c2 C:94-115,116-130,133-138 2c0u d2c0ub2 B:87-107,109-123,128-133 2r0n d2r0na2 A:90-112,113-127,130-135 1ivh d1ivhc2 C:90-112,113-127,130-135 1sir d1sira2 A:90-112,113-127,130-135 1rx0 d1rx0d2 D:94-115,116-130,133-138 2c0u d2c0ud2 D:87-107,109-123,128-133 1ivh d1ivhd2 D:90-112,113-127,130-135 1ivh d1ivha2 A:90-112,113-127,130-135 1ivh d1ivhb2 B:90-112,113-127,130-135 2r0m d2r0ma2 A:90-112,113-127,130-135 1buc d1bucb2 B:83-105,106-120,123-128 2reh d2rehc2 C:87-108,109-118,128-133 2zaf d2zafc2 C:87-108,109-118,128-133 2c12 d2c12b2 B:87-107,109-118,128-133 2zaf d2zafb2 B:87-108,109-118,128-133 2reh d2rehb2 B:87-107,109-118,128-133 2zaf d2zafa2 A:87-108,109-118,128-133 2c12 d2c12e2 E:87-107,109-118,128-133 2c12 d2c12d2 D:87-107,109-118,128-133 1buc d1buca2 A:83-105,112-120,123-128 2reh d2reha2 A:87-107,109-118,128-133 2c12 d2c12c2 C:87-107,109-118,128-133 2c0u d2c0uc2 C:87-107,109-118,128-133 2c0u d2c0ua2 A:87-107,109-118,128-133 2c12 d2c12f2 F:87-107,109-118,128-133 2c12 d2c12a2 A:87-107,109-118,128-133 2reh d2rehd2 D:87-107,109-118,128-133 2zaf d2zafd2 D:87-107,109-118,128-133 1ege d1egea2 A:91-112,113-128,173-182 1egd d1egdd2 D:91-112,113-128,173-182 1jqi d1jqia2 A:85-107,108-122,126-130 1t9g d1t9gb2 B:91-112,113-128,173-182 1ukw d1ukwa2 A:111-132,133-148,151-155 1ege d1egeb2 B:91-112,113-128,173-182 1ukw d1ukwb2 B:111-132,133-148,151-155 2zaf d2zafa2 A:87-108,109-118,182-191 1rx0 d1rx0a2 A:94-115,116-130,177-185 2zaf d2zafb2 B:87-108,109-118,182-191 1rx0 d1rx0c2 C:94-115,116-130,177-185 1rx0 d1rx0b2 B:94-115,116-130,177-185 1ws9 d1ws9a2 A:82-104,105-119,166-174 2zaf d2zafc2 C:87-108,109-118,182-191 2cx9 d2cx9d2 D:82-104,105-119,166-174 2reh d2rehc2 C:87-108,109-118,182-191 2d29 d2d29a2 A:82-104,105-119,166-174 2cx9 d2cx9c2 C:82-104,105-119,166-174 1ws9 d1ws9b2 B:82-104,105-119,166-174 1rx0 d1rx0d2 D:94-115,116-130,177-185 2d29 d2d29b2 B:82-104,105-119,166-174 1udy d1udya2 A:91-112,113-128,174-182 1egc d1egcc2 C:91-112,113-128,174-182 1buc d1bucb2 B:83-105,106-120,168-176 1jqi d1jqia2 A:85-107,108-122,169-177 1udy d1udyc2 C:91-112,113-128,174-182 1udy d1udyd2 D:91-112,113-128,174-182 1t9g d1t9ga2 A:91-112,113-128,174-182 2a1t d2a1ta2 A:91-112,113-128,174-182 3mde d3mdea2 A:91-112,113-128,174-182 1ivh d1ivha2 A:90-112,113-127,174-182 1t9g d1t9gd2 D:91-112,113-128,174-182 1egc d1egcb2 B:91-112,113-128,174-182 1ivh d1ivhd2 D:90-112,113-127,174-182 3mdd d3mddb2 B:91-112,113-128,174-182 1w07 d1w07b3 B:97-114,115-129,184-195 1ivh d1ivhc2 C:90-112,113-127,174-182 1ivh d1ivhb2 B:90-112,113-127,174-182 1w07 d1w07a3 A:97-114,115-129,184-195 1egd d1egdc2 C:91-112,113-128,174-182 1egd d1egda2 A:91-112,113-128,174-182 2a1t d2a1td2 D:91-112,113-128,174-182 3mde d3mdeb2 B:91-112,113-128,174-182 1ege d1eged2 D:91-112,113-128,174-182 1egd d1egdb2 B:91-112,113-128,174-182 1ege d1egec2 C:91-112,113-128,174-182 3mdd d3mdda2 A:91-112,113-128,174-182 1udy d1udyb2 B:91-112,113-128,174-182 1is2 d1is2a3 A:98-115,116-130,185-196 1jqi d1jqib2 B:485-507,508-522,569-577 1egc d1egca2 A:91-112,113-128,174-182 2a1t d2a1tc2 C:91-112,113-128,174-182 1is2 d1is2b3 B:98-115,116-130,185-196 2a1t d2a1tb2 B:91-112,113-128,174-182 1t9g d1t9gc2 C:91-112,113-128,174-182 2c12 d2c12b2 B:87-107,109-118,182-191 2c0u d2c0ua2 A:87-107,109-118,182-191 1egc d1egcd2 D:91-112,113-128,174-182 1ukw d1ukwa2 A:111-132,133-148,194-202 2reh d2rehb2 B:87-107,109-118,182-191 2c0u d2c0uc2 C:87-107,109-118,182-191 2c12 d2c12f2 F:87-107,109-118,182-191 2c12 d2c12e2 E:87-107,109-118,182-191 2c12 d2c12a2 A:87-107,109-118,182-191 1r2j d1r2ja2 A:68-89,90-104,150-159 2c12 d2c12c2 C:87-107,109-118,182-191 2c12 d2c12d2 D:87-107,109-118,182-191 2zaf d2zafd2 D:87-107,109-118,182-191 1ukw d1ukwb2 B:111-132,133-148,194-202 2reh d2rehd2 D:87-107,109-118,182-191 2reh d2reha2 A:87-107,109-118,182-191 2ddh d2ddha3 A:98-112,116-130,185-196 1buc d1buca2 A:83-105,112-120,168-176 2cx9 d2cx9b2 B:82-104,105-119,166-175 2c0u d2c0ud2 D:87-107,109-123,182-191 2c0u d2c0ub2 B:87-107,109-123,182-191 2cx9 d2cx9a2 A:82-104,105-119,166-177 2r0n d2r0na2 A:90-112,113-127,176-185 1siq d1siqa2 A:90-112,113-127,176-185 2r0m d2r0ma2 A:90-112,113-127,176-185 1sir d1sira2 A:90-112,113-127,176-185 130. a.209.1 ADP-ribosylglycohydrolase ADP-ribosylglycohydrolase multihelical; bundle 1t5j d1t5ja_ A:79-94,99-112,115-119 132. e.55.1 Rap/Ran-GAP Rap/Ran-GAP consists of two domains; d1: alpha+beta (78-190; alpha-beta(4)-alpha-beta-alpha; 3 layers; antiparallel beta-sheet of 5 strands; order 51234); d2: alpha/beta similar to the G-domain fold (191-381; scop_fa 52592) 1srq d1srqa_ A:206-213,281-292,292-299 1srq d1srqc_ C:206-213,281-292,292-299 1srq d1srqb_ B:206-213,281-292,292-299 134. d.56.1 GroEL-intermediate domain like GroEL-intermediate domain like 3-helical bundle packed against 3-stranded mixed beta-sheet 1wf4 d1wf4l3 L:140-153,384-409,409-413 1pcq d1pcqh3 H:140-153,385-410,410-414 1pcq d1pcqj3 J:140-153,385-410,410-414 1pcq d1pcqk3 K:140-153,385-410,410-414 1pcq d1pcqn3 N:140-153,385-410,410-414 1pf9 d1pf9h3 H:140-153,385-410,410-414 1we3 d1we3n3 N:140-153,384-409,409-413 1pf9 d1pf9k3 K:140-153,385-410,410-414 1pcq d1pcql3 L:140-153,385-410,410-414 1we3 d1we3l3 L:140-153,384-409,409-413 1wf4 d1wf4n3 N:140-153,384-409,409-413 1we3 d1we3j3 J:140-153,384-409,409-413 1wf4 d1wf4i3 I:140-153,384-409,409-413 1pf9 d1pf9j3 J:140-153,385-410,410-414 1pf9 d1pf9n3 N:140-153,385-410,410-414 1a6d d1a6da3 A:147-162,377-402,402-407 1pf9 d1pf9l3 L:140-153,385-410,410-414 1aon d1aonh3 H:140-153,385-410,410-414 1we3 d1we3h3 H:140-153,384-409,409-413 1wf4 d1wf4h3 H:140-153,384-409,409-413 1aon d1aonj3 J:140-153,385-410,410-414 1pcq d1pcqi3 I:140-153,385-410,410-414 1we3 d1we3i3 I:140-153,384-409,409-413 1we3 d1we3k3 K:140-153,384-409,409-413 1wf4 d1wf4k3 K:140-153,384-409,409-413 1q2v d1q2vd3 D:150-165,380-405,405-410 1pf9 d1pf9b3 B:140-153,385-410,410-414 1wf4 d1wf4j3 J:140-153,384-409,409-413 1pf9 d1pf9a3 A:140-153,385-410,410-414 1pf9 d1pf9d3 D:140-153,385-410,410-414 1pf9 d1pf9g3 G:140-153,385-410,410-414 1aon d1aonk3 K:140-153,385-410,410-414 1pf9 d1pf9i3 I:140-153,385-410,410-414 1pcq d1pcqm3 M:140-153,385-410,410-414 1q3r d1q3rc3 C:150-163,380-405,405-410 1pf9 d1pf9c3 C:140-153,385-410,410-414 1pf9 d1pf9f3 F:140-153,385-410,410-414 1pcq d1pcqa3 A:140-153,385-410,410-414 1pcq d1pcqg3 G:140-153,385-410,410-414 1pf9 d1pf9e3 E:140-153,385-410,410-414 1pcq d1pcqf3 F:140-153,385-410,410-414 1q2v d1q2vb3 B:150-165,380-405,405-410 1q2v d1q2vc3 C:150-165,380-405,405-410 1wf4 d1wf4m3 M:140-153,384-409,409-413 1pcq d1pcqd3 D:140-153,385-410,410-414 1pcq d1pcqc3 C:140-153,385-410,410-414 1we3 d1we3m3 M:140-153,384-409,409-413 1pcq d1pcqe3 E:140-153,385-410,410-414 1pcq d1pcqb3 B:140-153,385-410,410-414 1pf9 d1pf9m3 M:140-153,385-410,410-414 1q3r d1q3rb3 B:150-165,380-405,405-410 1q3s d1q3se3 E:150-166,380-405,405-410 1q3q d1q3qb3 B:150-165,380-405,405-410 1aon d1aonn3 N:140-153,385-410,410-414 1wf4 d1wf4c3 C:140-153,384-409,409-413 1a6e d1a6ea3 A:147-160,377-402,402-407 1q3r d1q3ra3 A:150-165,380-405,405-410 1q3s d1q3sb3 B:150-166,380-405,405-410 1we3 d1we3a3 A:140-153,384-409,409-413 1we3 d1we3d3 D:140-153,384-409,409-413 1wf4 d1wf4b3 B:140-153,384-409,409-413 1we3 d1we3c3 C:140-153,384-409,409-413 1sjp d1sjpa3 A:138-151,382-406,407-411 1wf4 d1wf4g3 G:140-153,384-409,409-413 1q3s d1q3sc3 C:150-166,380-405,405-410 1aon d1aonl3 L:140-153,385-410,410-414 1oel d1oelf3 F:140-153,385-410,410-414 1wf4 d1wf4f3 F:140-153,384-409,409-413 1wf4 d1wf4d3 D:140-153,384-409,409-413 1wf4 d1wf4a3 A:140-153,384-409,409-413 1q3s d1q3sg3 G:150-166,380-405,405-410 1q2v d1q2va3 A:150-165,380-405,405-410 1oel d1oelb3 B:140-153,385-410,410-414 1we3 d1we3g3 G:140-153,384-409,409-413 1oel d1oelc4 C:140-153,385-410,410-414 1q3r d1q3rd3 D:150-165,380-405,405-410 1q3s d1q3sf3 F:150-166,380-405,405-410 1q3s d1q3sd3 D:150-166,380-405,405-410 1q3s d1q3sa3 A:150-166,380-405,405-410 1wf4 d1wf4e3 E:140-153,384-409,409-413 1we3 d1we3b3 B:140-153,384-409,409-413 1q3q d1q3qc3 C:150-165,380-405,405-410 1q3q d1q3qa3 A:150-163,380-405,405-410 1we3 d1we3f3 F:140-153,384-409,409-413 1q3s d1q3sh3 H:150-166,380-405,405-410 1aon d1aonm3 M:140-153,385-410,410-414 1we3 d1we3e3 E:140-153,384-409,409-413 1aon d1aoni3 I:140-153,385-410,410-414 1oel d1oelg3 G:140-153,385-410,410-414 1grl d1grld3 D:140-153,385-410,410-414 1grl d1grlf3 F:140-153,385-410,410-414 1grl d1grlb3 B:140-153,385-410,410-414 1grl d1grlc3 C:140-153,385-410,410-414 1grl d1grlg3 