1. b.6.1 Cupredoxins contains copper-binding site !
Cupredoxin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands
2fqe d2fqea3 A:452-458,463-470,471-476,477-485
2fqf d2fqfa3 A:452-458,463-470,471-476,477-485
2fqg d2fqga3 A:452-458,463-470,471-476,477-485
1kv7 d1kv7a3 A:452-458,463-470,471-476,477-485
1pf3 d1pf3a3 A:452-458,463-470,471-476,477-485
1n68 d1n68a3 A:452-458,463-470,471-476,477-485
2fqd d2fqda3 A:452-458,463-470,471-477,477-485
1jxd d1jxda_ A:40-44,49-58,67-75,76-83
1j5d d1j5da_ A:38-44,49-58,67-75,76-83
1jxf d1jxfa_ A:38-44,49-58,67-74,76-84
2cj3 d2cj3a1 A:40-44,52-60,70-77,83-90
2gim d2gima1 A:40-44,52-60,69-77,83-90
2gim d2gimc1 C:40-44,52-60,69-77,83-89
2. b.113.1 N-terminal domain of MutM-like DNA repair proteins
N-terminal domain of MutM-like DNA repair proteins pseudobarrel; capped on both ends by alpha-helices
2oq4 d2oq4a2 A:23-28,29-40,61-67,88-95
1q3c d1q3ca2 A:23-28,29-40,61-67,88-95
1k3w d1k3wa2 A:21-28,29-40,61-67,88-95
1q39 d1q39a2 A:23-28,29-40,61-67,88-95
1k3x d1k3xa2 A:21-28,29-40,61-67,88-95
1q3b d1q3ba2 A:22-28,29-40,61-67,88-95
2ea0 d2ea0a2 A:21-28,29-40,61-67,88-95
2opf d2opfa2 A:23-28,29-40,61-67,88-95
3. e.27.1 Upper collar protein gp10 (connector protein)
Upper collar protein gp10 (connector protein) 2 domains: (1) alpha-helical bundle; (2) beta-barrel (n=5, S=8)
1fou d1foud_ D:158-165,170-178,183-187,195-201
1fou d1fouj_ J:158-164,170-178,183-187,195-201
1fou d1fouk_ K:158-164,170-178,183-187,195-201
1fou d1foul_ L:158-164,170-178,183-188,195-201
1h5w d1h5wb_ B:158-165,166-178,183-189,195-201
1fou d1fouc_ C:158-164,170-178,183-188,195-201
1fou d1fouh_ H:158-165,170-178,183-188,195-201
1fou d1foub_ B:158-164,170-178,183-187,195-201
1fou d1foug_ G:158-164,170-178,183-188,195-201
1fou d1foua_ A:158-164,170-178,183-188,195-201
1jnb d1jnbg_ G:158-165,170-178,183-188,195-201
1jnb d1jnbb_ B:158-165,170-178,183-188,195-201
1jnb d1jnbe_ E:158-165,170-178,183-188,195-201
1jnb d1jnbd_ D:158-164,170-178,183-188,195-201
1jnb d1jnbl_ L:158-164,170-178,183-188,195-201
1jnb d1jnbk_ K:158-164,170-178,183-188,195-201
1jnb d1jnba_ A:158-164,170-178,183-188,195-201
1jnb d1jnbi_ I:158-164,170-178,183-188,195-201
1jnb d1jnbj_ J:158-164,170-178,183-188,195-201
1fou d1foue_ E:158-165,170-178,183-189,195-201
1h5w d1h5wc_ C:158-164,170-178,183-189,195-201
1ijg d1ijgk_ K:158-165,170-178,183-189,195-201
1ijg d1ijgj_ J:158-165,170-178,183-189,195-201
1ijg d1ijgd_ D:158-165,170-178,183-189,195-201
1fou d1fouf_ F:158-164,170-178,183-189,195-201
1ijg d1ijgl_ L:158-165,170-178,183-189,195-201
1ijg d1ijge_ E:158-165,170-178,183-189,195-201
1ijg d1ijga_ A:158-165,170-178,183-189,195-201
1ijg d1ijgf_ F:158-165,170-178,183-189,195-201
1ijg d1ijgg_ G:158-165,170-178,183-189,195-201
1ijg d1ijgh_ H:158-165,170-178,183-189,195-201
1ijg d1ijgi_ I:158-165,170-178,183-189,195-201
1ijg d1ijgb_ B:158-165,170-178,183-189,195-201
1ijg d1ijgc_ C:158-165,170-178,183-189,195-201
1jnb d1jnbc_ C:158-164,170-178,183-189,195-201
1jnb d1jnbh_ H:158-164,170-178,183-189,195-201
1jnb d1jnbf_ F:158-164,170-178,183-189,195-201
1fou d1foui_ I:158-164,170-178,183-189,195-201
4. b.26.1 SMAD/FHA domain has a few short helices inserted in loops !
SMAD/FHA domain sandwich; 11 strands in 2 sheets; greek-key
1mr1 d1mr1a_ A:405-411,411-419,432-439,499-506
1mr1 d1mr1b_ B:405-411,411-419,433-439,499-506
5. d.162.1 LDH C-terminal domain-like
LDH C-terminal domain-like unusual fold, defines family
1lld d1lldb2 B:144-150,237-254,254-260,260-265
1lld d1llda2 A:144-150,237-254,254-260,260-265
1s6y d1s6ya2 A:167-171,318-333,333-339,339-344
1pzg d1pzgc2 C:159-163,246-264,264-270,270-275
1pzg d1pzga2 A:159-163,246-264,264-270,270-275
1pzf d1pzfc2 C:159-163,246-264,264-270,270-275
1pzf d1pzfa2 A:159-163,246-264,264-270,270-275
1pzh d1pzhc2 C:159-163,246-264,264-270,270-275
1pzg d1pzgd2 D:159-163,246-264,264-270,270-275
1pzf d1pzfd2 D:159-163,246-264,264-270,270-275
1pzh d1pzhd2 D:159-163,246-264,264-270,270-275
1uxi d1uxia2 A:139-143,225-243,243-249,249-254
1xiv d1xiva2 A:159-163,246-264,264-270,270-275
1u5a d1u5aa2 A:159-163,246-264,264-270,270-275
1lth d1ltht2 T:144-148,237-254,254-260,260-265
1t24 d1t24a2 A:159-163,246-264,264-270,270-275
2ldb d2ldbb2 B:157-161,247-265,265-271,271-276
2ldb d2ldba2 A:157-161,247-265,265-271,271-276
2ldb d2ldbc2 C:157-161,247-265,265-271,271-276
2ldb d2ldbd2 D:157-161,247-265,265-271,271-276
6. b.1.1 Immunoglobulin
Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
3d2u d3d2ud1 D:34-40,44-51,58-64,70-80
3d2u d3d2uh1 H:34-40,51-58,58-64,70-80
1ugn d1ugna1 A:34-40,51-58,58-64,70-80
2dyp d2dypd1 D:32-40,44-51,58-64,71-80
1g0x d1g0xa1 A:34-40,51-58,58-64,70-80
1j86 d1j86a2 A:115-123,127-134,135-140,146-156
3d2u d3d2ud1 D:34-40,51-58,58-64,70-80
1ufu d1ufua1 A:34-40,51-58,58-64,70-80
1p7q d1p7qd1 D:35-40,51-58,58-64,70-77
7. b.45.1 FMN-binding split barrel related to the ferredoxin reductase-like FAD-binding domain !
