1. i.1.1 Ribosome and ribosomal fragments
Ribosome and ribosomal fragments
1njm d1njmk_ K:33-38,102-106,110-123,125-130
1p86 d1p86e_ E:82-90,95-99,136-153,164-169
1p85 d1p85e_ E:82-90,95-99,136-153,164-169
1s1i d1s1ih_ H:85-94,99-104,150-167,177-183
2zkr d2zkre1 E:87-96,101-106,150-166,177-183
1w2b d1w2be_ E:79-88,93-99,137-153,164-172
1sm1 d1sm1e_ E:84-90,94-98,137-153,160-164
2. d.41.4 Ribosomal protein L16p/L10e
alpha/beta-Hammerhead core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
2zjp d2zjpj1 J:32-39,104-108,111-126,128-135
2zjq d2zjqj1 J:32-39,104-108,111-126,128-135
2zjr d2zjrj1 J:32-39,104-108,111-126,128-135
3cf5 d3cf5j1 J:33-39,104-108,111-126,128-134
3. d.344.1 PriA/YqbF domain associated with known or presumed DNA-binding domains; this superfamily also includes the C-terminal domain of PriA (PDB entry 1zt2)
GINS/PriA/YqbF domain beta(4)-alpha-beta; 3-stranded antiparallel beta-sheet (strands 4,1 and 5) are covered on the same side by the helix and beta hairpin of strands 2 and 3; similarity to the L9 N-domain-like fold (scop_cf 55657) and the PsaD fold (scop_sf 64243)
2hjq d2hjqa2 A:1-8,10-15,28-39,40-46
2e9x d2e9xd2 D:169-177,176-186,211-218,219-223
2e9x d2e9xh2 H:169-177,176-181,207-218,219-223
2e9x d2e9xb2 B:14-20,20-25,45-56,57-61
2q9q d2q9qe2 E:14-20,20-25,45-56,57-61
2eho d2ehoc2 C:14-20,20-25,45-56,57-61
4. d.58.1 4Fe-4S ferredoxins
Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
1siz d1sizc_ C:1-7,31-36,42-56,60-66
1siz d1siza_ A:1-7,31-36,42-56,60-66
1sj1 d1sj1b_ B:1-7,31-36,42-56,60-66
1sj1 d1sj1a_ A:1-7,31-36,42-56,60-66
1fxd d1fxda_ A:1-5,30-34,40-51,54-58
1xer d1xera_ A:37-42,72-79,87-94,97-101
1ftc d1ftcb_ B:1-5,30-35,43-50,53-57
1gao d1gaoc_ C:401-405,430-435,443-450,453-457
1ftc d1ftca_ A:1-5,30-35,43-50,53-57
2fug d2fugg1 G:39-44,85-95,101-108,112-117
2fug d2fugy1 Y:39-44,85-95,101-108,112-117
1fri d1fria_ A:1-5,30-35,43-50,53-57
2fug d2fugp1 P:39-44,85-95,101-108,112-117
1vjw d1vjwa_ A:2-6,30-35,41-51,55-59
1fdd d1fdda_ A:1-5,30-35,43-50,53-57
6fdr d6fdra_ A:1-5,30-35,43-50,53-57
7fd1 d7fd1a_ A:1-5,30-35,43-50,53-57
1pc4 d1pc4a_ A:1-5,30-35,43-50,53-57
6fd1 d6fd1a_ A:1-5,30-35,43-50,53-57
1fdb d1fdba_ A:1-5,30-35,43-50,53-57
1frj d1frja_ A:1-5,30-35,43-50,53-57
1pc5 d1pc5a_ A:1-5,30-35,43-50,53-57
7fdr d7fdra_ A:1-5,30-35,43-50,53-57
1frh d1frha_ A:1-5,30-35,43-50,53-57
1fer d1fera_ A:1-5,30-35,43-50,53-57
1gao d1gaoa_ A:1-5,30-35,43-50,53-57
1frl d1frla_ A:1-5,30-35,43-50,53-57
2fd2 d2fd2a_ A:1-5,30-35,43-50,53-57
1b0t d1b0ta_ A:1-5,30-35,43-50,53-57
1fd2 d1fd2a_ A:1-5,30-35,43-50,53-57
1frk d1frka_ A:1-5,30-35,43-50,53-57
1ff2 d1ff2a_ A:1-5,30-35,43-50,53-57
1h98 d1h98a_ A:1-5,30-35,43-50,53-57
1axq d1axqa_ A:1-5,30-35,43-50,53-57
1fda d1fdaa_ A:1-5,30-35,43-50,53-57
1bd6 d1bd6a_ A:1-5,30-35,42-50,53-57
5fd1 d5fd1a_ A:1-5,30-35,43-50,53-57
1d3w d1d3wa_ A:1-5,30-35,43-50,53-57
1a6l d1a6la_ A:1-5,30-35,43-50,53-57
1frm d1frma_ A:1-5,30-35,43-50,53-57
1frx d1frxa_ A:1-5,30-35,43-50,53-57
1g3o d1g3oa_ A:1-5,30-35,43-50,53-57
1g6b d1g6ba_ A:1-5,30-35,43-50,53-57
1b0v d1b0va_ A:1-5,30-35,43-50,53-57
1f5c d1f5ca_ A:1-5,30-35,43-50,53-57
1b0v d1b0vd_ D:601-605,630-635,643-650,653-657
1b0v d1b0vc_ C:401-405,430-435,443-450,453-457
1gao d1gaod_ D:601-605,630-635,643-650,653-657
1b0v d1b0vb_ B:201-205,230-235,243-250,253-257
1f5b d1f5ba_ A:1-5,30-35,43-50,53-57
1ir0 d1ir0a_ A:2-7,31-36,47-62,65-70
1bc6 d1bc6a_ A:1-5,30-35,43-50,53-57
1iqz d1iqza_ A:2-7,31-36,47-61,65-70
1wtf d1wtfb1 B:2-7,31-36,47-62,65-70
1wtf d1wtfa1 A:2-7,31-36,47-61,65-70
1wtf d1wtfd1 D:2-7,31-36,47-62,65-70
1wtf d1wtfc1 C:2-7,31-36,47-62,65-70
