| SCOP superfamily ID |
superfamiily description |
corresponding fold description |
| e.51.1 | Urocanase | Urocanase 3 domains; d1: alpha+beta [alpha(2)-beta(3); mixed sheet: 213]; d2: alpha/beta of the NAD(P)-binding Rossmann-fold superfamily (scop_sf 51735, most similar to scop_fa 51883 and scop_fa 51736); d3: alpha+beta of the glutamine synthetase/guanido kinase fold (scop_cf 55930); d1 and d3 form a single beta-sheet |
| d.142.1 | Glutathione synthetase ATP-binding domain-like | ATP-grasp Consists of two subdomains with different alpha+beta folds ! shares functional and structural similarities with the PIPK and protein kinase superfamilies |
| d.264.1 | Prim-pol domain | Prim-pol domain consists of two alpha+beta domains |
| d.161.1 | ADC synthase the active site is formed by additional structures inserted into the core structure ! | ADC synthase duplication: contains four repeats of alpha-beta(2)-beta motif arranged in a 4 layer core structure: alpha/beta/beta/alpha; orthogonally packed beta-sheets |
| e.15.1 | Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment | Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 2 domains: alpha+beta and all-beta |
| d.131.1 | DNA clamp | DNA clamp contains two helices and two beta sheets ! duplication: fold has internal pseudo two-fold symmetry |
| d.240.1 | Lesion bypass DNA polymerase (Y-family), little finger domain | Lesion bypass DNA polymerase (Y-family), little finger domain beta-alpha-beta(2)-alpha-beta; antiparallel beta-sheet: order 1423; "reversed" ferredoxin-like topology |
| d.311.1 | ImmE5-like | ImmE5-like alpha-beta(2)-alpha-beta; 2 layers, a/b; antiparallel beta-sheet, order 213 |
| c.7.1 | PFL-like glycyl radical enzymes duplication: the N- and C-terminal halves have similar topologies ! | PFL-like glycyl radical enzymes contains: barrel, closed; n=10, S=10; accommodates a hairpin loop inside the barrel |
| d.345.1 | NRDP1 C-terminal domain-like | NRDP1 C-terminal domain-like alpha-beta-alpha(3)-beta(3); a pseudo barrel beta-sheet of an SH3-like topology, surrounded by helices |
| d.58.62 | Ribosomal protein L10-like consists of globular N-terminal domain, structurally similar to NDK, and the L7/L12-binding C-terminal alpha-helical tail | Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 |
| d.115.1 | YrdC/RibB | YrdC/RibB core: alpha-beta(2)-alpha-beta-alpha(2)-beta(2)-alpha-beta-alpha-beta; 3 layers; mixed twisted sheet of 7 strands; order 7126354; strands 7 and 1 are parallel to each other |
| d.220.1 | Metal cation-transporting ATPase, ATP-binding domain N | Metal cation-transporting ATPase, ATP-binding domain N unusual fold; core: beta-alpha(2)-beta(3)-alpha(2)-beta(2); 6-stranded antiparallel beta-sheet, order: 165432 |
| d.58.26 | GHMP Kinase, C-terminal domain common fold is elaborated with additional secondary structures ! | Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 |
| d.45.1 | ClpS-like | ClpS-like beta-alpha(2)-beta-alpha-beta; 2 layers, alpha/beta |
| d.280.1 | Sulfolobus fructose-1,6-bisphosphatase-like | Sulfolobus fructose-1,6-bisphosphatase-like 4 layers: a/b/b/a; antiparallel beta sheets; similarities to ferredoxin-like fold (scop_cf 54861) in the N-terminal part (1-120) and to the Bacterial S-adenosylmethionine decarboxylase subunit (scop_fa 997656) in the C-terminal part (121-340) |
| e.18.1 | HydB/Nqo4-like | HydB/Nqo4-like 3 domains: (1) all-alpha; (2&3) alpha+beta |
| d.198.4 | YdhG-like some similarity to YjbR-like (scop_sf 136320) | Secretion chaperone-like alpha-beta(3)-alpha-beta(2)-alpha; 2 layers: alpha/beta |