Split barrel-like barrel; n=6, S=10; greek-key
2idb d2idbc1 C:214-222,224-234,263-267,270-278
2idb d2idba1 A:214-222,224-234,263-267,270-278
2idb d2idbb1 B:214-222,224-233,263-267,270-278
1usf d1usfb_ B:68-75,79-90,107-112,114-123
1usc d1uscb_ B:68-75,79-90,107-112,114-123
1usc d1usca_ A:68-75,79-90,107-112,114-123
1usf d1usfa_ A:68-75,79-90,107-112,114-123
1eje d1ejea_ A:77-84,88-97,121-125,128-136
1i0s d1i0sa_ A:60-68,72-83,101-106,108-118
1rz0 d1rz0f_ F:64-71,75-84,99-104,106-115
1rz0 d1rz0a_ A:64-71,75-84,99-104,106-115
1rz0 d1rz0h_ H:64-71,75-84,99-104,106-115
1rz0 d1rz0e_ E:64-71,75-84,99-104,106-115
1rz0 d1rz0g_ G:64-71,75-84,99-104,106-115
1rz0 d1rz0c_ C:64-71,75-84,99-104,106-115
1rz0 d1rz0b_ B:64-71,75-84,99-104,106-115
1rz0 d1rz0d_ D:64-71,75-84,99-104,106-115
1yoa d1yoaa1 A:64-71,75-85,104-110,113-121
1rz1 d1rz1h_ H:64-71,75-84,99-104,106-115
1rz1 d1rz1d_ D:64-71,75-84,99-104,106-115
1rz1 d1rz1f_ F:64-71,75-84,99-104,106-115
1rz1 d1rz1a_ A:64-71,75-84,99-104,106-115
1rz1 d1rz1b_ B:64-71,75-84,99-104,106-115
1rz1 d1rz1e_ E:64-71,75-84,99-104,106-115
1wgb d1wgba_ A:64-71,75-85,104-110,113-121
1rz1 d1rz1c_ C:64-71,75-84,99-104,106-115
1rz1 d1rz1g_ G:64-71,75-84,99-104,106-115
2nr4 d2nr4a1 A:73-80,82-93,108-113,115-125
1i0r d1i0ra_ A:60-68,72-82,101-106,108-118
2ptf d2ptfa1 A:80-87,89-99,111-116,119-127
2ptf d2ptfb1 B:80-87,89-99,111-116,119-127
8. d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) N-terminal residue provides two catalytic groups, nucleophile and proton donor !
Ntn hydrolase-like 4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
3pva d3pvad_ D:75-83,101-113,125-129,141-149
3pva d3pvaa_ A:75-83,101-113,125-129,141-149
3pva d3pvab_ B:75-83,101-113,125-129,141-149
3pva d3pvae_ E:75-83,101-113,125-129,141-149
3pva d3pvag_ G:75-83,101-113,125-129,141-149
3pva d3pvaf_ F:75-83,101-113,125-129,141-149
3pva d3pvah_ H:75-83,101-113,125-129,141-149
3pva d3pvac_ C:75-83,101-113,125-129,141-149
2pva d2pvaa_ A:75-83,101-113,125-129,141-149
2pva d2pvad_ D:75-83,101-113,125-130,141-149
2pva d2pvac_ C:75-83,101-113,125-130,141-149
2pva d2pvab_ B:75-83,101-113,126-130,141-149
9. d.154.1 DmpA/ArgJ-like convergent similarity to the Ntn amidohydrolases !
DmpA/ArgJ-like duplication of beta(3)-alpha-beta-alpha motif; 4 layers: alpha/beta/beta/alpha
1vz7 d1vz7b_ B:38-45,51-64,105-112,221-230
1vz6 d1vz6a_ A:38-45,51-64,105-112,221-230
1vz6 d1vz6b_ B:38-45,51-64,105-112,221-230
1vz7 d1vz7d_ D:38-45,51-64,105-112,221-230
1vz7 d1vz7c_ C:38-45,51-64,67-74,221-230
1vz8 d1vz8d_ D:38-45,51-64,105-114,221-230
1vz7 d1vz7c_ C:38-45,51-64,105-114,221-230
1vz7 d1vz7a_ A:38-45,51-64,67-74,221-230
1vz7 d1vz7b_ B:38-45,51-64,67-74,221-230
1vz8 d1vz8b_ B:38-45,51-64,105-114,221-230
1vz8 d1vz8a_ A:38-45,51-64,67-74,221-230
1vz8 d1vz8a_ A:38-45,51-64,105-114,221-230
1vz8 d1vz8c_ C:38-45,51-64,67-74,221-230
1vz6 d1vz6a_ A:38-45,51-64,67-74,221-230
1vz8 d1vz8c_ C:38-45,51-64,105-114,221-230
1vz7 d1vz7a_ A:38-45,51-64,105-114,221-230
1vz8 d1vz8b_ B:38-45,51-64,67-74,221-230
1vz6 d1vz6b_ B:38-45,51-64,67-74,221-230
1vz8 d1vz8d_ D:38-45,51-64,67-74,221-230
1vz7 d1vz7d_ D:38-45,51-64,67-74,221-230
10. b.85.4 dUTPase-like forms tight trimer through an additional beta-sheet in each subunit ! subunit beta-sheets are orthogonally packed around the three-fold axis !
beta-clip double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
1seh d1seha_ A:5-10,11-19,30-37,54-59
1syl d1syla_ A:5-10,11-19,30-37,54-59
1rnj d1rnja_ A:5-10,11-19,30-37,54-59
1eu5 d1eu5a_ A:5-10,11-19,30-37,54-59
2hrm d2hrma1 A:5-10,11-19,30-37,54-59
1dud d1duda_ A:5-10,11-19,30-37,54-59
1euw d1euwa_ A:5-10,11-19,30-37,54-59
1dup d1dupa_ A:5-10,11-19,30-37,54-59
1rn8 d1rn8a_ A:5-10,11-19,30-35,54-59
2hr6 d2hr6a1 A:5-10,11-19,30-35,54-59
11. b.18.1 Galactose-binding domain-like
Galactose-binding domain-like sandwich; 9 strands in 2 sheets; jelly-roll
1gog d1goga2 A:13-19,26-33,38-42,51-60
2eib d2eiba2 A:13-19,26-33,38-42,51-60
1gof d1gofa2 A:13-19,26-33,38-42,51-60
1goh d1goha2 A:13-19,26-33,38-42,51-60
1euu d1euua2 A:508-515,525-532,537-541,550-559
2ber d2bera2 A:508-515,525-532,537-541,550-559
1wcq d1wcqa2 A:508-515,525-532,537-541,550-559
2eic d2eica2 A:13-19,26-33,38-42,51-60
2vz3 d2vz3a2 A:14-19,26-33,38-42,51-59
2jkx d2jkxa2 A:14-19,26-33,38-42,51-59
2eie d2eiea2 A:14-19,26-33,38-42,51-59
1k3i d1k3ia2 A:14-19,26-33,38-42,51-59
2vz1 d2vz1a2 A:14-19,26-33,38-42,51-59
1t2x d1t2xa2 A:14-19,26-33,38-42,51-59
2eid d2eida2 A:14-19,26-33,38-42,51-59
1jhj d1jhja_ A:29-34,40-48,53-57,61-68
1gqp d1gqpa_ A:121-126,133-140,145-149,153-160
1gqp d1gqpb_ B:121-126,133-140,145-149,153-160
1j83 d1j83b_ B:2108-2117,2168-2177,2184-2193,2195-2206
1xnt d1xnta_ A:56-64,117-124,126-138,142-151
1xna d1xnaa_ A:56-64,117-124,126-138,142-151
1j84 d1j84a_ A:108-117,168-178,184-193,195-205
1j83 d1j83a_ A:1108-1117,1168-1178,1184-1193,1195-1206
12. d.58.3 Protease propeptides/inhibitors
Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
1t1e d1t1ea2 A:39-47,84-99,146-150,155-161
13. c.68.1 Nucleotide-diphospho-sugar transferases
Nucleotide-diphospho-sugar transferases 3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
1h3m d1h3mb_ B:101-106,113-127,130-137,165-170
1inj d1inja_ A:101-106,113-127,130-137,165-170
1vgu d1vgua_ A:101-106,113-127,130-137,165-170
1vgt d1vgta_ A:101-106,113-127,130-137,165-170
1vgt d1vgtb_ B:101-106,113-127,130-137,165-170
1h3m d1h3ma_ A:101-106,113-128,130-137,165-170
1mc3 d1mc3a_ A:108-113,115-127,129-137,219-224
1mc3 d1mc3b_ B:108-113,115-127,129-137,219-224
2cu2 d2cu2a2 A:110-114,114-130,133-140,251-255
1g0r d1g0ra_ A:110-115,117-129,211-217,221-226
1g0r d1g0rg_ G:110-115,117-129,211-217,221-226
1fxo d1fxoc_ C:110-115,117-129,211-217,221-226
1g0r d1g0rf_ F:110-115,117-129,211-217,221-226
1g2v d1g2vh_ H:110-115,117-129,211-217,221-226
1mp5 d1mp5a_ A:112-116,116-129,212-218,222-226
1g1l d1g1lc_ C:110-115,117-129,211-217,221-226
1g3l d1g3lc_ C:110-115,117-129,211-217,221-226
1g3l d1g3la_ A:110-115,117-129,211-217,221-226
1g1l d1g1ld_ D:110-115,117-129,211-217,221-226
2cu2 d2cu2a2 A:110-114,114-130,243-249,251-255
1mp5 d1mp5b_ B:112-116,116-129,212-218,222-226
1mc3 d1mc3b_ B:108-113,115-127,209-215,219-224
14. d.5.1 RNase A-like can be classified as disulfide-rich !