2v4j d2v4ja1 A:241-247,294-299,307-314,316-322
2v4j d2v4jd1 D:241-247,294-299,307-314,316-322
2fjd d2fjdd1 D:2702-2706,2736-2742,2751-2758,2761-2765
2fjb d2fjbd1 D:2702-2706,2736-2742,2751-2758,2761-2765
2fje d2fjed1 D:2702-2706,2736-2742,2751-2758,2761-2765
1jnz d1jnzb_ B:702-706,736-742,751-758,761-765
1fxr d1fxra_ A:3-7,32-37,43-54,58-62
1fxr d1fxrb_ B:3-7,31-37,43-54,58-62
5. d.141.1 Ribosomal protein L6
Ribosomal protein L6 consists of two beta-sheets and one alpha-helix packed around single core
1vqn d1vqne2 E:79-88,93-99,137-153,164-172
1yit d1yite2 E:79-88,93-99,137-153,164-172
1s72 d1s72e2 E:79-88,93-99,137-153,164-172
1m1k d1m1kg2 G:79-88,93-99,137-153,164-172
1vqm d1vqme2 E:79-88,93-99,137-153,164-172
1k9m d1k9mg2 G:79-88,93-99,137-153,164-172
1m90 d1m90g2 G:79-88,93-99,137-153,164-172
1jj2 d1jj2e2 E:79-88,93-99,137-153,164-172
1n8r d1n8rg2 G:79-88,93-99,137-153,164-172
1k8a d1k8ag2 G:79-88,93-99,137-153,164-172
1vqk d1vqke2 E:79-88,93-99,137-153,164-172
1vql d1vqle2 E:79-88,93-99,137-153,164-172
1k73 d1k73g2 G:79-88,93-99,137-153,164-172
1qvf d1qvfe2 E:79-88,93-99,137-153,164-172
1kc8 d1kc8g2 G:79-88,93-99,137-153,164-172
1nji d1njig2 G:79-88,93-99,137-153,164-172
1vq9 d1vq9e2 E:79-88,93-99,137-153,164-172
1vqp d1vqpe2 E:79-88,93-99,137-153,164-172
1yjw d1yjwe2 E:79-88,93-99,137-153,164-172
1q82 d1q82g2 G:79-88,93-99,137-153,164-172
1kd1 d1kd1g2 G:79-88,93-99,137-153,164-172
1kqs d1kqse2 E:79-88,93-99,137-153,164-172
1yhq d1yhqe2 E:79-88,93-99,137-153,164-172
1yjn d1yjne2 E:79-88,93-99,137-153,164-172
1yij d1yije2 E:79-88,93-99,137-153,164-172
1q86 d1q86g2 G:79-88,93-99,137-153,164-172
1vq8 d1vq8e2 E:79-88,93-99,137-153,164-172
2otj d2otje2 E:79-88,93-99,137-153,164-172
1vqo d1vqoe2 E:79-88,93-99,137-153,164-172
1q81 d1q81g2 G:79-88,93-99,137-153,164-172
1q7y d1q7yg2 G:79-88,93-99,137-153,164-172
1yi2 d1yi2e2 E:79-88,93-99,137-153,164-172
1ffk d1ffk12 1:79-88,93-99,137-153,164-172
1yj9 d1yj9e2 E:79-88,93-99,137-153,164-172
1qvg d1qvge2 E:79-88,93-99,137-153,164-172
1vq7 d1vq7e2 E:79-88,93-99,137-153,164-172
1vq5 d1vq5e2 E:79-88,93-99,137-153,164-172
1vq6 d1vq6e2 E:79-88,93-99,137-153,164-172
1vq4 d1vq4e2 E:79-88,93-99,137-153,164-172
2otl d2otle2 E:79-88,93-99,137-153,164-172
2j03 d2j03h2 H:82-90,94-100,137-153,160-165
2j01 d2j01h2 H:82-90,94-100,137-153,160-165
2qox d2qoxg2 G:81-90,93-99,136-152,159-164
2qov d2qovg2 G:81-90,93-99,136-152,159-164
3dll d3dlle1 E:85-90,94-100,137-153,161-165
2v49 d2v49h2 H:83-90,94-100,137-153,160-165
2v47 d2v47h2 H:83-90,94-100,137-153,160-165
2hgu d2hguh2 H:85-91,94-100,137-153,160-164
2vhm d2vhmg2 G:81-90,92-99,136-152,157-164
1yl3 d1yl3h2 H:81-90,93-99,136-152,159-164
3cf5 d3cf5e1 E:85-91,94-100,137-153,160-164
2i2v d2i2vg2 G:81-89,93-99,136-152,160-164
2i2t d2i2tg2 G:81-89,93-99,136-152,160-164
3d5d d3d5dh2 H:82-91,94-100,137-153,160-165
3d5b d3d5bh2 H:82-91,94-100,137-153,160-165
2qam d2qamg2 G:83-89,93-99,136-152,157-164
2hgq d2hgqh2 H:86-91,94-98,137-153,160-164
2qao d2qaog2 G:83-89,93-99,136-152,157-164
1vs8 d1vs8g2 G:81-90,93-99,136-152,158-164
1vs6 d1vs6g2 G:81-90,93-99,136-152,157-164
2hgj d2hgjh2 H:85-91,93-100,137-153,160-165
3df4 d3df4g2 G:81-90,94-99,136-152,157-164
3df2 d3df2g2 G:81-90,94-99,136-152,157-164
2qbe d2qbeg2 G:81-90,93-99,136-152,157-164
2qbg d2qbgg2 G:81-90,93-99,136-152,157-164
3bbx d3bbxg2 G:81-89,93-99,136-152,157-164
2rdo d2rdog2 G:81-89,93-99,136-152,157-164
2aw4 d2aw4g2 G:81-89,93-99,136-152,157-164
2zjr d2zjre1 E:85-91,94-100,137-153,158-164
2zjp d2zjpe1 E:85-91,94-100,137-153,158-164
2j28 d2j28g2 G:81-90,93-99,136-152,157-164
2awb d2awbg2 G:81-90,93-99,136-152,157-164
2vhn d2vhng2 G:81-90,93-99,136-152,157-164