G:140-153,385-410,410-414 1grl d1grla3 A:140-153,385-410,410-414 1grl d1grle3 E:140-153,385-410,410-414 1sjp d1sjpb3 B:138-151,382-407,407-411 1q3q d1q3qd3 D:150-166,380-405,405-410 1aon d1aonb3 B:140-153,385-410,410-414 1mnf d1mnfl3 L:140-153,385-410,410-414 1mnf d1mnfg3 G:140-153,385-410,410-414 1aon d1aona3 A:140-153,385-410,410-414 1mnf d1mnfe3 E:140-153,385-410,410-414 1oel d1oeld3 D:140-153,385-410,410-414 1mnf d1mnff3 F:140-153,385-410,410-414 1aon d1aond3 D:140-153,385-410,410-414 1mnf d1mnfn3 N:140-153,385-410,410-414 1mnf d1mnfh3 H:140-153,385-410,410-414 1aon d1aone3 E:140-153,385-410,410-414 1a6e d1a6eb3 B:147-164,378-403,403-408 1mnf d1mnfi3 I:140-153,385-410,410-414 1aon d1aonf3 F:140-153,385-410,410-414 1mnf d1mnfk3 K:140-153,385-410,410-414 1oel d1oele3 E:140-153,385-410,410-414 1mnf d1mnfb3 B:140-153,385-410,410-414 1aon d1aong3 G:140-153,385-410,410-414 1oel d1oela3 A:140-153,385-410,410-414 1a6d d1a6db3 B:147-164,378-403,403-408 1mnf d1mnfa3 A:140-153,385-410,410-414 1mnf d1mnfj3 J:140-153,385-410,410-414 1mnf d1mnfc3 C:140-153,385-410,410-414 1mnf d1mnfd3 D:140-153,385-410,410-414 1mnf d1mnfm3 M:140-153,385-410,410-414 1aon d1aonc3 C:140-153,385-410,410-414 1kp8 d1kp8b3 B:140-153,385-410,410-414 1kp8 d1kp8l3 L:140-153,385-410,410-414 1kp8 d1kp8g3 G:140-153,385-410,410-414 1kp8 d1kp8d3 D:140-153,385-410,410-414 1kp8 d1kp8f3 F:140-153,385-410,410-414 1kp8 d1kp8n3 N:140-153,385-410,410-414 1kp8 d1kp8h3 H:140-153,385-410,410-414 1kp8 d1kp8e3 E:140-153,385-410,410-414 1kp8 d1kp8i3 I:140-153,385-410,410-414 1kp8 d1kp8k3 K:140-153,385-410,410-414 1kp8 d1kp8j3 J:140-153,385-410,410-414 1kp8 d1kp8a3 A:140-153,385-410,410-414 1kp8 d1kp8c3 C:140-153,385-410,410-414 1kp8 d1kp8m3 M:140-153,385-410,410-414 1iok d1iokd3 D:140-153,385-409,410-414 1iok d1iokf3 F:140-153,385-409,410-414 1iok d1iokg3 G:140-153,385-409,410-414 1iok d1iokc3 C:140-153,385-409,410-414 1kpo d1kpot3 T:140-153,385-409,410-414 1j4z d1j4zg3 G:140-153,385-409,410-414 1kpo d1kpo13 1:140-153,385-409,410-414 1j4z d1j4zk3 K:140-153,385-409,410-414 1iok d1iokb3 B:140-153,385-409,410-414 1iok d1ioka3 A:140-153,385-409,410-414 1j4z d1j4zm3 M:140-153,385-409,410-414 1kpo d1kpox3 X:140-153,385-409,410-414 1j4z d1j4zc3 C:140-153,385-409,410-414 1iok d1ioke3 E:140-153,385-409,410-414 1kpo d1kpop3 P:140-153,385-409,410-414 1j4z d1j4zi3 I:140-153,385-409,410-414 1j4z d1j4zn3 N:140-153,385-409,410-414 1kpo d1kpov3 V:140-153,385-409,410-414 1kpo d1kpou3 U:140-153,385-409,410-414 1kpo d1kpoz3 Z:140-153,385-409,410-414 1j4z d1j4zf3 F:140-153,385-409,410-414 1j4z d1j4zh3 H:140-153,385-409,410-414 1j4z d1j4zl3 L:140-153,385-409,410-414 1kpo d1kpow3 W:140-153,385-409,410-414 1kpo d1kpor3 R:140-153,385-409,410-414 1kpo d1kpoy3 Y:140-153,385-409,410-414 1kpo d1kpoo3 O:140-153,385-409,410-414 1kpo d1kpo23 2:140-153,385-409,410-414 1j4z d1j4zj3 J:140-153,385-409,410-414 1j4z d1j4ze3 E:140-153,385-409,410-414 1j4z d1j4zb3 B:140-153,385-409,410-414 1j4z d1j4zd3 D:140-153,385-409,410-414 1kpo d1kpos3 S:140-153,385-409,410-414 1j4z d1j4za3 A:140-153,385-409,410-414 1kpo d1kpoq3 Q:140-153,385-409,410-414 135. d.340.1 CofE-like CofE-like consists of two different domains; d1: beta-alpha-beta-alpha-beta(2)-alpha-beta, mixed sheet of 5 strands, order:15234, strands 2 and 3 are parralel; d2 is inserted in d1 after strand 2 and comprises a helix-turn-helix motif and two 3-stranded sheets 2g9i d2g9ib1 B:59-70,72-84,83-90 2phn d2phnb1 B:59-70,72-83,83-90 2phn d2phna1 A:59-70,72-83,83-90 2g9i d2g9ia1 A:59-70,72-83,83-90 139. e.41.1 Adenylylcyclase toxin (the edema factor) Domain 1 has topological and active site similarity to the Nucleotidyltransferases (eg. 1kny N-domain); domain 3 binds calmodulin ! Adenylylcyclase toxin (the edema factor) 3 domains: (1&2) alpha+beta, with domain 2 being inserted in domain 1; (3) all-alpha 1sk6 d1sk6a_ A:297-306,308-323,323-329 1lvc d1lvcc_ C:297-306,308-323,323-329 1lvc d1lvca_ A:297-306,308-323,323-329 1k90 d1k90c_ C:297-306,308-323,323-329 1pk0 d1pk0c_ C:297-306,308-323,323-329 1pk0 d1pk0a_ A:297-306,308-323,323-329 1pk0 d1pk0b_ B:297-306,308-323,323-329 1sk6 d1sk6c_ C:297-306,308-323,323-329 1k93 d1k93c_ C:297-306,308-323,323-329 1k93 d1k93a_ A:297-306,308-323,323-329 1s26 d1s26c_ C:297-306,308-323,323-329 1s26 d1s26a_ A:297-306,308-323,323-329 1k90 d1k90a_ A:297-306,308-323,323-329 1k93 d1k93b_ B:297-306,308-323,323-329 1k8t d1k8ta_ A:297-306,308-323,323-329 1k90 d1k90b_ B:297-306,308-323,323-329 1s26 d1s26b_ B:297-306,308-323,323-329 1lvc d1lvcb_ B:297-306,308-323,323-329 1sk6 d1sk6b_ B:297-306,308-323,323-329 1k8t d1k8ta_ A:297-306,308-323,600-606 1lvc d1lvcc_ C:297-306,308-323,600-607 1lvc d1lvca_ A:297-306,308-323,600-607 1sk6 d1sk6a_ A:297-306,308-323,600-607 1k93 d1k93a_ A:297-306,308-323,600-607 1sk6 d1sk6c_ C:297-306,308-323,600-607 1lvc d1lvcb_ B:297-306,308-323,600-607 1k93 d1k93c_ C:297-306,308-323,600-607 1pk0 d1pk0a_ A:297-306,308-323,600-607 1k90 d1k90a_ A:297-306,308-323,600-607 1k90 d1k90c_ C:297-306,308-323,600-607 1pk0 d1pk0c_ C:297-306,308-323,600-607 1pk0 d1pk0b_ B:297-306,308-323,600-607 1s26 d1s26a_ A:297-306,308-323,600-607 1k93 d1k93b_ B:297-306,308-323,600-607 1sk6 d1sk6b_ B:297-306,308-323,600-607 1s26 d1s26c_ C:297-306,308-323,600-607 1s26 d1s26b_ B:297-306,308-323,600-607 1k90 d1k90b_ B:297-306,308-323,600-607 141. d.296.1 YktB/PF0168-like YktB/PF0168-like alpha-beta(4)-alpha-beta(2)-alpha-beta-alpha; 2 layers, a/b; antiparallel beta-sheet, order: 1234756; half-barrel shape; topological similarity to the MotA C-terminal domain-like fold (scop_cf 69651) and the Secretion chaperone-like fold (scop_cf 69634) 1yb3 d1yb3a1 A:87-99,121-132,135-144 2a8e d2a8ea1 A:109-121,150-165,167-176 2a8e d2a8ea1 A:120-129,150-165,167-176 150. d.276.1 Hypothetical protein yfbM Hypothetical protein yfbM beta-alpha(2)-beta-alpha(2)-beta(2)-alpha(n)-beta; 3 layers: a/b/a; antiparallel beta-sheet, order: 21543 1ryl d1ryla_ A:89-103,129-158,159-166 1ryl d1rylb_ B:89-103,129-158,159-166 153. d.197.1 Protein-L-isoaspartyl O-methyltransferase, C-terminal domain Protein-L-isoaspartyl O-methyltransferase, C-terminal domain beta-alpha-beta(4)-alpha-beta(2); 3 layers: beta/alpha/beta; buried helix 1dl5 d1dl5b2 B:236-249,280-294,301-307 1dl5 d1dl5a2 A:236-249,280-294,301-307 155. e.7.1 Carbohydrate phosphatase Carbohydrate phosphatase N-terminal domain is an alpha+beta, C-terminal domain is an alpha/beta with mixed beta-sheet 4fbp d4fbpb_ B:12-25,27-50,170-178 1eyk d1eyka_ A:12-25,27-50,170-178 1fpj d1fpjb_ B:12-25,27-50,170-178 1eyj d1eyjb_ B:12-25,27-50,170-178 1fj9 d1fj9b_ B:12-25,27-50,170-178 1fta d1ftab_ B:12-25,27-50,170-178 1lev d1leva_ A:12-25,27-51,170-178 2f3h d2f3hb1 B:12-25,27-50,170-178 2f3h d2f3ha1 A:12-25,27-50,170-178 1fj9 d1fj9a_ A:12-25,27-50,170-178 1eyj d1eyja_ A:12-25,27-50,170-178 4fbp d4fbpc_ C:12-25,27-50,170-178 1fsa d1fsab_ B:12-25,28-50,170-178 1nv7 d1nv7b_ B:2012-2025,2027-2050,2170-2178 1eyk d1eykb_ B:12-25,27-50,170-178 1kz8 d1kz8a_ A:12-25,27-50,170-178 1kz8 d1kz8f_ F:12-25,27-50,170-178 1fta d1ftad_ D:12-25,27-50,170-178 1nv7 d1nv7a_ A:1012-1025,1027-1050,1170-1178 4fbp d4fbpd_ D:12-25,27-50,170-178 4fbp d4fbpa_ A:12-25,27-50,170-178 2qvv d2qvva1 A:12-25,27-50,170-178 1rdy d1rdya_ A:12-25,27-50,170-178 1d9q d1d9qc_ C:20-32,35-59,195-203 1fpe d1fpea_ A:12-25,27-50,170-178 1dbz d1dbzb_ B:20-32,35-59,195-203 1dbz d1dbzc_ C:20-32,35-59,195-203 1dcu d1dcua_ A:20-32,35-59,195-203 1frp d1frpa_ A:12-25,27-50,170-178 1frp d1frpb_ B:12-25,27-50,170-178 1fpf d1fpfa_ A:12-25,27-50,170-178 1fsa d1fsaa_ A:12-25,28-50,170-178 1fpg d1fpga_ A:12-25,27-50,170-178 1dbz d1dbzd_ D:20-32,35-59,195-203 1fpd d1fpda_ A:12-25,27-50,170-178 1d9q d1d9qb_ B:20-32,35-59,195-203 2qvu d2qvua1 A:12-25,27-50,170-178 1d9q d1d9qd_ D:20-32,35-59,195-203 1rdz d1rdzb_ B:12-25,28-50,170-178 2qvv d2qvvb1 B:12-25,28-50,170-178 1fbp d1fbpa_ A:12-25,27-51,170-178 1fpe d1fpeb_ B:12-25,28-50,170-178 1dcu d1dcub_ B:20-32,35-59,195-203 1fpg d1fpgb_ B:12-25,28-50,170-178 1fpl d1fplb_ B:12-25,28-50,170-178 3fbp d3fbpb_ B:12-25,28-51,170-178 1d9q d1d9qa_ A:20-32,35-59,195-203 1fpi d1fpib_ B:12-25,28-50,170-178 1dcu d1dcud_ D:20-32,35-59,195-203 1dbz d1dbza_ A:20-32,35-59,195-203 1q9d d1q9da_ A:12-25,28-50,170-178 1rdy d1rdyb_ B:12-25,28-50,170-178 1fpd d1fpdb_ B:12-25,28-50,170-178 1fbh d1fbhb_ B:12-25,27-51,170-178 2qvu d2qvub1 B:12-25,28-50,170-178 1fbc d1fbcb_ B:12-25,27-51,170-178 2fbp d2fbpb_ B:12-25,27-51,170-178 1fpf d1fpfb_ B:12-25,28-50,170-178 1rdz d1rdza_ A:12-25,28-50,170-178 1fta d1ftaa_ A:12-25,28-50,170-178 1spi d1spia_ A:22-34,38-60,196-204 1lev d1levf_ F:12-25,28-51,170-178 1fpj d1fpja_ A:12-25,28-50,170-178 1fpl d1fpla_ A:12-25,28-50,170-178 1fpi d1fpia_ A:12-25,28-50,170-178 1spi d1spib_ B:22-35,37-60,196-203 1fbp d1fbpb_ B:12-25,28-51,170-178 5fbp d5fbpb_ B:12-25,27-51,170-178 1fta d1ftac_ C:12-25,28-50,170-178 1q9d d1q9db_ B:12-25,28-50,170-178 1rdx d1rdxb_ B:12-25,27-51,170-178 1spi d1spid_ D:22-35,36-60,196-204 1fbf d1fbfb_ B:12-25,27-51,170-178 1fpk d1fpkb_ B:12-25,28-51,170-178 1fbd d1fbdb_ B:12-25,28-51,170-178 3fbp d3fbpa_ A:12-25,27-51,170-178 1fpb d1fpbb_ B:12-25,27-51,170-178 2fbp d2fbpa_ A:212-220,220-233,259-265 3fbp d3fbpa_ A:212-220,220-233,260-265 2fbp d2fbpa_ A:12-25,28-51,170-178 3fbp d3fbpb_ B:212-220,220-233,260-265 1fbg d1fbga_ A:12-25,28-51,170-178 1fbe d1fbeb_ B:12-25,28-51,170-178 1fpb d1fpba_ A:12-25,28-51,170-178 2fbp d2fbpb_ B:212-220,220-233,260-265 1fbg d1fbgb_ B:12-25,28-51,170-178 1fbf d1fbfa_ A:12-25,28-51,170-178 5fbp d5fbpa_ A:12-25,28-51,170-178 1fbc d1fbca_ A:12-25,28-51,170-178 1fbh d1fbha_ A:12-25,28-51,170-178 1dcu d1dcuc_ C:237-244,245-258,284-290 1fpk d1fpka_ A:12-25,28-51,170-178 1fbd d1fbda_ A:12-25,28-51,170-178 1dcu d1dcuc_ C:20-32,35-65,195-203 1fbe d1fbea_ A:12-25,28-51,170-178 1jp4 d1jp4a_ A:6-33,92-99,175-179 1spi d1spic_ C:22-35,38-60,196-204 156. f.1.5 Exotoxin A, middle domain Toxins' membrane translocation domains multi-helical domains of various folds which is thought to unfold in the membrane 1ikp d1ikpa3 A:254-266,332-355,388-394 1ikq d1ikqa3 A:254-266,332-355,388-394 159. c.56.1 HybD-like the HybD fold coincides with the consensus core structure ! Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops 1cfz d1cfzf_ F:78-88,91-108,112-120 1cfz d1cfzb_ B:78-88,91-108,112-120 1cfz d1cfza_ A:78-88,91-108,112-120 1cfz d1cfze_ E:78-88,91-108,112-121 1cfz d1cfzd_ D:78-88,91-108,112-121 1cfz d1cfzc_ C:78-88,91-108,112-121 162. d.36.1 Chalcone isomerase Chalcone isomerase beta(3)-alpha(2)-beta-alpha(2)-beta3; 2 layers alpha/beta; antiparallel sheet: order 1234567 1eyq d1eyqb_ B:102-122,125-143,147-156 1eyq d1eyqa_ A:102-122,125-143,147-156 1jx1 d1jx1d_ D:102-122,125-143,147-156 1jx0 d1jx0a_ A:102-122,125-143,147-156 1jx1 d1jx1b_ B:102-122,125-142,147-156 1jx1 d1jx1e_ E:102-122,125-142,147-156 1jep d1jepb_ B:102-122,125-142,147-156 1eyp d1eypb_ B:102-122,125-142,147-156 1jx1 d1jx1a_ A:102-122,125-141,147-156 1jx0 d1jx0b_ B:102-122,125-142,147-156 1fm7 d1fm7b_ B:102-122,125-142,147-156 1jep d1jepa_ A:102-122,125-142,147-156 1fm7 d1fm7a_ A:102-122,125-142,147-156 1eyp d1eypa_ A:102-122,125-142,147-156 1fm8 d1fm8a_ A:102-122,125-142,147-156 1jx1 d1jx1f_ F:102-122,125-142,145-156 1fm8 d1fm8b_ B:102-122,125-142,145-156 1jx1 d1jx1c_ C:102-122,125-142,145-156 164. e.24.1 Ribosomal protein L1 Ribosomal protein L1 2 domains: (1) alpha+beta; (2) alpha/beta (interrupts domain 1) 1mzp d1mzpa_ A:4-17,175-195,199-208 1ad2 d1ad2a_ A:21-34,181-200,208-217 1cjs d1cjsa_ A:2-17,170-190,195-204 1zho d1zhoa1 A:21-34,181-200,208-217 2hgq d2hgqc1 C:21-34,181-200,208-217 2hgu d2hguc1 C:21-34,181-200,208-217 1zho d1zhog1 G:21-34,181-200,208-217 2hw8 d2hw8a1 A:21-34,181-200,208-217 1yl3 d1yl3c1 C:21-34,181-200,208-216 2hgj d2hgjc1 C:21-34,181-200,208-217 1zho d1zhoc1 C:21-34,181-200,208-217 1zho d1zhoe1 E:21-34,181-200,208-217 1dwu d1dwub_ B:2-18,170-190,195-204 1dwu d1dwua_ A:2-18,170-190,195-204 1u63 d1u63c1 C:1-18,170-190,195-204 1i2a d1i2aa_ A:2-18,170-190,195-204 1u63 d1u63a1 A:1-18,170-189,195-204 169. e.2.1 Replication terminator protein (Tus) Replication terminator protein (Tus) contains a cluster of helices and a beta-sandwich 2i06 d2i06a1 A:182-197,204-223,295-302 2ewj d2ewja1 A:182-197,204-223,295-302 2i05 d2i05a1 A:182-197,204-223,295-302 1ecr d1ecra_ A:182-197,204-223,295-302 2ewj d2ewja1 A:5-32,62-76,93-103 1ecr d1ecra_ A:5-32,62-77,93-102 2ewj d2ewja1 A:5-32,62-76,256-265 2i05 d2i05a1 A:5-32,62-77,93-103 2i06 d2i06a1 A:5-32,62-77,94-103 1ecr d1ecra_ A:5-32,62-77,256-264 2i05 d2i05a1 A:5-32,62-77,256-265 2i06 d2i06a1 A:5-32,62-77,259-265 170. d.283.1 Putative modulator of DNA gyrase, PmbA/TldD Putative modulator of DNA gyrase, PmbA/TldD consists of two different alpha+beta domains; d1: [duplication of alpha-beta(3)-alpha motif; 2 layers: a/b; antiparallel beta-sheet, order: 321456; strands 1, 2, 4 and 5 are twice longer than other secondary structures]; d2 [ complex fold; contains beta-barrel (n=5, S=10)] 1vl4 d1vl4b_ B:229-244,399-408,423-428 1vl4 d1vl4a_ A:229-244,399-408,423-428 174. a.102.2 Seven-hairpin glycosidases alpha/alpha toroid multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies 1hcu d1hcua_ A:174-193,194-211,225-229 1kkt d1kktb_ B:195-214,215-232,246-250 1kre d1kreb_ B:195-214,215-232,246-250 1krf d1krfb_ B:195-214,215-232,246-250 1kre d1krea_ A:195-214,215-232,246-251 2ri9 d2ri9a1 A:1195-1214,1215-1232,1246-1250 1krf d1krfa_ A:195-214,215-232,246-251 2ri9 d2ri9b1 B:2195-2214,2215-2232,2246-2251 1kkt d1kkta_ A:195-214,215-232,246-251 2ri8 d2ri8b1 B:2195-2214,2215-2232,2246-2250 1hcu d1hcud_ D:174-193,194-211,224-229 1hcu d1hcub_ B:174-193,194-211,224-229 2ri8 d2ri8a1 A:1195-1214,1215-1232,1246-1251 1fo2 d1fo2a_ A:327-347,348-368,375-380 1hcu d1hcuc_ C:174-193,194-211,224-229 1x9d d1x9da1 A:327-347,348-368,375-380 1fmi d1fmia_ A:327-347,348-368,375-380 1fo3 d1fo3a_ A:327-347,348-368,375-380 1dl2 d1dl2a_ A:204-223,224-243,254-259 1g6i d1g6ia_ A:204-223,224-243,254-259 1fo2 d1fo2a_ A:394-413,414-431,441-446 1fmi d1fmia_ A:394-413,414-431,441-446 1fo3 d1fo3a_ A:394-413,414-431,441-446 1hcu d1hcuc_ C:97-121,126-150,158-162 1g6i d1g6ia_ A:129-152,155-178,184-189 1dl2 d1dl2a_ A:129-152,155-178,184-189 1hcu d1hcub_ B:97-121,126-150,158-162 1hcu d1hcua_ A:97-121,126-150,158-162 1hcu d1hcud_ D:97-121,126-150,158-162 1g6i d1g6ia_ A:336-352,366-393,399-404 1dl2 d1dl2a_ A:336-352,366-393,399-404 1nxc d1nxca_ A:280-299,300-320,327-332 1kkt d1kktb_ B:119-143,148-172,180-184 1kre d1kreb_ B:119-143,148-172,180-184 1krf d1krfa_ A:119-143,148-172,180-184 1krf d1krfb_ B:119-143,148-172,180-184 2ri8 d2ri8a1 A:1119-1143,1148-1172,1180-1184 1kre d1krea_ A:119-143,148-172,180-184 1kkt d1kkta_ A:119-143,148-172,180-184 2ri9 d2ri9a1 A:1119-1143,1148-1172,1180-1184 1nxc d1nxca_ A:474-491,492-518,524-529 1hcu d1hcua_ A:306-324,325-346,353-357 2ri9 d2ri9b1 B:2119-2143,2148-2172,2180-2184 2ri8 d2ri8b1 B:2119-2143,2148-2172,2180-2184 1fo3 d1fo3a_ A:523-540,542-564,570-575 1fo2 d1fo2a_ A:523-540,542-564,570-575 1fmi d1fmia_ A:523-540,542-564,570-575 1x9d d1x9da1 A:523-540,542-564,570-574 1krf d1krfa_ A:328-346,347-369,375-379 1krf d1krfb_ B:328-346,347-369,375-379 1kkt d1kkta_ A:328-346,347-369,375-379 1hcu d1hcud_ D:306-324,325-347,353-357 1kre d1krea_ A:328-346,347-369,375-379 2ri8 d2ri8b1 B:2328-2346,2347-2369,2375-2379 175. e.72.1 SSO1389-like SSO1389-like 2 domains; d1: [alpha/beta, central parallel beta-sheet of 6 strands, order 321456, Rossmann-like]; d2: [alpha+beta, cluster of helices and a small 4-stranded beta-sheet] 2i71 d2i71a1 A:287-299,300-318,360-366 2i71 d2i71b1 B:287-299,300-318,360-366 177. d.58.47 Hypothetical protein VC0424 Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 1nxi d1nxia_ A:9-32,93-112,113-121 182. c.111.1 Activating enzymes of the ubiquitin-like proteins transfer adenylyl group to the C-terminal carboxyl group of the ubiquitin and MoaD/ThiS-related proteins ! the ATP nucleotide-binding site is similar to that of the NAD-binding Rossmann-folds ! Activating enzymes of the ubiquitin-like proteins 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 32145678; strands 6 and 8 are antiparallel to the rest 2nvu d2nvub1 B:1043-1055,2102-2116,2118-2125 1tt5 d1tt5c_ C:282-291,302-320,390-395 1yov d1yova1 A:282-291,302-320,390-395 3dbh d3dbha1 A:282-291,302-320,390-395 1tt5 d1tt5a_ A:282-291,302-320,390-395 1yov d1yovc1 C:282-291,302-320,390-395 3dbr d3dbra1 A:282-291,302-320,390-395 1r4n d1r4ng_ G:282-291,302-320,390-395 1r4n d1r4na_ A:282-291,302-320,390-395 1r4n d1r4ne_ E:282-291,302-320,390-395 3dbl d3dbla1 A:282-291,302-320,390-395 1r4n d1r4nc_ C:282-291,302-320,390-395 3dbl d3dblc1 C:282-291,302-320,390-395 1r4m d1r4mg_ G:282-291,302-320,390-395 1r4m d1r4ma_ A:282-291,302-320,390-395 1r4m d1r4mc_ C:282-291,302-320,390-395 1r4m d1r4me_ E:282-291,302-320,390-395 3dbr d3dbrc1 C:282-291,302-320,390-395 3dbh d3dbhe1 E:282-291,302-320,390-395 