1. c.154.1 CdCA1 repeat-like CdCA1 repeat-like contains two parallel beta-strands of four strands each; the sheets contact each other with edges at a right angle 3boh d3boha1 A:15-27,161-169,196-212,215-222 3boh d3bohb1 B:15-27,161-169,196-212,215-222 3boj d3boja1 A:15-27,161-169,196-212,215-222 3boe d3boea1 A:225-237,371-379,406-422,425-432 3bob d3boba1 A:225-237,371-379,406-422,425-432 3boc d3boca1 A:225-237,371-379,406-422,425-432 2. c.36.1 Thiamin diphosphate-binding fold (THDP-binding) there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules ! two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules ! Thiamin diphosphate-binding fold (THDP-binding) 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465 1yhy d1yhya3 A:463-476,610-616,617-632,633-641 1yhz d1yhza3 A:463-476,610-616,617-632,633-641 1yi1 d1yi1a3 A:463-476,610-616,617-632,633-641 2ez8 d2ez8b3 B:372-384,512-517,518-536,536-544 1ybh d1ybha3 A:463-476,610-616,617-632,633-641 1yi0 d1yi0a3 A:463-476,610-616,617-632,633-641 2ez9 d2ez9a3 A:372-384,512-517,519-536,536-544 2ezu d2ezub3 B:372-384,512-517,519-536,536-544 2ez4 d2ez4b3 B:372-384,512-517,519-536,536-544 1z8n d1z8na3 A:463-476,611-616,617-632,633-641 2ez9 d2ez9b3 B:372-384,512-517,519-536,536-544 2ez4 d2ez4a3 A:372-384,512-517,519-536,536-544 2ezt d2ezta3 A:372-384,512-517,519-536,536-544 1t9b d1t9bb3 B:472-488,614-620,621-635,637-645 1pow d1powa3 A:372-384,512-517,519-536,536-544 2ezt d2eztb3 B:372-384,512-517,519-536,536-544 2ez8 d2ez8a3 A:372-384,512-517,519-536,536-544 2ezu d2ezua3 A:372-384,512-517,519-536,536-544 1pox d1poxa3 A:372-384,512-517,519-536,536-544 1pox d1poxb3 B:372-384,512-517,519-536,536-544 1upc d1upce3 E:383-400,528-533,535-550,551-559 1pow d1powb3 B:372-384,512-517,519-536,536-544 1n0h d1n0hb3 B:472-488,614-620,621-635,637-645 1t9a d1t9ab3 B:472-488,614-620,621-635,637-645 1t9c d1t9cb3 B:472-488,614-620,621-635,637-645 1t9b d1t9ba3 A:472-488,614-620,621-635,637-645 1t9c d1t9ca3 A:472-488,614-620,621-635,637-645 1upa d1upac3 C:383-400,528-533,535-550,551-559 1jsc d1jscb3 B:472-488,614-620,621-635,637-645 1zpd d1zpda3 A:366-378,506-513,514-529,530-539 1t9d d1t9da3 A:472-488,614-620,621-635,637-645 1t9d d1t9dc3 C:472-488,614-620,621-635,637-645 1n0h d1n0ha3 A:472-488,614-620,621-635,637-645 1t9a d1t9aa3 A:472-488,614-620,621-635,637-645 1zpd d1zpdf3 F:366-378,506-513,514-529,530-539 1upa d1upad3 D:383-400,528-533,535-550,551-559 1upb d1upbc3 C:383-400,528-533,535-550,551-559 2iht d2ihtc3 C:383-400,528-533,535-550,551-559 1jsc d1jsca3 A:472-488,614-620,621-635,637-645 2ihv d2ihvd3 D:383-400,528-533,535-550,551-559 1zpd d1zpdb3 B:366-378,506-513,514-529,530-539 2iht d2ihtd3 D:383-400,528-533,535-550,551-559 1upc d1upcc3 C:383-400,528-533,535-550,551-559 1zpd d1zpde3 E:366-378,506-513,514-529,530-539 1itz d1itzb2 B:367-384,500-505,508-523,525-532 1upc d1upcd3 D:383-400,528-533,535-550,551-559 1itz d1itzc2 C:367-384,500-505,508-523,525-532 1upc d1upcb3 B:383-400,528-533,535-550,551-559 1t9d d1t9dd3 D:472-488,614-620,621-635,637-645 1t9d d1t9db3 B:472-488,614-620,621-635,637-645 2iht d2ihtb3 B:383-400,528-533,535-550,551-559 1upa d1upab3 B:383-400,528-533,535-550,551-559 1itz d1itza2 A:367-384,500-505,508-523,525-532 1upb d1upbb3 B:383-400,528-533,535-550,551-559 1upa d1upaa3 A:383-400,528-533,535-550,551-559 2ihv d2ihvb3 B:383-400,528-533,535-550,551-559 2iht d2ihta3 A:383-400,528-533,535-550,551-559 2ihu d2ihua3 A:383-400,528-533,535-550,551-559 1upc d1upcf3 F:383-400,528-533,535-550,551-559 1upb d1upba3 A:383-400,528-533,535-550,551-559 1upb d1upbd3 D:383-400,528-534,535-550,551-559 2g28 d2g28a2 A:113-125,287-293,365-379,383-390 2qtc d2qtca2 A:113-125,287-293,365-379,383-390 1qgd d1qgda2 A:33-45,210-218,220-235,238-245 1qgd d1qgdb2 B:33-45,210-218,220-235,238-245 2qtc d2qtcb2 B:113-125,287-293,365-379,383-390 1rp7 d1rp7a2 A:113-125,287-293,365-379,383-390 2g67 d2g67a2 A:113-125,287-293,365-379,383-390 2r5n d2r5nb2 B:33-45,210-218,220-235,238-245 2r8o d2r8oa2 A:33-45,210-218,220-235,238-245 2dji d2djia3 A:367-379,505-511,513-530,531-539 2r8o d2r8ob2 B:33-45,210-218,220-235,238-245 2r8p d2r8pa2 A:33-45,210-218,220-235,238-245 2g67 d2g67b2 B:113-125,287-293,365-379,383-390 2r8p d2r8pb2 B:33-45,210-218,220-235,238-245 2g25 d2g25a2 A:113-125,287-293,365-379,383-390 1v5f d1v5fa3 A:367-379,505-511,513-530,531-539 1rp7 d1rp7b2 B:113-125,287-293,365-379,383-390 1v5e d1v5ea3 A:367-379,505-511,513-530,531-539 2r5n d2r5na2 A:33-45,210-218,220-235,238-245 2g25 d2g25b2 B:113-125,287-293,365-379,383-390 2iea d2ieaa2 A:113-125,287-293,365-380,383-390 1l8a d1l8aa1 A:113-125,287-293,365-380,383-390 1ovm d1ovma3 A:361-373,499-505,506-520,522-530 1v5g d1v5ga3 A:367-379,505-511,513-530,531-539 1itz d1itzc1 C:45-57,223-231,234-249,252-259 1itz d1itzb1 B:45-57,223-229,234-249,252-259 2c3p d2c3pb1 B:9-22,138-143,145-164,165-173 1itz d1itza1 A:45-57,223-229,234-249,252-259 2uza d2uzab1 B:9-22,138-143,145-164,165-173 1zpd d1zpda2 A:4-17,132-139,140-159,159-168 1ovm d1ovmc3 C:361-373,498-505,506-520,522-530 2c3m d2c3mb1 B:9-22,138-143,145-164,165-173 2c3y d2c3ya1 A:9-22,138-143,145-164,165-173 1tkc d1tkcb1 B:37-48,212-218,223-238,241-248 1zpd d1zpdb2 B:4-17,132-139,140-159,159-168 1zpd d1zpdf2 F:4-17,132-139,140-159,159-168 1zpd d1zpde2 E:4-17,132-139,140-159,159-168 1ovm d1ovmd3 D:361-373,499-505,506-520,522-530 2c3y d2c3yb1 B:9-22,138-143,145-164,165-173 1ay0 d1ay0a1 A:37-48,212-218,223-238,241-248 2c42 d2c42b1 B:9-22,138-143,145-164,165-173 1kek d1kekb1 B:9-22,138-143,145-164,165-173 2c42 d2c42a1 A:9-22,138-143,145-164,165-173 1ovm d1ovmb3 B:361-373,499-505,506-520,522-530 2c3u d2c3ua1 A:9-22,138-143,145-164,165-173 1kek d1keka1 A:9-22,138-143,145-164,165-173 2c3o d2c3ob1 B:9-22,138-143,145-164,165-173 2c3m d2c3ma1 A:9-22,138-143,145-164,165-173 2c3p d2c3pa1 A:9-22,138-143,145-164,165-173 1upc d1upca3 A:383-400,528-533,535-550,551-560 2c3u d2c3ub1 B:9-22,138-143,145-164,165-173 2uza d2uzaa1 A:9-22,138-143,145-164,165-173 1w88 d1w88c_ C:81-93,229-235,237-255,257-265 1b0p d1b0pb1 B:9-22,138-143,145-164,165-173 2pda d2pdab1 B:9-22,138-143,145-164,165-173 2pda d2pdaa1 A:9-22,138-143,145-164,165-173 1ngs d1ngsb1 B:37-48,212-218,223-238,241-248 1b0p d1b0pa1 A:9-22,138-143,145-164,165-173 1trk d1trka1 A:37-48,212-220,223-238,241-248 1w88 d1w88a_ A:81-93,229-235,237-255,257-265 1ngs d1ngsa1 A:37-48,212-218,223-238,241-248 1ay0 d1ay0b1 B:37-48,212-218,223-238,241-248 1pvd d1pvda2 A:5-18,133-139,141-160,161-169 1tkb d1tkba1 A:37-48,212-218,223-238,241-248 1tkb d1tkbb1 B:37-48,212-218,223-238,241-248 1trk d1trkb1 B:37-48,212-218,223-238,241-248 1l8a d1l8aa2 A:493-509,654-659,662-679,685-692 1w88 d1w88g_ G:81-93,229-235,237-255,257-265 1tkc d1tkca1 A:37-48,212-218,223-238,241-248 2iea d2ieaa1 A:493-509,654-659,662-679,685-692 1gpu d1gpua1 A:37-48,212-218,223-238,241-248 1tka d1tkaa1 A:37-48,212-218,223-238,241-248 1w88 d1w88e_ E:81-93,229-235,237-255,257-265 1pyd d1pyda2 A:5-18,133-139,141-160,160-168 2iea d2ieab1 B:493-509,654-659,662-679,685-692 2c3o d2c3oa1 A:9-22,138-143,145-164,165-173 2c31 d2c31a3 