6. c.1.8 (Trans)glycosidases
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1rd6 d1rd6a2 A:151-156,159-164,545-557,557-561
1x6n d1x6na2 A:151-156,159-165,545-557,557-561
1x6l d1x6la2 A:151-156,159-165,545-557,557-561
1ffr d1ffra2 A:151-156,159-165,545-557,557-561
1eib d1eiba2 A:151-156,159-165,545-557,557-561
1ehn d1ehna2 A:151-156,160-165,545-557,557-561
1k9t d1k9ta2 A:151-156,160-165,545-557,557-561
1nh6 d1nh6a2 A:151-156,160-165,545-557,557-561
7. d.142.1 Glutathione synthetase ATP-binding domain-like
ATP-grasp Consists of two subdomains with different alpha+beta folds ! shares functional and structural similarities with the PIPK and protein kinase superfamilies
2fpg d2fpgb2 B:42-48,62-66,72-85,102-108
2fpi d2fpib2 B:42-48,62-66,72-85,102-108
8. d.100.1 L9 N-domain-like
MbtH/L9 domain-like beta(2)-alpha-beta-alpha; 3 layers: alpha/beta/alpha
2qoz d2qozh2 H:1-7,6-10,22-34,35-39
2qp1 d2qp1h2 H:1-7,6-10,22-34,35-39
2hba d2hbaa1 A:1-7,6-10,22-34,35-39
3df4 d3df4h2 H:1-7,6-10,25-34,35-39
9. d.16.1 FAD-linked reductases, C-terminal domain N-terminal domain is beta/beta/alpha common fold !
FAD-linked reductases, C-terminal domain alpha+beta sandwich
1pn0 d1pn0a3 A:254-258,274-282,308-321,324-328
1foh d1fohd4 D:254-258,274-282,308-321,324-328
1foh d1fohc4 C:254-258,274-282,308-321,324-328
1foh d1foha4 A:254-258,274-282,308-321,324-328
1pn0 d1pn0c3 C:254-258,274-282,308-321,324-328
1foh d1fohb4 B:254-258,274-282,308-321,324-328
1pn0 d1pn0b3 B:254-258,274-282,308-321,324-328
1pn0 d1pn0d3 D:254-258,274-282,308-321,324-328
10. e.29.1 beta and beta-prime subunits of DNA dependent RNA-polymerase The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit !
beta and beta-prime subunits of DNA dependent RNA-polymerase Multidomain subunits of complex domain organization
3dxj d3dxjn1 N:132-137,139-143,154-164,452-456
2nvq d2nvqa1 A:1114-1119,1138-1142,1312-1319,1326-1330
1twf d1twfa_ A:1114-1119,1138-1142,1312-1319,1326-1330
11. b.34.2 SH3-domain
SH3-like barrel barrel, partly opened; n*=4, S*=8; meander ! the last strand is interrupted by a turn of 3-10 helix
1vyu d1vyua1 A:61-68,67-73,120-134,170-174
1vyu d1vyub1 B:61-68,67-73,120-136,170-174
12. d.142.2 DNA ligase/mRNA capping enzyme, catalytic domain has a circularly permuted topology !
ATP-grasp Consists of two subdomains with different alpha+beta folds ! shares functional and structural similarities with the PIPK and protein kinase superfamilies
1s68 d1s68a_ A:29-35,114-126,134-146,151-157
1tae d1taed_ D:114-122,222-233,239-251,258-262
1ckm d1ckmb2 B:76-84,183-188,195-210,211-220
1dgs d1dgsa3 A:109-117,216-225,236-248,254-260
1dgs d1dgsb3 B:2109-2117,2216-2225,2236-2248,2254-2260
1v9p d1v9pa3 A:111-120,221-230,239-251,257-263
1ta8 d1ta8a_ A:114-122,222-230,239-251,258-262
1v9p d1v9pb3 B:2111-2120,2221-2230,2239-2251,2257-2263
1b04 d1b04b_ B:108-116,216-224,233-245,252-256
1b04 d1b04a_ A:108-116,216-224,233-245,252-256
2q2t d2q2ta2 A:20-28,92-101,108-124,139-144
1p8l d1p8la2 A:21-27,92-101,108-124,139-143
2q2u d2q2ud2 D:20-28,92-101,108-124,139-144
2q2u d2q2ub2 B:20-28,92-101,108-124,139-144
2q2u d2q2ua2 A:20-28,92-101,108-124,139-144
2q2u d2q2uc2 C:20-28,92-101,108-124,139-144
1fvi d1fvia2 A:20-28,92-101,108-124,139-144
13. d.41.2 Nicotinate/Quinolinate PRTase N-terminal domain-like
alpha/beta-Hammerhead core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
1o4u d1o4ua2 A:30-41,40-45,90-116,265-272
1o4u d1o4ub2 B:30-41,40-45,90-116,265-272
1ytd d1ytda2 A:36-46,51-55,105-131,301-311
14. d.96.1 Tetrahydrobiopterin biosynthesis enzymes-like bind purine or pterin in topologically similar sites between subunits !