RNase A-like contains long curved beta-sheet and 3 helices
1y92 d1y92b_ B:42-49,50-62,71-76,76-87
1rra d1rraa_ A:42-49,50-60,71-76,76-87
1agi d1agia_ A:42-49,50-60,69-74,75-85
15. d.181.1 Insert subdomain of RNA polymerase alpha subunit
Insert subdomain of RNA polymerase alpha subunit unusual fold; contains a left-handed beta-alpha-beta unit
1bdf d1bdfa2 A:52-62,77-88,128-134,138-148
1i6v d1i6vb2 B:49-59,74-85,127-133,135-148
1bdf d1bdfc2 C:52-62,77-88,128-134,138-148
2e2h d2e2hc2 C:42-55,59-70,144-148,149-163
1ynj d1ynja2 A:49-59,74-86,127-133,136-146
2gho d2ghob2 B:48-59,74-86,129-133,136-149
2nvq d2nvqc2 C:42-55,59-70,144-148,149-163
1zyr d1zyrb2 B:52-59,74-85,127-134,137-146
2nvy d2nvyc2 C:42-52,59-71,144-148,149-163
1i50 d1i50c2 C:42-52,59-71,144-148,149-163
1ynn d1ynna2 A:49-59,74-85,127-134,134-146
2nvx d2nvxc2 C:42-55,59-71,144-148,149-163
1k83 d1k83c2 C:42-55,59-71,144-148,149-163
1twf d1twfc2 C:42-52,59-71,144-148,149-163
2yu9 d2yu9c2 C:42-55,59-71,144-148,149-163
1i6h d1i6hc2 C:52-56,59-71,140-148,150-163
2nvy d2nvyc2 C:52-56,59-71,144-148,149-163
1i50 d1i50c2 C:52-56,59-71,144-148,149-163
1ynn d1ynnb2 B:49-59,74-86,127-134,134-146
1twf d1twfc2 C:52-56,59-71,144-148,149-163
2cw0 d2cw0b2 B:46-59,74-85,127-134,137-146
16. d.15.4 2Fe-2S ferredoxin-like
beta-Grasp (ubiquitin-like) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
1doi d1doia_ A:78-83,89-97,97-101,103-108
17. d.137.1 Monooxygenase (hydroxylase) regulatory protein duplication: consists of two beta-alpha-(beta)-beta(2) motifs; some topological similarity to the ferredoxin-like fold !
Monooxygenase (hydroxylase) regulatory protein corner-like structure formed by two sheets and filled in with 2-3 helices
2bf5 d2bf5b1 B:12-19,20-35,54-59,81-85
18. i.7.1 Reovirus components
Reovirus components
1ej6 d1ej6b_ B:1040-1049,1158-1170,1177-1184,1198-1203
19. d.126.1 Pentein
Pentein, beta/alpha-propeller duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis
2dey d2deyx3 X:304-311,316-331,594-600,647-652
2dew d2dewx3 X:304-311,316-331,594-600,647-652
1wda d1wdaa3 A:304-311,316-331,594-600,647-652
20. d.131.1 DNA clamp
DNA clamp contains two helices and two beta sheets ! duplication: fold has internal pseudo two-fold symmetry
1vyj d1vyja2 A:134-140,140-156,175-184,195-200
1iz5 d1iz5b2 B:131-137,137-152,172-181,186-192
1plr d1plra2 A:134-140,140-156,175-184,195-200
1plr d1plra1 A:1-8,8-20,45-54,57-63
2od8 d2od8a1 A:1-8,8-24,45-54,57-63
1rxm d1rxma1 A:1-7,7-22,44-53,56-62
1u7b d1u7ba1 A:1-9,8-24,45-54,57-63
1w60 d1w60b1 B:1-9,8-24,45-54,57-63
1w60 d1w60a1 A:1-9,8-24,45-54,57-63
1vyj d1vyjc1 C:1-9,8-24,45-54,57-63
1ul1 d1ul1b1 B:1-7,8-24,45-54,57-63
1axc d1axce1 E:1-9,8-24,45-54,57-63
1vyj d1vyji1 I:1-7,8-24,45-54,57-63
1axc d1axca1 A:1-7,8-24,45-54,57-63
1sxj d1sxjf1 F:1-7,8-20,45-54,57-63
1vyj d1vyjg1 G:1-9,8-24,45-54,57-63
1ul1 d1ul1a1 A:1-7,8-24,45-54,58-63
1vyj d1vyjk1 K:1-9,8-24,45-54,58-63
1ul1 d1ul1c1 C:1-9,8-24,45-54,58-63
1vyj d1vyje1 E:1-9,8-24,45-54,58-63
1vyj d1vyja1 A:1-8,8-24,45-54,58-63
1sxj d1sxjh1 H:0-7,8-20,45-54,56-63
21. b.50.1 Acid proteases
Acid proteases barrel, closed; n=6, S=10, complex topology
1t6e d1t6ex_ X:240-244,245-262,299-305,345-349
2fdp d2fdpa1 A:232-237,237-253,281-289,329-335
2zhu d2zhua1 A:232-237,237-253,281-289,330-335
2ohr d2ohra1 A:232-237,237-253,281-289,330-335
2zhs d2zhsa1 A:233-237,237-253,281-289,330-335
2zht d2zhta1 A:233-237,237-253,281-289,330-335
2zhv d2zhva1 A:232-237,237-253,282-289,330-335
2ohm d2ohma1 A:232-237,237-253,282-289,330-335
2ohu d2ohua1 A:232-237,237-253,282-289,330-335
2ohq d2ohqa1 A:232-237,237-253,282-289,330-335
1w51 d1w51a_ A:232-237,237-253,282-289,330-335
2p4j d2p4jb1 B:233-237,237-253,282-289,330-335
2ohn d2ohna1 A:232-237,237-253,282-289,330-335
2oht d2ohta1 A:232-237,237-253,282-289,330-335
22. i.8.1 RNA polymerase
RNA polymerase
1r9t d1r9tc_ C:42-55,59-70,144-148,149-163
1sfo d1sfoc_ C:42-55,59-70,144-148,149-163
1nik d1nikc_ C:52-56,59-71,140-148,150-163
1pqv d1pqvc_ C:52-56,59-71,140-148,150-163
1r5u d1r5uc_ C:52-56,59-71,140-148,150-163
1r9s d1r9sc_ C:52-56,59-71,140-148,150-163
1nt9 d1nt9c_ C:52-56,59-71,140-148,150-163
23. c.1.8 (Trans)glycosidases
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1clv d1clva2 A:46-50,55-62,98-102,103-108
1tmq d1tmqa2 A:46-50,55-62,98-102,103-108
1jae d1jaea2 A:46-50,55-62,98-102,103-108
1aqh d1aqha2 A:38-42,45-52,88-92,93-98
1g9h d1g9ha2 A:38-42,45-52,88-92,93-98
1g94 d1g94a2 A:38-42,45-52,88-92,93-98
1l0p d1l0pa2 A:38-42,45-52,88-92,93-98
1aqm d1aqma2 A:38-42,45-52,88-92,93-98
1b0i d1b0ia2 A:38-42,45-52,88-92,93-98
1viw d1viwa2 A:46-50,55-62,98-102,104-108
24. i.6.1 Viruses and virus-receptor complexes
Viruses and virus-receptor complexes
1w8x d1w8xd_ D:285-294,320-333,357-365,370-382
1w8x d1w8xb_ B:285-294,320-333,357-365,370-382
1w8x d1w8xi_ I:285-294,320-333,357-365,370-382
1hb7 d1hb7g_ G:285-294,320-333,357-365,370-382
1gw7 d1gw7d_ D:1285-1294,1320-1333,1357-1365,1370-1382
1gw7 d1gw7j_ J:1285-1294,1320-1333,1357-1365,1370-1382
1hb7 d1hb7j_ J:285-294,320-333,357-365,370-382
1hb7 d1hb7d_ D:285-294,320-333,357-365,370-382
1gw7 d1gw7a_ A:1285-1294,1320-1333,1357-1365,1370-1382
1hb7 d1hb7a_ A:285-294,320-333,357-365,370-382
1gw8 d1gw8g_ G:1285-1294,1320-1333,1357-1365,1370-1382
1gw8 d1gw8d_ D:1285-1294,1320-1333,1357-1365,1370-1382
1gw8 d1gw8j_ J:1285-1294,1320-1333,1357-1365,1370-1382
1gw7 d1gw7g_ G:1285-1294,1320-1333,1357-1365,1370-1382
1gw8 d1gw8a_ A:1285-1294,1320-1333,1357-1365,1370-1382
1w8x d1w8xa_ A:282-294,320-333,357-365,370-382
1hb5 d1hb5h_ H:282-294,320-333,357-365,370-382
1hb9 d1hb9e_ E:282-294,320-333,357-365,370-382
1hb9 d1hb9k_ K:282-294,320-333,357-365,370-382
