List of the counted superfamily hits for pattern ID: 143 (enumeration index: query105) of S4

List of the counted superfamily hits for pattern ID: 143 (enumeration index: query105) of S4

SCOP superfamily ID superfamiily description corresponding fold description
c.76.1Alkaline phosphatase-like Alkaline phosphatase-like core:3 layers: a/b/a; mixed beta-sheet of 8 strands, order 43516728, strand 7 is antiparallel to the rest
c.59.1MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 126345; strand 1 is antiparallel to the rest
c.1.8(Trans)glycosidases TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.1.10Aldolase Common fold covers whole protein structure ! TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.77.1Isocitrate/Isopropylmalate dehydrogenase-like the constituent families form similar dimers ! Isocitrate/Isopropylmalate dehydrogenase-like consists of two intertwined (sub)domains related by pseudo dyad; duplication ! 3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest
c.1.12Phosphoenolpyruvate/pyruvate domain TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.90.1Tetrapyrrole methylase Tetrapyrrole methylase consists of two non-similar domains ! Domain 1 has parallel sheet of 5 strands, order 32415 ! Domain 2 has mixed sheet of 5 strands, order 12534; strands 4 & 5 are antiparallel to the rest
c.6.2Glycoside hydrolase/deacetylase in the different families beta-barrels are similarly distorted but may vary in the number of strands ! 7-stranded beta/alpha barrel variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=7, S=8; strand order 1234567; some members may have fewer strands
c.1.27(2r)-phospho-3-sulfolactate synthase ComA TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.1.1Triosephosphate isomerase (TIM) TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.1.21Dihydropteroate synthetase-like TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.1.26Homocysteine S-methyltransferase TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.60.1Phosphoglycerate mutase-like Phosphoglycerate mutase-like core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 324156; strand 5 is antiparallel to the rest
c.1.25Monomethylamine methyltransferase MtmB TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.1.19Cobalamin (vitamin B12)-dependent enzymes TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.1.18PLC-like phosphodiesterases TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.112.1Glycerol-3-phosphate (1)-acyltransferase some topological similarity to the dihydrofolate reductase fold ! Glycerol-3-phosphate (1)-acyltransferase 3 layers: a/b/a; mixed beta-sheet of 9 strands, order 918736452; strands 1, 2 and 8 are antiparallel to the rest
c.1.7NAD(P)-linked oxidoreductase TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
d.185.1LuxS/MPP-like metallohydrolase Share the same "active site motif" HxxEH located in the first core helix, but differ in one of the zinc-binding residues ! LuxS/MPP-like metallohydrolase core: beta-alpha-beta(2)-alpha(2); 2 layers: alpha/beta
c.1.14RuBisCo, C-terminal domain TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.1.4FMN-linked oxidoreductases TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.50.1Macro domain-like Macro domain-like 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 165243, strand 3 is antiparallel to the rest
c.1.30CutC-like TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.1.2Ribulose-phoshate binding barrel TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.1.3Thiamin phosphate synthase TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.42.1Arginase/deacetylase Arginase/deacetylase 3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456
c.121.1Ribose/Galactose isomerase RpiB/AlsB Ribose/Galactose isomerase RpiB/AlsB 3 layers: a/b/a, core: parallel beta-sheet of 5 strands, order 21354; topological similarity to a part of the arginase/deacetylase fold
c.1.24Pyridoxine 5'-phosphate synthase TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.89.1Phosphofructokinase Phosphofructokinase consists of two non-similar domains, 3 layers (a/b/a) each ! Domain 1 has mixed sheet of 7 strands, order 3214567; strands 3 & 7 are antiparallel to the rest ! Domain 2 has parallel sheet of 4 strands, order 2314
c.116.1alpha/beta knot known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily ! all known members have dimeric structures ! alpha/beta knot core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
e.42.1L-A virus major coat protein L-A virus major coat protein large protein without apparent domain division
c.1.13Malate synthase G TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.1.5Inosine monophosphate dehydrogenase (IMPDH) The phosphate moiety of substrate binds in the 'common' phosphate-binding site ! TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.1.31ThiG-like shares the common phosphate-binding site with other superfamilies ! TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.148.1ComB-like ComB-like contains of two similar intertwined domains related by pseudo dyad; duplication; core: 3 layers: a/b/a; parallel beta-sheet of 4 strands, order 1423
c.38.1PTS IIb component PTS IIb component 3 layers: a/b/a, parallel beta-sheet of 6 strands, order 324156
c.150.1EreA/ChaN-like there are four conserved residues in the putative active site: two His and two GluEreA/ChaN-like Core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order:51423;
c.73.1Carbamate kinase-like the sheet topology is similar to those of undecaprenyl diphosphate synthase and the N-terminal domain of phosphoglycerate kinase ! Carbamate kinase-like 3 layers: a/b/a; mixed (mainly parallel) beta-sheet of 8 strands, order 34215786; strand 8 is antiparallel to the rest
c.1.16Bacterial luciferase-like consists of clearly related families of somewhat different folds ! TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.1.32TM1631-like TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
c.146.1YgbK-like YgbK-like consists of two domains with partial topological similarity to the P-loop kinases but without the P-loop motif; the domain association results in the formation of a single mixed beta-sheet of 15 strands
c.86.1Phosphoglycerate kinase Phosphoglycerate kinase consists of two non-similar domains, 3 layers (a/b/a) each ! Domain 1 has parallel beta-sheet of 6 strands, order 342156 ! Domain 2 has parallel beta-sheet of 6 strands, order 321456
e.51.1Urocanase Urocanase 3 domains; d1: alpha+beta [alpha(2)-beta(3); mixed sheet: 213]; d2: alpha/beta of the NAD(P)-binding Rossmann-fold superfamily (scop_sf 51735, most similar to scop_fa 51883 and scop_fa 51736); d3: alpha+beta of the glutamine synthetase/guanido kinase fold (scop_cf 55930); d1 and d3 form a single beta-sheet
c.56.6LigB-like circular permutation of the common fold, most similar to the PNP fold ! Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
c.138.1Indigoidine synthase A-like Indigoidine synthase A-like core: 3 layers, a/b/a; parallel beta-sheet of 7 strands, order 2134756
c.145.1NadA-like NadA-like duplication; consists of three similar domains related by pseudo threefold symmetry; 3 layers, a/b/a; parallel beta sheet, order: 2134