T-fold beta(2)-alpha(2)-beta(2); 2 layers: alpha/beta; antiparallel sheet 1234 ! tunnel-shaped: its known members form wide oligomeric barrels different sizes
1is8 d1is8e_ E:135-150,151-155,172-189,189-201
1wur d1wurd1 D:111-126,127-131,148-165,165-177
1wuq d1wuqd1 D:111-126,127-131,148-165,165-177
1is7 d1is7h_ H:135-149,151-155,172-189,190-202
1is7 d1is7e_ E:135-149,151-155,172-189,190-202
1is7 d1is7d_ D:135-149,151-155,172-189,190-202
1is7 d1is7b_ B:135-149,151-155,172-189,190-202
1wm9 d1wm9d1 D:111-126,127-131,148-165,165-178
1wuq d1wuqa1 A:111-125,127-131,148-165,166-177
1fb1 d1fb1e_ E:144-158,160-164,181-198,199-209
1n3s d1n3sa_ A:113-127,129-133,150-167,170-179
1wur d1wurb1 B:111-125,127-131,148-165,166-177
1n3s d1n3sd_ D:113-127,129-133,150-167,170-179
1wuq d1wuqe1 E:111-125,127-131,148-165,166-177
1wur d1wure1 E:111-125,127-131,148-165,166-177
1n3s d1n3sb_ B:113-127,129-133,150-167,170-179
1fb1 d1fb1d_ D:144-158,160-164,181-198,199-211
1wuq d1wuqb1 B:111-125,127-131,148-165,166-178
1wur d1wura1 A:111-125,127-131,148-165,166-178
1wm9 d1wm9a1 A:111-125,127-131,148-165,166-178
1wm9 d1wm9b1 B:111-125,127-131,148-165,166-178
1wuq d1wuqc1 C:111-125,127-131,148-165,166-178
1wm9 d1wm9e1 E:111-125,127-131,148-165,166-178
1wur d1wurc1 C:111-125,127-131,148-165,166-178
1a8r d1a8rd_ D:113-127,129-133,150-167,170-179
1a8r d1a8rb_ B:113-127,129-133,150-167,170-179
1a8r d1a8rj_ J:113-127,129-133,150-167,170-179
1a8r d1a8rg_ G:113-127,129-133,150-167,170-179
1a8r d1a8ro_ O:113-127,129-133,150-167,170-179
1a8r d1a8rn_ N:113-127,129-133,150-167,170-179
1a8r d1a8rk_ K:113-127,129-133,150-167,170-179
1a8r d1a8ra_ A:113-127,129-133,150-167,170-179
1wm9 d1wm9c1 C:111-125,127-131,148-165,166-178
1a8r d1a8ri_ I:113-127,129-133,150-167,170-180
1a8r d1a8rm_ M:113-127,129-133,150-167,170-180
1a8r d1a8re_ E:113-127,129-133,150-167,170-180
1a8r d1a8rf_ F:113-127,129-133,150-167,170-180
1a8r d1a8rh_ H:113-127,129-133,150-167,170-180
1n3s d1n3se_ E:113-126,129-133,150-167,170-179
1n3s d1n3sh_ H:113-126,129-133,150-167,170-179
1n3s d1n3si_ I:113-126,129-133,150-167,170-179
1n3s d1n3sg_ G:113-126,129-133,150-167,170-179
1n3t d1n3tm_ M:113-126,129-133,150-167,170-179
1n3s d1n3sj_ J:113-126,129-133,150-167,170-180
1n3r d1n3rb_ B:113-126,129-133,150-167,170-179
1n3t d1n3to_ O:113-126,129-133,150-167,170-180
1n3t d1n3tn_ N:113-126,129-133,150-167,170-180
1a9c d1a9cf_ F:113-126,129-133,150-167,170-180
1a9c d1a9cd_ D:113-126,129-133,150-167,170-180
1a8r d1a8rc_ C:113-126,129-133,150-167,170-179
1n3s d1n3sc_ C:113-126,129-133,150-167,170-180
1a9c d1a9cj_ J:113-126,129-133,150-167,170-180
1a9c d1a9cl_ L:113-126,129-133,150-167,170-180
1a9c d1a9cb_ B:113-126,129-133,150-167,170-180
1a9c d1a9ca_ A:113-126,129-133,150-167,170-180
1n3t d1n3tb_ B:113-126,129-133,150-167,170-180
1a9c d1a9cm_ M:113-126,129-133,150-167,170-180
1n3s d1n3sf_ F:113-126,129-133,150-167,170-180
1a9c d1a9ck_ K:113-126,129-133,150-167,170-180
1fbx d1fbxc_ C:113-126,129-133,150-167,170-179
1a9c d1a9cc_ C:113-126,129-133,150-167,170-180
1a9c d1a9ce_ E:113-126,129-133,150-167,170-180
1fbx d1fbxn_ N:113-126,129-133,150-167,170-178
1a9c d1a9ch_ H:113-126,129-133,150-167,170-180
1a9c d1a9cn_ N:113-126,129-133,150-167,170-180
1a9c d1a9ci_ I:113-126,129-133,150-167,170-180
1n3t d1n3tf_ F:113-126,129-133,150-167,170-180
1n3r d1n3ra_ A:113-126,129-133,150-167,170-180
1n3r d1n3ro_ O:113-126,129-133,150-167,170-180
1a9c d1a9cg_ G:113-126,129-133,150-167,170-180
1a9c d1a9co_ O:113-126,129-133,150-167,170-180
1n3r d1n3rf_ F:113-126,129-133,150-167,170-180
1n3t d1n3tk_ K:113-126,129-133,150-167,170-180
1n3t d1n3te_ E:113-126,129-133,150-167,170-180
1n3t d1n3ta_ A:113-126,129-133,150-167,170-180
1n3t d1n3ti_ I:113-126,129-133,150-167,170-180
1n3r d1n3rh_ H:113-126,129-133,150-167,170-180
1gtp d1gtpl_ L:113-126,129-133,150-167,170-180