| d.282.1 | SSo0622-like the dimer, formed in the crystals, is a probable biological unit ! | SSo0622-like alpha(2)-beta(2)-alpha-beta-alpha-beta(2)-alpha; 2 layers: a/b; antiparallel beta-sheet: order 21354; strands 1,3 and 5 and the C-terminal helix are longer than other secondary structures |
| d.193.1 | Hsp33 domain | Hsp33 domain 3 layers: beta/alpha/beta; buried helix |
| d.90.1 | FMN-dependent nitroreductase-like | FMN-dependent nitroreductase-like core: (alpha-beta-alpha-beta)2; 3 layers a/b/a; antiparallel beta-sheet: 1243 |
| d.144.1 | Protein kinase-like (PK-like) shares functional and structural similarities with the ATP-grasp fold and PIPK ! | Protein kinase-like (PK-like) consists of two alpha+beta domains, C-terminal domain is mostly alpha helical |
| e.1.1 | Serpins | Serpins contains a cluster of helices and a beta-sandwich |
| d.133.1 | Molybdenum cofactor-binding domain duplication: consists of 4 structural repeats arranged in 2 lobes ! contains one left-hand beta-alpha-beta unit per lobe ! | Molybdenum cofactor-binding domain beta(2)-alpha-beta-alpha-beta; 2 layers: a/b; mixed sheet: order 1243: crossing loops |
| d.211.2 | Plakin repeat repeats associate forming globular subdomains ! | beta-hairpin-alpha-hairpin repeat multiple repeats of beta(2)-alpha(2) motif |
| d.346.1 | SARS Nsp1-like | SARS Nsp1-like complex alpha+beta fold; contains mixed beta-sheet barrel, n=6, S=10 |
| e.53.1 | QueA-like | QueA-like 2 domains; d1 (1-64,174-335) [alpha/beta; 3 layers, a/b/a; mixed beta sheet of 9 strands, order: 219863457; strands 1, 5 and 8 are antiparallel to the rest]; d2 (65-142) [all-beta; barrel, closed (n=6, S=10); greek-key; topologically similar to the split barrel fold (scop_cf 50474) |
| c.117.1 | Amidase signature (AS) enzymes | Amidase signature (AS) enzymes possible duplication: the topologies of N- and C-terminal halves are similar; 3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213549A867 (A=10); strands from 5 to 9 are antiparallel to the rest |
| d.91.1 | N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 | N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 alpha-beta-alpha(2)-beta(3)-alpha; 3 layers a/b/a; antiparallel beta-sheet: 4123 |
| a.129.1 | GroEL equatorial domain-like duplication: two 4-helical subdomains are related by a pseudo dyad passing through the ATP-binding site ! | GroEL equatorial domain-like multihelical; 8 helices arranged in 2 parallel layers |
| c.83.1 | Aconitase iron-sulfur domain | Aconitase iron-sulfur domain consists of three similar domains with 3 layers (a/b/a) each; duplication ! core: parallel beta-sheet of 5 strands, order 32145 |
| d.112.1 | Phoshotransferase/anion transport protein | Phoshotransferase/anion transport protein beta-alpha(2)-beta(3)-alpha(3); 3 layers, alpha/beta/alpha; mixed sheet: order 1342; loop crossing |
| d.150.1 | 4'-phosphopantetheinyl transferase possibly related to the IspF ( | 4'-phosphopantetheinyl transferase beta-alpha(3)-beta(2) motif |
| c.52.4 | TBP-interacting protein-like contains extra C-terminal alpha+beta domain of complex fold with an embeded C2H2 zinc-finger | Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest |
| c.73.1 | Carbamate kinase-like the sheet topology is similar to those of undecaprenyl diphosphate synthase and the N-terminal domain of phosphoglycerate kinase ! | Carbamate kinase-like 3 layers: a/b/a; mixed (mainly parallel) beta-sheet of 8 strands, order 34215786; strand 8 is antiparallel to the rest |
| d.47.1 | Ribosomal L11/L12e N-terminal domain | Ribosomal L11/L12e N-terminal domain beta-alpha(2)-beta(2); 2 layers, alpha/beta; antiparallel beta-sheet: order 123 |
| b.118.1 | FAS1 domain | FAS1 domain core: barrel, closed; n=7, S=12; meander |