1hb5 d1hb5b_ B:282-294,320-333,357-365,370-382
1hb5 d1hb5e_ E:282-294,320-333,357-365,370-382
1hb9 d1hb9h_ H:282-294,320-333,357-365,370-382
1hb9 d1hb9b_ B:282-294,320-333,357-365,370-382
1gw8 d1gw8k_ K:2282-2294,2320-2333,2357-2365,2370-2382
1hb7 d1hb7h_ H:282-294,320-333,357-365,370-382
1gw7 d1gw7h_ H:2282-2294,2320-2333,2357-2365,2370-2382
1gw8 d1gw8h_ H:2282-2294,2320-2333,2357-2365,2370-2382
1hb7 d1hb7b_ B:282-294,320-333,357-365,370-382
1gw7 d1gw7k_ K:2282-2294,2320-2333,2357-2365,2370-2382
1gw8 d1gw8e_ E:2282-2294,2320-2333,2357-2365,2370-2382
1gw8 d1gw8b_ B:2282-2294,2320-2333,2357-2365,2370-2382
1hb7 d1hb7k_ K:282-294,320-333,357-365,370-382
1gw7 d1gw7b_ B:2282-2294,2320-2333,2357-2365,2370-2382
1gw7 d1gw7e_ E:2282-2294,2320-2333,2357-2365,2370-2382
1hb7 d1hb7e_ E:282-294,320-333,357-365,370-382
1w8x d1w8xg_ G:282-294,320-333,357-365,370-382
1w8x d1w8xh_ H:282-294,320-333,357-365,370-382
1hb9 d1hb9g_ G:282-294,320-333,357-365,370-382
1hb5 d1hb5d_ D:282-294,320-333,357-365,370-382
1hb9 d1hb9a_ A:282-294,320-333,357-365,370-382
1hb5 d1hb5g_ G:282-294,320-333,357-365,370-382
1hb9 d1hb9d_ D:282-294,320-333,357-365,370-382
1hb5 d1hb5a_ A:282-294,320-333,357-365,370-382
1hb9 d1hb9j_ J:282-294,320-333,357-365,370-382
1w8x d1w8xj_ J:282-294,320-333,357-365,370-382
25. b.121.2 Group II dsDNA viruses VP duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits ! trimeric; in the trimers, the domains are arranged around pseudo six-fold axis !
Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
1hx6 d1hx6b2 B:282-294,320-333,357-365,370-382
1hx6 d1hx6a2 A:282-294,320-333,357-365,370-382
1hqn d1hqnb2 B:282-294,320-333,357-365,370-382
1cjd d1cjda2 A:282-294,320-333,357-366,370-382
1hqn d1hqna2 A:282-294,320-333,357-366,370-382
1j5q d1j5qa1 A:65-80,87-94,172-181,200-212
1j5q d1j5qb2 B:257-268,330-344,376-385,412-428
26. b.34.1 C-terminal domain of transcriptional repressors the N-terminal domains of these repressors bind DNA !
SH3-like barrel barrel, partly opened; n*=4, S*=8; meander ! the last strand is interrupted by a turn of 3-10 helix
2dtr d2dtra3 A:164-168,175-186,191-198,221-225
27. d.3.1 Cysteine proteinases the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet !
Cysteine proteinases consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
2q3z d2q3za4 A:294-305,310-318,399-405,419-423
28. b.82.3 cAMP-binding domain-like
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1cx4 d1cx4a2 A:310-316,348-356,361-367,366-375
29. c.14.1 ClpP/crotonase
ClpP/crotonase core: 4 turns of (beta-beta-alpha)n superhelix
1fc7 d1fc7a4 A:334-341,371-385,392-397,409-422
1fc9 d1fc9a4 A:334-341,371-385,392-397,409-422
1fc6 d1fc6a4 A:334-341,371-385,391-397,409-422
30. c.94.1 Periplasmic binding protein-like II Similar in architecture to the superfamily I but partly differs in topology !
Periplasmic binding protein-like II consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication ! mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
2v3q d2v3qa1 A:81-93,248-259,275-279,295-306
2v3q d2v3qa1 A:81-93,248-259,284-288,295-306
31. d.32.1 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase beta-alpha-beta(3); 2 layers: alpha/beta
1zsw d1zswa1 A:6-15,16-29,113-122,217-228
32. d.225.1 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains duplication: the N- and C-terminal halves of the whole proteins are structurally similar !
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Intertwined pseudo hexamer of an alpha+beta motif
1iwg d1iwga5 A:180-189,199-212,249-255,265-270
33. b.112.1 C-terminal domain of mollusc hemocyanin analogous to the Ig-like domain of arthropod hemocyanin; similar sequential but different spatial position relative the shared domain !
C-terminal domain of mollusc hemocyanin six-stranded beta-sandwich, jelly-roll/greek-key topology
1js8 d1js8b2 B:2792-2800,2848-2856,2862-2872,2885-2892
1js8 d1js8a2 A:2792-2800,2848-2856,2862-2872,2885-2892
1lnl d1lnlb2 B:305-313,361-369,375-385,398-405
1lnl d1lnla2 A:305-313,361-369,375-385,398-405
1lnl d1lnlc2 C:305-313,361-369,375-385,398-405
34. b.29.1 Concanavalin A-like lectins/glucanases
Concanavalin A-like lectins/glucanases sandwich; 12-14 strands in 2 sheets; complex topology
1oa4 d1oa4a_ A:83-93,175-187,193-206,210-222
2bw8 d2bw8b1 B:83-95,179-191,197-210,213-227
1h0b d1h0bb_ B:83-95,179-191,197-210,213-227
2bwc d2bwcb1 B:84-95,179-191,197-210,213-226
2bwa d2bwab1 B:83-96,179-191,197-210,213-227
2bw8 d2bw8a1 A:83-95,179-191,197-210,213-227
1h0b d1h0ba_ A:83-95,179-191,197-210,213-227
2bwa d2bwaa1 A:84-95,179-191,197-210,213-226
2nlr d2nlra_ A:83-93,175-187,193-206,209-222
2bwc d2bwca1 A:84-96,179-191,197-210,213-226
1nlr d1nlra_ A:83-94,175-187,193-206,209-222
1oa2 d1oa2c_ C:78-91,171-184,190-202,206-218
1h8v d1h8ve_ E:78-91,171-184,190-202,206-218
1oa2 d1oa2e_ E:78-91,171-184,190-202,206-218
1oa2 d1oa2a_ A:78-91,171-184,190-202,206-218
1oa3 d1oa3d_ D:78-91,171-184,190-202,206-218
1h8v d1h8va_ A:78-91,171-184,190-202,206-218
1oa2 d1oa2d_ D:78-91,171-184,190-202,206-218
1oa3 d1oa3c_ C:78-91,171-184,190-202,206-218
1h8v d1h8vc_ C:78-91,171-184,190-202,206-218
1oa3 d1oa3b_ B:78-91,171-184,190-202,206-218
1oa3 d1oa3a_ A:78-91,171-184,190-202,206-218
1h8v d1h8vf_ F:78-91,171-184,190-202,206-218
1oa2 d1oa2b_ B:78-91,171-184,190-202,206-218
1oa2 d1oa2f_ F:78-91,171-184,190-202,206-218
1olq d1olqa_ A:78-91,171-184,190-202,203-218
1olq d1olqb_ B:78-91,171-184,190-202,203-218
1ks4 d1ks4a_ A:78-89,176-188,194-207,211-223
1ks5 d1ks5a_ A:78-89,176-188,194-207,211-223
1h8v d1h8vd_ D:78-91,171-184,190-202,203-218
1olr d1olra_ A:82-92,176-189,195-208,212-224
1w2u d1w2ua_ A:82-92,176-189,195-208,212-224