A:376-392,514-520,521-536,537-545 1rp7 d1rp7a1 A:493-509,654-659,662-679,685-692 2qta d2qtaa1 A:493-509,654-659,662-679,685-692 2qta d2qtab1 B:493-509,654-659,662-679,685-692 2g25 d2g25a1 A:493-509,654-659,662-679,685-692 2qtc d2qtca1 A:493-509,654-659,662-679,685-692 1gpu d1gpub1 B:37-48,212-218,223-238,241-248 1l8a d1l8ab2 B:493-509,654-659,662-679,685-692 2g67 d2g67b1 B:493-509,654-659,662-679,685-692 1tka d1tkab1 B:37-48,212-218,223-238,241-248 2c31 d2c31b3 B:376-392,514-520,521-536,537-545 1pvd d1pvdb2 B:5-18,133-139,141-160,161-169 1umc d1umcc_ C:73-85,231-237,239-257,259-267 2g25 d2g25b1 B:493-509,654-659,662-679,685-692 2g28 d2g28a1 A:493-509,654-659,662-679,685-692 2g28 d2g28b1 B:493-509,654-659,662-679,685-692 1olu d1olua_ A:92-104,248-255,257-276,276-285 2g67 d2g67a1 A:493-509,654-659,662-679,685-692 1umb d1umbc_ C:73-85,231-237,239-257,259-267 2ji6 d2ji6a3 A:376-392,514-520,521-536,537-545 2ihv d2ihva3 A:383-399,528-533,535-550,551-559 2jib d2jibb3 B:376-392,514-520,521-536,537-545 1umd d1umdc_ C:73-85,231-237,239-257,259-267 1umc d1umca_ A:73-85,231-237,239-257,259-267 2ji7 d2ji7a3 A:376-392,514-520,521-536,537-545 2ji7 d2ji7b3 B:376-392,514-520,521-536,537-545 1umd d1umda_ A:73-85,231-237,239-257,259-267 2ji8 d2ji8a3 A:376-392,514-520,521-536,537-545 2ji8 d2ji8b3 B:376-392,514-520,521-536,537-545 2ji9 d2ji9a3 A:376-392,514-520,521-536,537-545 1qpb d1qpba3 A:366-379,507-513,514-525,532-540 2jib d2jiba3 A:376-392,514-520,521-536,537-545 1umb d1umba_ A:73-85,231-237,239-257,259-267 1w85 d1w85c_ C:81-92,229-235,237-255,257-265 1x7w d1x7wa_ A:92-104,248-255,257-276,276-285 1pyd d1pydb2 B:5-18,133-139,141-160,161-170 2ji6 d2ji6b3 B:376-392,514-520,521-536,537-545 2ji9 d2ji9b3 B:376-392,514-520,521-536,537-545 1w85 d1w85a_ A:81-92,229-235,237-255,257-265 1x7y d1x7ya_ A:92-104,248-255,257-276,276-285 2bfc d2bfca1 A:92-104,248-255,257-276,276-285 2ozl d2ozlb1 B:4-21,142-147,149-164,165-171 1qpb d1qpba2 A:5-18,134-139,141-160,160-170 1w85 d1w85g_ G:81-92,229-235,237-255,257-265 1ni4 d1ni4b1 B:4-21,142-147,149-164,165-171 2ozl d2ozld1 D:4-21,142-147,149-164,165-171 1x7x d1x7xa_ A:92-104,248-255,257-276,276-285 1ni4 d1ni4d1 D:4-21,142-147,149-164,165-171 1w85 d1w85e_ E:81-92,229-235,237-255,257-265 1umc d1umcb1 B:5-22,143-148,150-165,166-173 2bfb d2bfba1 A:92-104,248-255,257-276,276-285 1umc d1umcd1 D:5-22,143-148,150-165,166-173 1um9 d1um9b1 B:5-22,143-148,150-165,166-173 1umb d1umbb1 B:5-22,143-148,150-165,166-173 1umd d1umdb1 B:5-22,143-148,150-165,166-173 1umd d1umdd1 D:5-22,143-148,150-165,166-173 2bfe d2bfea1 A:92-104,248-255,257-276,276-285 1um9 d1um9d1 D:5-22,143-148,150-165,166-173 1umb d1umbd1 D:5-22,143-148,150-165,166-173 1qpb d1qpbb2 B:5-18,133-139,144-160,160-169 2fn3 d2fn3a3 A:354-366,492-498,499-513,515-523 1um9 d1um9c_ C:73-85,231-237,239-257,259-268 1ni4 d1ni4c_ C:68-80,221-227,229-247,249-257 1ovm d1ovmc2 C:6-19,136-140,144-160,160-168 1ovm d1ovma2 A:6-19,136-140,144-160,160-168 1ovm d1ovmd2 D:6-19,136-140,144-160,160-168 1pi3 d1pi3a3 A:354-366,492-498,499-513,515-523 1ovm d1ovmb2 B:6-19,136-140,144-160,160-168 2ozl d2ozlc1 C:68-80,221-227,229-247,249-257 1mcz d1mczc3 C:354-366,492-498,499-513,515-523 1mcz d1mcze3 E:354-366,492-498,499-513,515-523 1um9 d1um9a_ A:73-85,231-237,239-257,259-268 1mcz d1mczm3 M:354-366,492-498,499-513,515-523 1mcz d1mczg3 G:354-366,492-498,499-513,515-523 1mcz d1mczj3 J:354-366,492-498,499-513,515-523 1mcz d1mczl3 L:354-366,492-498,499-513,515-523 1mcz d1mczd3 D:354-366,492-498,499-513,515-523 1mcz d1mczo3 O:354-366,492-498,499-513,515-523 1yno d1ynoa3 A:354-366,492-498,499-513,515-523 1mcz d1mczp3 P:354-366,492-498,499-513,515-523 1mcz d1mcza3 A:354-366,492-498,499-513,515-523 1mcz d1mczb3 B:354-366,492-498,499-513,515-523 1mcz d1mczk3 K:354-366,492-498,499-513,515-523 1mcz d1mczh3 H:354-366,492-498,499-513,515-523 2fwn d2fwna3 A:354-366,492-498,499-513,515-523 1yi1 d1yi1a2 A:98-111,220-225,227-244,247-255 1mcz d1mczf3 F:354-366,492-498,499-513,515-523 1q6z d1q6za3 A:354-366,492-498,499-513,515-523 1mcz d1mczi3 I:354-366,492-498,499-513,515-523 1mcz d1mczn3 N:354-366,492-498,499-513,515-523 1po7 d1po7a3 A:354-366,492-498,499-513,515-523 1bfd d1bfda3 A:354-366,492-498,499-513,515-523 1yi0 d1yi0a2 A:98-111,220-225,227-244,247-255 2ozl d2ozla1 A:68-80,221-227,229-247,249-257 2c3o d2c3ob2 B:815-829,1035-1041,1045-1060,1061-1069 2c3o d2c3oa2 A:815-829,1035-1041,1045-1060,1061-1069 1yhz d1yhza2 A:98-111,220-225,227-244,247-255 1ybh d1ybha2 A:98-111,220-225,227-244,247-255 2v3w d2v3wb3 B:354-366,492-498,499-513,515-523 2v3w d2v3wd3 D:354-366,492-498,499-513,515-523 1yhy d1yhya2 A:98-111,220-225,227-244,247-255 2qtc d2qtcb1 B:493-509,654-659,662-680,685-692 1rp7 d1rp7b1 B:493-509,654-659,662-680,685-692 2uza d2uzab2 B:815-829,1035-1041,1045-1060,1061-1069 1ozh d1ozhb2 B:12-25,133-138,140-157,160-168 2c3u d2c3ub2 B:815-829,1035-1041,1045-1060,1061-1069 2c3u d2c3ua2 A:815-829,1035-1041,1045-1060,1061-1069 2c3p d2c3pb2 B:815-829,1035-1041,1045-1060,1061-1069 1z8n d1z8na2 A:98-111,220-225,227-244,247-255 1pvd d1pvdb3 B:366-379,507-513,514-524,532-540 2pda d2pdab2 B:815-829,1035-1041,1045-1060,1061-1069 2c3y d2c3ya2 A:815-829,1035-1041,1045-1060,1061-1069 2pda d2pdaa2 A:815-829,1035-1041,1045-1060,1061-1069 1b0p d1b0pa2 A:815-829,1035-1041,1045-1060,1061-1069 2c3y d2c3yb2 B:815-829,1035-1041,1045-1060,1061-1069 1upc d1upce2 E:13-26,133-139,141-159,161-169 2c42 d2c42b2 B:815-829,1035-1041,1045-1060,1061-1069 2v3w d2v3wa3 A:354-366,492-498,499-513,515-523 1kek d1kekb2 B:815-829,1035-1041,1045-1060,1061-1069 1b0p d1b0pb2 B:815-829,1035-1041,1045-1060,1061-1069 2v3w d2v3wc3 C:354-366,492-498,499-513,515-523 2uza d2uzaa2 A:815-829,1035-1041,1045-1060,1061-1069 2c3p d2c3pa2 A:815-829,1035-1041,1045-1060,1061-1069 2c3m d2c3mb2 B:815-829,1035-1041,1045-1060,1061-1069 2c3m d2c3ma2 A:815-829,1035-1041,1045-1060,1061-1069 1upc d1upcf2 F:13-26,133-139,141-159,161-169 2c42 d2c42a2 A:815-829,1035-1041,1045-1060,1061-1069 1pyd d1pydb3 B:366-379,507-513,514-524,532-540 1ozh d1ozhc2 C:12-25,133-138,140-157,160-168 1upc d1upcb2 B:13-26,133-139,141-159,161-169 1kek d1keka2 A:815-829,1035-1041,1045-1060,1061-1069 1upa d1upad2 D:13-26,133-139,141-159,161-169 1upc d1upcc2 C:13-26,133-139,141-159,161-169 1ozh d1ozha2 A:12-25,133-138,140-157,160-168 1upc d1upcd2 D:13-26,133-139,141-159,161-169 2ihu d2ihua2 A:13-26,133-139,141-159,161-169 1upb d1upba2 A:13-26,133-139,141-159,161-169 1upc d1upca2 A:13-26,133-139,141-159,161-169 2iht d2ihtd2 D:13-26,133-139,141-159,161-169 1upa d1upac2 C:13-26,133-139,141-159,161-169 1upb d1upbc2 C:13-26,133-139,141-159,161-169 1qpb d1qpbb3 B:366-379,507-513,514-524,532-540 1upb d1upbd2 D:13-26,133-139,141-159,161-169 2iht d2ihtc2 C:13-26,133-139,141-159,161-169 2iht d2ihta2 A:13-26,133-139,141-159,161-169 1ozg d1ozga2 A:12-25,133-138,140-157,160-168 1upa d1upaa2 A:13-26,133-139,141-159,161-169 2jib d2jiba2 A:11-24,134-139,141-158,161-170 1u5b d1u5ba_ A:92-104,248-255,257-276,276-286 2ihv d2ihvd2 D:13-26,133-139,141-159,161-169 2ihv d2ihva2 A:13-26,133-139,141-159,161-169 1upa d1upab2 