1. c.60.1 Phosphoglycerate mutase-like Phosphoglycerate mutase-like core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 324156; strand 5 is antiparallel to the rest 2bif d2bifa2 A:249-255,372-383,383-389,417-426 2bif d2bifb2 B:249-255,372-383,383-389,417-426 1fbt d1fbtb_ B:1-7,124-134,135-141,169-178 1c80 d1c80b_ B:2-8,125-136,136-142,170-179 3bif d3bifa2 A:249-255,372-383,383-389,417-426 1c7z d1c7za_ A:2-8,125-136,136-142,170-179 1c80 d1c80a_ A:2-8,125-136,136-142,170-179 1bif d1bifa2 A:249-255,372-383,383-389,417-426 1c81 d1c81a_ A:251-257,374-384,385-391,419-427 1k6m d1k6mb2 B:251-257,374-385,385-391,419-428 1k6m d1k6ma2 A:251-257,374-385,385-391,419-428 1tip d1tipa_ A:2-8,125-136,136-142,170-179 1bq3 d1bq3c_ C:1-7,164-173,174-180,210-217 1dko d1dkoa_ A:5-17,268-281,296-302,329-342 1nt4 d1nt4b_ B:1007-1017,1262-1277,1282-1288,1318-1329 1dkq d1dkqa_ A:5-17,268-281,296-302,329-342 1dkm d1dkma_ A:5-17,268-281,296-302,329-342 1nt4 d1nt4a_ A:6-19,262-277,282-288,316-329 1bq4 d1bq4c_ C:1-7,164-173,175-180,209-217 1dkp d1dkpa_ A:5-17,268-281,296-302,329-342 1dkn d1dkna_ A:5-17,268-281,296-302,329-342 1rpt d1rpta_ A:1-12,226-245,250-256,278-290 2hpa d2hpad_ D:4001-4012,4226-4246,4250-4256,4278-4290 2hpa d2hpaa_ A:1001-1012,1226-1246,1250-1256,1278-1290 2hpa d2hpab_ B:2001-2012,2226-2246,2250-2256,2278-2290 4pgm d4pgmc_ C:1-7,164-173,175-180,210-217 2hpa d2hpac_ C:3001-3012,3226-3246,3250-3256,3278-3290 1nd6 d1nd6c_ C:2000-2011,2225-2245,2249-2255,2277-2289 4pgm d4pgmb_ B:1-7,164-173,175-180,210-217 1dkl d1dkla_ A:5-17,268-281,296-302,329-342 1nd6 d1nd6d_ D:3000-3011,3225-3245,3249-3255,3277-3289 1rpa d1rpaa_ A:1-12,226-245,250-256,278-290 1nd5 d1nd5c_ C:2000-2011,2225-2245,2249-2255,2277-2289 1nd6 d1nd6b_ B:1000-1011,1225-1245,1249-1255,1277-1289 4pgm d4pgma_ A:1-7,164-173,175-180,210-217 4pgm d4pgmd_ D:1-7,164-173,175-180,210-217 1qhf d1qhfa_ A:1-7,164-173,175-180,210-217 1nd6 d1nd6a_ A:1-12,226-246,250-256,278-290 1dkl d1dklb_ B:5-17,268-281,296-302,329-342 1bq4 d1bq4d_ D:1-7,164-173,175-180,210-217 1qhf d1qhfb_ B:1-7,164-173,175-180,210-217 1nd5 d1nd5d_ D:3000-3011,3225-3245,3249-3255,3277-3289 1ebb d1ebba_ A:2-9,122-142,143-150,180-188 5pgm d5pgma_ A:1-7,164-173,175-180,210-217 5pgm d5pgmg_ G:1-7,164-173,175-180,210-217 5pgm d5pgmd_ D:1-7,164-173,175-180,210-217 5pgm d5pgme_ E:1-7,164-173,175-180,210-217 1bq4 d1bq4b_ B:1-7,164-173,175-180,210-217 5pgm d5pgmf_ F:1-7,164-173,175-180,210-217 5pgm d5pgmc_ C:1-7,164-173,175-180,210-217 5pgm d5pgmb_ B:1-7,164-173,175-180,210-217 5pgm d5pgmh_ H:1-7,164-173,175-180,210-217 1bq3 d1bq3a_ A:1-7,164-173,175-180,210-217 1nd5 d1nd5a_ A:1-12,226-246,250-256,278-290 1bq3 d1bq3b_ B:1-7,164-173,175-180,210-217 1cvi d1cvic_ C:3001-3012,3226-3246,3250-3256,3278-3290 1bq3 d1bq3d_ D:1-7,164-173,175-180,210-217 1bq4 d1bq4a_ A:1-7,164-173,175-180,210-217 1cvi d1cvib_ B:2001-2012,2226-2246,2250-2256,2278-2290 1cvi d1cvid_ D:4001-4012,4226-4246,4250-4256,4278-4290 1cvi d1cvia_ A:1001-1012,1226-1246,1250-1256,1278-1290 1h2e d1h2ea_ A:2-10,122-142,143-150,178-188 