1. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1e9b d1e9ba_ A:5-13,64-90,90-97,122-126
1nn5 d1nn5a_ A:5-13,64-90,90-97,122-126
1e99 d1e99a_ A:5-13,64-90,90-97,122-126
1nn3 d1nn3a_ A:5-13,64-90,90-97,122-126
1e2d d1e2da_ A:5-13,64-90,90-97,122-126
1nn1 d1nn1a_ A:5-13,64-90,90-97,122-126
1nmy d1nmya_ A:5-13,64-90,90-97,122-126
1e2q d1e2qa_ A:5-13,64-90,90-97,122-126
1e9a d1e9aa_ A:5-13,64-90,90-97,122-126
1e2g d1e2ga_ A:5-13,64-90,90-97,122-126
1e9e d1e9ea_ A:5-13,64-90,90-97,122-126
1e98 d1e98a_ A:5-13,64-90,90-97,122-126
1e2e d1e2ea_ A:5-13,64-90,90-97,122-126
1e2f d1e2fa_ A:5-13,64-90,90-97,122-126
1e9f d1e9fa_ A:5-13,64-90,90-97,122-126
1e9d d1e9da_ A:5-13,64-90,90-97,122-126
1nmz d1nmza_ A:5-13,64-90,90-97,122-126
1nn0 d1nn0a_ A:5-13,64-90,90-97,122-126
1nmx d1nmxa_ A:5-13,64-90,90-97,122-126
1e9c d1e9ca_ A:5-13,64-90,90-97,122-126
2. c.67.1 PLP-dependent transferases
PLP-dependent transferase-like main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
1ord d1ordb2 B:212-220,223-235,283-289,663-670
3. c.1.9 Metallo-dependent hydrolases the beta-sheet barrel is similarly distorted and capped by a C-terminal helix ! has transition metal ions bound inside the barrel !
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
2ftw d2ftwa2 A:62-68,81-93,320-328,400-408
1kcx d1kcxa2 A:69-75,88-100,327-335,407-414
1kcx d1kcxb2 B:69-75,88-100,327-335,407-415
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 125 (enumeration index: query103) of S4
2v54 B:3-11,60-86,86-93,117-121
2v54 A:3-11,60-86,86-93,117-121
3ble A:8-13,212-226,228-233,241-245
3cmg A:318-325,535-554,556-564,579-585
3ewb X:4-9,206-220,222-227,235-239
2wwh C:7-15,66-92,92-99,124-128
2wwh A:7-15,66-92,92-99,124-128
2osy A:56-61,360-376,377-384,407-414
2osy B:56-61,360-376,377-384,407-414
3izx C:1172-1180,1189-1196,1201-1209,1226-1233
3izx B:1172-1180,1189-1196,1201-1209,1229-1233
3lyc E:42-49,69-77,83-89,104-111
3lyc C:42-49,69-77,83-89,104-111
3lyc I:42-49,69-77,83-89,104-111
3lyc M:42-49,69-77,83-89,104-111
2f7l B:279-285,288-299,322-326,408-414
2oyk A:56-61,360-376,377-384,407-414
2oyk B:56-61,360-376,377-384,407-414
2gse C:69-75,88-100,328-335,407-415
2gse D:69-75,88-100,328-335,407-415
2gse A:69-75,88-100,328-335,407-415
2gse B:69-75,88-100,328-335,407-415
3pet A:45-51,72-80,86-92,104-111
3pet B:45-51,72-80,86-92,104-111
2w0s A:3-11,60-86,86-93,117-121
2w0s B:3-11,60-86,86-93,117-121
2vm8 D:69-75,88-100,328-335,407-415
2vm8 C:69-75,88-100,328-335,407-415
2vm8 A:69-75,88-100,327-335,407-415
2vm8 B:69-75,88-100,328-335,407-415
2oyl A:56-61,360-376,377-384,407-414
2oyl B:56-61,360-376,377-384,407-414
2vr2 A:63-69,82-94,321-328,401-409
2wwi A:7-15,66-92,92-99,124-128
2wwi C:7-15,66-92,92-99,124-128
2osw B:56-61,360-376,377-384,407-414
2osw A:56-61,360-376,377-384,407-414
2vyc I:246-252,255-266,315-320,700-707
2vyc C:246-252,255-266,315-320,700-707
2vyc F:246-252,255-266,315-320,700-707
2vyc H:246-252,255-266,315-320,700-707
2vyc E:246-252,255-266,315-320,700-707
2vyc B:246-252,255-266,315-320,700-707
2vyc D:246-252,255-266,315-320,702-707
2vyc A:246-252,255-266,315-320,700-707
2vyc G:246-252,255-266,315-320,700-707
2vyc J:246-252,255-266,315-320,700-707
2oym A:56-61,360-376,377-384,407-414
2oym B:56-61,360-376,377-384,407-414
3blf A:8-13,212-226,228-233,241-245
2osx A:56-61,360-376,377-384,407-414
3eeg B:5-10,207-221,223-228,236-240
3eeg A:5-10,207-221,223-228,236-240
3iz3 B:1172-1180,1189-1196,1201-1209,1229-1233
2wwg A:7-15,66-92,92-99,124-128
2wwg C:7-15,66-92,92-99,124-128