B:13-26,133-139,141-159,161-169 2ihv d2ihvb2 B:13-26,133-139,141-159,161-169 1upb d1upbb2 B:13-26,133-139,141-159,161-169 1ozh d1ozhd2 D:12-25,132-138,140-157,160-168 2iht d2ihtb2 B:13-26,133-139,141-159,161-169 1t9d d1t9da2 A:93-106,214-220,222-239,242-250 1pyd d1pyda3 A:366-378,506-513,514-524,532-540 1ozf d1ozfa2 A:12-25,133-138,140-157,160-168 1t9c d1t9cb2 B:93-106,214-220,222-239,242-250 1t9c d1t9ca2 A:93-106,214-220,222-239,242-250 1n0h d1n0ha2 A:93-106,214-220,222-239,242-250 2ji6 d2ji6b2 B:11-24,133-139,141-158,161-170 1ozf d1ozfb2 B:12-25,133-138,140-157,160-168 1n0h d1n0hb2 B:93-106,214-220,222-239,242-250 2ji8 d2ji8a2 A:11-24,133-139,141-158,161-170 1t9b d1t9ba2 A:93-106,214-220,222-239,242-250 2ji6 d2ji6a2 A:11-24,133-139,141-158,161-170 2jib d2jibb2 B:11-24,133-139,141-158,161-170 2c31 d2c31a2 A:11-24,133-139,141-158,161-170 1pvd d1pvda3 A:366-378,506-513,514-525,532-540 1t9a d1t9ab2 B:93-106,214-220,222-239,242-250 2ji7 d2ji7a2 A:11-24,133-139,141-158,161-170 1t9b d1t9bb2 B:93-106,214-220,222-239,242-250 1t9a d1t9aa2 A:93-106,214-220,222-239,242-250 1ozg d1ozgb2 B:12-25,133-138,140-157,160-168 2ji7 d2ji7b2 B:11-24,133-139,141-158,161-170 2ji9 d2ji9a2 A:11-24,133-139,141-158,161-170 1t9d d1t9dc2 C:93-106,214-220,222-239,242-250 1t9d d1t9db2 B:93-106,214-220,222-239,242-250 1t9d d1t9dd2 D:93-106,214-220,222-239,242-250 2ji8 d2ji8b2 B:11-24,133-139,141-158,161-170 2ji9 d2ji9b2 B:11-24,133-139,141-158,161-170 1jsc d1jscb2 B:93-106,214-220,222-239,242-250 1jsc d1jsca2 A:93-106,214-220,222-239,242-250 2c31 d2c31b2 B:11-24,133-139,141-158,161-170 2bp7 d2bp7c1 C:109-124,270-276,278-296,298-307 1qs0 d1qs0a_ A:109-124,270-276,278-296,298-307 2bp7 d2bp7e1 E:109-124,270-276,278-296,298-307 2bp7 d2bp7g1 G:109-124,270-276,278-296,298-307 1x80 d1x80a_ A:89-104,248-255,257-276,276-285 1v1m d1v1ma_ A:89-104,248-255,257-276,276-285 2bp7 d2bp7a1 A:109-124,270-276,278-296,298-307 1v11 d1v11a_ A:89-104,248-255,257-276,276-285 1v16 d1v16a_ A:89-104,248-255,257-276,276-285 1v1r d1v1ra_ A:89-104,248-255,257-276,276-285 2bfd d2bfda1 A:89-104,248-255,257-276,276-285 1ols d1olsa_ A:89-104,248-255,257-276,276-285 2bff d2bffa1 A:89-104,248-255,257-276,276-285 1olx d1olxa_ A:89-104,248-255,257-276,276-285 1x7z d1x7za_ A:89-104,248-255,257-276,276-285 1ni4 d1ni4a_ A:65-80,221-227,229-247,249-257 2bew d2bewa1 A:89-104,248-255,257-276,276-286 2bev d2beva1 A:89-104,248-255,257-276,276-286 1dtw d1dtwa_ A:89-104,248-255,257-276,276-286 1wci d1wcia1 A:89-104,248-255,257-276,276-286 2beu d2beua1 A:89-104,248-255,257-276,276-286 1r9j d1r9jb2 B:26-45,210-216,221-236,239-246 1r9j d1r9ja2 A:26-45,210-216,221-236,239-246 2g28 d2g28b2 B:106-125,287-293,365-379,383-390 2qta d2qtaa2 A:106-125,287-293,365-379,383-390 2qta d2qtab2 B:106-125,287-293,365-379,383-390 2iea d2ieab2 B:106-125,287-293,365-379,383-390 1l8a d1l8ab1 B:106-125,287-293,365-379,383-390 2dji d2djia2 A:29-41,130-135,137-156,157-165 1v5f d1v5fa2 A:32-39,130-135,137-156,157-165 6. c.56.5 Zn-dependent exopeptidases core: mixed beta-sheet of 8 strands, order 12435867; strands 2, 6 & 7 are antiparallel to the rest ! Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops 2q43 d2q43a1 A:47-62,84-93,117-136,141-150 1xmb d1xmba1 A:68-83,105-114,138-157,162-171 1y7e d1y7ea2 A:34-50,89-96,253-269,275-284 2c1c d2c1cb1 B:14-30,60-67,72-89,103-110 2c1c d2c1ca1 A:14-30,60-67,72-89,103-110 1zli d1zlia1 A:14-30,60-67,72-90,103-110 1ysj d1ysja1 A:27-42,65-75,99-118,122-132 2jew d2jewa1 A:14-30,60-67,72-90,103-110 2pjb d2pjbc1 C:14-30,60-67,72-90,103-110 1ysj d1ysjb1 B:27-42,65-75,99-118,122-132 1vgy d1vgyb1 B:25-38,61-70,101-121,125-134 1vgy d1vgya1 A:25-38,61-70,101-121,125-134 1z5r d1z5rc1 C:14-30,60-67,72-90,103-110 2boa d2boaa1 A:1014-1030,1060-1067,1072-1090,1103-1110 2pjc d2pjcc1 C:14-30,60-67,72-90,103-110 2pj3 d2pj3c1 C:14-30,60-67,72-90,103-110 2pj5 d2pj5c1 C:14-30,60-67,72-90,103-110 2pj2 d2pj2c1 C:14-30,60-67,72-90,103-110 2pj1 d2pj1c1 C:14-30,60-67,72-90,103-110 2piy d2piyc1 C:14-30,60-67,72-90,103-110 1kwm d1kwma1 A:14-30,60-67,72-90,103-110 2boa d2boab1 B:1014-1030,1060-1067,1072-1090,1103-1110 2pja d2pjac1 C:14-30,60-67,72-90,103-110 1zg8 d1zg8a1 A:14-30,60-67,72-90,103-110 2pj7 d2pj7c1 C:14-30,60-67,72-90,103-110 2pj0 d2pj0c1 C:14-30,60-67,72-90,103-110 2gre d2grei2 I:25-40,63-70,187-205,209-218 2pj0 d2pj0a1 A:14-30,60-67,72-90,103-110 2pj8 d2pj8c1 C:14-30,60-67,72-90,103-110 1kwm d1kwmb1 B:14-30,60-67,72-90,103-110 1zg9 d1zg9a1 A:14-30,60-67,72-90,103-110 1zg7 d1zg7c1 C:14-30,60-67,72-90,103-110 2pcu d2pcua1 A:14-30,60-67,72-90,103-110 1ylo d1ylob2 B:19-34,54-64,164-184,187-197 1ylo d1yloc2 C:19-34,54-64,164-184,187-197 1h8l d1h8la2 A:15-31,65-72,77-95,108-115 1zg9 d1zg9c1 C:14-30,60-67,72-90,103-110 2piz d2piza1 A:14-30,60-67,72-90,103-110 1ylo d1ylod2 D:19-34,54-64,164-184,187-197 2bo9 d2bo9a1 A:14-30,60-67,72-90,103-110 2bo9 d2bo9c1 C:14-30,60-67,72-90,103-110 1ylo d1yloa2 A:19-34,54-64,164-184,187-197 1zg7 d1zg7a1 A:14-30,60-67,72-90,103-110 2pj9 d2pj9a1 A:14-30,60-67,72-90,103-110 1ylo d1yloe2 E:19-34,54-64,164-184,187-197 1zg9 d1zg9b1 B:14-30,60-67,72-90,103-110 2pj4 d2pj4a1 A:14-30,60-67,72-90,103-110 1qmu d1qmua2 A:15-31,65-72,77-95,108-115 1ylo d1ylof2 F:19-34,54-64,164-184,187-197 2piz d2pizc1 C:14-30,60-67,72-90,103-110 2pj4 d2pj4b1 B:14-30,60-67,72-90,103-110 2piz d2pizb1 B:14-30,60-67,72-90,103-110 1zg8 d1zg8c1 C:14-30,60-67,72-90,103-110 1q7l d1q7l.2 C:30-46,73-82,113-132,136-146 2pj0 d2pj0b1 B:14-30,60-67,72-90,103-110 2pja d2pjaa1 A:14-30,60-67,72-90,103-110 1q7l d1q7l.1 A:30-46,73-82,113-132,136-146 1dtd d1dtda_ A:370-386,415-422,427-445,458-465 2pj5 d2pj5a1 A:14-30,60-67,72-90,103-110 2pj6 d2pj6a1 A:14-30,60-67,72-90,103-110 2pj3 d2pj3a1 A:14-30,60-67,72-90,103-110 1zg7 d1zg7b1 B:14-30,60-67,72-90,103-110 1uwy d1uwya2 A:7-23,57-64,69-87,100-107 1zg8 d1zg8b1 B:14-30,60-67,72-90,103-110 1z5r d1z5ra1 A:14-30,60-67,72-90,103-110 2pja d2pjab1 B:14-30,60-67,72-90,103-110 1jqg d1jqga1 A:14-30,60-67,72-90,103-110 1aye d1ayea1 A:14-30,60-67,72-90,103-110 2pj2 d2pj2b1 B:14-30,60-67,72-90,103-110 2pj2 d2pj2a1 A:14-30,60-67,72-90,103-110 2pj3 d2pj3b1 B:14-30,60-67,72-90,103-110 2pjb d2pjba1 A:14-30,60-67,72-90,103-110 2pj1 d2pj1a1 A:14-30,60-67,72-90,103-110 2pj5 d2pj5b1 B:14-30,60-67,72-90,103-110 1nsa d1nsaa1 A:14-30,60-67,72-90,103-110 2pj7 d2pj7a1 A:14-30,60-67,72-90,103-110 1z5r d1z5rb1 B:14-30,60-67,72-90,103-110 1y0r d1y0ra2 A:27-38,60-70,180-197,201-211 2pjc d2pjcb1 B:14-30,60-67,72-90,103-110 2pj1 d2pj1b1 B:14-30,60-67,72-90,103-110 2piy d2piyb1 B:14-30,60-67,72-90,103-110 2piy d2piya1 A:14-30,60-67,72-90,103-110 2pjb d2pjbb1 B:14-30,60-67,72-90,103-110 2pj7 d2pj7b1 B:14-30,60-67,72-90,103-110 4cpa d4cpab_ B:14-30,60-67,72-90,103-110 4cpa d4cpaa_ A:14-30,60-67,72-90,103-110 2pj8 d2pj8b1 B:14-30,60-67,72-90,103-110 2pjc d2pjca1 A:14-30,60-67,72-90,103-110 1bav d1bavb_ B:14-30,60-67,72-90,103-110 2pj8 d2pj8a1 A:14-30,60-67,72-90,103-110 2rfh d2rfha1 A:14-30,60-67,72-90,103-110 1bav d1bavd_ D:14-30,60-67,72-90,103-110 2abz d2abzb1 B:14-30,60-67,72-90,103-110 7cpa d7cpaa_ A:14-30,60-67,72-90,103-110 