1n3r d1n3rk_ K:113-126,129-133,150-167,170-180
1n3r d1n3rg_ G:113-126,129-133,150-167,170-180
1n3t d1n3td_ D:113-126,129-133,150-167,170-180
1n3r d1n3rj_ J:113-126,129-133,150-167,170-180
1n3r d1n3rc_ C:113-126,129-133,150-167,170-180
1a8r d1a8rl_ L:113-126,129-133,150-167,170-180
1fbx d1fbxi_ I:113-126,129-133,150-167,170-180
1gtp d1gtpc_ C:113-126,129-133,150-167,170-180
1fbx d1fbxh_ H:113-126,129-133,150-167,170-180
1n3r d1n3ri_ I:113-126,129-133,150-167,170-180
1gtp d1gtpf_ F:113-126,129-133,150-167,170-180
1gtp d1gtpa_ A:113-126,129-133,150-167,170-180
1gtp d1gtpr_ R:113-126,129-133,150-167,170-180
1fbx d1fbxo_ O:113-126,129-133,150-167,170-180
1gtp d1gtpo_ O:113-126,129-133,150-167,170-180
1gtp d1gtpj_ J:113-126,129-133,150-167,170-180
1n3t d1n3tc_ C:113-126,129-133,150-167,170-180
1gtp d1gtpn_ N:113-126,129-133,150-167,170-180
1n3r d1n3rl_ L:113-126,129-133,150-167,170-180
1fbx d1fbxa_ A:113-126,129-133,150-167,170-180
1gtp d1gtpp_ P:113-126,129-133,150-167,170-180
1gtp d1gtpb_ B:113-126,129-133,150-167,170-180
1fbx d1fbxg_ G:113-126,129-133,150-167,170-180
1fbx d1fbxb_ B:113-126,129-133,150-167,170-180
1gtp d1gtpd_ D:113-126,129-133,150-167,170-180
1gtp d1gtph_ H:113-126,129-133,150-167,170-180
1gtp d1gtpg_ G:113-126,129-133,150-167,170-180
1gtp d1gtpe_ E:113-126,129-133,150-167,170-180
1gtp d1gtpt_ T:113-126,129-133,150-167,170-180
1gtp d1gtpq_ Q:113-126,129-133,150-167,170-180
1n3r d1n3re_ E:113-126,129-133,150-167,170-180
1fbx d1fbxe_ E:113-126,129-133,150-167,170-180
1gtp d1gtpm_ M:113-126,129-133,150-167,170-180
1gtp d1gtpk_ K:113-126,129-133,150-167,170-180
1gtp d1gtpi_ I:113-126,129-133,150-167,170-180
1fbx d1fbxd_ D:113-126,129-133,150-167,170-180
1n3t d1n3tg_ G:113-126,129-133,150-167,170-180
1gtp d1gtps_ S:113-126,129-133,150-167,170-180
1n3r d1n3rn_ N:113-126,129-133,150-167,170-180
1n3t d1n3tl_ L:113-126,129-133,150-167,170-180
1n3r d1n3rm_ M:113-126,129-133,150-167,170-180
1fbx d1fbxf_ F:113-126,129-133,150-167,170-180
1fbx d1fbxj_ J:113-126,129-133,150-167,170-180
1n3r d1n3rd_ D:113-126,129-133,150-167,170-180
1n3t d1n3th_ H:113-126,129-133,150-167,170-180
1fbx d1fbxk_ K:113-126,129-133,150-167,170-180
1fbx d1fbxl_ L:113-126,129-133,150-167,170-180
1n3t d1n3tj_ J:113-126,129-133,150-167,170-180
1fbx d1fbxm_ M:113-126,129-133,150-167,170-180
15. d.225.1 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains duplication: the N- and C-terminal halves of the whole proteins are structurally similar !
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Intertwined pseudo hexamer of an alpha+beta motif
1oy6 d1oy6a5 A:180-188,236-240,242-249,266-274
1oye d1oyea5 A:180-188,236-240,242-249,266-274
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 98 (enumeration index: query128) of S4
2icf A:2-10,505-517,612-621,621-627
2r5i E:153-161,164-172,233-240,247-259
2r5i G:153-161,164-172,233-240,247-259
2r5i N:153-161,164-172,233-240,246-259
2r5i O:153-161,164-172,233-240,246-259
2r5i D:153-161,164-172,233-240,247-259
2r5i I:153-161,164-172,233-241,247-259
2r5i M:153-161,164-172,233-241,246-259
2r5i B:153-161,164-172,233-240,247-259
2r5i L:153-161,164-172,233-241,246-259
2r5i K:153-161,164-172,233-240,247-259
2r5i C:153-161,164-172,233-240,247-259
2r5i A:153-161,164-172,233-240,247-259
2r5i H:153-161,164-172,233-240,247-259
2r5i J:153-161,164-172,233-240,247-259
2r5i F:153-161,164-172,233-240,247-259
2hvr A:29-36,114-126,134-146,151-157
2hvr B:29-35,114-126,134-146,151-157
2r5j L:153-161,164-172,233-240,245-259
2r5j A:153-161,164-172,233-240,245-259
2r5j B:153-161,164-172,233-240,245-259
2r5j N:153-161,164-172,233-240,245-259
2r5j I:153-161,164-172,233-240,245-259
2r5j E:152-161,164-172,233-240,245-256
2r5j J:153-161,164-172,233-240,245-259
2r5j K:153-161,164-172,233-240,247-259
2r5j G:153-161,164-172,233-240,245-259