1h2f d1h2fa_ A:2-10,122-142,143-150,178-188 1c7z d1c7zb_ B:2-8,117-135,136-142,170-179 1fbt d1fbta_ A:1-7,116-134,135-141,169-178 1tip d1tipb_ B:2-8,117-135,136-142,170-179 1v37 d1v37b_ B:1-10,109-124,127-132,152-160 2hia d2hiaa1 A:1-9,109-124,127-132,152-160 1v37 d1v37a_ A:1-10,109-124,127-132,152-160 1qfx d1qfxb_ B:51-67,284-305,311-317,357-372 1qfx d1qfxa_ A:51-67,284-305,311-317,357-372 1nd5 d1nd5b_ B:1000-1015,1224-1244,1248-1254,1276-1288 1sk8 d1sk8a1 A:47-60,286-306,331-337,380-392 1skb d1skba_ A:47-60,286-306,331-337,380-392 1qwo d1qwoa_ A:47-60,286-306,331-337,380-392 1sk9 d1sk9a_ A:47-60,286-306,331-337,380-392 1ihp d1ihpa_ A:47-64,286-306,331-337,380-392 1ska d1skaa_ A:47-60,286-306,331-337,380-392 2. c.133.1 RbsD-like RbsD-like 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 251634; strand 6 is antiparallel to the rest 1ogf d1ogfd_ D:20-29,50-63,108-115,121-128 1ogc d1ogcb_ B:20-28,50-63,108-115,121-128 1ogf d1ogfb_ B:20-28,50-63,108-115,121-128 1ogf d1ogfa_ A:20-28,50-63,108-115,121-128 1oge d1ogee_ E:20-28,50-63,108-115,121-128 1ogc d1ogce_ E:20-28,50-63,108-115,121-128 1ogf d1ogfc_ C:20-28,50-63,108-115,121-128 1ogd d1ogde_ E:20-28,50-63,108-115,121-128 1ogc d1ogca_ A:20-28,50-63,108-115,121-128 1oge d1ogea_ A:20-28,50-63,108-115,121-128 1oge d1ogeb_ B:20-28,50-63,108-115,121-128 1ogd d1ogdd_ D:20-28,50-63,108-115,121-128 1ogd d1ogdb_ B:20-28,50-63,108-115,121-128 1ogc d1ogcd_ D:20-28,50-63,108-115,121-128 1ogd d1ogdc_ C:20-28,50-63,108-115,121-128 1ogc d1ogcc_ C:20-28,50-63,108-115,121-128 1ogd d1ogda_ A:20-28,50-63,108-115,121-128 1oge d1oged_ D:20-28,50-63,108-115,121-128 2ob5 d2ob5a1 A:22-30,54-66,124-131,137-144 1oge d1ogec_ C:20-28,50-63,108-115,121-128 1ogf d1ogfe_ E:20-28,50-63,108-115,121-128 4. e.25.1 Sec1/munc18-like (SM) proteins Sec1/munc18-like (SM) proteins 3 domains: (1 and 2) alpha+beta; (3) mostly alpha, inserted in domain 2 1fvf d1fvfa_ A:184-190,192-214,224-232,500-504 1fvf d1fvfb_ B:184-190,192-214,224-232,500-504 1fvh d1fvha_ A:184-190,192-214,224-232,500-504 1epu d1epua_ A:184-190,192-214,224-232,500-504 1mqs d1mqsa_ A:214-219,222-244,259-266,582-586 5. d.320.1 YojJ-like YojJ-like alpha-beta-X-beta-alpha-beta(2)-alpha-beta(3); 3 layers: a/b/a; 7-stranded mixed beta-sheet, order 2431567; strands 1 and 3 are parallel to each other 2fb5 d2fb5a1 A:92-100,119-128,136-142,179-187 2fb5 d2fb5b1 B:92-100,119-128,136-142,179-187 2fb5 d2fb5c1 C:92-100,119-128,136-142,179-187 7. d.154.1 DmpA/ArgJ-like convergent similarity to the Ntn amidohydrolases ! DmpA/ArgJ-like duplication of beta(3)-alpha-beta-alpha motif; 4 layers: alpha/beta/beta/alpha 1vz7 d1vz7a_ A:264-272,289-299,358-367,371-379 1vz7 d1vz7a_ A:264-272,275-289,358-367,371-379 1vz8 d1vz8a_ A:264-272,275-289,358-367,371-379 1vz8 d1vz8a_ A:264-272,289-299,358-367,371-379 1vz7 d1vz7b_ B:264-272,289-299,358-367,371-379 1vz6 d1vz6a_ A:264-272,275-289,358-367,371-379 1vz6 d1vz6b_ B:264-272,275-289,358-367,371-379 1vz8 d1vz8b_ B:264-272,275-289,358-367,371-379 1vz8 d1vz8d_ D:264-272,289-299,358-367,371-379 1vz7 d1vz7b_ B:264-272,275-289,358-367,371-379 1vz6 d1vz6b_ B:264-272,289-299,358-367,371-379 1vz6 d1vz6a_ A:264-272,289-299,358-367,371-379 1vz8 d1vz8d_ D:264-272,275-289,358-367,371-379 1vz7 d1vz7c_ C:264-273,289-299,358-367,370-379 1vz8 d1vz8b_ B:264-272,289-299,358-367,371-379 1vz8 d1vz8c_ C:264-272,289-299,358-367,368-379 1vz8 d1vz8c_ C:264-272,275-289,358-367,368-379 1vz7 d1vz7c_ C:264-273,275-289,358-367,370-379 1vz7 d1vz7d_ D:264-272,275-289,358-367,368-379 1vz7 d1vz7d_ D:264-272,289-299,358-367,368-379 1vz7 d1vz7b_ B:264-272,345-358,358-367,371-379 1vz8 d1vz8d_ D:264-272,344-358,358-367,371-379 1vz6 d1vz6a_ A:264-272,344-358,358-367,371-379 1vz6 d1vz6b_ B:264-272,344-358,358-367,371-379 1vz7 d1vz7a_ A:264-272,344-358,358-367,371-379 1vz8 d1vz8a_ A:264-272,344-358,358-367,371-379 1vz8 d1vz8b_ B:264-272,344-358,358-367,371-379 1vz7 d1vz7c_ C:264-273,344-358,358-367,370-379 1vz8 d1vz8c_ C:264-272,344-358,358-367,368-379 8. c.56.6 LigB-like circular permutation of the common fold, most similar to the PNP fold ! Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops 2pw6 d2pw6a1 A:16-21,148-166,166-173,262-271 1b4u d1b4ub_ B:2-11,161-180,183-191,270-281 1b4u d1b4ud_ D:2-11,161-180,183-191,270-281 1bou d1boud_ D:2-11,161-180,183-191,270-281 1bou d1boub_ B:2-11,161-180,183-191,270-281 11. e.26.1 Prismane protein-like Prismane protein-like 3 domains: (1) spectrin repeat-like 3-helical bundle; (2 and 3) alpha/beta: Rossmann-fold topology 1mjg d1mjgb_ B:260-268,317-327,328-333,422-431 1mjg d1mjga_ A:260-268,317-327,329-333,422-431 1mjg d1mjgc_ C:260-268,317-327,329-333,422-431 1mjg d1mjgd_ D:260-268,317-327,329-333,422-431 2z8y d2z8ya1 A:260-268,317-327,328-333,422-431 2z8y d2z8yc1 C:260-268,317-327,328-333,422-431 2z8y d2z8yd1 D:260-268,317-327,328-333,422-431 1oa0 d1oa0a_ A:222-228,263-272,279-284,362-368 1gnl d1gnla_ A:222-228,263-272,279-284,362-369 1upx d1upxa_ A:222-228,263-272,279-284,362-369 1gn9 d1gn9a_ A:222-228,263-272,279-284,362-369 1gn9 d1gn9b_ B:221-228,263-272,279-284,362-369 1oa0 d1oa0b_ B:222-228,263-271,279-284,362-368 1upx d1upxb_ B:222-228,263-271,279-284,362-369 1gnl d1gnlb_ B:222-228,263-271,279-284,362-368 1oa1 d1oa1a_ A:226-232,267-275,283-288,369-376 1e1d d1e1da_ A:225-232,267-275,283-288,369-376 1e9v d1e9va_ A:225-232,267-275,283-288,369-376 1e2u d1e2ua_ A:225-232,267-275,283-288,369-376 1gnt d1gnta_ A:225-232,267-275,283-288,369-376 1w9m d1w9ma1 A:225-232,267-275,283-288,369-376 1jqk d1jqkc_ C:242-249,299-310,312-316,405-412 1jqk d1jqkf_ F:242-249,299-310,312-316,405-412 1su6 d1su6a_ A:238-245,295-305,307-311,400-407 3b52 d3b52x1 X:238-245,295-305,307-311,400-407 1su7 d1su7a_ A:238-245,295-305,307-311,400-407 1suf d1sufa_ A:238-245,295-305,307-311,400-407 3b53 d3b53x1 X:238-245,295-305,307-311,400-407 3b51 d3b51x1 X:238-245,295-305,307-311,400-407 1su8 d1su8a_ A:238-245,295-305,307-311,400-407 2z8y d2z8yb1 B:260-267,317-327,329-333,424-431 1oao d1oaob_ B:260-267,317-327,329-333,424-431 1oao d1oaoa_ A:260-267,317-327,329-333,424-431