1y0y d1y0ya2 A:27-38,59-70,180-197,201-211 1obr d1obra_ A:11-27,60-68,72-90,103-110 1lcp d1lcpb2 B:179-196,244-250,274-291,294-306 1f57 d1f57a_ A:14-30,60-67,72-90,103-110 1zlh d1zlha1 A:14-30,60-67,72-90,103-110 1lok d1loka_ A:39-61,90-97,117-136,140-149 1hee d1heeb_ B:14-30,60-67,72-90,103-110 1hdu d1hdub_ B:14-30,60-67,72-90,103-110 1cbx d1cbxa_ A:14-30,60-67,72-90,103-110 1cps d1cpsa_ A:14-30,60-67,72-90,103-110 1hee d1heee_ E:14-30,60-67,72-90,103-110 1hdu d1hdue_ E:14-30,60-67,72-90,103-110 1pyt d1pytb_ B:14-30,60-67,72-90,103-110 1cpx d1cpxa_ A:14-30,60-67,72-90,103-110 2abz d2abza1 A:14-30,60-67,72-90,103-110 5cpa d5cpaa_ A:14-30,60-67,72-90,103-110 1hee d1heea_ A:14-30,60-67,72-90,103-110 1hdu d1hdua_ A:14-30,60-67,72-90,103-110 1txr d1txra_ A:39-61,90-97,117-136,140-149 1arm d1arma_ A:14-30,60-67,72-90,103-110 2iq6 d2iq6a1 A:39-61,90-97,117-136,140-149 1hee d1heed_ D:14-30,60-67,72-90,103-110 1hdu d1hdud_ D:14-30,60-67,72-90,103-110 3cpa d3cpaa_ A:14-30,60-67,72-90,103-110 2prq d2prqa1 A:39-61,90-97,117-136,140-149 1lcp d1lcpa2 A:179-196,244-250,274-291,294-306 2anp d2anpa1 A:39-61,90-97,117-136,140-149 1elm d1elmp_ P:14-30,60-67,72-90,103-110 6cpa d6cpaa_ A:14-30,60-67,72-90,103-110 2ctc d2ctca_ A:14-30,60-67,72-90,103-110 1yme d1ymea_ A:14-30,60-67,72-90,103-110 1ee3 d1ee3p_ P:14-30,60-67,72-90,103-110 1ell d1ellp_ P:14-30,60-67,72-90,103-110 1iy7 d1iy7a_ A:14-30,60-67,72-90,103-110 1xfo d1xfoc2 C:27-38,59-70,180-198,201-211 2ctb d2ctba_ A:14-30,60-67,72-90,103-110 1m4l d1m4la_ A:14-30,60-67,72-90,103-110 1arl d1arla_ A:14-30,60-67,72-90,103-110 1bav d1bavc_ C:14-30,60-67,72-90,103-110 8cpa d8cpaa_ A:14-30,60-67,72-90,103-110 1hdq d1hdqa_ A:14-30,60-67,72-90,103-110 1bav d1bava_ A:14-30,60-67,72-90,103-110 2afs d2afsa1 A:81-99,132-142,159-175,190-200 2afm d2afma1 A:81-99,132-142,159-175,190-200 2afs d2afsb1 B:81-99,132-142,159-175,190-200 2afo d2afob1 B:81-99,132-142,159-175,190-200 2afz d2afza1 A:81-99,132-142,159-175,190-200 2afw d2afwa1 A:81-99,132-142,159-175,190-200 2afx d2afxa1 A:81-99,132-142,159-175,190-200 1vix d1vixa1 A:28-46,72-79,138-159,163-171 2afu d2afub1 B:81-99,132-142,159-175,190-200 2zeh d2zehb1 B:81-99,132-142,159-175,190-200 2zeh d2zeha1 A:81-99,132-142,159-175,190-200 2afm d2afmb1 B:81-99,132-142,159-175,190-200 2afz d2afzb1 B:81-99,132-142,159-175,190-200 2afw d2afwb1 B:81-99,132-142,159-175,190-200 1xbu d1xbua1 A:31-49,78-86,94-116,121-129 2afx d2afxb1 B:81-99,132-142,159-175,190-200 1tkh d1tkha1 A:31-49,78-86,94-116,121-129 1vix d1vixb1 B:28-46,72-79,138-159,163-171 1tkf d1tkfa1 A:31-49,78-86,94-116,121-129 1tf9 d1tf9a1 A:31-49,78-86,97-116,121-129 1fno d1fnoa4 A:28-46,72-80,138-158,163-172 1tkj d1tkja1 A:31-49,78-86,97-116,121-129 1cp7 d1cp7a_ A:31-49,78-86,94-116,121-129 1qq9 d1qq9a_ A:31-49,78-86,94-116,121-129 1tf8 d1tf8a1 A:31-49,78-86,97-116,121-129 2dea d2deaa1 A:39-60,90-97,117-136,140-149 1xjo d1xjoa_ A:31-49,78-86,97-116,121-129 1cx8 d1cx8d3 D:159-177,401-410,415-441,446-455 1igb d1igba_ A:39-60,90-97,114-136,140-149 2nsu d2nsua3 A:159-177,401-410,415-441,446-455 1cx8 d1cx8a3 A:159-177,401-410,415-441,446-455 2nyq d2nyqa1 A:39-60,90-97,117-136,140-149 1cx8 d1cx8c3 C:159-177,401-410,415-441,446-455 1vho d1vhoa2 A:21-34,58-66,168-189,191-200 1cx8 d1cx8e3 E:159-177,401-410,415-441,446-455 1cx8 d1cx8g3 G:159-177,401-410,415-441,446-455 1f2p d1f2pa_ A:31-49,78-86,94-116,121-129 1cx8 d1cx8f3 F:159-177,401-410,415-441,446-455 1f2o d1f2oa_ A:31-49,78-86,97-116,121-129 1rtq d1rtqa_ A:39-60,90-97,117-136,140-149 1ft7 d1ft7a_ A:39-60,90-97,117-136,140-149 1xry d1xrya1 A:39-61,90-99,117-136,140-150 2c6p d2c6pa3 A:86-104,370-379,384-409,413-423 2ewb d2ewba1 A:179-196,244-250,271-291,294-306 2jbj d2jbja3 A:86-104,370-379,384-409,413-423 2gre d2grem2 M:24-39,63-70,185-205,210-218 1xfo d1xfoa2 A:27-38,59-69,180-198,201-210 2gre d2gred2 D:24-40,63-71,185-205,209-219 2c6g d2c6ga3 A:86-104,370-379,384-409,413-423 2afo d2afoa1 A:81-99,132-141,159-175,190-199 2pvv d2pvva3 A:86-104,370-379,384-409,413-423 2c6c d2c6ca3 A:86-104,370-379,384-409,413-423 2afu d2afua1 A:81-99,132-141,159-175,190-199 2oot d2oota3 A:86-104,370-379,384-409,413-423 3bi0 d3bi0a3 A:86-104,370-379,384-409,413-423 2pvw d2pvwa3 A:86-104,370-379,384-409,413-423 2or4 d2or4a3 A:86-104,370-379,384-409,413-423 1cx8 d1cx8h3 H:159-177,401-410,415-441,445-455 3bhx d3bhxa3 A:86-104,370-379,384-409,413-423 3bi1 d3bi1a3 A:86-104,370-379,384-409,413-423 1cx8 d1cx8b3 B:159-177,401-410,415-441,445-455 2nsu d2nsub3 B:159-177,401-410,415-441,445-455 2cij d2cija3 A:86-104,370-379,384-409,413-423 1lfw d1lfwa1 A:42-60,80-89,119-138,143-152 2gre d2grel2 L:24-40,63-71,185-205,209-219 2jbk d2jbka3 A:86-104,370-379,384-409,413-423 1xfo d1xfod2 D:27-38,59-69,180-197,201-210 1gyt d1gytd2 D:199-215,264-276,294-311,313-326 1de4 d1de4f3 F:159-177,401-410,415-441,445-455 1de4 d1de4c3 C:159-177,401-410,415-441,445-455 1de4 d1de4i3 I:159-177,401-410,415-441,445-455 1gyt d1gytc2 C:199-215,264-276,294-311,313-326 1gyt d1gytb2 B:199-215,264-276,294-311,313-326 1gyt d1gyti2 I:199-215,264-276,294-311,313-326 1gyt d1gyta2 A:199-215,264-276,294-311,313-326 2gre d2greo2 O:24-40,63-70,185-205,209-218 2gre d2gree2 E:24-39,63-71,186-205,209-219 2gre d2grea2 A:24-39,62-71,186-205,209-219 1gyt d1gytj2 J:199-215,264-276,294-311,313-326 2fvg d2fvga2 A:15-28,53-61,164-181,185-194 1bpn d1bpna1 A:179-196,243-256,274-291,294-306 1gyt d1gytg2 G:199-215,264-276,294-311,313-326 1gyt d1gytf2 F:199-215,264-276,294-311,313-326 2gre d2gren2 N:24-39,62-71,186-205,209-219 1vhe d1vhea2 A:23-36,60-70,180-201,203-213 1gyt d1gyte2 E:199-215,264-276,294-311,313-326 1gyt d1gytl2 L:199-215,264-276,294-311,313-326 1gyt d1gyth2 H:199-215,264-276,294-311,313-326 1gyt d1gytk2 K:199-215,264-276,294-311,313-326 2j9a d2j9aa1 A:179-196,243-256,274-291,294-306 2gre d2grek2 K:24-39,62-71,186-205,209-219 2gre d2greg2 G:24-39,63-70,186-205,209-218 2gre d2grej2 J:24-39,63-70,185-205,209-218 2gre d2grec2 C:24-39,62-71,186-205,209-219 1cp6 d1cp6a_ A:39-60,90-99,117-136,140-150 1amp d1ampa_ A:39-60,90-99,117-136,140-150 2gre d2greb2 B:24-39,62-70,186-205,209-218 1r3n d1r3nf1 F:67-85,107-114,124-144,148-157 1r3n d1r3ng1 G:67-85,107-114,124-144,148-157 1z8l d1z8la3 A:86-104,370-378,384-409,413-422 1z8l d1z8lb3 B:86-104,370-378,384-409,413-422 1z8l d1z8lc3 C:86-104,370-378,384-409,413-422 1z8l d1z8ld3 D:86-104,370-378,384-409,413-422 1r3n d1r3nh1 H:67-85,107-114,124-144,148-157 1r3n d1r3na1 A:67-85,107-114,124-144,148-157 1r3n d1r3nd1 D:67-85,107-114,124-144,148-157 1r3n d1r3nb1 B:67-85,107-114,124-144,148-157 1xfo d1xfob2 B:24-38,59-69,180-197,201-210 1r3n d1r3nc1 C:67-85,107-114,124-144,148-157 2gre d2grep2 P:24-37,63-70,186-205,209-218 1r3n d1r3ne1 E:67-85,107-114,124-144,148-157 2gre d2greh2 H:24-39,63-70,187-205,209-218 1cg2 d1cg2b1 B:59-78,105-114,141-160,163-174 1cg2 d1cg2a1 A:59-78,105-114,141-160,163-174 1bpm d1bpma1 A:179-196,243-256,271-291,294-306 2gre d2gref2 F:24-37,63-70,184-205,209-218 1r43 d1r43a1 A:67-85,107-114,124-144,148-157 1cg2 d1cg2c1 C:59-78,102-114,141-160,163-174 1r43 d1r43b1 B:67-85,108-114,124-144,148-157 1lam d1lama1 A:179-196,244-256,274-291,294-306 1lap d1lapa1 A:179-196,244-256,274-291,294-306 1lan d1lana2 A:179-196,244-256,274-291,294-306 1cg2 d1cg2d1 D:59-78,102-113,141-160,163-173 2imo d2imoa1 A:35-53,76-83,91-114,117-126 1z2l d1z2lb1 B:35-53,77-85,93-114,117-127 1bll d1blle2 E:179-196,244-256,272-291,294-306 2ewb d2ewba1 A:179-196,251-256,271-291,294-306 2imo d2imob1 B:35-53,76-85,93-114,117-127 1z2l d1z2la1 A:35-53,76-83,93-114,117-126 8. c.95.1 Thiolase-like Thiolase-like consists of two similar domains related by pseudo dyad; duplication ! 