| e.29.1 | beta and beta-prime subunits of DNA dependent RNA-polymerase The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit ! | beta and beta-prime subunits of DNA dependent RNA-polymerase Multidomain subunits of complex domain organization |
| d.229.1 | MesJ substrate recognition domain-like | MesJ substrate recognition domain-like beta-alpha(2)-beta(3); 2 layers: a/b; antiparallel beta-sheet, order:1432 |
| d.55.1 | Ribosomal protein L22 some topological similarity to prokaryotic ribosomal protein L17 ! | Ribosomal protein L22 beta-alpha(3)-beta(2); 2 layers: alpha/beta; related to the enolase/MLE N-domain fold by a circular permutation |
| d.370.1 | BTG domain-like | BTG domain-like alpha(2)-beta-alpha(2)-beta(3); four-helical bundle, capped at one end by an antiparallel beta-sheet, order:1234 |
| d.294.1 | EndoU-like similarity to the RNase A-like superfamily ( | EndoU-like comprises several helices and two three-stranded antiparallel beta-sheets; similar architecture to the RNase A-like fold (scop_cf 54075) |
| g.52.1 | Inhibitor of apoptosis (IAP) repeat | Inhibitor of apoptosis (IAP) repeat metal(zinc)-bound alpha+beta fold |
| d.298.1 | RelE-like Toxin component of plasmid stabilisation system ! | RelE-like beta-alpha(2)-beta(4), 2 layers; a/b, antiparallel beta-sheet; order 15432 |
| e.50.1 | AF1104-like | AF1104-like 2 domains; d1: [all-alpha; 3-helical bundle, similar to the immunoglobulin/albumin-binding domain-like fold (scop_cf 46996)]; d2: [alpha/beta; 3 layers, a/b/a; 6-stranded mixed beta-sheet, order: 321456, strand 6 is antiparallel to the rest] |
| d.58.32 | FAD-linked oxidases, C-terminal domain duplication: contains two subdomains of this fold ! | Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 |
| d.313.1 | Prenyltransferase-like the barrel channel harbours the substrate-binding site ! | Antiparallel beta/alpha barrel (PT-barrel) tandem repeat of five alpha(2)-beta(2) motifs; antiparallel beta-sheet barrel, closed; n=10, S=10; order 123456789A; there is a channel along the barrel axis |
| d.328.1 | CorA soluble domain-like | CorA soluble domain-like beta(2)-alpha-beta-alpha(2)-beta(4)-alpha(3); 3 layers: a/b/a; mixed beta-sheet, order 2137654; strands 3 and 7 are parallel |
| d.73.1 | RuBisCO, small subunit | RuBisCO, small subunit alpha-beta(2)-alpha-beta(2); 2 layers, alpha/beta |
| c.152.1 | CbiG N-terminal domain-like probable biological unit is a homodimer; putative active site is formed by residues from both subunits | CbiG N-terminal domain-like 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 213456, strand 5 is antiparallel to the rest |
| d.29.1 | Ribosomal protein L31e | Ribosomal protein L31e beta-alpha-beta-(alpha)-beta(2); 2 layers: alpha/beta; mixed beta-sheet, order: 1342 |
| c.90.1 | Tetrapyrrole methylase | Tetrapyrrole methylase consists of two non-similar domains ! Domain 1 has parallel sheet of 5 strands, order 32415 ! Domain 2 has mixed sheet of 5 strands, order 12534; strands 4 & 5 are antiparallel to the rest |
| d.67.2 | Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain | RRF/tRNA synthetase additional domain-like core: alpha-beta(2)-alpha-beta(2); 2 layers: alpha/beta |
| d.143.1 | SAICAR synthase-like shares functional and structural similarities with the ATP-grasp fold and protein kinase superfamilies ! | SAICAR synthase-like consists of two alpha+beta subdomains |
| a.160.1 | PAP/OAS1 substrate-binding domain this domain follows the catalytic nucleotidyltransferase domain ! | PAP/OAS1 substrate-binding domain core: 5-helical bundle; up-and-down; right-handed twist |
| d.275.1 | Hut operon positive regulatory protein HutP | Hut operon positive regulatory protein HutP alpha(2)-beta-alpha(2)-beta(3); 3 layers: a/b/a; antiparallel beta-sheet: order 1234 |