2r5j M:153-161,164-172,233-240,245-259
2r5j C:153-161,164-172,233-240,245-259
2r5j D:153-161,164-172,233-240,245-259
2r5j F:153-161,164-172,233-240,247-259
2r5j O:152-161,164-172,233-240,247-256
2r5j H:153-161,164-172,233-240,245-259
2kr2 A:10-16,19-24,54-63,167-175
3i01 O:383-393,425-432,440-457,459-470
3kir H:82-91,94-100,137-153,160-164
3bab A:114-122,222-233,239-251,258-262
3k7a A:1114-1119,1138-1142,1312-1320,1326-1330
3fin H:82-90,94-100,137-153,160-165
3g4s E:79-88,93-99,137-153,164-172
2pa8 D:168-173,193-199,207-214,216-221
3lwb B:248-260,265-269,272-279,282-287
2cfm A:243-250,333-345,353-366,375-380
3mrz H:1-7,6-10,22-34,35-39
3mrz G:82-91,94-100,137-153,160-165
3oi3 I:1-7,6-10,22-34,35-39
3oi3 H:83-90,94-100,137-153,160-165
3jyw H:87-95,99-104,150-166,176-182
3ofq G:81-90,93-99,136-152,158-164
3i1p G:83-90,93-99,136-152,158-164
2hr0 A:2-10,476-486,612-621,621-627
2hr0 A:2-10,505-518,612-621,621-627
3lh5 A:518-525,524-529,576-588,632-640
2x9s H:82-91,94-100,137-153,160-164
2y0z H:85-91,94-100,137-153,160-164
2w8i H:89-98,132-136,140-153,160-170
2w8i G:89-98,132-136,140-153,160-170
2w8i D:89-98,132-136,140-153,160-170
2w8i C:89-98,132-136,140-153,160-170
2w8i E:89-98,132-136,140-153,160-170
2w8i A:89-98,132-136,140-153,160-170
2w8i B:89-98,132-136,140-153,160-170
2w8i F:89-98,132-136,140-153,160-170
2eb5 A:102-115,114-118,123-131,131-143
2eb5 C:102-115,114-118,123-131,131-143
2eb5 D:102-115,114-118,123-131,131-143
2eb5 E:102-115,114-118,123-131,131-143
2eb5 B:102-115,114-118,123-131,131-143
1vt2 G:83-89,92-99,136-152,158-164
2r5h K:152-161,164-172,233-240,245-256
2r5h H:152-161,164-172,233-240,247-256
2r5h E:152-161,164-172,233-240,247-256
2r5h F:153-161,164-172,233-240,247-259
2r5h J:153-161,164-172,233-240,245-259
2r5h C:153-161,164-172,233-240,245-259
2r5h M:153-161,164-172,233-240,245-259
2r5h D:152-161,164-172,233-240,244-256
2r5h G:152-161,164-172,233-240,247-256
2r5h N:152-161,164-172,233-240,244-256
2r5h L:152-161,164-172,233-240,245-256
3ofc G:81-90,93-99,136-152,157-163
3oa5 A:379-385,408-412,418-427,456-462
3oa5 B:379-385,408-412,418-427,456-462
3or1 D:243-247,294-299,307-314,316-320
3or1 A:241-247,294-299,307-314,316-322
3jsl B:106-114,214-222,231-243,250-254
3jsl A:106-114,214-222,231-243,250-254
2z8q B:1-7,31-36,42-56,60-66
2z8q A:1-7,31-36,42-56,60-66
3ohj H:82-90,94-100,137-153,160-164
3ohj I:1-7,6-10,22-34,35-39
2xqe H:82-91,94-100,137-153,160-164
3izx B:1077-1081,1136-1142,1148-1163,1224-1230
3mmb A:239-245,276-281,289-296,298-304
3ofr G:81-90,93-99,136-152,157-163
3og0 G:83-89,93-99,136-152,158-164
4a3c A:1114-1119,1138-1142,1312-1319,1326-1330
2i1o A:36-46,51-55,105-131,301-311
3e1b Z:28-37,47-53,175-195,199-208
3hcq A:110-124,147-153,182-197,200-206
2y15 H:83-91,94-100,137-153,160-164
3ofz G:81-90,93-99,136-152,157-163
2hvq A:29-35,114-126,134-146,151-157
3izu H:81-90,92-99,136-152,160-164
2y19 H:85-91,94-100,137-153,160-164
2y17 H:83-91,94-100,137-153,160-164
2ajg A:228-235,307-313,391-407,408-413
2wh2 H:81-91,95-100,137-153,160-164
2wh2 I:1-7,6-10,22-34,35-39
2xwj C:2-10,505-517,612-621,621-627
3r8s G:81-90,93-99,136-152,157-164
3km9 B:22-29,507-517,641-650,650-655
3ofd G:83-90,93-99,136-152,158-164
3oi1 H:82-91,94-100,137-153,160-164
2eb6 E:102-115,114-118,123-131,131-143
2eb6 C:102-115,114-118,123-131,131-143
2eb6 D:102-115,114-118,123-131,131-143
2eb6 A:102-115,114-118,123-131,131-143
2eb6 B:102-115,114-118,123-131,131-143
3c1y B:35-44,52-56,106-120,120-129
3c1y A:36-44,52-56,106-120,120-128
3s15 A:1114-1119,1138-1142,1312-1319,1326-1330
3rzp A:74-86,90-94,112-129,132-138
3rzp D:74-87,90-94,112-129,132-138
3rzp C:74-87,90-94,112-129,132-138
3rzp B:74-87,90-94,112-129,132-138
3i8i H:82-91,94-100,137-152,160-165
4a5q D:379-385,408-412,418-427,456-462
4a5q B:379-385,408-412,418-427,456-462
4a5q A:379-385,408-412,418-427,456-462