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32451; strand 5 is antiparallel to the rest 1ub7 d1ub7b2 B:108-127,241-246,277-293,297-307 1mzj d1mzja2 A:119-138,252-257,289-305,308-319 1mzj d1mzjb2 B:119-138,252-257,289-305,310-319 2ahb d2ahbb2 B:120-139,253-258,290-306,310-320 2aj9 d2aj9b2 B:120-139,253-258,290-306,310-320 2eft d2eftb2 B:110-129,239-244,275-291,297-306 1hzp d1hzpb2 B:110-129,239-244,275-291,295-305 1ub7 d1ub7c2 C:108-127,241-246,277-293,297-308 1hnh d1hnha2 A:110-129,239-244,275-291,297-306 1hzp d1hzpa2 A:110-129,239-244,275-291,295-305 1ub7 d1ub7a2 A:108-127,241-246,277-293,297-308 2ahb d2ahba2 A:120-139,253-258,290-306,310-320 1u6e d1u6ea2 A:110-129,239-244,275-291,295-305 2aj9 d2aj9a2 A:120-139,253-258,290-306,310-320 1hnd d1hnda2 A:110-129,239-244,275-291,297-306 2gyo d2gyob2 B:110-129,239-244,275-291,297-306 1hnj d1hnja2 A:110-129,239-244,275-291,297-306 2qo1 d2qo1a2 A:110-129,239-244,275-291,295-305 2eft d2efta2 A:110-129,239-244,275-291,297-306 1u6s d1u6sa2 A:110-129,239-244,275-291,295-305 1hn9 d1hn9a2 A:110-129,239-244,275-291,297-306 1ebl d1eblb2 B:110-129,239-244,275-291,297-306 2gyo d2gyoa2 A:110-129,239-244,275-291,297-306 1u6e d1u6eb2 B:110-129,239-244,275-291,295-305 1ub7 d1ub7d2 D:108-127,241-246,277-293,297-308 2qo0 d2qo0b2 B:110-129,239-244,275-291,295-305 1mzs d1mzsa2 A:110-129,239-244,275-291,297-306 2qny d2qnyb2 B:110-129,239-244,275-291,295-305 1ebl d1ebla2 A:110-129,239-244,275-291,297-306 2qo0 d2qo0a2 A:110-129,239-244,275-291,295-305 2qny d2qnya2 A:110-129,239-244,275-291,295-305 2qnz d2qnza2 A:110-129,239-244,275-291,295-305 2qnx d2qnxa2 A:110-129,239-244,275-291,295-305 1hn9 d1hn9b2 B:1110-1129,1239-1244,1275-1291,1297-1306 2qnz d2qnzb2 B:110-129,239-244,275-291,295-305 2qnx d2qnxb2 B:110-129,239-244,275-291,295-305 2qo1 d2qo1b2 B:110-129,239-244,275-291,295-305 1u6s d1u6sb2 B:110-129,239-244,275-291,295-305 2qx1 d2qx1b2 B:110-129,239-244,275-291,295-305 2qx1 d2qx1a2 A:110-129,239-244,275-291,295-305 1m1m d1m1ma2 A:121-140,254-259,291-307,313-321 1txt d1txtc2 C:109-129,228-233,276-293,296-307 1u0m d1u0ma2 A:136-156,265-270,304-320,326-334 1tee d1teeb_ B:173-193,308-313,347-363,368-379 1tee d1teed_ D:173-193,308-313,347-363,368-379 1txt d1txtb2 B:109-129,228-233,276-293,296-307 1tee d1teea_ A:173-193,308-313,347-363,368-379 1oxh d1oxhc2 C:162-181,298-303,338-357,387-396 1oxh d1oxha2 A:162-181,298-303,338-357,387-396 1tee d1teec_ C:173-193,308-313,347-363,368-379 1ted d1teda_ A:173-193,308-313,347-363,368-379 1oxh d1oxhb2 B:162-181,298-303,338-357,387-396 1oxh d1oxhd2 D:162-181,298-303,338-357,387-396 1xpk d1xpkb2 B:109-129,228-233,276-293,296-307 1ted d1tedd_ D:173-193,308-313,347-363,368-379 1ted d1tedc_ C:173-193,308-313,347-363,368-379 1ox0 d1ox0a2 A:162-181,298-303,338-357,387-396 1fj4 d1fj4a2 A:164-180,293-298,334-353,383-392 1ted d1tedb_ B:173-193,308-313,347-363,368-379 1txt d1txta2 A:109-129,228-233,276-293,298-307 1txt d1txtd2 D:109-129,228-233,276-293,298-307 2alm d2alma2 A:162-181,298-303,338-357,387-396 2ix4 d2ix4a2 A:207-226,345-350,390-409,440-449 1w0i d1w0ia2 A:207-226,345-350,390-409,440-449 1tqy d1tqyb2 B:159-178,292-297,333-352,382-391 1u0m d1u0mb2 B:136-156,265-271,304-320,324-335 1tvz d1tvza2 A:109-129,228-233,276-293,296-307 1g5x d1g5xc2 C:164-180,293-298,334-353,383-392 1g5x d1g5xb2 B:164-180,293-298,334-353,383-392 1tqy d1tqyd2 D:159-178,292-297,333-352,382-391 1g5x d1g5xa2 A:164-180,293-298,334-353,383-392 1g5x d1g5xd2 D:164-180,293-298,334-353,383-392 1e5m d1e5ma2 A:165-184,302-307,345-364,394-403 1w0i d1w0ib2 B:207-226,345-350,390-409,440-449 1tqy d1tqyf2 F:159-178,292-297,333-352,382-391 1tqy d1tqyh2 H:159-178,292-297,333-352,382-391 2gfx d2gfxa2 A:164-180,298-303,341-360,391-400 2ix4 d2ix4b2 B:207-226,345-350,390-409,440-449 2vb7 d2vb7c2 C:164-180,293-298,334-353,383-392 2vb8 d2vb8c2 C:161-180,293-298,334-353,383-392 1fj8 d1fj8c2 C:161-180,293-298,334-353,383-392 1fj8 d1fj8d2 D:161-180,293-298,334-353,383-392 2vb8 d2vb8a2 A:161-180,293-298,334-353,383-392 2aqb d2aqbd2 D:164-180,293-298,334-353,383-392 1fj8 d1fj8a2 A:161-180,293-298,334-353,383-392 2aq7 d2aq7a2 A:164-180,293-298,334-353,383-392 1fj8 d1fj8b2 B:161-180,293-298,334-353,383-392 1xpk d1xpkc2 C:109-129,228-233,276-293,298-307 2bui d2buid2 D:161-180,293-298,334-353,383-392 2aq7 d2aq7c2 C:164-180,293-298,334-353,383-392 2vb8 d2vb8d2 D:161-180,293-298,334-353,383-392 1fj4 d1fj4b2 B:161-180,293-298,334-353,383-392 1j3n d1j3nb2 B:159-178,296-301,339-358,387-396 1fj4 d1fj4c2 C:161-180,293-298,334-353,383-392 2byy d2byya2 A:164-180,293-298,334-353,383-392 2vb8 d2vb8b2 B:161-180,293-298,334-353,383-392 2byz d2byzd2 D:161-180,293-298,334-353,383-392 1fj4 d1fj4d2 D:161-180,293-298,334-353,383-392 2byz d2byza2 A:161-180,293-298,334-353,383-392 2bui d2buib2 B:161-180,293-298,334-353,383-392 2bz3 d2bz3d2 D:161-180,293-298,334-353,383-392 2aq7 d2aq7b2 B:161-180,293-298,334-353,383-392 2bz3 d2bz3a2 A:161-180,293-298,334-353,383-392 2vb9 d2vb9c2 C:161-180,293-298,334-353,383-392 2bui d2buia2 A:161-180,293-298,334-353,383-392 2bz4 d2bz4a2 A:161-180,293-298,334-353,383-392 2bui d2buic2 C:161-180,293-298,334-353,383-392 2aq7 d2aq7d2 D:161-180,293-298,334-353,383-392 2bz4 d2bz4d2 D:161-180,293-298,334-353,383-392 2byy d2byyb2 B:161-180,293-298,334-353,383-392 2cdh d2cdha2 A:161-180,293-298,334-353,383-392 2cdh d2cdhb2 B:161-180,293-298,334-353,383-392 2cdh d2cdhe2 E:161-180,293-298,334-353,383-392 2cdh d2cdhd2 D:161-180,293-298,334-353,383-392 2byz d2byzc2 C:161-180,293-298,334-353,383-392 2cdh d2cdhc2 C:161-180,293-298,334-353,383-392 2cdh d2cdhf2 F:161-180,293-298,334-353,383-392 1dd8 d1dd8b2 B:161-180,293-298,334-353,383-392 1ek4 d1ek4c2 C:161-180,293-298,334-353,383-392 2vb7 d2vb7a2 A:161-180,293-298,334-353,383-392 2cf2 d2cf2j2 J:161-180,293-298,334-353,383-392 1ek4 d1ek4b2 B:161-180,293-298,334-353,383-392 2byx d2byxd2 D:161-180,293-298,334-353,383-392 2aqb d2aqbb2 B:161-180,293-298,334-353,383-392 2bz3 d2bz3c2 C:161-180,293-298,334-353,383-392 1ek4 d1ek4a2 A:161-180,293-298,334-353,383-392 2cf2 d2cf2a2 A:161-180,293-298,334-353,383-392 2byx d2byxc2 C:161-180,293-298,334-353,383-392 2vba d2vbac2 C:161-180,293-298,334-353,383-392 2bz4 d2bz4c2 C:161-180,293-298,334-353,383-392 1h4f d1h4fc2 C:161-180,293-298,334-353,383-392 1ek4 d1ek4d2 D:161-180,293-298,334-353,383-392 2byz d2byzb2 B:161-180,293-298,334-353,383-392 2byx d2byxb2 B:161-180,293-298,334-353,383-392 2vba d2vbaa2 A:161-180,293-298,334-353,383-392 2vb9 d2vb9b2 B:161-180,293-298,334-353,383-392 