3dbh d3dbhg1 G:282-291,302-320,390-395 3dbl d3dblg1 G:282-291,302-320,390-395 3dbl d3dble1 E:282-291,302-320,390-395 2nvu d2nvua1 A:282-291,302-320,390-395 3dbh d3dbhc1 C:282-291,302-320,390-395 3dbr d3dbre1 E:282-291,302-320,390-395 3dbr d3dbrg1 G:282-291,302-320,390-395 183. e.48.1 Major capsid protein VP5 Major capsid protein VP5 large protein without apparent domain division 1no7 d1no7b_ B:624-635,831-842,954-958 1no7 d1no7a_ A:624-635,831-842,954-958 185. d.310.1 VC0467-like VC0467-like complex fold; contains bifurcated beta-sheet structure folded into pseudo barrel 2haf d2hafa1 A:61-70,123-130,138-144 2aj2 d2aj2a1 A:59-68,121-128,136-142 2gzo d2gzoa1 A:47-58,107-118,124-130 2do8 d2do8a1 A:48-57,109-119,124-130 2aj2 d2aj2a1 A:77-84,121-128,136-142 187. d.142.2 DNA ligase/mRNA capping enzyme, catalytic domain has a circularly permuted topology ! ATP-grasp Consists of two subdomains with different alpha+beta folds ! shares functional and structural similarities with the PIPK and protein kinase superfamilies 1p16 d1p16b2 B:49-56,201-212,218-227 1xdn d1xdna_ A:65-76,250-257,284-290 1b04 d1b04a_ A:89-105,257-272,278-287 1dgs d1dgsa3 A:90-105,260-275,282-290 1b04 d1b04b_ B:89-105,257-272,278-287 1p16 d1p16a2 A:49-56,201-215,218-227 1tae d1taed_ D:94-110,263-278,284-293 1ta8 d1ta8a_ A:94-110,263-278,284-293 1tae d1taea_ A:94-110,263-278,284-293 1dgs d1dgsb3 B:2090-2103,2260-2278,2282-2290 1v9p d1v9pa3 A:90-105,263-278,284-293 1tae d1taec_ C:94-110,263-278,284-293 1tae d1taeb_ B:94-110,263-278,284-293 1a0i d1a0ia2 A:15-27,200-215,218-223 1v9p d1v9pb3 B:2090-2106,2263-2281,2284-2293 193. d.123.1 Sporulation response regulatory protein Spo0B Histidine kinase-like fold lacking the kinase ATP-binding site ! Sporulation response regulatory protein Spo0B core: alpha-beta-alpha-beta(2)-(alpha)-beta(2) 1f51 d1f51b_ B:247-272,273-283,331-339 1f51 d1f51c_ C:447-472,473-483,531-539 1f51 d1f51a_ A:47-72,73-87,131-139 1ixm d1ixmb_ B:247-272,273-283,331-339 1f51 d1f51d_ D:647-672,673-683,731-739 1ixm d1ixma_ A:47-72,73-83,131-140 1f51 d1f51b_ B:247-272,273-283,290-298 1f51 d1f51a_ A:47-72,73-87,90-98 2ftk d2ftkd1 D:647-672,673-683,729-739 1f51 d1f51c_ C:447-472,473-483,490-498 2ftk d2ftkc1 C:447-472,473-483,529-539 2ftk d2ftka1 A:47-72,73-83,129-139 2ftk d2ftkb1 B:247-272,273-283,329-339 2ftk d2ftkc1 C:447-472,473-483,490-498 2ftk d2ftka1 A:47-72,73-83,90-98 2ftk d2ftkb1 B:247-272,273-283,290-298 2ftk d2ftkd1 D:647-672,673-683,690-698 1ixm d1ixma_ A:47-72,73-83,90-98 1ixm d1ixmb_ B:247-272,273-283,290-298 1f51 d1f51d_ D:647-672,673-683,690-698 197. c.32.1 Tubulin nucleotide-binding domain-like Tubulin nucleotide-binding domain-like 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456 1z2b d1z2bc1 C:205-218,223-240,268-274 1sa0 d1sa0c1 C:205-218,223-240,268-274 1sa0 d1sa0a1 A:205-218,223-240,268-274 1z2b d1z2ba1 A:205-218,223-240,268-274 1sa1 d1sa1c1 C:205-218,223-240,268-274 1z2b d1z2bb1 B:205-218,223-240,268-274 1sa1 d1sa1a1 A:205-218,223-240,268-274 1z2b d1z2bd1 D:205-218,223-240,268-274 1tub d1tubb1 B:205-218,223-241,266-274 1sa0 d1sa0d1 D:205-218,223-240,267-274 1tvk d1tvkb1 B:203-216,221-237,264-272 1sa0 d1sa0b1 B:205-218,223-240,267-274 1sa1 d1sa1d1 D:205-218,223-244,267-274 1sa1 d1sa1b1 B:205-218,223-244,267-274 2bto d2btob1 B:207-220,225-242,270-278 2vaw d2vawa1 A:165-174,178-197,222-232 2bto d2btoa1 A:207-220,225-246,270-278 1jff d1jffa1 A:205-218,223-245,265-274 2hxf d2hxfa1 A:205-218,223-245,265-274 2hxh d2hxha1 A:205-218,223-245,265-274 2btq d2btqa1 A:207-220,225-247,270-278 1rq7 d1rq7a1 A:162-170,175-194,217-230 2q1y d2q1ya1 A:162-170,175-194,217-230 1w5b d1w5ba1 A:192-200,203-228,245-257 1w5a d1w5aa1 A:192-200,203-228,245-257 1fsz d1fsza1 A:192-200,203-228,247-257 1w59 d1w59a1 A:192-200,203-228,245-257 1w58 d1w5811 1:192-200,203-228,247-257 1w5a d1w5ab1 B:192-200,203-228,245-257 1w5e d1w5ed1 D:192-200,203-228,247-257 1w5b d1w5bb1 B:192-200,203-228,245-257 1w5e d1w5ea1 A:191-200,203-228,245-257 1w59 d1w59b1 B:192-200,203-228,245-257 2vap d2vapa1 A:192-200,203-228,245-257 1w5e d1w5eg1 G:191-200,203-228,245-257 1w5e d1w5ec1 C:192-200,203-228,245-257 1w5e d1w5eb1 B:192-200,203-228,245-257 1w5e d1w5ei1 I:192-200,203-228,245-257 1w5e d1w5ef1 F:192-200,203-228,245-257 1w5e d1w5eh1 H:192-200,203-228,245-257 1w5e d1w5ee1 E:191-200,203-228,245-257 203. c.70.1 Nucleoside hydrolase Nucleoside hydrolase core: 3 layers, a/b/a ; mixed beta-sheet of 8 strands, order 32145687; strand 7 is antiparallel to the rest 2mas d2masc_ C:190-198,240-252,288-296 2mas d2masa_ A:190-198,240-252,288-296 2mas d2masd_ D:190-198,240-252,288-296 2mas d2masb_ B:190-198,240-252,288-296 1mas d1masb_ B:190-198,240-252,288-296 3b9x d3b9xc1 C:188-196,238-250,286-294 3b9x d3b9xa1 A:188-196,238-250,286-294 1q8f d1q8fc_ C:188-196,238-250,286-294 1q8f d1q8fb_ B:188-196,238-250,286-294 1mas d1masa_ A:190-198,240-252,288-296 1q8f d1q8fa_ A:188-196,238-250,286-294 1q8f d1q8fd_ D:188-196,238-250,286-294 1hp0 d1hp0b_ B:209-217,259-271,304-310 2ff2 d2ff2a1 A:209-217,259-271,304-310 2ff2 d2ff2b1 B:209-217,259-271,304-310 1hoz d1hozb_ B:209-217,259-271,304-310 1hoz d1hoza_ A:209-217,259-271,304-310 212. g.90.1 E6 C-terminal domain-like E6 C-terminal domain-like alpha+beta zinc-binding fold with topological similarity to the fold of lambda cro protein 2fk4 d2fk4a1 A:8-16,34-44,47-52 214. e.28.1 Reovirus inner layer core protein p3 Reovirus inner layer core protein p3 large protein without apparent domain division; has a number of all-alpha regions and one all beta domain near the C-end 1uf2 d1uf2a_ A:245-257,264-274,277-281 1uf2 d1uf2b_ B:245-257,264-274,277-281 2btv d2btvb_ B:167-175,176-191,857-863 216. d.135.1 The spindle assembly checkpoint protein mad2 N- and C-termini undergo large conformational rearrangement upon ligand binding ! The spindle assembly checkpoint protein mad2 core: alpha(2)-beta(2)-alpha-beta; mixed sheet: order 213 1klq d1klqa_ A:13-38,60-82,82-93 1go4 d1go4c_ C:12-36,58-79,80-92 1go4 d1go4a_ A:12-36,58-79,80-92 1go4 d1go4b_ B:12-36,58-79,80-92 2v64 d2v64a1 A:12-36,58-79,80-92 2v64 d2v64f1 F:12-36,58-79,80-92 2v64 d2v64c1 C:12-36,58-79,80-92 1go4 d1go4d_ D:12-36,58-79,80-92 1s2h d1s2ha_ A:10-36,58-80,81-92 217. d.248.1 Coproporphyrinogen III oxidase Coproporphyrinogen III oxidase alpha-beta(6)-alpha(2)-beta-alpha(n); 3 layers alpha/beta/alpha; antiparallel sheet: order 1234567 1vju d1vjua_ A:146-165,165-181,190-200 3dwr d3dwrb1 B:138-157,157-173,182-192 1vju d1vjub_ B:146-165,165-181,190-200 3dws d3dwsb1 B:138-157,157-173,182-192 3dws d3dwsa1 A:138-157,157-173,182-192 3dwr d3dwra1 A:138-157,157-173,182-192 2qt8 d2qt8a1 A:138-157,157-173,182-192 2qt8 d2qt8b1 B:138-157,157-173,182-192 1tkl d1tkla_ A:163-183,182-198,207-217 1tkl d1tklb_ B:163-183,182-198,207-217 1tlb d1tlbd_ D:163-183,182-198,207-217 1tlb d1tlbq_ Q:163-183,182-198,207-217 1tlb d1tlbw_ W:163-183,182-198,207-217 1tlb d1tlba_ A:163-183,182-198,207-217 1tlb d1tlbs_ S:163-183,182-198,207-217 1tlb d1tlbu_ U:163-183,182-198,207-217 227. c.150.1 EreA/ChaN-like there are four conserved residues in the putative active site: two His and two Glu EreA/ChaN-like Core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order:51423; 2g5g d2g5gx1 X:101-110,116-131,132-137 2ebh d2ebhx2 X:963-975,980-993,994-1000 2ebf d2ebfx2 X:963-975,980-993,994-1000 2ec5 d2ec5a2 A:963-975,980-993,994-1000 2ec5 d2ec5b2 B:963-975,980-993,994-1000 229. d.103.1 CytB endotoxin-like CytB endotoxin-like core: beta-alpha(2)-beta-alpha(2)-beta(4); 3 layers: a/b/a 1cby d1cbya_ A:106-123,128-144,163-176 1cby d1cbya_ A:106-123,128-144,210-226 1pp6 d1pp6c_ C:2074-2091,2095-2110,2128-2142 1pp6 d1pp6b_ B:1074-1091,1095-1110,1128-1142 1pp6 d1pp6d_ D:3074-3091,3095-3110,3127-3142 1vcy d1vcya_ A:74-91,95-110,127-142 1pp6 d1pp6a_ A:74-91,96-110,128-142 1pp6 d1pp6e_ E:4077-4091,4095-4110,4128-4142 230. d.7.1 LysM domain LysM domain beta-alpha(2)-beta; antiparallel strands 1y7m d1y7ma2 A:11-20,25-32,41-45 1y7m d1y7mb2 B:11-20,22-32,41-45 236. e.13.1 DNA primase core DNA primase core 2 domains: (1) alpha+beta; (2) toprim alpha/beta 1q57 d1q57b2 B:87-95,158-170,174-179 1q57 d1q57c2 C:87-95,158-170,174-179 1q57 d1q57d2 D:87-95,158-170,174-179 1q57 d1q57e2 E:87-95,158-170,174-179 1q57 d1q57g2 G:87-95,158-170,174-179 1q57 d1q57f2 F:87-95,158-170,174-179 1nui d1nuib1 B:87-95,158-170,174-179 1q57 d1q57a2 A:87-95,158-168,174-179 1nui d1nuia1 A:87-95,158-170,174-179 237. d.178.1 