1h8v d1h8vb_ B:78-91,171-184,190-203,203-218
35. e.76.1 Viral glycoprotein ectodomain-like
Viral glycoprotein ectodomain-like complex fold; contains three rigid, mostly-beta domains and an alpha-helical region, acting as a conformatiomal switch ("fusion stalk")
2gum d2gumc1 C:156-177,193-205,205-209,262-281
2gum d2guma1 A:156-177,193-205,205-209,262-281
2gum d2gumb1 B:156-177,193-205,205-209,262-281
36. b.12.1 Lipase/lipooxygenase domain (PLAT/LH2 domain)
Lipase/lipooxygenase domain (PLAT/LH2 domain) sandwich; 8 strands in 2 sheets; complex topology ! duplication: has weak internal pseudo twofold symmetry
1no3 d1no3a2 A:9-21,48-56,113-120,124-134
1rrh d1rrha2 A:9-21,48-57,113-120,124-134
37. e.28.1 Reovirus inner layer core protein p3
Reovirus inner layer core protein p3 large protein without apparent domain division; has a number of all-alpha regions and one all beta domain near the C-end
2btv d2btva_ A:200-208,210-230,262-268,871-878
38. f.9.1 Perfringolysin
Perfringolysin 2 domains: (1) alpha+beta; (2) all-beta, similar to the CalB domain fold but the two last strands are transposed
1m3j d1m3jb_ B:73-90,210-217,219-236,374-391
1m3j d1m3ja_ A:73-90,210-217,219-236,374-391
1m3i d1m3ib_ B:73-90,210-217,219-236,374-391
1pfo d1pfoa_ A:73-90,210-217,219-236,374-391
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 130 (enumeration index: query132) of S4
3n4l A:239-243,243-259,288-295,335-341
3noi A:50-58,81-89,89-97,103-113
3noi B:50-58,81-89,89-97,103-113
2gji A:8-14,17-28,52-58,71-76
2d37 A:63-70,72-82,99-104,107-115
3liu B:101-110,112-122,131-135,145-156
3liu A:101-110,112-122,131-135,145-156
2rg2 A:75-83,104-113,125-130,141-149
3iyo D:188-197,247-256,272-287,297-310
3iyo B:188-197,247-256,272-287,297-310
3iyo A:188-197,247-256,272-287,297-310
2rf8 A:75-83,104-113,125-130,141-149
2rf8 B:75-83,104-113,125-130,141-149
3dor B:396-402,498-512,518-524,538-552
3dor A:396-402,498-512,518-524,538-552
3k7a C:52-56,59-71,140-148,151-163
2bzd C:508-515,525-532,537-541,550-559
2zid A:505-510,515-523,523-527,528-536
2pa8 D:37-50,54-66,128-135,134-149
2j1r A:22-27,34-41,52-57,59-67
2j1r B:22-27,34-41,52-58,61-67
3fo8 D:96-109,146-158,166-172,178-189
2y38 A:61-66,121-128,132-138,145-153
3aq3 B:62-68,68-79,79-83,88-94
3aq3 C:62-68,68-79,79-83,88-94
3aq3 A:62-68,68-79,79-83,88-94
3nsd A:452-458,463-470,471-476,477-485
3n2w A:65-76,80-89,130-135,288-297
3n2w D:65-76,80-89,94-100,288-297
3n2w B:65-76,80-89,130-135,288-297
3n2w C:65-76,80-89,130-135,288-297
3n2w A:65-76,80-89,94-100,288-297
3n2w D:65-76,80-89,130-135,288-297
3n2w B:65-76,80-89,94-100,288-297
3n2w C:65-76,80-89,94-100,288-297
3nfw A:69-76,80-90,106-111,113-122
3nfw C:69-76,80-90,106-111,113-122
3nfw B:69-76,80-90,106-111,113-122
3nfw D:69-76,77-90,106-111,113-122
2icc A:29-41,60-67,75-83,89-101
3k4x A:401-407,407-423,442-451,462-467
2rlc A:75-83,104-113,125-130,141-149
3nng B:198-204,215-222,227-233,239-246
2jen A:117-129,214-227,233-246,246-261
2zvv A:1-9,8-24,45-54,57-63
2zvv B:1-9,8-24,45-54,57-63
2ztn A:183-197,247-256,272-287,296-310
2zjl A:232-237,237-253,281-289,330-335
2okx B:206-216,413-421,426-430,435-443
2zx4 A:119-131,151-163,166-173,186-195
2zx4 B:119-131,151-163,166-173,186-195
2zx4 A:18-28,51-63,66-72,86-96
2zx4 B:18-31,53-63,66-72,86-97
3h3f D:156-160,247-265,265-271,271-276
2inn L:4-11,12-27,44-49,69-75
2vsc A:35-43,69-76,76-83,92-114
2vsc B:35-43,69-76,76-83,92-114
2vsc D:35-43,69-76,76-83,92-114
3k1q B:981-990,1095-1107,1114-1121,1130-1140
3k1q C:977-986,1095-1107,1114-1121,1130-1140
2hrt C:180-189,199-212,249-255,265-270
2hrt F:180-189,199-212,249-255,265-270
3qi0 C:43-49,59-66,66-73,304-310
3qi0 D:43-49,59-66,66-73,304-310
3qi0 F:44-49,59-66,66-73,304-309
3qi0 B:43-49,59-66,66-73,304-310
3qi0 E:43-49,59-66,66-73,304-310
3qi0 A:43-49,59-66,66-73,304-310
3fds D:1-6,8-24,45-54,57-63
3fds C:1-8,8-24,45-54,57-63
3dpm B:396-402,498-512,518-524,538-552
3dpm A:396-402,498-512,518-524,538-552
3pau A:452-458,463-470,471-476,477-485
3izx C:1072-1081,1189-1196,1201-1209,1226-1233
3izx B:1073-1077,1189-1196,1201-1209,1229-1233
2zx2 A:119-131,151-163,166-173,186-195
2zx2 A:18-28,51-63,66-72,86-96
2zx2 B:119-128,151-163,166-173,186-195
2zx2 B:18-28,53-63,66-72,86-96
2qzl A:232-237,237-253,282-289,330-335
2q15 A:232-237,237-253,282-289,330-335
3gpm A:1-8,8-23,45-54,58-63
3lje A:46-53,54-66,71-76,78-88
2ewy B:246-250,250-266,295-302,341-347
2ewy D:246-250,250-266,295-302,341-347
2ewy C:246-250,250-266,295-302,341-347
2ewy A:246-250,250-266,295-302,341-347
2zic A:505-513,515-523,523-527,528-536
3aq2 B:62-68,68-79,79-83,88-94
3aq2 A:62-68,68-79,79-83,88-94
3hbc A:98-106,122-134,149-153,164-172
3k77 E:5-14,20-27,32-39,41-50
3k77 B:5-14,20-27,32-36,41-50
3k77 F:5-14,20-27,32-36,41-50
3k77 A:5-14,20-27,32-36,41-50
3k77 H:5-14,20-27,32-36,41-50
3k77 G:5-14,20-27,32-36,41-50
3k77 C:5-14,20-27,32-36,41-50
3ge8 E:14-20,21-36,55-60,80-85
3nwd D:156-177,193-205,205-209,265-281
3nwd B:156-177,193-205,205-209,265-281
1vdg B:34-40,44-51,58-64,71-80
1vdg A:34-40,51-58,58-64,70-78
1vdg B:34-40,51-58,58-64,71-80
3a1j C:15-23,23-35,58-67,71-76
3a1j A:142-148,148-160,193-201,204-209
2bzc A:38-42,48-60,71-76,80-88
2xqx A:808-815,824-831,839-843,846-854
2xqx B:808-815,824-831,839-843,846-854
2jxa A:54-67,85-97,100-107,120-130
2j1t A:22-27,34-41,52-57,61-67
2j1t B:22-27,34-41,52-58,61-67
3nt0 A:452-458,463-470,471-476,477-485
3om9 D:159-163,246-264,264-270,270-275
3om9 C:159-163,246-264,264-270,270-275
2zzq A:188-197,247-256,272-288,296-310
3l10 A:1-8,8-23,45-54,57-63
3ixk A:281-285,285-301,329-337,378-383
3ixk B:280-285,285-301,330-337,378-383
2jes O:284-290,295-307,307-312,315-321
2jes E:284-290,295-307,307-312,315-321