1dd8 d1dd8d2 D:161-180,293-298,334-353,383-392 1h4f d1h4fd2 D:161-180,293-298,334-353,383-392 2vb7 d2vb7d2 D:161-180,293-298,334-353,383-392 2gfv d2gfva2 A:161-180,298-303,341-360,391-400 1f91 d1f91a2 A:161-180,293-298,334-353,383-392 2vb9 d2vb9a2 A:161-180,293-298,334-353,383-392 1f91 d1f91d2 D:161-180,293-298,334-353,383-392 2buh d2buhc2 C:161-180,293-298,334-353,383-392 1j3n d1j3na2 A:159-178,296-301,339-358,387-396 2byx d2byxa2 A:161-180,293-298,334-353,383-392 2gfy d2gfya2 A:161-180,297-303,341-360,391-400 1dd8 d1dd8a2 A:161-180,293-298,334-353,383-392 2vba d2vbab2 B:161-180,293-298,334-353,383-392 2buh d2buha2 A:161-180,293-298,334-353,383-392 2byy d2byyd2 D:161-180,293-298,334-353,383-392 2aqb d2aqba2 A:161-180,293-298,334-353,383-392 1h4f d1h4fb2 B:161-180,293-298,334-353,383-392 2bz3 d2bz3b2 B:161-180,293-298,334-353,383-392 2aqb d2aqbc2 C:161-180,293-298,334-353,383-392 2vba d2vbad2 D:161-180,293-298,334-353,383-392 2byw d2bywd2 D:161-180,293-298,334-353,383-392 2byw d2bywb2 B:161-180,293-298,334-353,383-392 1dd8 d1dd8c2 C:161-180,293-298,334-353,383-392 2byw d2bywc2 C:161-180,293-298,334-353,383-392 1h4f d1h4fa2 A:161-180,293-298,334-353,383-392 2vb7 d2vb7b2 B:161-180,293-298,334-353,383-392 2bz4 d2bz4b2 B:161-180,293-298,334-353,383-392 2vb9 d2vb9d2 D:161-180,293-298,334-353,383-392 2buh d2buhd2 D:161-180,293-298,334-353,383-392 1xpk d1xpka2 A:111-129,228-233,276-293,296-307 2buh d2buhb2 B:161-180,293-298,334-353,383-392 1f91 d1f91b2 B:161-180,293-298,334-353,383-392 2byw d2bywa2 A:161-180,293-298,334-353,383-392 1xpl d1xplb2 B:110-129,228-233,276-293,298-307 1f91 d1f91c2 C:161-180,293-298,334-353,383-392 2gfw d2gfwa2 A:161-180,297-303,341-360,391-400 1kas d1kasa2 A:161-180,298-303,341-360,391-400 1xpm d1xpmb2 B:111-129,228-233,276-293,296-307 1xpm d1xpmc2 C:111-129,228-233,276-293,296-307 1b3n d1b3na2 A:164-180,297-303,341-360,391-400 1xpl d1xplc2 C:110-129,228-233,276-293,298-307 2byy d2byyc2 C:161-180,293-298,334-353,383-392 1tqy d1tqyc2 C:170-186,304-309,347-366,396-405 1bi5 d1bi5a2 A:163-182,298-303,337-357,366-374 1xpk d1xpkd2 D:111-129,228-233,276-293,296-307 1xpm d1xpma2 A:111-129,228-233,276-293,296-307 1xpm d1xpmd2 D:111-129,228-233,276-293,296-307 1i88 d1i88b2 B:163-182,298-303,337-357,366-374 1xpl d1xpla2 A:111-129,228-233,276-293,296-307 1tqy d1tqyg2 G:170-186,304-309,347-366,396-405 1i88 d1i88a2 A:163-182,298-303,337-357,366-374 1chw d1chwa2 A:163-182,298-303,337-357,366-374 1i89 d1i89a2 A:163-182,298-303,337-357,366-374 1d6f d1d6fa2 A:163-182,298-303,337-357,366-374 1i89 d1i89b2 B:163-182,298-303,337-357,366-374 1i8b d1i8bb2 B:163-182,298-303,337-357,366-374 1xpl d1xpld2 D:111-129,228-233,276-293,296-307 1cml d1cmla2 A:163-182,298-303,337-357,366-374 1hnk d1hnka2 A:113-129,239-244,275-291,297-304 1cgk d1cgka2 A:163-182,298-303,337-357,366-374 1tqy d1tqya2 A:170-186,304-309,347-366,396-405 1tqy d1tqye2 E:170-186,304-309,347-366,396-405 1chw d1chwb2 B:163-182,298-303,337-357,366-374 1bq6 d1bq6a2 A:162-182,298-303,337-357,366-374 1d6i d1d6ib2 B:162-182,298-303,337-357,366-374 1d6h d1d6ha2 A:162-182,298-303,337-357,366-374 1ulq d1ulqa2 A:87-106,317-322,357-377,379-388 1i8b d1i8ba2 A:162-182,298-303,337-357,366-374 1ulq d1ulqb2 B:87-106,317-322,357-377,379-388 1ulq d1ulqc2 C:87-106,317-322,357-377,379-388 1wdk d1wdkc2 C:93-112,307-312,348-368,370-379 1ulq d1ulqd2 D:87-106,317-322,357-377,379-388 1d6i d1d6ia2 A:162-182,298-303,337-357,366-374 1m1o d1m1od2 D:90-106,311-316,349-369,371-380 1ulq d1ulqg2 G:87-106,317-322,357-377,379-388 1ulq d1ulqh2 H:87-106,317-322,357-377,379-388 1wdl d1wdlc2 C:93-112,307-312,348-368,370-379 1qfl d1qfld2 D:90-106,311-316,349-369,371-380 1ulq d1ulqe2 E:87-106,317-322,357-377,379-388 1m1t d1m1td2 D:90-106,311-316,349-369,371-380 1ulq d1ulqf2 F:87-106,317-322,357-377,379-388 1dlv d1dlvd2 D:90-106,311-316,349-369,371-380 1wdl d1wdld2 D:93-112,307-312,348-368,370-379 1dm3 d1dm3d2 D:90-106,311-316,349-369,371-380 1qlv d1qlva2 A:167-187,303-308,342-362,371-380 1qlv d1qlvb2 B:167-187,303-308,342-362,371-380 1m1o d1m1oa2 A:90-106,311-316,349-369,371-380 1dlu d1dlud2 D:90-106,311-316,349-369,371-380 1qfl d1qflb2 B:90-106,311-316,349-369,371-380 1ou6 d1ou6d2 D:90-106,311-316,349-369,371-380 1m1o d1m1ob2 B:90-106,311-316,349-369,371-380 1dlv d1dlvb2 B:90-106,311-316,349-369,371-380 1nl7 d1nl7b2 B:90-106,311-316,349-369,371-380 1nl7 d1nl7d2 D:90-106,311-316,349-369,371-380 1dlu d1dluc2 C:90-106,311-316,349-369,371-380 2d3t d2d3tc2 C:93-112,307-312,348-368,370-379 1nl7 d1nl7a2 A:90-106,311-316,349-369,371-380 1m4s d1m4sb2 B:90-106,311-316,349-369,371-380 1wdm d1wdmc2 C:93-112,307-312,348-368,370-379 1dlu d1dlub2 B:90-106,311-316,349-369,371-380 1m1t d1m1ta2 A:90-106,311-316,349-369,371-380 1dm3 d1dm3a2 A:90-106,311-316,349-369,371-380 1dlv d1dlvc2 C:90-106,311-316,349-369,371-380 1m3k d1m3kd2 D:90-106,311-316,349-369,371-380 1m3z d1m3zb2 B:90-106,311-316,349-369,371-380 1wdm d1wdmd2 D:93-112,307-312,348-368,370-379 1m3z d1m3za2 A:90-106,311-316,349-369,371-380 1qfl d1qflc2 C:90-106,311-316,349-369,371-380 1ou6 d1ou6b2 B:90-106,311-316,349-369,371-380 1m3k d1m3ka2 A:90-106,311-316,349-369,371-380 1m1t d1m1tb2 B:90-106,311-316,349-369,371-380 1dlv d1dlva2 A:90-106,311-316,349-369,371-380 2d3t d2d3td2 D:93-112,307-312,348-368,370-379 1qfl d1qfla2 A:90-106,311-316,349-369,371-380 1m3k d1m3kb2 B:90-106,311-316,349-369,371-380 1dm3 d1dm3b2 B:90-106,311-316,349-369,371-380 1ee0 d1ee0a2 A:167-187,303-308,342-362,371-380 1ee0 d1ee0b2 B:167-187,303-308,342-362,371-380 1dm3 d1dm3c2 C:90-106,311-316,349-369,371-380 1ou6 d1ou6a2 A:90-106,311-316,349-369,371-380 1m4s d1m4sa2 A:90-106,311-316,349-369,371-380 1afw d1afwa2 A:126-142,338-343,376-393,395-405 1afw d1afwb2 B:126-142,338-343,376-393,395-405 1ou6 d1ou6c2 C:90-106,311-316,349-369,371-380 1m3z d1m3zc2 C:90-106,311-316,349-369,371-380 1m4s d1m4sd2 D:90-106,311-316,349-369,371-380 1nl7 d1nl7c2 C:90-106,311-316,349-369,371-380 1m1o d1m1oc2 C:90-106,311-316,349-369,371-380 1pxt d1pxtb2 B:126-142,338-343,376-393,395-405 1dlu d1dlua2 A:90-106,311-316,349-369,371-380 1m3z d1m3zd2 D:90-106,311-316,349-369,371-380 1u0v d1u0vb2 B:165-182,298-303,337-357,366-374 1m1t d1m1tc2 C:90-106,311-316,349-369,371-380 1m3k d1m3kc2 C:90-106,311-316,349-369,371-380 1m4s d1m4sc2 C:90-106,311-316,349-369,371-380 1u0v d1u0va2 A:165-182,298-303,337-357,366-374 1u0w d1u0wc2 C:165-182,298-303,337-357,366-375 1u0u d1u0uf2 F:168-185,301-306,340-360,369-377 1u0w d1u0wa2 A:165-182,298-303,337-357,366-375 1u0w d1u0wd2 D:165-182,298-303,337-357,366-375 1pxt d1pxta2 A:126-142,338-343,376-393,395-405 1u0w d1u0wb2 B:165-182,298-303,337-357,366-375 1i86 d1i86a2 A:165-182,298-303,337-357,366-375 1wdk d1wdkd2 D:96-112,307-312,348-368,370-379 1cgz d1cgza2 A:163-182,298-303,337-357,366-375 1jwx d1jwxa2 A:165-182,298-303,337-357,366-375 1u0u d1u0ub2 B:168-185,301-306,340-360,369-378 1u0u d1u0uc2 C:168-185,301-306,340-360,369-378 1u0u d1u0ud2 D:168-185,301-306,340-360,369-378 1u0u d1u0ue2 E:168-185,301-306,340-360,369-378 1u0u d1u0ua2 A:168-185,301-306,340-360,369-378 1m1m d1m1mb2 