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains Aromatic aminoacid monoxygenases, catalytic and oligomerization domains unusual fold 1mmk d1mmka_ A:124-135,151-169,261-266 1mmk d1mmka_ A:124-135,151-169,240-245 2pah d2pahb_ B:314-331,368-376,384-390 1mmk d1mmka_ A:314-331,368-375,384-390 1tg2 d1tg2a_ A:314-331,368-375,384-390 1mmt d1mmta_ A:314-331,368-375,384-390 1kw0 d1kw0a_ A:314-331,368-375,384-390 2pah d2paha_ A:314-331,368-375,384-390 1lrm d1lrma_ A:314-331,368-375,384-390 1toh d1toha_ A:360-377,414-421,430-436 6pah d6paha_ A:314-331,368-375,384-390 2toh d2toha_ A:360-377,414-421,430-436 1pah d1paha_ A:314-331,368-375,384-390 5pah d5paha_ A:314-331,368-375,384-390 1ltz d1ltza_ A:168-185,223-230,239-245 3pah d3paha_ A:314-331,368-375,384-390 4pah d4paha_ A:314-331,368-375,384-390 1tdw d1tdwa_ A:314-331,368-375,384-390 1ltu d1ltua_ A:168-185,223-230,239-245 1dmw d1dmwa_ A:314-331,368-375,384-390 2phm d2phma2 A:314-331,368-375,384-390 1ltv d1ltva_ A:168-185,223-230,239-245 1tg2 d1tg2a_ A:124-135,151-168,261-266 1tdw d1tdwa_ A:124-135,151-168,261-266 1dmw d1dmwa_ A:124-135,151-168,261-266 1j8u d1j8ua_ A:124-135,151-168,261-266 1j8t d1j8ta_ A:124-135,151-168,261-266 1pah d1paha_ A:124-135,151-168,261-266 3pah d3paha_ A:124-135,151-168,261-266 1lrm d1lrma_ A:124-135,151-168,261-266 4pah d4paha_ A:124-135,151-168,261-266 6pah d6paha_ A:124-135,151-168,261-266 5pah d5paha_ A:124-135,151-168,261-266 1mmt d1mmta_ A:124-135,151-168,261-266 1phz d1phza2 A:124-135,151-168,261-266 2toh d2toha_ A:170-181,197-214,307-312 2phm d2phma2 A:124-135,151-168,261-266 238. d.179.1 Substrate-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase unusual fold 1r7i d1r7ia2 A:14-27,29-39,53-67 1r7i d1r7ib2 B:514-527,529-539,553-567 1t02 d1t02a2 A:14-27,29-39,53-67 1t02 d1t02b2 B:14-27,29-39,53-67 1qax d1qaxb2 B:514-527,529-539,553-567 1qax d1qaxa2 A:14-27,29-39,53-67 1r31 d1r31b2 B:514-527,529-539,553-567 1r31 d1r31a2 A:14-27,29-39,53-67 1qay d1qaya2 A:14-27,29-39,53-67 1qay d1qayb2 B:514-527,529-539,553-567 1dq8 d1dq8b4 B:752-765,767-776,789-801 1dqa d1dqab4 B:752-765,767-776,789-801 1dq8 d1dq8a4 A:752-765,767-776,789-801 1dqa d1dqac4 C:752-765,767-776,789-801 1hwk d1hwka2 A:752-765,767-776,789-801 1hwk d1hwkd2 D:752-765,767-776,789-801 1hwk d1hwkc2 C:752-765,767-776,789-801 1hwk d1hwkb2 B:752-765,767-776,789-801 1dq8 d1dq8c4 C:752-765,767-776,789-801 1dq8 d1dq8d4 D:752-765,767-776,789-801 1hw9 d1hw9b2 B:752-765,767-776,789-801 1dq9 d1dq9c4 C:752-765,767-776,789-801 1hwl d1hwla2 A:752-765,767-776,789-801 1hw9 d1hw9c2 C:752-765,767-776,789-801 1hw8 d1hw8b2 B:752-765,767-776,789-801 1hwl d1hwlc2 C:752-765,767-776,789-801 1hwl d1hwlb2 B:752-765,767-776,789-801 1hwl d1hwld2 D:752-765,767-776,789-801 1dq9 d1dq9b4 B:752-765,767-776,789-801 1hwj d1hwja2 A:752-765,767-776,789-801 1dq9 d1dq9a4 A:752-765,767-776,789-801 1hw8 d1hw8c2 C:752-765,767-776,789-801 1hw9 d1hw9d2 D:752-765,767-776,789-801 1dq9 d1dq9d4 D:752-765,767-776,789-801 1hw9 d1hw9a2 A:752-765,767-776,789-801 1dqa d1dqaa4 A:752-765,767-776,789-801 1hw8 d1hw8a2 A:752-765,767-776,789-801 1dqa d1dqad4 D:752-765,767-776,789-801 1hwj d1hwjc2 C:752-765,767-776,789-801 1hwj d1hwjd2 D:752-765,767-776,789-801 1hw8 d1hw8d2 D:752-765,767-776,789-801 1hwj d1hwjb2 B:752-765,767-776,789-801 1hwi d1hwib2 B:752-765,767-776,789-801 1hwi d1hwic2 C:752-765,767-776,789-801 1hwi d1hwid2 D:752-765,767-776,789-801 1hwi d1hwia2 A:752-765,767-776,789-801 1r7i d1r7ia2 A:258-271,283-297,313-323 1t02 d1t02a2 A:258-271,283-297,313-323 1t02 d1t02b2 B:258-271,283-297,313-323 1qay d1qaya2 A:258-271,283-297,313-323 1r31 d1r31b2 B:758-771,783-797,813-823 1qay d1qayb2 B:758-771,783-797,813-823 1r31 d1r31a2 A:258-271,283-297,313-323 1qax d1qaxb2 B:758-771,783-799,813-823 1r7i d1r7ib2 B:758-771,783-799,813-823 1qax d1qaxa2 A:258-271,283-299,313-323 1t02 d1t02a2 A:270-281,283-297,313-323 1qay d1qaya2 A:270-281,283-297,313-323 1qay d1qayb2 B:770-781,783-797,813-823 1t02 d1t02b2 B:270-281,283-297,313-323 1r7i d1r7ia2 A:270-281,283-297,313-323 1r31 d1r31b2 B:770-781,783-797,813-823 1r31 d1r31a2 A:270-281,283-297,313-323 1qax d1qaxa2 A:270-281,283-299,313-323 1qax d1qaxb2 B:770-781,783-799,813-823 1r7i d1r7ib2 B:770-781,783-799,813-823 243. d.261.1 Hypothetical protein PH1602 Hypothetical protein PH1602 complex alpha+beta fold; contains a region of similarity to the ferredoxin-like fold 1uc2 d1uc2a_ A:162-169,275-312,319-328 1uc2 d1uc2b_ B:162-169,275-312,320-328 244. e.17.1 D-aminoacid aminotransferase-like PLP-dependent enzymes D-aminoacid aminotransferase-like PLP-dependent enzymes 2 domains: (1) alpha+beta: beta3-alpha2-beta2; (2) alpha/beta, a part of its mixed sheet forms barrel: n=6, S=8 1i2l d1i2la_ A:38-54,59-75,75-89 1iye d1iyeb_ B:52-68,74-90,93-102 3daa d3daab_ B:43-59,65-81,83-94 1iyd d1iydb_ B:52-68,74-90,92-102 1iyd d1iydc_ C:52-68,74-90,92-102 1iye d1iyea_ A:52-68,74-90,92-102 1a3g d1a3ga_ A:52-68,74-90,93-102 1i1k d1i1ka_ A:52-68,74-90,93-102 1i1k d1i1kc_ C:1052-1068,1074-1090,1093-1102 1iyd d1iyda_ A:52-68,74-90,92-102 4daa d4daaa_ A:43-59,65-81,83-94 1i1k d1i1kb_ B:552-568,574-590,593-602 1g2w d1g2wb_ B:43-59,65-81,83-94 1et0 d1et0a_ A:52-68,74-90,90-106 1iye d1iyec_ C:52-68,74-90,92-102 1i2k d1i2ka_ A:38-54,59-75,75-89 1a0g d1a0ga_ A:43-59,65-81,83-94 3daa d3daaa_ A:43-59,65-81,83-94 1g2w d1g2wa_ A:43-59,65-81,83-94 1a3g d1a3gc_ C:52-68,74-90,93-102 2dab d2daba_ A:43-59,65-81,83-94 1a3g d1a3gb_ B:52-68,74-90,93-102 1a0g d1a0gb_ B:43-59,65-81,83-94 1i1l d1i1lc_ C:1052-1068,1074-1090,1092-1102 4daa d4daab_ B:43-59,65-81,83-94 1daa d1daaa_ A:43-59,65-81,83-94 1i1l d1i1lb_ B:552-568,574-590,592-602 1i1m d1i1mc_ C:1052-1068,1074-1090,1092-1102 1i1m d1i1ma_ A:52-68,74-90,92-102 1i1l d1i1la_ A:52-68,74-90,92-102 1i1m d1i1mb_ B:552-568,574-590,592-602 2dab d2dabb_ B:43-59,65-81,83-94 2daa d2daab_ B:43-59,65-81,83-94 1daa d1daab_ B:43-59,65-81,83-94 2daa d2daaa_ A:43-59,65-81,83-94 2hhf d2hhfa1 A:92-108,113-129,137-149 1ekv d1ekva_ A:92-108,113-129,137-149 5daa d5daab_ B:43-59,65-81,83-96 5daa d5daaa_ A:43-59,65-81,83-96 1ekp d1ekpa_ A:92-108,113-129,137-150 1kta d1ktaa_ A:92-108,113-129,137-150 1ekf d1ekfb_ B:92-108,113-129,137-150 2a1h d2a1hb1 B:92-108,113-129,137-150 1kta d1ktab_ B:592-608,613-629,637-650 2a1h d2a1ha1 A:92-108,113-129,137-150 1ekf d1ekfa_ A:92-108,113-129,137-150 1ekp d1ekpb_ B:92-108,113-129,137-150 1ekv d1ekvb_ B:92-108,113-129,137-150 1kt8 d1kt8a_ A:92-108,113-129,137-150 1kt8 d1kt8b_ B:592-608,613-629,637-650 2hhf d2hhfb1 B:592-608,613-629,637-650 246. d.213.1 VSV matrix protein VSV matrix protein beta-alpha(2)-beta(4)-alpha-beta(2); two layers: alpha/beta; bifurcated coiled beta-sheet: order of the first 5 strands: 23154 1lg7 d1lg7a_ A:80-93,101-116,166-180 247. d.110.10 YNR034W-A-like Profilin-like core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha 2grg d2grga1 A:30-37,38-49,55-63 250. d.163.1 DNA breaking-rejoining enzymes DNA breaking-rejoining enzymes core: alpha3-beta3-alpha4; one side of beta-sheet is exposed 1a0p d1a0pa2 A:129-146,148-155,165-172 1ma7 d1ma7a2 A:154-171,173-181,193-198 3crx d3crxa2 A:154-171,173-180,192-198 2crx d2crxa2 A:154-171,173-180,192-196 1pvq d1pvqa2 A:154-171,173-180,192-198 1kbu d1kbua2 A:154-171,173-180,192-198 1q3v d1q3ve2 E:154-171,173-180,191-197 1ouq d1ouqe2 E:154-171,173-180,191-197 1q3u d1q3ue2 E:154-171,173-180,191-197 2hoi d2hoia2 A:154-171,173-180,191-197 1drg d1drga2 A:154-171,173-180,191-197 1q3u d1q3ua2 A:154-171,173-180,191-197 2hof d2hofa2 A:154-171,173-180,191-196 1p4e d1p4ea2 A:302-319,351-360,361-367 2hoi d2hoig2 G:154-171,173-180,191-197 1m6x d1m6xc2 C:302-319,351-360,361-367 1nzb d1nzba2 A:154-171,173-180,191-197 1m6x d1m6xa2 A:302-319,351-360,361-367 1p4e d1p4ec2 C:302-319,351-360,361-367 1ouq d1ouqa2 A:154-171,173-180,191-197 1flo d1flod2 D:302-319,351-360,361-367 1p4e d1p4eb2 B:302-319,351-360,361-367 1flo d1floc2 C:302-319,351-360,361-367 3crx d3crxb2 B:154-171,173-180,191-198 1q3v d1q3va2 A:154-171,173-180,191-197 1p4e d1p4ed2 D:302-319,351-360,361-367 1nzb d1nzbe2 E:154-171,173-180,191-197 1m6x d1m6xb2 B:302-319,351-360,361-367 1m6x d1m6xd2 D:302-319,351-360,361-367 1flo d1floa2 A:302-319,351-360,361-367 1pvr d1pvrb2 B:154-171,173-180,191-198 1flo d1flob2 B:302-319,351-360,361-367 1pvq d1pvqb2 B:154-171,173-180,191-198 2hoi d2hoih2 H:154-171,173-180,191-198 1nzb d1nzbf2 F:154-171,173-180,191-198 2hoi d2hoib2 B:154-171,173-180,191-198 2hof d2hofb2 B:154-171,173-180,191-198 1ouq d1ouqb2 B:154-171,173-180,191-198 