| e.6.1 | Acyl-CoA dehydrogenase NM domain-like flavoprotein: binds FAD; constituent families differ in the numbers of C-terminal domains (four-helical bundles) ! | Acyl-CoA dehydrogenase NM domain-like 2 domains: (1) all-alpha: 5 helices; (2) contains an open beta-sheet barrel: n*=5, S*=8; complex topology |
| a.209.1 | ADP-ribosylglycohydrolase | ADP-ribosylglycohydrolase multihelical; bundle |
| e.55.1 | Rap/Ran-GAP | Rap/Ran-GAP consists of two domains; d1: alpha+beta (78-190; alpha-beta(4)-alpha-beta-alpha; 3 layers; antiparallel beta-sheet of 5 strands; order 51234); d2: alpha/beta similar to the G-domain fold (191-381; scop_fa 52592) |
| d.56.1 | GroEL-intermediate domain like | GroEL-intermediate domain like 3-helical bundle packed against 3-stranded mixed beta-sheet |
| d.340.1 | CofE-like | CofE-like consists of two different domains; d1: beta-alpha-beta-alpha-beta(2)-alpha-beta, mixed sheet of 5 strands, order:15234, strands 2 and 3 are parralel; d2 is inserted in d1 after strand 2 and comprises a helix-turn-helix motif and two 3-stranded sheets |
| e.41.1 | Adenylylcyclase toxin (the edema factor) Domain 1 has topological and active site similarity to the Nucleotidyltransferases (eg. 1kny N-domain); domain 3 binds calmodulin ! | Adenylylcyclase toxin (the edema factor) 3 domains: (1&2) alpha+beta, with domain 2 being inserted in domain 1; (3) all-alpha |
| d.296.1 | YktB/PF0168-like | YktB/PF0168-like alpha-beta(4)-alpha-beta(2)-alpha-beta-alpha; 2 layers, a/b; antiparallel beta-sheet, order: 1234756; half-barrel shape; topological similarity to the MotA C-terminal domain-like fold (scop_cf 69651) and the Secretion chaperone-like fold (scop_cf 69634) |
| d.276.1 | Hypothetical protein yfbM | Hypothetical protein yfbM beta-alpha(2)-beta-alpha(2)-beta(2)-alpha(n)-beta; 3 layers: a/b/a; antiparallel beta-sheet, order: 21543 |
| d.197.1 | Protein-L-isoaspartyl O-methyltransferase, C-terminal domain | Protein-L-isoaspartyl O-methyltransferase, C-terminal domain beta-alpha-beta(4)-alpha-beta(2); 3 layers: beta/alpha/beta; buried helix |
| e.7.1 | Carbohydrate phosphatase | Carbohydrate phosphatase N-terminal domain is an alpha+beta, C-terminal domain is an alpha/beta with mixed beta-sheet |
| f.1.5 | Exotoxin A, middle domain | Toxins' membrane translocation domains multi-helical domains of various folds which is thought to unfold in the membrane |
| c.56.1 | HybD-like the HybD fold coincides with the consensus core structure ! | Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops |
| d.36.1 | Chalcone isomerase | Chalcone isomerase beta(3)-alpha(2)-beta-alpha(2)-beta3; 2 layers alpha/beta; antiparallel sheet: order 1234567 |
| e.24.1 | Ribosomal protein L1 | Ribosomal protein L1 2 domains: (1) alpha+beta; (2) alpha/beta (interrupts domain 1) |
| e.2.1 | Replication terminator protein (Tus) | Replication terminator protein (Tus) contains a cluster of helices and a beta-sandwich |
| d.283.1 | Putative modulator of DNA gyrase, PmbA/TldD | Putative modulator of DNA gyrase, PmbA/TldD consists of two different alpha+beta domains; d1: [duplication of alpha-beta(3)-alpha motif; 2 layers: a/b; antiparallel beta-sheet, order: 321456; strands 1, 2, 4 and 5 are twice longer than other secondary structures]; d2 [ complex fold; contains beta-barrel (n=5, S=10)] |
| a.102.2 | Seven-hairpin glycosidases | alpha/alpha toroid multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies |
| e.72.1 | SSO1389-like | SSO1389-like 2 domains; d1: [alpha/beta, central parallel beta-sheet of 6 strands, order 321456, Rossmann-like]; d2: [alpha+beta, cluster of helices and a small 4-stranded beta-sheet] |
| d.58.47 | Hypothetical protein VC0424 | Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 |