B:124-140,254-259,291-307,313-321 1m4t d1m4td2 D:91-106,311-316,349-369,371-380 1m4t d1m4ta2 A:91-106,311-316,349-369,371-380 1m4t d1m4tb2 B:91-106,311-316,349-369,371-380 1m4t d1m4tc2 C:91-106,311-316,349-369,371-380 11. c.119.1 DAK1/DegV-like domain folds and architecture show some similarity to the tubulin-like GTPases; the nucleotide-binding sites of the Dihydroxyacetone kinase and tubulin families are different ! DAK1/DegV-like 2 different domains; d1: [core: 3 layers, a/b/a; parallel sheet of 5 strands, order: 2134]; D2: [2 layers, a/b; mixed sheet of 6 strands, order 321645; strands 2 and 6 are antiparallel to the rest] 1oi3 d1oi3b_ B:20-34,55-65,66-74,80-87 1uod d1uodb_ B:20-34,55-65,66-74,80-87 1oi3 d1oi3a_ A:20-34,55-65,66-74,80-87 1uoe d1uoeb_ B:20-34,55-64,66-74,80-86 1oi2 d1oi2a_ A:20-34,55-65,66-74,80-87 1uoe d1uoea_ A:20-34,55-64,66-74,80-86 1oi2 d1oi2b_ B:20-34,55-64,66-74,80-86 1uod d1uoda_ A:20-34,55-64,66-74,80-86 1un8 d1un8b4 B:8-24,51-56,61-69,75-79 1un8 d1un8a4 A:8-24,51-56,61-69,75-79 15. c.96.1 Fe-only hydrogenase Fe-only hydrogenase consist of two intertwined domains; contains partial duplication 1hfe d1hfem1 M:179-191,342-352,352-366,371-377 1hfe d1hfel1 L:179-191,342-352,352-366,371-377 1c4a d1c4aa1 A:300-312,463-473,473-484,492-498 1c4c d1c4ca1 A:300-312,463-473,473-484,492-498 3c8y d3c8ya1 A:300-312,463-473,473-484,492-498 1feh d1feha1 A:300-312,463-473,473-484,492-498 18. c.79.1 Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes consists of two similar domains related by pseudo dyad; duplication ! core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214 1j0b d1j0be_ E:27-35,183-189,279-297,301-309 1j0b d1j0bx_ X:27-35,183-189,279-297,301-309 1j0b d1j0bd_ D:27-35,183-190,279-297,301-309 1j0b d1j0bi_ I:27-35,183-190,279-297,301-309 1j0b d1j0bg_ G:27-35,183-189,279-297,301-309 1j0b d1j0bj_ J:27-35,183-189,279-297,301-309 1j0b d1j0bo_ O:27-35,183-189,279-297,301-309 1j0b d1j0bc_ C:27-35,183-189,279-297,301-308 1j0b d1j0bl_ L:27-35,183-189,279-297,301-308 1j0b d1j0bp_ P:27-35,183-189,279-297,301-309 1j0b d1j0bq_ Q:27-35,183-189,279-297,301-308 1j0a d1j0ac_ C:27-35,183-190,279-297,301-309 1j0a d1j0aa_ A:27-35,183-189,279-297,301-309 1j0a d1j0ab_ B:27-35,183-189,279-297,301-309 1j0b d1j0bs_ S:27-35,183-189,279-297,301-309 1v8z d1v8za1 A:56-64,220-226,343-361,364-371 1j0b d1j0bt_ T:27-35,183-189,279-297,301-309 1j0b d1j0bb_ B:27-35,183-190,279-297,301-309 1tdj d1tdja1 A:37-45,181-187,286-304,307-316 1v8z d1v8zc1 C:56-64,220-226,343-361,364-371 1j0b d1j0bn_ N:27-35,183-189,279-297,301-309 1j0b d1j0bk_ K:27-35,183-189,279-297,301-308 1j0b d1j0ba_ A:27-35,183-190,279-297,301-309 1wdw d1wdwf1 F:56-64,220-226,343-361,364-371 1v8z d1v8zd1 D:56-64,220-226,343-361,364-371 1wdw d1wdwh1 H:56-64,220-226,343-361,364-371 1j0b d1j0bw_ W:27-35,183-190,279-297,301-309 1j0b d1j0bh_ H:27-35,183-189,279-297,301-308 1j0b d1j0bv_ V:27-35,183-190,279-297,301-309 1v8z d1v8zb1 B:56-64,220-226,343-361,364-372 1j0b d1j0bf_ F:27-35,183-190,279-297,301-309 1j0b d1j0bu_ U:27-35,183-189,279-297,301-309 1wdw d1wdwj1 J:56-64,220-226,343-361,364-372 1wdw d1wdwl1 L:56-64,220-226,343-361,364-372 1wdw d1wdwb1 B:56-64,220-226,343-361,364-372 1wdw d1wdwd1 D:56-64,220-226,343-361,364-372 1m54 d1m54d_ D:92-100,249-255,347-364,368-376 1jbq d1jbqc_ C:92-100,249-255,347-362,368-376 1jbq d1jbqe_ E:92-100,249-255,347-362,368-376 1jbq d1jbqd_ D:92-100,249-255,347-362,368-376 1jbq d1jbqa_ A:92-100,249-255,347-362,368-376 1j0b d1j0bm_ M:27-35,183-190,279-297,301-309 1jbq d1jbqb_ B:92-100,249-255,347-362,368-376 1jbq d1jbqf_ F:92-100,249-255,347-362,368-376 1m54 d1m54a_ A:92-100,249-254,347-362,368-376 1m54 d1m54b_ B:92-100,249-255,347-362,368-376 1m54 d1m54f_ F:92-100,249-254,347-362,368-376 1m54 d1m54e_ E:92-100,249-255,347-362,368-376 1m54 d1m54c_ C:92-100,249-255,347-364,368-376 1tz2 d1tz2c_ C:21-29,191-198,291-309,313-323 1tzk d1tzkc_ C:21-29,191-198,291-309,313-323 1tyz d1tyzc_ C:21-29,191-198,291-309,313-323 1tz2 d1tz2b_ B:21-29,191-198,291-309,313-323 1tzm d1tzmc_ C:21-29,191-198,291-309,313-323 1tzj d1tzjc_ C:21-29,191-198,291-309,313-323 1tzm d1tzma_ A:21-29,191-198,291-309,313-323 1tyz d1tyzd_ D:21-29,191-198,291-309,313-323 1tzk d1tzkb_ B:21-29,191-198,291-309,313-323 1tzk d1tzka_ A:21-29,191-198,291-309,313-323 1rqx d1rqxc_ C:21-29,191-198,291-309,313-323 1tzm d1tzmd_ D:21-29,191-198,291-309,313-323 1rqx d1rqxb_ B:21-29,191-198,291-309,313-323 1tz2 d1tz2a_ A:21-29,191-198,291-309,313-323 1tzj d1tzja_ A:21-29,191-198,291-309,313-323 1tzm d1tzmb_ B:21-29,191-198,291-309,313-323 1rqx d1rqxa_ A:21-29,191-198,291-309,313-323 1tzk d1tzkd_ D:21-29,191-198,291-309,313-323 1rqx d1rqxd_ D:21-29,191-198,291-309,313-323 1tz2 d1tz2d_ D:21-29,191-198,291-309,313-323 1tyz d1tyzb_ B:21-29,191-198,291-309,313-323 1j0b d1j0br_ R:27-35,183-190,279-297,301-308 1tzj d1tzjd_ D:21-29,191-198,291-309,313-323 1tyz d1tyza_ A:21-29,191-198,291-309,313-323 1tzj d1tzjb_ B:21-29,191-198,291-309,313-323 1wtc d1wtca1 A:32-40,176-182,281-295,299-308 1j0c d1j0cd_ D:21-29,194-201,292-310,314-324 1j0c d1j0cc_ C:21-29,194-201,292-310,314-324 1v71 d1v71a1 A:32-40,176-182,281-295,301-308 1f2d d1f2dc_ C:21-29,194-201,292-310,314-324 1j0d d1j0dc_ C:21-29,194-201,292-310,314-324 1f2d d1f2da_ A:21-29,194-201,292-310,314-324 1j0d d1j0dd_ D:21-29,194-201,292-310,314-324 1j0d d1j0da_ A:21-29,194-201,292-310,314-324 1j0c d1j0ca_ A:21-29,194-201,292-310,316-324 1j0e d1j0ed_ D:21-29,194-201,292-310,314-324 1f2d d1f2dd_ D:21-29,194-201,292-310,314-324 1j0e d1j0ec_ C:21-29,194-201,292-310,314-324 1e5x d1e5xb_ B:136-145,288-294,402-419,426-433 1j0c d1j0cb_ B:21-29,194-201,292-310,314-324 1j0e d1j0eb_ B:21-29,194-201,292-310,314-324 1e5x d1e5xa_ A:136-145,288-294,402-419,426-433 1ve5 d1ve5d1 D:26-34,171-177,277-291,296-303 1j0d d1j0db_ B:21-29,194-201,292-310,314-324 1ve5 d1ve5b1 B:26-34,171-177,277-291,296-303 1f2d d1f2db_ B:21-29,194-201,292-310,314-324 1ve5 d1ve5c1 C:26-34,171-177,277-291,296-304 1j0e d1j0ea_ A:21-29,194-201,292-310,314-324 1ve5 d1ve5a1 A:26-34,171-177,277-291,296-304 1pwh d1pwhd_ D:16-24,160-167,267-280,297-304 1pwh d1pwhc_ C:16-24,160-167,267-280,297-304 1pwh d1pwha_ A:16-24,160-167,267-280,297-304 1pwh d1pwhb_ B:16-24,160-167,267-280,297-304 1pwe d1pwec_ C:16-24,161-167,267-280,297-304 1pwe d1pwed_ D:16-24,161-167,267-280,297-304 1pwe d1pweb_ B:16-24,161-167,267-280,297-304 1pwe d1pwee_ E:16-24,161-167,267-280,297-304 1pwe d1pwea_ A:16-24,161-167,267-280,297-304 1pwe d1pwef_ F:16-24,161-167,267-280,297-304 1p5j d1p5ja_ A:16-24,161-167,267-280,297-304 21. c.1.6 PLP-binding barrel circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand ! TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 1ct5 d1ct5a_ A:8-33,218-224,226-234,236-241 1b54 d1b54a_ A:8-33,218-224,226-234,236-241 1tuf d1tufb2 B:51-66,257-263,277-297,299-306 1twi d1twid2 D:51-66,257-263,277-297,299-305 1twi d1twia2 A:51-66,257-263,277-297,299-306 1twi d1twic2 C:51-66,257-263,277-297,299-305 1twi d1twib2 B:51-66,257-263,277-297,299-305 1tuf d1tufa2 A:51-66,257-263,277-293,299-306 1vft d1vfta2 