5crx d5crxb2 B:154-171,173-180,191-198 1pvp d1pvpb2 B:154-171,173-180,191-198 1q3v d1q3vb2 B:154-171,173-180,191-198 1q3u d1q3ub2 B:154-171,173-180,191-198 1xns d1xnsb2 B:154-171,173-180,191-198 1kbu d1kbub2 B:154-171,173-180,191-198 1crx d1crxb2 B:154-171,173-180,191-198 1q3u d1q3uf2 F:154-171,173-180,191-198 4crx d4crxb2 B:154-171,173-180,191-198 1nzb d1nzbb2 B:154-171,173-180,191-198 1z1b d1z1bb2 B:196-210,212-219,227-235 1xo0 d1xo0a2 A:154-171,173-180,191-198 4crx d4crxa2 A:154-171,173-180,191-198 1xo0 d1xo0b2 B:154-171,173-180,191-198 1f44 d1f44a2 A:154-171,173-180,191-198 1crx d1crxa2 A:154-171,173-180,191-198 1ma7 d1ma7b2 B:154-171,173-180,191-198 2crx d2crxb2 B:154-171,173-180,191-198 1z1b d1z1ba2 A:196-210,212-219,227-235 1p7d d1p7da_ A:196-210,212-219,227-235 1p7d d1p7db_ B:196-210,212-219,227-235 1q3v d1q3vf2 F:154-171,173-180,191-198 1xns d1xnsa2 A:154-171,173-180,191-198 1ae9 d1ae9a_ A:196-210,212-219,227-235 1ouq d1ouqf2 F:154-171,173-180,191-198 1ae9 d1ae9b_ B:196-210,212-219,227-235 1z1g d1z1gc2 C:196-210,212-219,227-235 1z1g d1z1gb2 B:196-210,212-219,227-235 1z1g d1z1gd2 D:196-210,212-219,227-235 1pvp d1pvpa2 A:154-171,173-180,191-198 1z1g d1z1ga2 A:196-210,212-219,227-235 1pvr d1pvra2 A:154-171,173-180,191-198 256. d.309.1 AMMECR1-like AMMECR1-like duplication; contains two beta(2)-alpha-beta(2) structural repeats, swapped with C-terminal strands; extra N-terminal helix and C-terminal strand 1vaj d1vaja1 A:120-129,172-179,181-195 1zq7 d1zq7b1 B:115-124,167-174,175-189 1zq7 d1zq7c1 C:115-124,167-174,175-189 1zq7 d1zq7d1 D:115-124,167-174,175-189 1zq7 d1zq7a1 A:115-124,167-174,175-189 1wsc d1wsca1 A:130-139,168-181,192-204 257. b.23.3 Acetamidase/Formamidase-like decorated fold with additional structures; contains extra C-terminal alpha+beta subdomain: beta(2)-alpha(2)-beta(2): antiparallel beta-sheet, order 1243 ! CUB-like sandwich, 10 strands in 2 sheets; jelly-roll 2f4l d2f4ld1 D:224-245,247-258,270-279 2f4l d2f4la1 A:224-245,247-258,270-279 2f4l d2f4lb1 B:224-245,247-258,270-279 2f4l d2f4lc1 C:224-245,247-258,270-279 261. b.8.1 TRAF domain-like has a circularly permuted immunoglobulin-fold topology with extra strand ! TRAF domain-like sandwich; 8 strands in 2 sheets; greek-key 1d01 d1d01d1 D:360-371,474-481,488-497 1d01 d1d01f1 F:360-371,474-481,488-497 1czy d1czyc1 C:360-371,474-481,488-497 1d01 d1d01e1 E:360-371,474-481,488-497 1d0j d1d0ja1 A:360-371,474-481,488-497 1d01 d1d01b1 B:360-371,474-481,488-497 1d0j d1d0jd1 D:360-371,474-481,488-497 1d0j d1d0jf1 F:360-371,474-481,488-497 1d0j d1d0jb1 B:360-371,474-481,488-497 1d01 d1d01a1 A:360-371,474-481,488-497 1czy d1czya1 A:360-371,474-481,488-497 1ca4 d1ca4d1 D:360-371,474-481,488-497 1czy d1czyb1 B:360-371,474-481,488-497 1ca4 d1ca4b1 B:360-371,474-481,488-497 1d0a d1d0ac1 C:360-371,474-481,488-497 1d0a d1d0ad1 D:360-371,474-481,488-497 1d0a d1d0af1 F:360-371,474-481,488-497 1d0a d1d0aa1 A:360-371,474-481,488-497 1d0a d1d0ae1 E:360-371,474-481,488-497 1d0a d1d0ab1 B:360-371,474-481,488-497 1d00 d1d00c1 C:360-371,474-482,488-497 1czz d1czzb1 B:360-371,474-481,488-497 1d00 d1d00e1 E:360-371,474-482,488-497 1czz d1czza1 A:360-371,474-481,488-497 1d00 d1d00a1 A:360-371,474-482,488-497 1czz d1czzc1 C:360-371,474-481,488-497 1d00 d1d00d1 D:360-371,474-481,488-497 1d00 d1d00h1 H:360-371,474-482,488-497 1d00 d1d00g1 G:360-371,474-482,488-497 1d0j d1d0jc1 C:360-371,474-481,488-498 1d00 d1d00b1 B:360-371,474-482,488-497 1d01 d1d01c1 C:360-371,474-481,488-498 1ca4 d1ca4c1 C:360-371,474-481,488-498 1ca9 d1ca9b1 B:360-371,474-481,488-497 1ca4 d1ca4a1 A:360-371,474-481,488-498 1d00 d1d00f1 F:360-371,474-482,488-497 1ca4 d1ca4f1 F:360-371,474-481,488-498 1ca4 d1ca4e1 E:360-371,474-481,488-498 1ca9 d1ca9a1 A:360-371,474-481,488-497 1ca9 d1ca9f1 F:360-371,474-481,488-497 1ca9 d1ca9e1 E:360-371,474-482,488-497 1ca9 d1ca9d1 D:360-371,474-481,488-497 1flk d1flkb1 B:360-371,475-483,488-497 1fll d1flla1 A:360-371,475-483,488-497 1fll d1fllb1 B:360-371,475-483,488-497 1ca9 d1ca9c1 C:360-371,474-481,488-498 1l0a d1l0aa1 A:360-371,475-483,488-497 1flk d1flka1 A:360-371,475-483,488-497 1kzz d1kzza1 A:360-371,475-483,488-497 264. d.335.1 L,D-transpeptidase pre-catalytic domain-like L,D-transpeptidase pre-catalytic domain-like unusual fold, made of four helices and four 2-3 stranded beta-sheets 1zat d1zata2 A:261-277,305-320,328-332 266. d.320.1 YojJ-like YojJ-like alpha-beta-X-beta-alpha-beta(2)-alpha-beta(3); 3 layers: a/b/a; 7-stranded mixed beta-sheet, order 2431567; strands 1 and 3 are parallel to each other 2fb5 d2fb5a1 A:42-75,76-91,92-100 2fb5 d2fb5b1 B:42-75,76-91,92-100 2fb5 d2fb5c1 C:42-75,76-91,92-100 2fb5 d2fb5a1 A:42-75,76-91,191-197 2fb5 d2fb5b1 B:42-75,76-91,191-197 2fb5 d2fb5c1 C:42-75,76-91,191-197 272. e.44.1 2-methylcitrate dehydratase PrpD 2-methylcitrate dehydratase PrpD consists of an all-alpha and alpha+beta domains 1szq d1szqb_ B:347-359,373-384,403-412 1szq d1szqa_ A:347-359,373-384,403-412 276. d.52.5 Probable GTPase Der, C-terminal domain possible distant relative of the Era C-terminal domain lacking the KH motif ! Alpha-lytic protease prodomain-like core: alpha-beta(2)-(alpha)-beta; 2 layers: alpha/beta 1mky d1mkya3 A:68-83,361-377,382-392 281. d.117.1 Thymidylate synthase/dCMP hydroxymethylase Thymidylate synthase/dCMP hydroxymethylase contains large mixed beta-sheet 1vzb d1vzba_ A:1-17,221-245,249-257 1njc d1njca_ A:1-17,221-245,249-257 1tsy d1tsya_ A:1-17,221-245,249-257 1hzw d1hzwb_ B:6-44,218-242,243-254 1i00 d1i00b_ B:6-44,218-242,243-254 1lca d1lcaa_ A:1-17,221-245,246-257 1hvy d1hvyc_ C:28-44,218-242,243-254 1i00 d1i00a_ A:6-44,218-242,243-254 1vzc d1vzca_ A:1-17,221-245,247-257 1tvw d1tvwa_ A:1-17,221-245,247-257 1hzw d1hzwa_ A:5-44,218-242,243-254 1hvy d1hvya_ A:28-44,218-242,243-254 1jmg d1jmga_ A:1-17,221-245,246-257 1bp6 d1bp6a_ A:1-17,221-245,246-257 1tvv d1tvva_ A:1-17,221-245,246-257 1nja d1njaa_ A:1-17,221-245,246-257 1tda d1tdaa_ A:1-17,221-245,246-257 1jmi d1jmia_ A:1-17,221-245,246-257 1vzd d1vzda_ A:1-17,221-245,246-257 1thy d1thya_ A:1-17,221-245,246-257 1jmf d1jmfa_ A:1-17,221-245,246-257 1nje d1njea_ A:1-17,221-245,247-257 1tsv d1tsva_ A:1-17,221-245,247-257 2tdm d2tdma_ A:1-17,221-245,246-257 1hvy d1hvyb_ B:28-44,218-242,243-254 2tdd d2tdda_ A:1-17,221-245,246-257 1tsl d1tsla_ A:1-17,221-245,246-257 1jmh d1jmha_ A:1-17,221-245,246-257 1tsw d1tswa_ A:1-17,221-245,246-257 1njb d1njba_ A:1-17,221-245,247-257 1tsx d1tsxa_ A:1-17,221-245,246-257 1vze d1vzea_ A:1-17,221-245,247-257 1hvy d1hvyd_ D:28-44,218-242,243-254 1tsm d1tsma_ A:1-17,221-245,246-257 4tms d4tmsa_ A:1-17,221-245,246-257 1bo8 d1bo8a_ A:1-17,221-245,246-257 1tvu d1tvua_ A:1-17,221-245,247-257 1njd d1njda_ A:1-17,221-245,246-257 1tsz d1tsza_ A:1-17,221-245,246-257 1bpj d1bpja_ A:1-17,221-245,246-257 1lcb d1lcba_ A:1-17,221-245,246-257 1ju6 d1ju6b_ B:28-44,218-242,243-254 1bo7 d1bo7a_ A:1-17,221-245,246-257 1ju6 d1ju6a_ A:28-44,218-242,243-254 1ju6 d1ju6d_ D:28-44,218-242,243-254 1ju6 d1ju6c_ C:28-44,218-242,243-254 1bp0 d1bp0a_ A:1-17,221-245,246-257 1rts d1rtsa_ A:22-38,212-236,237-248 1rts d1rtsb_ B:22-38,212-236,237-248 2oip d2oipa2 A:235-251,426-450,451-462 1lca d1lcaa_ A:1-17,221-245,256-262 2tsr d2tsrc_ C:22-38,212-236,237-248 1sej d1sejd2 D:235-251,426-450,451-462 1sej d1seje2 E:235-251,426-450,451-462 1sej d1sejb2 B:235-251,426-450,451-462 2tsr d2tsra_ A:22-38,212-236,237-248 1sej d1sejc2 C:235-251,426-450,451-462 1sej d1seja2 A:235-251,426-450,451-462 1tdb d1tdba_ A:1-17,221-245,246-257 1hw4 d1hw4a_ A:28-44,218-242,243-254 1hw3 d1hw3a_ A:28-44,218-242,243-254 2tsr d2tsrb_ B:22-38,212-236,237-248 2tsr d2tsrd_ D:22-38,212-236,237-248 1lcb d1lcba_ A:1-17,221-245,256-262 1vza d1vzaa_ A:1-17,221-245,247-257 1qzf d1qzfd2 D:235-251,426-450,451-462 1qzf d1qzfa2 A:235-251,426-450,451-462 1juj d1jujd_ D:28-44,218-242,243-254 1juj d1jujb_ B:28-44,218-242,243-254 1juj d1juja_ A:28-44,218-242,243-254 1juj d1jujc_ C:28-44,218-242,243-254 2oip d2oipd2 D:235-251,426-450,451-462 1qzf d1qzfb2 B:235-251,426-450,451-462 1qzf d1qzfe2 E:235-251,426-450,451-462 1qzf d1qzfc2 C:235-251,426-450,451-462 1vzd d1vzda_ A:1-17,221-245,256-262 2tdm d2tdma_ A:1-17,221-245,256-262 2oip d2oipe2 E:235-251,426-450,451-462 1j3i d1j3id_ D:323-339,513-537,538-549 1i00 d1i00a_ A:6-44,218-242,253-259 1vzc d1vzca_ A:1-17,221-245,256-262 1j3j d1j3jd_ D:323-339,513-537,538-549 2oip d2oipc2 C:235-251,426-450,451-462 1j3k d1j3kc_ C:323-339,513-537,538-549 