2jes A:284-290,295-307,307-312,315-321
2jes C:284-290,295-307,307-312,315-321
2jes W:284-290,295-307,307-312,315-321
2jes S:284-290,295-307,307-312,315-321
2jes Q:284-290,295-307,307-312,315-321
2jes Y:284-290,295-307,307-312,315-321
2jes G:284-290,295-307,307-312,315-321
2jes K:284-290,295-307,307-312,315-321
2jes I:284-290,295-307,307-312,315-321
2jes U:284-290,295-307,307-312,315-321
2jes M:284-290,295-307,307-312,315-321
3aod C:180-189,199-212,249-254,265-270
2bjg B:75-82,104-113,125-130,142-149
2ggq A:99-103,104-115,197-202,205-209
3ndv B:63-76,80-89,130-135,288-297
3ndv A:65-76,80-89,94-100,288-297
3ndv C:63-76,80-89,130-135,288-297
3ndv D:65-76,80-89,130-135,288-297
3ndv C:63-76,80-89,94-100,288-297
3ndv A:65-76,80-89,130-135,288-297
3ndv B:63-76,80-89,94-100,288-297
3ndv D:65-76,80-89,94-100,288-297
2iuk B:1009-1019,1056-1064,1118-1128,1132-1142
3gfz A:150-155,363-374,377-381,394-399
3aoi A:49-59,74-86,127-134,134-148
3aoi F:49-59,74-86,127-134,134-148
3aoi B:49-59,74-86,127-134,134-148
3aoi G:49-59,74-86,127-134,134-148
3rsx A:232-237,237-253,282-289,330-335
3fm3 B:137-147,149-171,190-195,333-346
3i5d A:63-73,88-95,100-106,188-200
3i5d C:63-73,88-95,100-106,188-200
3i5d B:63-73,88-95,100-106,188-200
3q2c A:34-40,51-58,58-64,70-80
3ixj B:280-285,285-301,329-337,378-383
3ixj A:281-285,285-301,330-337,378-383
3p83 C:1-7,7-22,44-53,56-62
3s1q C:42-55,59-71,144-148,149-163
2quy E:75-83,101-113,125-129,141-149
2quy F:75-83,101-113,125-130,141-149
2quy D:75-83,101-113,125-130,141-149
2quy H:75-83,101-113,125-129,141-149
2quy C:75-83,101-113,125-129,141-149
2quy A:75-83,101-113,126-130,141-149
2io4 C:1-8,8-24,45-54,57-63
2io4 D:1-6,8-24,45-54,57-63
2io4 A:1-7,8-24,45-54,57-63
2io4 B:1-7,8-24,45-54,57-63
2jjs D:35-43,69-76,76-83,92-101
2jjs C:35-43,69-76,76-83,92-101
3rtm A:233-237,237-253,282-289,330-335
3l81 A:251-257,261-268,268-273,276-287
2jem B:117-129,214-227,233-246,246-261
2jem A:117-129,214-227,233-246,246-261
2j1u A:22-27,34-41,52-57,59-67
2j1u B:22-27,34-41,52-57,61-67
3po3 C:52-56,59-70,140-148,151-163
3aoh A:49-59,74-86,127-134,134-148
3aoh K:49-59,74-86,127-134,134-148
3aoh L:49-59,74-86,127-134,134-148
3aoh G:49-59,74-86,127-134,134-148
3aoh F:49-59,74-86,127-134,134-148
3aoh B:49-59,74-86,127-134,134-148
3od3 A:452-458,463-470,471-476,477-485
3aob C:180-189,199-212,249-254,265-270
2vnn A:294-298,298-314,343-350,391-395
3gtl C:42-55,59-70,144-148,149-163
3rh7 B:70-77,81-91,107-112,114-123
3rh7 A:70-77,81-91,107-112,114-123
3rh7 E:70-77,81-91,107-112,114-123
3rh7 F:70-77,81-91,107-112,114-123
3rh7 D:70-77,81-91,107-112,114-123
3rh7 C:70-77,81-91,107-112,114-123
3ind A:295-299,299-315,344-351,392-396
3duz A:60-79,98-109,110-114,154-180
3pv6 B:50-58,81-89,89-97,103-113
3h2t A:414-426,432-454,456-460,474-490
3p87 E:1-9,8-24,45-54,57-63
3p87 A:1-9,8-24,45-54,57-63
3p87 F:1-9,8-24,45-54,57-63
3p87 D:1-9,8-24,45-54,57-63
3p87 B:1-9,8-24,45-54,57-63
3p87 C:1-9,8-24,45-54,57-63
1z9v A:21-27,26-37,37-43,44-49
3qhy B:42-49,59-66,66-73,304-311
3sr3 B:128-132,145-159,163-167,309-313
2zji A:232-237,237-253,282-289,330-335
3gfx A:150-154,363-374,377-381,395-399
2v36 B:475-485,485-504,514-519,553-563
3pet A:65-72,72-80,86-92,104-111
3pet B:65-72,72-80,86-92,104-111
3iyd A:58-62,77-89,128-134,136-148
3iyd B:57-62,77-88,128-134,138-148
3kyr A:233-237,237-253,281-289,330-334
3kyr B:233-237,237-253,281-289,330-334
3kyr C:233-237,237-251,282-289,330-334
3cqo B:10-15,24-31,42-47,49-57
3cqo C:10-15,24-31,42-47,49-57
3cqo C:158-163,170-177,188-193,196-203
3cqo A:10-15,24-31,42-47,49-57
3cqo B:158-163,170-177,188-193,196-203
3cqo A:158-163,170-177,188-193,196-203
3lu0 A:52-62,77-88,128-134,138-150
3lu0 B:52-62,77-89,128-134,138-149
3s1r C:52-56,59-71,140-148,151-163
3lx1 A:2-9,9-25,46-55,58-64
3n33 C:65-76,80-89,130-135,288-297
3n33 A:63-74,80-89,94-100,289-297
3n33 C:65-76,80-89,94-100,288-297
3n33 D:65-74,80-89,94-100,289-297
3n33 B:65-76,80-89,130-135,288-297
3n33 D:65-74,80-89,130-135,289-297
3n33 A:63-74,80-89,130-135,289-297
3n33 B:65-76,80-89,94-100,288-297
3msj B:232-237,237-253,282-289,330-335
3msj A:233-237,237-253,282-289,330-335
3msj C:232-237,237-253,282-289,330-335
2z4t A:51-62,68-75,76-82,87-99
2zvw E:1-9,8-24,45-54,57-63
2zvw A:1-9,8-24,45-54,57-63
2zvw F:1-9,8-24,45-54,57-63
2zvw H:1-9,8-24,45-54,57-63
2zvw B:1-9,8-24,45-54,57-63
2j1s A:22-27,34-41,52-57,59-67
2j1s B:22-27,34-41,52-57,61-67
2w1u A:808-813,822-829,834-839,847-855
2w1u B:805-814,822-829,834-839,847-856
3foh A:98-104,146-158,166-172,176-188
3foh F:98-104,146-158,166-172,176-188
3foh B:98-104,146-158,166-172,176-188
3foh E:98-104,146-158,166-172,176-188
3foh D:98-104,146-158,166-172,176-188
3foh C:98-104,146-158,166-172,176-188
3mj7 B:152-158,166-174,176-182,191-198
2x0r A:159-163,246-264,264-270,270-275
2x0r B:159-163,246-264,264-270,270-275
2xme K:109-116,121-131,133-139,174-180
2xme J:117-121,121-131,206-213,215-221
2xme I:109-116,121-131,133-139,174-180
2xme H:117-121,121-131,133-139,215-221
2xme G:109-116,121-131,133-139,174-180
2xme A:117-121,121-131,133-139,215-221
2xme A:109-116,121-131,133-139,174-180
2xme L:109-116,121-131,133-139,174-180
2xme E:117-121,121-131,133-139,215-221
2xme K:117-121,121-131,133-139,215-221
2xme K:117-121,121-131,206-213,215-221
2xme D:117-121,121-131,133-139,215-221
2xme E:117-121,121-131,206-213,215-221
2xme B:117-121,121-131,206-213,215-220
2xme A:117-121,121-131,206-213,215-221
2xme C:117-121,121-131,133-139,215-221
2xme G:117-121,121-131,206-213,215-221
2xme C:109-116,121-131,133-139,174-180
2xme J:109-116,121-131,133-139,174-180
2xme F:117-121,121-131,206-213,215-221
2xme J:117-121,121-131,133-139,215-221
2xme I:117-121,121-131,206-213,215-221