4a5q C:379-385,408-412,418-427,456-462
4a5q E:379-385,408-412,418-427,456-462
2y0x H:85-91,94-100,137-153,160-164
2aji A:228-235,307-313,391-407,408-413
3p7e A:290-297,302-306,321-332,336-345
3oi5 H:83-90,94-100,137-153,160-165
3l2p A:415-421,500-514,522-534,546-550
3i1t G:83-90,93-99,136-152,158-164
3nxn A:95-100,121-129,191-198,198-203
3s19 A:74-86,90-94,112-129,132-138
3s19 D:74-86,90-94,112-129,132-138
3s19 C:74-86,90-94,112-129,132-138
3s19 B:74-86,90-94,112-129,132-138
3kiw H:82-91,94-100,137-153,160-164
3kiw I:1-7,6-10,22-34,35-39
3f1f H:82-91,94-100,137-153,160-164
3r8t G:81-90,93-99,136-152,157-164
2y13 H:82-91,94-100,137-153,160-164
2x9u I:1-7,6-10,22-34,35-39
2x9u H:82-91,94-100,137-153,160-164
3poy A:504-511,512-517,678-687,690-694
3ohz H:82-91,94-100,137-153,160-164
3qcw B:488-492,496-502,662-671,674-678
3qcw A:488-492,496-502,662-671,674-678
3i56 E:79-88,93-99,137-153,164-172
3oae B:153-161,164-172,233-240,247-259
3oae D:153-161,164-172,233-240,247-259
3oae C:153-161,164-172,233-240,247-259
3oae E:153-161,164-172,233-240,247-259
3oae A:153-161,164-172,233-240,247-259
2wrl H:87-91,94-100,137-153,160-164
3ms1 H:1-7,6-10,22-34,35-39
3ms1 G:82-91,94-100,137-153,160-165
1zau A:116-125,231-243,248-260,266-271
3knm I:1-6,6-10,22-34,35-39
3pio E:82-91,94-100,137-153,158-165
3or2 A:243-247,294-299,307-314,316-320
3or2 D:243-247,294-299,307-314,316-320
3emr A:140-147,188-194,215-227,247-253
3ohk H:82-90,94-100,137-153,160-164
3gtp A:1114-1119,1138-1142,1312-1319,1326-1330
3c1z A:36-44,52-56,106-120,120-128
3bfn A:84-90,337-346,351-363,364-369
3bfn A:84-90,91-96,351-363,364-369
3kiy H:82-91,94-100,137-153,160-164
3kiy I:1-7,6-10,22-34,35-39
2y0v H:85-91,94-100,137-153,160-164
2gh8 C:217-224,270-274,276-283,315-324
2gh8 C:260-269,270-274,276-283,284-289
3rj4 A:74-86,90-94,112-129,132-138
3rj4 B:74-86,90-94,112-129,132-138
3o58 I:85-93,99-107,150-166,178-187
3cu7 B:22-29,507-517,641-650,650-655
3cu7 A:22-29,507-517,641-650,650-655
2ql3 F:175-181,202-206,233-244,262-269
2w8h D:89-98,132-136,140-153,160-170
2w8h G:89-98,132-136,140-153,160-170
2w8h H:89-98,132-136,140-153,160-170
2w8h B:89-98,132-136,140-153,160-170
2w8h E:89-98,132-136,140-153,160-170
2w8h F:89-98,132-136,140-153,160-170
2w8h C:89-98,132-136,140-153,160-170
2w8h A:89-98,132-136,140-153,160-170
1yte A:36-46,51-55,105-131,301-311
3kni H:82-91,94-100,137-153,160-164
3rzq A:74-86,90-94,112-129,132-138
3rzq B:74-87,90-94,112-129,132-138
3gto A:1114-1119,1138-1142,1312-1319,1326-1330
1ytk A:36-46,51-55,102-131,301-311
3jsn A:106-114,214-223,231-243,250-254
3i1n G:81-90,93-99,136-152,157-163
3qwu A:71-78,148-159,166-178,183-189
3qwu B:71-78,148-159,166-178,183-189
2ice A:2-10,505-517,612-621,621-628
2wdn H:82-91,94-100,137-153,160-164
2ajh A:228-235,307-313,391-407,408-413
3i04 O:383-393,424-431,440-457,459-470
3ias G:39-44,85-95,102-109,112-117
3ias Y:39-44,85-95,102-109,112-117
3ias P:39-44,85-95,102-109,112-117
3ias 9:39-44,85-95,102-109,112-117
2hz6 A:61-65,73-78,99-107,173-183
2vkr G:37-42,72-79,87-94,97-101
2vkr F:37-42,72-79,87-94,97-101
2vkr C:37-42,72-79,87-94,97-101
2vkr D:37-42,72-79,87-94,97-101
3pni B:1-7,32-36,42-56,60-66
3pni A:1-7,31-36,42-56,60-66
3gde A:243-250,331-343,350-363,373-377
3o5h I:85-93,99-107,150-166,178-187
3g3s B:92-102,216-220,224-235,237-248
3g3s A:92-102,216-220,224-235,237-248
3izr F:86-95,100-107,149-165,176-182
2xtg H:82-91,94-100,137-153,160-164
3oh7 H:83-90,94-100,137-153,160-164
3oh7 I:1-7,6-10,22-34,35-39
3oas G:83-90,93-99,136-152,158-164
3rjb A:74-86,90-94,112-129,132-138
3baa A:114-122,222-230,239-251,258-262
3cxc E:79-88,93-99,137-153,164-172
3pip E:82-91,94-100,137-153,161-165
3pip E:82-91,94-100,137-153,158-162
3oat G:81-90,93-99,136-152,157-163
3c9q A:49-56,61-66,107-117,129-134
2xsj A:243-247,294-299,307-314,316-320