1j3i d1j3ic_ C:323-339,513-537,538-549 2oip d2oipb2 B:235-251,426-450,451-462 1j3k d1j3kd_ D:323-339,513-537,538-549 1j3j d1j3jc_ C:323-339,513-537,538-549 4tms d4tmsa_ A:1-17,221-245,256-262 1jmi d1jmia_ A:1-17,221-245,256-262 1jmf d1jmfa_ A:1-17,221-245,256-262 1tdc d1tdca_ A:1-17,221-245,247-257 1i00 d1i00b_ B:6-44,218-242,253-259 1hzw d1hzwb_ B:6-44,218-242,253-259 1f4g d1f4ga_ A:1-15,169-190,194-205 1tvu d1tvua_ A:1-17,221-245,256-262 1hzw d1hzwa_ A:5-44,218-242,253-259 1tvw d1tvwa_ A:1-17,221-245,256-262 1njc d1njca_ A:1-17,221-245,256-262 1bp6 d1bp6a_ A:1-17,221-245,256-262 1vzb d1vzba_ A:1-17,221-245,256-262 1tsm d1tsma_ A:1-17,221-245,256-262 1nja d1njaa_ A:1-17,221-245,256-262 1bko d1bkoc_ C:3-19,184-208,209-220 1f28 d1f28c_ C:3-20,202-226,227-238 1f28 d1f28a_ A:3-20,202-226,227-238 1bsp d1bspa_ A:3-19,184-208,209-220 1hvy d1hvyc_ C:28-44,218-242,253-259 1f28 d1f28b_ B:3-20,202-226,227-238 1f4g d1f4gb_ B:1-15,169-190,194-205 1bkp d1bkpb_ B:3-19,184-208,209-220 1tsx d1tsxa_ A:1-17,221-245,256-262 1f28 d1f28d_ D:3-20,202-226,227-238 2tdd d2tdda_ A:1-17,221-245,256-262 1njd d1njda_ A:1-17,221-245,256-262 1hvy d1hvya_ A:28-44,218-242,253-259 1bkp d1bkpa_ A:3-19,184-208,209-220 1jmg d1jmga_ A:1-17,221-245,256-262 1tsy d1tsya_ A:1-17,221-245,256-262 1bko d1bkob_ B:3-19,184-208,209-220 1nje d1njea_ A:1-17,221-245,256-262 1tvv d1tvva_ A:1-17,221-245,256-262 1tsl d1tsla_ A:1-17,221-245,256-262 1tda d1tdaa_ A:1-17,221-245,256-262 1bpj d1bpja_ A:1-17,221-245,256-262 1thy d1thya_ A:1-17,221-245,256-262 1bo8 d1bo8a_ A:1-17,221-245,256-262 1bsf d1bsfa_ A:3-19,184-208,209-220 1bsf d1bsfb_ B:3-19,184-208,209-220 1bo7 d1bo7a_ A:1-17,221-245,256-262 1bsp d1bspb_ B:3-19,184-208,209-220 1hvy d1hvyb_ B:28-44,218-242,253-259 1ci7 d1ci7b_ B:3-20,202-226,227-238 1tsw d1tswa_ A:1-17,221-245,256-262 1tsv d1tsva_ A:1-17,221-245,256-262 1tsz d1tsza_ A:1-17,221-245,256-262 1vze d1vzea_ A:1-17,221-245,256-262 1bp0 d1bp0a_ A:1-17,221-245,256-262 1njb d1njba_ A:1-17,221-245,256-262 1hvy d1hvyd_ D:28-44,218-242,253-259 1bkp d1bkpb_ B:3-19,184-208,219-225 1tdb d1tdba_ A:1-17,221-245,256-262 1rts d1rtsa_ A:22-38,212-236,247-253 1jmh d1jmha_ A:1-17,221-245,256-262 1ci7 d1ci7a_ A:3-20,202-226,227-238 2tsr d2tsra_ A:22-38,212-236,247-253 1rts d1rtsb_ B:22-38,212-236,247-253 1j3j d1j3jd_ D:323-339,513-537,548-554 1ju6 d1ju6b_ B:28-44,218-242,253-259 1ju6 d1ju6a_ A:28-44,218-242,253-259 1b02 d1b02a_ A:2-19,184-208,209-220 1ju6 d1ju6d_ D:28-44,218-242,253-259 2tsr d2tsrd_ D:22-38,212-236,247-253 1ju6 d1ju6c_ C:28-44,218-242,253-259 1jg0 d1jg0a_ A:1-15,169-193,194-205 1bko d1bkoc_ C:3-19,184-208,219-225 2tsr d2tsrc_ C:22-38,212-236,247-253 1tdc d1tdca_ A:1-17,221-245,256-262 1bkp d1bkpa_ A:3-19,184-208,219-225 1vza d1vzaa_ A:1-17,221-245,256-262 1sej d1seje2 E:235-251,426-450,461-467 2a9w d2a9wd1 D:1-15,169-193,194-205 1sej d1sejd2 D:235-251,426-450,461-467 1bko d1bkoa_ A:3-19,184-208,209-220 1bsf d1bsfa_ A:3-19,184-208,219-225 1bsf d1bsfb_ B:3-19,184-208,219-225 2a9w d2a9wa1 A:1-15,169-193,194-205 1sej d1sejb2 B:235-251,426-450,461-467 1hw4 d1hw4a_ A:28-44,218-242,253-259 1sej d1sejc2 C:235-251,426-450,461-467 1sej d1seja2 A:235-251,426-450,461-467 1kzj d1kzjb_ B:1-15,169-193,194-205 1bsp d1bspb_ B:3-19,184-208,219-225 2a9w d2a9wc1 C:1-15,169-193,194-205 1bko d1bkob_ B:3-19,184-208,219-225 1hw3 d1hw3a_ A:28-44,218-242,253-259 1j3i d1j3ic_ C:323-339,513-537,548-554 2tsr d2tsrb_ B:22-38,212-236,247-253 1j3i d1j3id_ D:323-339,513-537,548-554 1bsp d1bspa_ A:3-19,184-208,219-225 1j3k d1j3kd_ D:323-339,513-537,548-554 1j3k d1j3kc_ C:323-339,513-537,548-554 1juj d1jujd_ D:28-44,218-242,253-259 1juj d1juja_ A:28-44,218-242,253-259 1juj d1jujc_ C:28-44,218-242,253-259 1ajm d1ajma_ A:1-15,169-193,194-205 2oip d2oipe2 E:235-251,426-450,461-467 1juj d1jujb_ B:28-44,218-242,253-259 1evg d1evga_ A:1-15,169-193,194-205 2oip d2oipd2 D:235-251,426-450,461-467 1tlc d1tlca_ A:1-15,169-193,194-205 1kzi d1kzib_ B:1-15,169-193,194-205 2a9w d2a9wb1 B:1-15,169-193,194-205 1qzf d1qzfc2 C:235-251,426-450,461-467 1qzf d1qzfa2 A:235-251,426-450,461-467 1qzf d1qzfb2 B:235-251,426-450,461-467 1qzf d1qzfe2 E:235-251,426-450,461-467 1qzf d1qzfd2 D:235-251,426-450,461-467 1tlc d1tlcb_ B:1-15,169-193,194-205 2oip d2oipa2 A:235-251,426-450,461-467 1j3j d1j3jc_ C:323-339,513-537,548-554 1f4e d1f4ea_ A:1-15,169-193,194-205 2g8o d2g8ob1 B:1-15,169-193,194-205 1evf d1evfa_ A:1-15,169-193,194-205 1kzi d1kzia_ A:1-15,169-193,194-205 1qqq d1qqqa_ A:1-15,169-193,194-205 2oip d2oipb2 B:235-251,426-450,461-467 1f4d d1f4da_ A:1-15,169-193,194-205 1f4c d1f4cb_ B:1-15,169-193,194-205 1kzj d1kzjf_ F:1-15,169-193,194-205 1kzj d1kzjd_ D:1-15,169-193,194-205 1f4b d1f4ba_ A:1-15,169-193,194-205 1tsd d1tsdb_ B:1-15,169-193,194-205 1f4c d1f4ca_ A:1-15,169-193,194-205 1tls d1tlsa_ A:1-15,169-193,194-205 1f4f d1f4fa_ A:1-15,169-193,194-205 1ev5 d1ev5a_ A:1-15,169-193,194-205 1f4d d1f4db_ B:1-15,169-193,194-205 1f4f d1f4fb_ B:1-15,169-193,194-205 1f28 d1f28a_ A:3-20,202-226,237-243 1jtu d1jtub_ B:1-15,169-193,194-205 1f28 d1f28c_ C:3-20,202-226,237-243 1kzj d1kzja_ A:1-15,169-193,194-205 2g8o d2g8oa1 A:1-15,169-193,194-205 2oip d2oipc2 C:235-251,426-450,461-467 1an5 d1an5a_ A:1-15,169-193,194-205 1tsn d1tsna_ A:1-15,169-193,194-205 1ffl d1ffla_ A:1-15,169-193,194-205 1aiq d1aiqb_ B:1-15,169-193,194-205 1nce d1nceb_ B:1-15,169-193,194-205 1f28 d1f28b_ B:3-20,202-226,237-243 2ftq d2ftqa1 A:1-15,169-193,194-205 1b02 d1b02a_ A:2-19,184-208,219-225 1bko d1bkod_ D:3-19,184-208,219-225 1f28 d1f28d_ D:3-20,202-226,237-243 1kzj d1kzjc_ C:1-15,169-193,194-205 1tsd d1tsda_ A:1-15,169-193,194-205 1jut d1juta_ A:1-15,169-193,194-205 1nce d1ncea_ A:1-15,169-193,194-205 1aiq d1aiqa_ A:1-15,169-193,194-205 1jg0 d1jg0b_ B:1-15,169-193,194-205 1tdu d1tdua_ A:1-15,169-193,194-205 1fwm d1fwmb_ B:301-315,469-493,494-505 1ddu d1ddub_ B:1-15,169-193,194-205 1fwm d1fwma_ A:1-15,169-193,194-205 2tsc d2tsca_ A:1-15,169-193,194-205 1syn d1syna_ A:1-15,169-193,194-205 1bjg d1bjga_ A:1-15,169-193,194-205 1jut d1jutb_ B:1-15,169-193,194-205 1kce d1kceb_ B:1-15,169-193,194-205 2kce d2kcea_ A:1-15,169-193,194-205 1bq1 d1bq1a_ A:1-15,169-193,194-205 1zpr d1zpra_ A:1-15,169-193,194-205 1kce d1kcea_ A:1-15,169-193,194-205 3tms d3tmsa_ A:1-15,169-193,194-205 1bdu d1bdua_ A:1-15,169-193,194-205 1tjs d1tjsa_ A:1-15,169-193,194-205 1f4g d1f4gb_ B:1-15,169-190,204-210 1bq2 d1bq2a_ A:1-15,169-193,194-205 1zpr d1zprb_ B:1-15,169-193,194-205 1trg d1trga_ A:1-15,169-193,194-205 1bid d1bida_ A:1-15,169-193,194-205 1dna d1dnaa_ A:1-15,169-193,194-205 2kce d2kceb_ B:1-15,169-193,194-205 1axw d1axwa_ A:1-15,169-193,194-205 1ddu d1ddua_ A:1-15,169-193,194-205 1jtu d1jtua_ A:1-15,169-193,194-205 1f4g d1f4ga_ A:1-15,169-190,204-210 1ci7 d1ci7b_ B:3-20,202-226,237-243 2bbq d2bbqa_ A:1-15,169-193,194-205 1tls d1tlsb_ B:1-15,169-193,194-205 1aob d1aoba_ A:1-15,169-193,194-205 1tys d1tysa_ A:1-15,169-193,194-205 1tdu d1tdub_ B:1-15,169-193,194-205 1ci7 d1ci7a_ A:3-20,202-226,237-243 1kzj d1kzje_ E:1-15,169-193,194-205 1axw d1axwb_ B:1-15,169-193,194-205 1jtq d1jtqa_ A:1-15,169-193,194-205 2tsc d2tscb_ B:1-15,169-193,194-205 1dna d1dnab_ B:1-15,169-193,194-205 1lce d1lcea_ A:1-18,221-245,256-262 1jtq d1jtqb_ B:1-15,169-193,194-205 1lce d1lcea_ A:1-18,221-245,246-257 1an5 d1an5b_ B:1-15,169-193,194-205 1syn d1synb_ B:1-15,169-193,194-205 2bbq d2bbqb_ B:1-15,169-193,194-205 1kzj d1kzjb_ B:1-15,169-193,204-210 1bq1 d1bq1b_ B:1-15,169-193,194-205 1tsd d1tsdb_ B:1-15,169-193,204-210 1jg0 d1jg0a_ A:1-15,169-193,204-210 1kzj d1kzjd_ D:1-15,169-193,204-210 3tms d3tmsa_ A:1-15,169-193,204-210 1kzi d1kzib_ B:1-15,169-193,204-210 2a9w d2a9wc1 C:1-15,169-193,204-210 1kzj d1kzja_ A:1-15,169-193,204-210 2a9w d2a9wa1 A:1-15,169-193,204-210 1tsn d1tsna_ A:1-15,169-193,204-210 2a9w d2a9wd1 D:1-15,169-193,204-210 1bq2 d1bq2a_ A:1-15,169-193,204-210 1ffl d1ffla_ A:1-15,169-193,204-210 1ajm d1ajma_ A:1-15,169-193,204-210 1tlc d1tlcb_ B:1-15,169-193,204-210 1tls d1tlsb_ B:1-15,169-193,204-210 1jtu d1jtub_ B:1-15,169-193,204-210 2tsc d2tscb_ B:1-15,169-193,204-210 2g8o d2g8ob1 B:1-15,169-193,204-210 1tjs d1tjsa_ A:1-15,169-193,204-210 1tls d1tlsa_ A:1-15,169-193,204-210 2a9w d2a9wb1 B:1-15,169-193,204-210 1kce d1kceb_ B:1-15,169-193,204-210 1kzj d1kzjf_ F:1-15,169-193,204-210 1f4d d1f4db_ B:1-15,169-193,204-210 1f4e d1f4ea_ A:1-15,169-193,204-210 1ddu d1ddub_ B:1-15,169-193,204-210 1qqq d1qqqa_ A:1-15,169-193,204-210 1jut d1jutb_ B:1-15,169-193,204-210 1tlc d1tlca_ A:1-15,169-193,204-210 1f4b d1f4ba_ A:1-15,169-193,204-210 1jtq d1jtqb_ B:1-15,169-193,204-210 1bid d1bida_ A:1-15,169-193,204-210 2ftq d2ftqa1 A:1-15,169-193,204-210 1evg d1evga_ A:1-15,169-193,204-210 1trg d1trga_ A:1-15,169-193,204-210 1f4c d1f4cb_ B:1-15,169-193,204-210 1kzi d1kzia_ A:1-15,169-193,204-210 1dna d1dnab_ B:1-15,169-193,204-210 1nce d1nceb_ B:1-15,169-193,204-210 1zpr d1zprb_ B:1-15,169-193,204-210 1evf d1evfa_ A:1-15,169-193,204-210 1jg0 d1jg0b_ B:1-15,169-193,204-210 1axw d1axwb_ B:1-15,169-193,204-210 1bjg d1bjga_ A:1-15,169-193,204-210 1aiq d1aiqb_ B:1-15,169-193,204-210 1kzj d1kzjc_ C:1-15,169-193,204-210 1kzj d1kzje_ E:1-15,169-193,204-210 1kce d1kcea_ A:1-15,169-193,204-210 1jut d1juta_ A:1-15,169-193,204-210 1tys d1tysa_ A:1-15,169-193,204-210 2g8o d2g8oa1 A:1-15,169-193,204-210 1f4d d1f4da_ A:1-15,169-193,204-210 1aiq d1aiqa_ A:1-15,169-193,204-210 1aob d1aoba_ A:1-15,169-193,204-210 1ev5 d1ev5a_ A:1-15,169-193,204-210 1an5 d1an5b_ B:1-15,169-193,204-210 1fwm d1fwmb_ B:301-315,469-493,504-510 2bbq d2bbqa_ A:1-15,169-193,204-210 1tsd d1tsda_ A:1-15,169-193,204-210 2kce d2kceb_ B:1-15,169-193,204-210 1f4f d1f4fb_ B:1-15,169-193,204-210 1bdu d1bdua_ A:1-15,169-193,204-210 1an5 d1an5a_ A:1-15,169-193,204-210 2kce d2kcea_ A:1-15,169-193,204-210 1f4f d1f4fa_ A:1-15,169-193,204-210 1axw d1axwa_ A:1-15,169-193,204-210 1f4c d1f4ca_ A:1-15,169-193,204-210 1nce d1ncea_ A:1-15,169-193,204-210 1fwm d1fwma_ A:1-15,169-193,204-210 1dna d1dnaa_ A:1-15,169-193,204-210 1jtq d1jtqa_ A:1-15,169-193,204-210 2tsc d2tsca_ A:1-15,169-193,204-210 1tdu d1tdua_ A:1-15,169-193,204-210 1tdu d1tdub_ B:1-15,169-193,204-210 1bq1 d1bq1b_ B:1-15,169-193,204-210 1jtu d1jtua_ A:1-15,169-193,204-210 1syn d1synb_ B:1-15,169-193,204-210 2bbq d2bbqb_ B:1-15,169-193,204-210 1bq1 d1bq1a_ A:1-15,169-193,204-210 1zpr d1zpra_ A:1-15,169-193,204-210 1ddu d1ddua_ A:1-15,169-193,204-210 1syn d1syna_ A:1-15,169-193,204-210 1ev8 d1ev8a_ A:1-15,169-193,204-210 1tis d1tisa_ A:1-15,179-203,214-220 283. g.78.1 YAP1 redox domain YAP1 redox domain bipartite cysteine-rich all-alpha domain; a single helix in the N-terminal part (chain A) is linked by disulfides to the C-terminal part (chain B) [3-helical bundle of the RuvA C-terminal domain-like fold (scop_cf 46928) 1sse d1sse.1 B:597-609,615-627,633-638 284. d.259.1 Hypothetical protein HI1480 Hypothetical protein HI1480 beta-alpha(4)-beta-alpha-beta; segregated alpha-helical and beta-sheet subdomains; dimeric beta-sheet barrel: n=6, S=10 1mw5 d1mw5b_ B:19-38,99-113,121-129 1mw5 d1mw5a_ A:19-38,99-113,121-129 286. a.127.1 L-aspartase-like L-aspartase-like multihelical, consists of three all-alpha domains 1kq7 d1kq7a_ A:159-179,196-224,390-394 1fuq d1fuqb_ B:159-179,196-224,390-394 1w27 d1w27a_ A:152-170,251-261,384-389 1kq7 d1kq7b_ B:159-179,196-225,390-394 1fup d1fupa_ A:159-179,196-225,390-394 1w27 d1w27b_ B:152-170,251-261,384-389 1fuo d1fuoa_ A:159-179,196-225,390-394 2fus d2fusa_ A:159-179,196-225,390-394 2fus d2fusb_ B:159-179,196-225,390-394 1fur d1fura_ A:159-179,196-225,390-394 1fuo d1fuob_ B:159-179,196-225,390-394 1fuq d1fuqa_ A:159-179,196-225,390-394 1fup d1fupb_ B:159-179,196-225,390-394 1fur d1furb_ B:159-179,196-225,390-394 1t6p d1t6pg_ G:161-179,261-270,397-403 1t6p d1t6pf_ F:161-179,261-271,397-403 1t6p d1t6pa_ A:161-179,261-271,397-403 1gk2 d1gk2c_ C:92-110,186-196,313-319 1t6p d1t6pe_ E:161-179,261-271,397-403 1t6p d1t6pd_ D:161-179,261-271,397-403 1t6p d1t6pb_ B:161-179,261-271,397-403 1gk2 d1gk2d_ D:92-110,186-196,313-319 1gk2 d1gk2b_ B:92-110,186-196,313-319 1gk2 d1gk2a_ A:92-110,186-196,313-319 1t6p d1t6ph_ H:161-179,261-271,398-403 1eb4 d1eb4a_ A:92-110,186-196,313-319 1t6j d1t6jb_ B:161-179,263-271,397-403 1gk3 d1gk3a_ A:92-110,186-196,313-319 1b8f d1b8fa_ A:92-110,186-196,313-319 1t6p d1t6pc_ C:161-179,261-270,398-403 1t6j d1t6ja_ A:161-179,263-271,397-403 1gkj d1gkja_ A:92-110,186-196,313-319 1gkm d1gkma_ A:92-110,186-196,313-319 1vdk d1vdkb_ B:139-182,196-224,390-394 1vdk d1vdka_ A:139-182,196-224,390-394 1yfe d1yfea1 A:139-182,196-225,390-394 1c3c d1c3cb_ B:93-132,149-177,333-337 1c3c d1c3ca_ A:93-132,149-177,333-337 1c3u d1c3ub_ B:93-132,149-177,333-337 1c3u d1c3ua_ A:93-132,149-177,333-337 1q5n d1q5na_ A:106-145,162-190,348-352 1jsw d1jswa_ A:143-184,199-227,393-397 1jsw d1jswc_ C:143-181,199-227,393-397 1yfm d1yfma_ A:164-207,221-249,415-419 1re5 d1re5b_ B:105-144,161-189,347-351 1re5 d1re5a_ A:105-144,161-189,347-351 1jsw d1jswb_ B:143-182,199-228,393-397 1re5 d1re5c_ C:105-144,161-189,347-351 1j3u d1j3ub_ B:140-179,196-224,390-394 1j3u d1j3ua_ A:140-179,196-224,390-394 1tj7 d1tj7b_ B:108-147,164-192,348-352 1tj7 d1tj7a_ A:108-147,164-192,348-352 287. d.17.7 Putative dsDNA mimic elaborated with additional structures; some similarity to Uracil-DNA glycosylase (UGI) and Nuclease A (NuiA) inhibitors ! Cystatin-like Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet 1nnv d1nnva_ A:9-26,30-41,100-106 289. a.117.1 Ras GEF Ras GEF multihelical 1nvw d1nvws_ S:605-615,620-636,952-958 1nvu d1nvus_ S:605-615,620-636,952-958 1nvv d1nvvs_ S:605-615,620-636,952-958 1nvx d1nvxs_ S:605-615,620-636,952-958 1bkd d1bkds_ S:605-615,620-636,952-958 1xd4 d1xd4b2 B:605-615,620-636,952-958 1xd2 d1xd2c_ C:605-615,620-636,952-957 291. d.302.1 Coronavirus NSP8-like Coronavirus NSP8-like core: alpha-beta(2)-alpha-beta(4)-alpha-beta; bifurcated barrel-like beta-sheet 2ahm d2ahmg1 G:139-147,178-186,187-196 2ahm d2ahme1 E:139-147,178-186,187-196 294. a.296.1 PMT central region-like PMT central region-like multihelical; comprises two four-helical bundles of different topologies and an irregular helical array packed against a small beta-sheet 2ec5 d2ec5a1 A:708-720,851-873,1053-1058 2ec5 d2ec5b1 B:708-720,851-873,1053-1058 2ebf d2ebfx1 X:708-720,850-873,1053-1058 2ebh d2ebhx1 X:708-720,850-873,1053-1058 301. c.1.3 Thiamin phosphate synthase TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 1g69 d1g69a_ A:18-27,190-201,203-208 1g67 d1g67a_ A:18-27,190-201,203-208 1g4s d1g4sa_ A:18-27,190-201,203-208 1g6c d1g6ca_ A:18-27,190-201,203-208 1g4e d1g4eb_ B:1018-1027,1190-1201,1203-1208 1g69 d1g69b_ B:1018-1027,1190-1201,1203-1208 1g4e d1g4ea_ A:18-27,190-201,203-208 1g4t d1g4ta_ A:18-27,190-201,203-208 1g4p d1g4pb_ B:1018-1027,1190-1201,1203-1208 1g4p d1g4pa_ A:18-27,190-201,203-208 2tps d2tpsb_ B:18-27,190-201,203-208 1g4s d1g4sb_ B:1018-1027,1190-1201,1203-1208 1g6c d1g6cb_ B:1018-1027,1190-1201,1203-1208 2tps d2tpsa_ A:18-27,190-201,203-208 1g67 d1g67b_ B:1018-1027,1190-1201,1203-1208 1g4t d1g4tb_ B:1018-1027,1190-1201,1203-1208 309. a.118.4 Lipovitellin-phosvitin complex, superhelical domain alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix 1lsh d1lsha1 A:576-593,595-610,623-635 1lsh d1lsha1 A:301-318,354-369,814-837 312. c.119.1 DAK1/DegV-like domain folds and architecture show some similarity to the tubulin-like GTPases; the nucleotide-binding sites of the Dihydroxyacetone kinase and tubulin families are different ! DAK1/DegV-like 2 different domains; d1: [core: 3 layers, a/b/a; parallel sheet of 5 strands, order: 2134]; D2: [2 layers, a/b; mixed sheet of 6 strands, order 321645; strands 2 and 6 are antiparallel to the rest] 1oi3 d1oi3a_ A:159-177,179-194,338-347 1uod d1uoda_ A:159-177,179-194,338-347 1oi2 d1oi2a_ A:159-177,179-194,338-347 1uoe d1uoea_ A:159-177,179-194,338-347 1oi3 d1oi3b_ B:159-177,179-194,338-347 1uod d1uodb_ B:159-177,179-194,338-347 1uoe d1uoeb_ B:159-177,179-194,338-347 1oi2 d1oi2b_ B:159-177,179-194,338-347 1vpv d1vpva_ A:121-139,141-156,275-287 1vpv d1vpvb_ B:121-139,141-156,275-287 1un8 d1un8a4 A:151-169,171-186,301-310 1un8 d1un8b4 B:151-169,171-186,301-310 1un9 d1un9a4 A:151-169,171-186,301-310 1un9 d1un9b4 B:151-169,171-186,301-310 1mgp d1mgpa_ A:146-164,166-181,300-309 320. e.75.1 flu NP-like Flu NP-like consists of alpha+beta and all-alpha domains; biological unit is a trimer 2iqh d2iqhb1 B:21-48,56-72,92-101 2iqh d2iqhc1 C:21-48,56-72,92-101 2iqh d2iqha1 A:21-48,56-72,92-101 321. a.2.1 GreA transcript cleavage protein, N-terminal domain Long alpha-hairpin 2 helices; antiparallel hairpin, left-handed twist 2etn d2etna1 A:8-40,44-72,87-95 2etn d2etnb1 B:8-40,46-72,87-95 2etn d2etnc1 C:8-40,45-72,87-95 2f23 d2f23b1 B:8-40,44-72,86-95 2f23 d2f23a1 A:8-39,44-72,86-95 2eul d2eula1 A:8-41,45-72,86-95 2eul d2eulc1 C:8-41,45-72,86-95 2eul d2eulb1 B:8-41,45-72,86-95 2eul d2euld1 D:8-41,45-72,86-95