2xme H:117-121,121-131,206-213,215-221
2xme D:109-116,121-131,133-139,174-180
2xme G:117-121,121-131,133-139,215-221
2xme C:117-121,121-131,206-213,215-221
2xme B:109-116,121-131,133-139,174-180
2xme I:117-121,121-131,133-139,215-221
2xme D:117-121,121-131,206-213,215-221
2xme L:117-121,121-131,133-139,215-221
2xme E:109-116,121-131,133-139,174-180
2xme B:117-121,121-131,133-139,215-220
2xme L:117-121,121-131,206-213,215-221
2xme H:109-116,121-131,133-139,174-180
2xme F:109-116,121-131,133-139,174-180
2xme F:117-121,121-131,133-139,215-221
3tqz A:5-10,11-19,30-37,54-59
3pkp L:111-116,116-130,212-219,222-227
3pkp A:111-116,116-130,132-140,222-227
3pkp D:111-116,116-130,132-140,222-227
3pkp I:111-116,116-130,132-140,222-227
3pkp C:111-116,116-130,132-140,222-227
3pkp J:111-116,116-130,132-140,222-227
3pkp B:111-116,116-130,132-140,222-227
3pkp L:111-116,116-130,132-140,222-227
3pkp A:111-116,116-130,212-219,222-227
3pkp B:111-116,116-130,212-219,222-227
3pkp K:111-116,116-127,213-219,222-227
3pkp K:111-116,116-127,133-140,222-227
3eql K:49-59,74-86,127-134,134-148
3eql A:49-59,74-86,127-134,134-148
3eql L:49-59,74-86,127-134,134-148
3eql B:49-59,74-86,127-134,134-148
2drh C:66-75,82-90,95-101,278-287
2drh D:66-76,82-90,95-101,278-287
2drh A:66-77,82-90,95-101,277-287
2drh B:66-76,82-90,95-101,278-286
3l3a A:294-299,299-315,344-351,392-397
2ix2 A:133-139,139-154,176-182,187-193
2x60 B:109-113,114-133,134-141,257-261
3h3v D:45-55,59-71,140-148,151-160
3bpk B:79-86,87-100,123-127,130-147
3bpk A:79-86,87-100,123-127,130-146
3i25 A:232-237,237-253,281-289,330-335
3foa A:98-104,146-158,166-172,176-188
3foa B:96-109,146-158,166-171,177-189
3foa C:97-109,146-158,166-173,178-189
3foa D:97-109,146-158,166-172,176-189
3at0 A:428-437,458-466,472-480,484-493
3i63 E:12-20,21-36,56-60,80-84
3gtp C:42-55,59-70,144-148,149-163
3pi5 B:232-237,237-253,281-289,330-335
2avt A:1-7,7-23,51-60,67-71
2avt B:2-7,7-23,51-60,67-71
2j7m A:627-634,644-651,656-660,670-677
3hw1 C:233-237,237-253,282-289,330-334
3hw1 B:233-237,237-253,282-289,330-334
3lqa H:33-41,61-68,77-85,91-99
2gj2 D:8-15,17-28,52-57,70-77
2gj2 C:8-15,17-28,52-57,70-77
2gj2 A:8-15,17-28,52-57,70-76
3ge3 E:12-20,21-36,56-60,80-84
3aiz D:129-135,135-150,174-179,185-190
3h3y E:414-426,432-454,456-460,474-490
3h3y A:414-426,432-454,456-460,474-490
3h3y G:414-426,432-454,456-460,474-490
3h3y K:414-426,432-454,456-460,474-490
3h3y I:414-426,432-454,456-460,474-490
3h3y C:414-426,432-454,456-460,474-490
2yc4 B:10-17,24-31,36-40,43-52
2yc4 A:10-17,24-31,36-40,43-52
2qck A:70-77,78-91,106-111,113-122
3pge B:1-9,8-20,45-54,57-63
2vca A:32-37,45-52,57-61,65-72
3s2o A:232-237,237-253,282-289,330-335
3h3w C:414-426,432-454,456-460,474-490
3h3w A:414-426,432-454,456-460,474-490
3h3w I:414-426,432-454,456-460,474-490
3h3w K:414-426,432-454,456-460,474-490
3h3w E:414-426,432-454,456-460,474-490
3h3w G:414-426,432-454,456-460,474-490
2vcc A:32-37,45-52,57-61,65-72
3pav A:452-458,463-470,471-476,477-485
3lei A:53-58,65-72,83-88,90-98
3dhi E:12-20,20-36,56-60,80-84
3iyl Y:980-990,1095-1107,1114-1121,1129-1140
3iyl X:980-990,1095-1107,1114-1121,1131-1140
2zvm B:1-9,8-24,45-54,57-63
2zvm C:1-9,8-20,45-54,57-63
2zvm A:1-9,8-24,45-54,57-63
3gto C:42-55,59-70,144-148,149-163
2bf3 A:11-19,20-35,55-59,80-84
2bf3 B:11-19,20-35,55-59,81-85
2hii C:129-135,135-151,170-178,183-189
2hii Z:129-135,135-150,170-178,183-189
2hez A:74-82,103-112,124-129,139-147
2hez B:74-82,103-112,124-129,139-147
3nwa D:156-177,193-205,205-209,264-281
3nwa A:156-176,193-205,205-209,264-281
3nwa B:156-177,193-205,205-209,264-281
3msl A:232-237,237-253,281-289,330-335
3eyp A:353-359,366-373,378-382,386-394
3eyp B:353-359,366-373,378-382,386-394
3k75 C:7-13,20-27,32-36,41-49
3nfb D:63-76,80-89,130-135,288-297
3nfb C:63-76,80-89,130-135,288-297
3nfb A:63-74,80-89,94-100,289-297
3nfb C:63-76,80-89,94-100,288-297
3nfb B:63-74,80-89,94-100,289-297
3nfb B:63-74,80-89,130-135,289-297
3nfb D:63-76,80-89,94-100,288-297
3nfb A:63-74,80-89,130-135,289-297
2vc9 A:32-37,45-52,57-61,65-72
3f2z A:298-305,318-325,329-334,342-351
3fmr B:137-147,149-171,190-195,333-346
3l0x A:1-8,8-23,45-54,57-63
2d5m A:64-70,72-86,108-112,115-127
3gtm C:52-56,59-70,140-148,151-163
2zx0 B:18-28,51-63,66-72,86-96
2zx0 A:119-128,151-163,166-173,186-195
2zx0 A:18-28,51-63,66-72,86-96
2zx0 B:119-128,151-163,166-173,186-195
2gmk A:32-38,40-49,51-61,61-71
2qh5 B:112-116,116-134,254-260,262-266
2qh5 A:112-116,116-134,254-260,262-266
3ifv C:128-135,134-149,171-180,183-188
3ifv B:128-135,134-149,171-180,183-188
3pkq A:111-116,116-129,212-218,222-227
3pkq C:111-116,116-129,212-218,222-227
3pkq D:111-116,116-129,212-218,222-227
3pkq B:111-116,116-129,212-218,222-227
2j1v A:22-27,34-41,52-58,61-67
2j1v B:22-27,34-41,52-58,61-67
3nw8 B:156-177,193-205,205-209,262-281
3nw8 C:156-177,193-205,205-209,262-281
3nw8 D:156-177,193-205,205-209,262-281
3nw8 A:156-177,193-205,205-209,261-281
2j1a A:627-634,644-651,656-660,670-677
3sy6 A:93-99,103-114,114-120,129-134
3sy6 B:93-99,103-114,114-120,129-134
2hf0 B:74-82,103-112,124-129,139-147
2hf0 A:74-82,103-112,124-129,139-147
3hvg A:233-237,237-253,282-289,330-334
3hvg C:233-237,237-253,282-289,330-334
3hd8 C:242-246,247-264,301-307,347-351
3hd8 A:242-246,247-264,301-307,347-351
3mbq B:9-16,16-23,34-39,60-65
3dhh E:12-20,21-36,56-60,80-85
3foi A:98-104,146-158,166-172,176-188
3foi F:98-104,146-158,166-172,176-188
3foi B:98-104,146-158,166-172,176-188
3foi E:98-104,146-158,166-172,176-188
3foi D:98-104,146-158,166-172,176-188
3foi C:98-104,146-158,166-172,176-188
2ptu A:30-38,59-67,72-79,85-95
3dja B:396-402,498-512,518-524,538-552
3dja A:396-402,498-512,519-524,538-552