A:14-29,202-206,208-216,221-226 1vfs d1vfsb2 B:1014-1029,1202-1206,1208-1216,1221-1226 1qu4 d1qu4d2 D:45-60,230-236,247-264,269-276 1qu4 d1qu4b2 B:45-60,230-236,247-264,269-276 1qu4 d1qu4a2 A:45-60,230-236,247-264,269-276 1qu4 d1qu4c2 C:45-60,230-236,247-264,269-276 1szr d1szrc2 C:45-60,230-236,247-264,269-276 1szr d1szrb2 B:45-60,230-236,247-264,269-276 7odc d7odca2 A:45-60,230-236,247-264,269-276 1szr d1szrd2 D:45-60,230-236,247-264,269-276 1f3t d1f3tb2 B:45-60,230-236,247-264,269-276 1f3t d1f3tc2 C:45-60,230-236,247-264,269-276 1szr d1szra2 A:45-60,230-236,247-264,269-276 1f3t d1f3td2 D:45-60,230-236,247-264,269-276 1f3t d1f3ta2 A:45-60,230-236,247-264,269-276 2tod d2toda2 A:45-60,230-236,247-264,269-276 2tod d2todc2 C:45-60,230-236,247-264,269-276 1njj d1njjd2 D:45-60,230-236,247-264,269-276 1njj d1njjc2 C:45-60,230-236,247-264,269-276 2tod d2todb2 B:45-60,230-236,247-264,269-276 1njj d1njjb2 B:45-60,230-236,247-264,269-276 1njj d1njja2 A:45-60,230-236,247-264,269-276 2tod d2todd2 D:45-60,230-236,247-264,269-276 1d7k d1d7ka2 A:45-60,230-236,247-264,269-276 1d7k d1d7kb2 B:45-60,230-236,247-264,269-276 28. c.74.1 AraD/HMP-PK domain-like AraD/HMP-PK domain-like 3 layers: a/b/a; mixed (mostly antiparallel) beta-sheet of 9 strands, order 432159876; left-handed crossover between strands 4 and 5 1e49 d1e49p_ P:73-85,121-127,133-147,148-153 3fua d3fuaa_ A:73-85,121-127,133-148,148-153 1dzw d1dzwp_ P:73-85,121-127,133-148,148-153 1e47 d1e47p_ P:73-85,121-127,133-147,148-153 1e4c d1e4cp_ P:71-85,121-127,133-148,148-153 1fua d1fuaa_ A:73-85,121-127,133-148,148-153 1e4a d1e4ap_ P:73-85,121-127,133-147,148-153 1dzy d1dzyp_ P:71-85,121-127,133-148,148-153 1e4b d1e4bp_ P:73-85,121-127,133-148,148-153 1dzz d1dzzp_ P:73-85,121-127,133-148,148-153 2fua d2fuaa_ A:73-85,121-127,133-148,148-153 1dzu d1dzup_ P:73-85,121-127,133-148,148-153 1e48 d1e48p_ P:73-85,121-127,133-148,148-153 1dzv d1dzvp_ P:73-85,121-127,133-148,148-153 1dzx d1dzxp_ P:73-85,121-127,133-148,148-153 4fua d4fuaa_ A:73-85,121-127,133-148,148-153 2pb9 d2pb9a1 A:339-351,382-386,398-415,419-427 2pb9 d2pb9b1 B:339-351,382-386,398-415,419-427 2php d2phpe1 E:312-323,350-354,364-378,382-390 2php d2phpa1 A:312-327,350-354,364-378,382-390 2php d2phpb1 B:312-324,350-354,364-378,382-390 2php d2phpd1 D:312-327,350-354,364-378,382-390 1k0w d1k0wb_ B:74-88,124-130,140-157,164-169 1k0w d1k0wf_ F:74-88,124-130,140-157,164-169 1jdi d1jdia_ A:74-88,124-130,140-157,164-169 1k0w d1k0wd_ D:74-88,124-129,140-157,164-169 1k0w d1k0wc_ C:74-88,124-130,140-157,164-169 1k0w d1k0wa_ A:74-88,124-130,140-157,164-169 1jdi d1jdid_ D:74-88,124-129,140-157,164-169 29. e.23.1 Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 4 domains: (1&2) duplication: share the same alpha/beta fold; (3) beta-barrel; (4) alpha+beta 3cw9 d3cw9a1 A:64-78,197-202,207-222,223-228 3cw9 d3cw9b1 B:64-78,197-202,207-222,223-228 1t5d d1t5dx_ X:64-78,197-202,207-222,223-228 1t5h d1t5hx_ X:64-78,197-202,207-222,223-228 1ry2 d1ry2a_ A:199-213,355-360,365-380,381-388 1amu d1amub_ B:99-113,224-229,234-248,249-254 1amu d1amua_ A:99-113,224-229,234-248,249-254 1pg4 d1pg4a_ A:142-156,300-304,309-324,326-332 1pg4 d1pg4b_ B:142-156,300-304,309-324,326-332 1pg3 d1pg3b_ B:142-156,300-304,309-324,326-332 1pg3 d1pg3a_ A:142-156,300-304,309-324,326-332 1mdb d1mdba_ A:26-39,222-229,242-250,250-256 1mdf d1mdfa_ A:26-39,222-229,242-250,250-256 1ult d1ulta_ A:19-32,218-225,235-244,244-252 1ult d1ultb_ B:19-32,218-225,235-244,244-252 1v25 d1v25a_ A:19-32,218-225,235-244,244-252 1v25 d1v25b_ B:19-32,218-225,235-244,244-252 1v26 d1v26b_ B:19-32,218-225,235-244,244-252 1v25 d1v25a_ A:82-96,218-225,235-244,244-252 1v25 d1v25b_ B:82-96,218-225,235-244,244-252 1v26 d1v26b_ B:82-96,218-225,235-244,244-252 1lci d1lcia_ A:85-99,235-240,245-259,260-265 1mdf d1mdfa_ A:85-99,222-229,242-250,250-256 1mdb d1mdba_ A:85-99,222-229,242-250,250-256 1ba3 d1ba3a_ A:85-99,235-240,245-259,260-265 1v26 d1v26a_ A:19-32,220-225,235-244,245-251 3cw9 d3cw9b1 B:3-16,197-202,207-222,223-228 3cw9 d3cw9a1 A:3-16,197-202,207-222,223-228 1t5d d1t5dx_ X:3-16,197-202,207-222,223-228 1md9 d1md9a_ A:85-99,224-229,242-250,251-256 1lci d1lcia_ A:21-37,235-240,245-259,260-265 1ba3 d1ba3a_ A:21-37,235-240,245-259,260-265 1t5h d1t5hx_ X:3-16,197-202,207-222,223-228 1mdb d1mdba_ A:85-99,222-229,234-241,250-256 1mdf d1mdfa_ A:85-99,222-229,234-241,250-256 1md9 d1md9a_ A:85-99,224-229,234-241,251-256 1ry2 d1ry2a_ A:132-146,355-360,365-380,381-388 30. c.145.1 NadA-like NadA-like duplication; consists of three similar domains related by pseudo threefold symmetry; 3 layers, a/b/a; parallel beta sheet, order: 2134 1wzu d1wzua1 A:58-70,104-110,113-120,121-125 36. c.1.17 Nicotinate/Quinolinate PRTase C-terminal domain-like incomplete beta/alpha barrel with parallel beta-sheet of 7 strands ! TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 1o4u d1o4ua1 A:90-116,229-236,238-247,251-256 1o4u d1o4ub1 B:90-116,229-236,238-247,251-256 1vlp d1vlpc2 C:155-171,322-327,331-346,347-355 1vlp d1vlpd2 D:155-171,322-327,331-346,347-355 1vlp d1vlpa2 A:155-171,322-327,331-346,347-355 1vlp d1vlpb2 B:155-171,322-327,331-346,347-355 1qpo d1qpob1 B:603-629,743-749,752-763,765-770 1qpo d1qpod1 D:1603-1629,1743-1749,1752-1763,1765-1770 1qpo d1qpoe1 E:2103-2129,2243-2249,2252-2263,2265-2270 1qpo d1qpof1 F:2603-2629,2743-2749,2752-2763,2765-2770 1qpn d1qpnd1 D:1603-1629,1743-1749,1752-1763,1765-1770 1qpq d1qpqd1 D:1603-1629,1743-1749,1752-1763,1765-1770 1qpn d1qpne1 E:2103-2129,2243-2249,2252-2263,2265-2270 1qpn d1qpnc1 C:1103-1129,1243-1249,1252-1263,1265-1270 1qpq d1qpqb1 B:603-629,743-749,752-763,765-770 1qpo d1qpoa1 A:103-129,243-249,252-263,265-270 1qpn d1qpnb1 B:603-629,743-749,752-763,765-770 1qpn d1qpna1 A:103-129,243-249,252-263,265-270 1qpr d1qprb1 B:103-129,243-249,252-263,265-270 1qpn d1qpnf1 F:2603-2629,2743-2749,2752-2763,2765-2770 1qpo d1qpoc1 C:1103-1129,1243-1249,1252-1263,1265-1270 1qpr d1qprd1 D:103-129,243-249,252-263,265-270 1qpq d1qpqe1 E:2103-2129,2243-2249,2252-2263,2265-2270 1qpq d1qpqf1 F:2603-2629,2743-2749,2752-2763,2765-2770 1qpq d1qpqc1 C:1103-1129,1243-1249,1252-1263,1265-1270 1qpr d1qprf1 F:103-129,243-249,252-263,265-270 1qpr d1qpre1 E:103-129,243-249,252-263,265-270 1qpq d1qpqa1 A:103-129,243-249,252-263,265-270 1qpr d1qprc1 C:103-129,243-249,252-263,265-270 1qpr d1qpra1 A:103-129,243-249,252-263,265-270 2i14 d2i14e1 E:2101-2127,2263-2268,2272-2280,2284-2290 2i14 d2i14d1 D:1501-1527,1663-1668,1672-1680,1684-1690 2i14 d2i14f1 F:2501-2527,2663-2668,2672-2680,2684-2690 2i14 d2i14a1 A:101-127,263-268,272-280,284-290 2i14 d2i14b1 B:501-527,663-668,672-680,684-690 2i14 d2i14c1 C:1101-1127,1263-1268,1272-1280,1284-1290 1ytd d1ytda1 A:105-131,265-270,274-285,287-293 2f7f d2f7fa1 A:127-153,287-293,296-307,311-316 1qap d1qapb1 B:116-142,254-259,262-273,275-280 46. c.20.1 Initiation factor IF2/eIF5b, domain 3 Initiation factor IF2/eIF5b, domain 3 3 layers, a/b/a; core: parallel beta-sheet of 4 strands, order 2134 1g7t d1g7ta3 A:329-346,353-358,359-374,378-382 1g7r d1g7ra3 A:329-346,351-358,359-374,378-382