| c.111.1 | Activating enzymes of the ubiquitin-like proteins transfer adenylyl group to the C-terminal carboxyl group of the ubiquitin and MoaD/ThiS-related proteins ! the ATP nucleotide-binding site is similar to that of the NAD-binding Rossmann-folds ! | Activating enzymes of the ubiquitin-like proteins 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 32145678; strands 6 and 8 are antiparallel to the rest |
| e.48.1 | Major capsid protein VP5 | Major capsid protein VP5 large protein without apparent domain division |
| d.310.1 | VC0467-like | VC0467-like complex fold; contains bifurcated beta-sheet structure folded into pseudo barrel |
| d.142.2 | DNA ligase/mRNA capping enzyme, catalytic domain has a circularly permuted topology ! | ATP-grasp Consists of two subdomains with different alpha+beta folds ! shares functional and structural similarities with the PIPK and protein kinase superfamilies |
| d.123.1 | Sporulation response regulatory protein Spo0B Histidine kinase-like fold lacking the kinase ATP-binding site ! | Sporulation response regulatory protein Spo0B core: alpha-beta-alpha-beta(2)-(alpha)-beta(2) |
| c.32.1 | Tubulin nucleotide-binding domain-like | Tubulin nucleotide-binding domain-like 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456 |
| c.70.1 | Nucleoside hydrolase | Nucleoside hydrolase core: 3 layers, a/b/a ; mixed beta-sheet of 8 strands, order 32145687; strand 7 is antiparallel to the rest |
| g.90.1 | E6 C-terminal domain-like | E6 C-terminal domain-like alpha+beta zinc-binding fold with topological similarity to the fold of lambda cro protein |
| e.28.1 | Reovirus inner layer core protein p3 | Reovirus inner layer core protein p3 large protein without apparent domain division; has a number of all-alpha regions and one all beta domain near the C-end |
| d.135.1 | The spindle assembly checkpoint protein mad2 N- and C-termini undergo large conformational rearrangement upon ligand binding ! | The spindle assembly checkpoint protein mad2 core: alpha(2)-beta(2)-alpha-beta; mixed sheet: order 213 |
| d.248.1 | Coproporphyrinogen III oxidase | Coproporphyrinogen III oxidase alpha-beta(6)-alpha(2)-beta-alpha(n); 3 layers alpha/beta/alpha; antiparallel sheet: order 1234567 |
| c.150.1 | EreA/ChaN-like there are four conserved residues in the putative active site: two His and two Glu | EreA/ChaN-like Core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order:51423; |
| d.103.1 | CytB endotoxin-like | CytB endotoxin-like core: beta-alpha(2)-beta-alpha(2)-beta(4); 3 layers: a/b/a |
| d.7.1 | LysM domain | LysM domain beta-alpha(2)-beta; antiparallel strands |
| e.13.1 | DNA primase core | DNA primase core 2 domains: (1) alpha+beta; (2) toprim alpha/beta |
| d.178.1 | Aromatic aminoacid monoxygenases, catalytic and oligomerization domains | Aromatic aminoacid monoxygenases, catalytic and oligomerization domains unusual fold |
| d.179.1 | Substrate-binding domain of HMG-CoA reductase | Substrate-binding domain of HMG-CoA reductase unusual fold |
| d.261.1 | Hypothetical protein PH1602 | Hypothetical protein PH1602 complex alpha+beta fold; contains a region of similarity to the ferredoxin-like fold |
| e.17.1 | D-aminoacid aminotransferase-like PLP-dependent enzymes | D-aminoacid aminotransferase-like PLP-dependent enzymes 2 domains: (1) alpha+beta: beta3-alpha2-beta2; (2) alpha/beta, a part of its mixed sheet forms barrel: n=6, S=8 |
| d.213.1 | VSV matrix protein | VSV matrix protein beta-alpha(2)-beta(4)-alpha-beta(2); two layers: alpha/beta; bifurcated coiled beta-sheet: order of the first 5 strands: 23154 |
| d.110.10 | YNR034W-A-like | Profilin-like core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha |
| d.163.1 | DNA breaking-rejoining enzymes | DNA breaking-rejoining enzymes core: alpha3-beta3-alpha4; one side of beta-sheet is exposed |
| d.309.1 | AMMECR1-like | AMMECR1-like duplication; contains two beta(2)-alpha-beta(2) structural repeats, swapped with C-terminal strands; extra N-terminal helix and C-terminal strand |
| b.23.3 | Acetamidase/Formamidase-like decorated fold with additional structures; contains extra C-terminal alpha+beta subdomain: beta(2)-alpha(2)-beta(2): antiparallel beta-sheet, order 1243 ! | CUB-like sandwich, 10 strands in 2 sheets; jelly-roll |
| b.8.1 | TRAF domain-like has a circularly permuted immunoglobulin-fold topology with extra strand ! | TRAF domain-like sandwich; 8 strands in 2 sheets; greek-key |
| d.335.1 | L,D-transpeptidase pre-catalytic domain-like | L,D-transpeptidase pre-catalytic domain-like unusual fold, made of four helices and four 2-3 stranded beta-sheets |
| d.320.1 | YojJ-like | YojJ-like alpha-beta-X-beta-alpha-beta(2)-alpha-beta(3); 3 layers: a/b/a; 7-stranded mixed beta-sheet, order 2431567; strands 1 and 3 are parallel to each other |
| e.44.1 | 2-methylcitrate dehydratase PrpD | 2-methylcitrate dehydratase PrpD consists of an all-alpha and alpha+beta domains |
| d.52.5 | Probable GTPase Der, C-terminal domain possible distant relative of the Era C-terminal domain lacking the KH motif ! | Alpha-lytic protease prodomain-like core: alpha-beta(2)-(alpha)-beta; 2 layers: alpha/beta |
| d.117.1 | Thymidylate synthase/dCMP hydroxymethylase | Thymidylate synthase/dCMP hydroxymethylase contains large mixed beta-sheet |
| g.78.1 | YAP1 redox domain | YAP1 redox domain bipartite cysteine-rich all-alpha domain; a single helix in the N-terminal part (chain A) is linked by disulfides to the C-terminal part (chain B) [3-helical bundle of the RuvA C-terminal domain-like fold (scop_cf 46928) |
| d.259.1 | Hypothetical protein HI1480 | Hypothetical protein HI1480 beta-alpha(4)-beta-alpha-beta; segregated alpha-helical and beta-sheet subdomains; dimeric beta-sheet barrel: n=6, S=10 |
| a.127.1 | L-aspartase-like | L-aspartase-like multihelical, consists of three all-alpha domains |
| d.17.7 | Putative dsDNA mimic elaborated with additional structures; some similarity to Uracil-DNA glycosylase (UGI) and Nuclease A (NuiA) inhibitors ! | Cystatin-like Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet |
| a.117.1 | Ras GEF | Ras GEF multihelical |
| d.302.1 | Coronavirus NSP8-like | Coronavirus NSP8-like core: alpha-beta(2)-alpha-beta(4)-alpha-beta; bifurcated barrel-like beta-sheet |
| a.296.1 | PMT central region-like | PMT central region-like multihelical; comprises two four-helical bundles of different topologies and an irregular helical array packed against a small beta-sheet |
| c.1.3 | Thiamin phosphate synthase | TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites |
| a.118.4 | Lipovitellin-phosvitin complex, superhelical domain | alpha-alpha superhelix multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix |
| c.119.1 | DAK1/DegV-like domain folds and architecture show some similarity to the tubulin-like GTPases; the nucleotide-binding sites of the Dihydroxyacetone kinase and tubulin families are different ! | DAK1/DegV-like 2 different domains; d1: [core: 3 layers, a/b/a; parallel sheet of 5 strands, order: 2134]; D2: [2 layers, a/b; mixed sheet of 6 strands, order 321645; strands 2 and 6 are antiparallel to the rest] |
| e.75.1 | flu NP-like | Flu NP-like consists of alpha+beta and all-alpha domains; biological unit is a trimer |
| a.2.1 | GreA transcript cleavage protein, N-terminal domain | Long alpha-hairpin 2 helices; antiparallel hairpin, left-handed twist |