3gvh D:140-144,231-249,249-255,255-260
3dm6 C:232-237,237-253,282-289,329-335
3dm6 A:233-237,237-253,281-289,330-335
3dm6 B:232-237,237-253,282-289,330-335
2wdb A:808-813,822-829,834-839,847-855
2d36 A:63-70,72-82,99-104,106-115
2zx3 A:119-131,151-163,166-173,186-195
2zx3 A:18-28,51-63,66-72,86-96
2zx3 B:119-128,151-163,166-173,186-195
2zx3 B:18-28,51-63,66-72,86-96
3gfy A:150-155,363-374,377-381,394-399
3nsy A:452-459,463-470,471-476,477-485
3g65 B:16-23,23-35,58-67,71-76
3g65 A:142-148,148-160,192-201,204-209
3s7m A:295-299,299-315,344-351,392-396
3igb A:295-299,299-315,344-351,392-396
2bjf A:75-83,104-113,125-130,141-149
3rtn A:232-237,237-253,282-289,330-335
3kdr A:195-202,208-225,229-235,236-243
3kdr B:195-202,208-225,229-234,236-243
3gvi B:140-144,231-249,249-255,255-260
3inf A:295-299,299-315,344-351,392-396
2wjo A:233-237,237-253,282-289,330-334
2e3d B:137-141,149-163,253-259,262-266
2q11 A:233-237,237-253,282-289,330-334
2j22 A:20-25,32-39,50-55,59-65
2z71 C:75-83,101-113,125-130,141-149
2z71 A:75-83,101-113,126-130,141-149
2gif C:180-189,199-212,249-255,265-270
3h0b B:233-237,237-253,282-289,330-335
3h0b A:233-237,237-253,282-289,330-335
3h0b C:233-237,237-253,282-289,330-335
3i4n C:45-55,59-71,140-148,151-160
3b7m D:77-86,170-182,188-201,204-216
3b7m C:77-86,170-182,188-201,204-216
3b7m A:77-86,170-182,188-201,204-216
3b7m B:77-86,170-182,188-201,204-216
3hag A:188-197,247-256,272-288,296-311
2jx9 A:53-67,85-97,100-107,120-131
3tpl C:233-237,237-253,282-289,330-335
3tpl B:232-237,237-253,282-289,330-335
3tpl A:233-237,237-253,282-289,330-334
3nsf A:452-458,463-470,471-476,477-485
3ks7 D:82-95,192-200,201-210,214-228
3ks7 C:82-95,192-200,201-210,215-228
3ks7 B:82-95,192-200,201-210,214-228
3ks7 A:82-95,192-200,201-210,215-228
2xmh D:117-121,121-131,206-213,215-220
2xmh B:109-116,121-131,133-139,174-180
2xmh B:117-121,121-131,133-139,215-220
2xmh A:117-121,121-131,133-139,215-220
2xmh A:117-121,121-131,206-213,215-220
2xmh F:109-116,121-131,133-139,174-180
2xmh C:117-121,121-131,133-139,215-220
2xmh C:117-121,121-131,206-213,215-220
2xmh D:117-121,121-131,133-139,215-220
2xmh E:117-121,121-131,206-213,215-220
2xmh A:109-116,121-131,133-139,174-180
2xmh B:117-121,121-131,206-213,215-220
2xmh F:117-121,121-131,133-139,215-221
2xmh E:117-121,121-131,133-139,215-220
2xmh C:109-116,121-131,133-139,174-180
2xmh F:117-121,121-131,206-213,215-221
2wq8 A:14-19,26-33,38-42,51-59
3rth A:232-237,237-253,282-289,330-335
3tpr A:233-237,237-253,281-289,330-335
2kd7 A:10-16,29-36,41-45,53-61
2zvk C:1-7,8-24,45-54,58-63
2zvk B:1-9,8-24,45-54,58-63
2zvk A:1-7,8-24,45-54,58-63
2zvl C:1-9,8-24,45-54,57-63
2zvl E:1-7,8-24,45-54,57-63
2zvl A:1-9,8-24,45-54,57-63
2zvl F:1-9,8-24,45-54,57-63
2zvl D:1-9,8-24,45-54,57-63
2zvl B:1-7,8-24,45-54,57-63
3lek A:53-58,65-72,83-87,90-98
2jda A:9-16,25-32,37-41,42-51
2jda B:9-16,25-32,37-41,42-51
3fmq B:137-147,149-171,190-195,333-346
3gg1 A:150-155,363-374,377-381,394-399
2iwm D:78-86,104-116,129-133,144-152
2iwm B:78-86,104-116,128-133,144-152
2iwm C:78-86,104-116,129-133,144-152
3dv1 C:232-237,237-253,281-289,330-335
3dv1 A:233-237,237-253,281-289,330-335
3u6a B:232-237,237-253,282-289,330-335
3leg A:53-58,65-72,83-88,90-98
3pft B:70-76,80-89,106-111,113-122
3pft A:70-76,77-89,106-111,114-122
2vcb A:32-37,45-52,57-61,65-72
3hn3 B:117-125,153-160,165-174,216-224
3rjr D:120-131,171-182,185-193,227-234
3rjr B:120-131,171-182,185-193,227-234
3rjr C:120-131,171-182,185-193,227-234
3rjr A:120-131,171-182,185-193,227-234
3gg0 A:150-154,363-374,377-381,395-399
2jd9 A:9-16,25-32,37-41,42-51
3l0w A:1-8,8-23,45-54,57-63
3le0 A:53-58,65-72,83-88,90-98
2w3y A:135-139,141-152,260-267,268-272
2nti I:129-135,135-151,170-178,183-189
2nti E:1-7,8-23,45-54,57-63
2nti F:129-135,135-150,170-178,183-189
2nti D:1-8,8-24,45-54,57-63
2nti H:1-7,8-23,45-54,57-63
2nti A:1-8,8-24,45-54,57-63
2nti C:129-135,135-150,170-178,183-189
2nti B:1-7,8-23,45-54,57-63
2yxw B:452-458,463-470,471-477,478-485
2yxw A:452-458,463-470,471-476,477-485
2v72 A:10-16,23-30,35-39,47-55
3aw5 A:400-407,409-416,431-437,438-447
2zx1 A:119-131,151-163,166-173,186-195
2zx1 A:18-28,51-63,66-72,86-96
2zx1 B:119-128,151-163,166-173,186-195
2zx1 B:18-28,53-63,66-72,86-96
3l38 A:295-299,299-315,344-351,392-396
3rzd C:52-56,59-70,140-148,151-163
2j1e A:627-634,644-651,656-660,670-677
2yxv B:452-458,463-470,471-477,477-485
2yxv A:452-458,463-470,471-476,477-485
2yc2 B:10-17,24-31,36-40,43-52
2yc2 A:10-17,24-31,36-40,43-52
2d38 A:63-70,72-82,99-104,107-115
3hnm A:17-24,40-47,52-56,64-72
2bk2 A:73-90,210-217,219-236,374-390
3mji B:78-86,104-116,128-132,144-152
3mji C:78-86,104-116,129-133,144-152
3mji D:78-86,104-116,129-133,144-152
2ggo A:99-103,104-115,197-202,205-209
2orx A:446-450,449-456,470-475,483-489
2jjt D:35-43,69-76,76-83,92-101
2jjt C:35-43,69-76,76-83,92-101
3jz7 A:171-179,185-193,195-201,207-217
2x5z B:109-113,114-133,248-254,257-261
2npl X:32-40,45-55,56-63,66-78
2hik Z:129-135,135-151,170-178,183-189
2hik N:129-135,135-151,170-178,183-189
2hik C:129-135,135-151,170-178,183-189
3n5i A:65-74,80-89,94-100,287-297
3n5i D:65-74,80-89,94-100,287-297
3n5i A:65-74,80-89,130-135,287-297
3n5i B:65-76,80-89,130-135,287-297
3n5i C:65-74,80-89,130-135,287-297
3n5i D:65-74,80-89,130-135,287-297
3n5i B:65-76,80-89,94-100,287-297
3n5i C:65-74,80-89,94-100,287-297
3dxj K:49-59,74-86,119-124,134-148
3dxj A:49-59,74-85,126-134,134-148
3dxj B:49-59,74-86,127-134,134-146
2o5i A:49-59,74-86,127-134,134-148
2c7c K:410-415,461-473,476-481,493-497
3bik A:53-60,78-85,95-103,109-118
2o5j A:49-59,74-86,127-134,134-148
2o5j K:49-59,74-86,127-134,134-148
2o5j B:49-59,74-86,127-134,134-148