2xsj D:243-247,294-299,307-314,316-320
3orb G:81-90,93-99,136-152,157-163
2wrj H:87-91,94-100,137-153,160-164
3r05 B:488-492,496-502,662-671,674-678
3r05 A:488-492,496-502,662-671,674-678
2be1 A:154-160,166-174,194-202,294-306
2be1 B:154-160,166-174,194-202,294-306
2wh4 H:81-91,95-100,137-153,160-164
3i8f P:31-38,103-108,110-126,127-134
3g71 E:79-88,93-99,137-153,164-172
2vug A:89-96,166-178,184-196,201-207
2vug B:89-96,166-178,184-196,201-207
3pyt H:1-7,6-10,22-34,35-39
3pyt G:82-91,94-100,137-153,160-164
2y11 H:85-91,94-100,137-153,160-164
3pyr H:1-7,6-10,22-34,35-39
3pyr G:82-91,94-100,137-153,160-164
3g6e E:79-88,93-99,137-153,164-172
3i55 E:79-88,93-99,137-153,164-172
2hix A:253-260,344-356,364-377,386-392
3ba8 A:114-122,222-233,239-251,258-262
3huz H:82-91,94-100,137-153,160-164
2wdl H:82-91,94-100,137-153,160-164
3pyv H:1-7,6-10,22-34,35-39
3pyv G:82-91,94-100,137-153,160-164
2k46 A:9-16,19-24,54-63,166-175
3c2e A:40-49,49-54,105-134,287-294
3pyo H:1-7,6-10,22-34,35-39
3pyo G:82-91,94-100,137-153,160-164
3j01 G:82-90,94-99,136-152,157-163
3kit H:82-91,94-100,137-153,160-164
3tsz A:516-525,524-530,576-588,632-640
2j58 G:89-98,132-136,140-157,160-170
2j58 F:89-98,132-136,140-157,160-170
2j58 H:89-98,132-136,140-157,160-170
2j58 D:89-98,132-136,140-157,160-170
2j58 A:89-98,132-136,140-157,160-170
2j58 B:89-98,132-136,140-157,160-170
2j58 E:89-98,132-136,140-157,160-170
2j58 C:89-98,132-136,140-157,160-170
3f1h H:82-91,94-100,137-153,160-164
2eb4 A:102-115,114-118,123-131,131-143
2eb4 E:102-115,114-118,123-131,131-143
2eb4 D:102-115,114-118,123-131,131-143
2eb4 B:102-115,114-118,123-131,131-143
3c23 A:36-44,52-56,106-120,120-128
3c23 B:36-44,52-56,106-120,120-128
2y8w A:96-102,179-183,184-195,206-211
3i20 G:81-90,93-99,136-152,157-163
3qt1 A:1114-1119,1138-1142,1312-1319,1326-1330
3oh5 H:83-90,94-100,137-153,160-164
3oh5 I:1-7,6-10,22-34,35-39
2jwp A:10-17,19-24,54-63,166-175
2hiv A:253-260,344-356,364-377,386-392
3bp1 A:74-87,90-94,112-129,132-138
3bp1 D:74-86,90-94,112-129,132-138
3bp1 C:74-86,90-94,112-129,132-138
3bp1 B:74-86,90-94,112-129,132-138
3izs F:85-94,99-105,150-166,177-185
3hux H:82-90,94-100,137-153,160-164
3anw B:7-14,13-17,28-39,40-44
3anw A:135-143,142-147,168-179,180-184
3i1r G:81-90,93-99,136-152,157-163
2c5u A:92-99,172-185,191-199,207-211
2c5u B:92-99,172-185,191-199,207-211
2hvs B:29-35,114-126,134-146,151-157
2hvs A:29-36,114-126,134-146,151-157
3i22 G:83-89,93-99,136-152,158-164
3ofl B:153-161,164-172,233-240,247-259
3ofl O:153-161,164-172,233-240,247-259
3ofl F:153-161,164-172,233-240,247-259
3ofl E:153-161,164-172,233-240,247-259
3ofl K:153-161,164-172,233-240,247-259
3ofl I:153-161,164-172,233-240,247-259
3ofl N:153-161,164-172,233-240,247-259
3ofl L:153-161,164-172,233-240,247-259
3ofl H:153-161,164-172,233-240,247-259
3ofl A:153-161,164-172,233-240,246-259
3ofl G:153-161,164-172,233-240,247-259
3ofl D:153-161,164-172,233-240,247-259
3ofl M:153-161,164-172,233-240,247-259
3ofl J:153-161,164-172,233-240,247-259
3ofl C:153-161,164-172,233-240,246-259
2xux H:82-91,94-100,137-153,160-164
3cme E:79-88,93-99,137-153,164-172
2qex E:79-88,93-99,137-153,164-172
3cpw E:79-88,93-99,137-153,164-172
3ccr E:79-88,93-99,137-153,164-172
3cce E:79-88,93-99,137-153,164-172
3cc2 E:79-88,93-99,137-153,164-172
2gyc E:82-90,95-99,136-153,164-169
3ccl E:79-88,93-99,137-153,164-172
3cd6 E:79-88,93-99,137-153,164-172
2qa4 E:79-88,93-99,137-153,164-172
3ccu E:79-88,93-99,137-153,164-172
3ccm E:79-88,93-99,137-153,164-172
3ccs E:79-88,93-99,137-153,164-172
3cc4 E:79-88,93-99,137-153,164-172
3ccj E:79-88,93-99,137-153,164-172
3ccq E:79-88,93-99,137-153,164-172
3d5b I:1-7,6-10,22-34,35-39
3ccv E:79-88,93-99,137-153,164-172
2gya E:82-90,95-99,136-153,164-169
3d5d I:1-7,6-10,22-34,35-39
3cc7 E:79-88,93-99,137-153,164-172
3cma E:79-88,93-99,137-153,164-172