1. d.87.1 FAD/NAD-linked reductases, dimerisation (C-terminal) domain both first two domains are of same beta/beta/alpha fold ! CO dehydrogenase flavoprotein C-domain-like core: beta(3,4)-alpha(3); alpha+beta sandwich 1xdi d1xdib2 B:411-421,422-437,439-447,452-465 1xdi d1xdia2 A:410-421,422-437,439-447,452-465 1dxl d1dxld3 D:409-420,421-436,438-446,451-466 1dxl d1dxlc3 C:409-420,421-436,438-446,451-466 1jeh d1jehb3 B:417-428,429-444,446-454,459-474 1v59 d1v59b3 B:417-428,429-444,446-454,459-474 1jeh d1jeha3 A:417-428,429-444,446-454,459-474 1v59 d1v59a3 A:417-428,429-444,446-454,459-474 1dxl d1dxlb3 B:409-420,421-436,438-446,451-466 1dxl d1dxla3 A:409-420,421-436,438-446,451-466 1ojt d1ojta3 A:532-543,544-559,561-569,574-588 1bhy d1bhya3 A:532-543,544-559,561-569,574-588 1ebd d1ebda3 A:406-416,418-433,435-443,448-461 1ebd d1ebdb3 B:406-416,418-433,435-443,448-461 1lpf d1lpfb3 B:410-421,422-437,439-446,452-466 1lvl d1lvla3 A:397-408,409-424,426-434,439-453 1lpf d1lpfa3 A:410-420,422-437,439-446,452-466 3lad d3lada3 A:410-420,422-437,439-446,452-466 3lad d3ladb3 B:410-420,422-437,439-446,452-466 1joa d1joaa3 A:383-394,397-411,413-420,433-447 1nhs d1nhsa3 A:383-394,397-411,413-420,433-447 1f8w d1f8wa3 A:383-394,397-411,413-420,433-447 1nhp d1nhpa3 A:383-394,397-411,413-420,433-447 1nhr d1nhra3 A:383-394,397-411,413-420,433-447 1npx d1npxa3 A:383-394,397-411,413-420,433-447 1nhq d1nhqa3 A:383-394,397-411,413-420,433-447 2npx d2npxa3 A:383-394,396-411,413-420,433-447 1fea d1feaa3 A:420-430,432-447,449-457,462-471 1aog d1aogb3 B:421-431,433-448,450-458,463-472 1bzl d1bzla3 A:421-431,433-448,450-458,463-472 1tyt d1tyta3 A:421-431,433-448,450-458,463-472 1typ d1typb3 B:421-431,433-448,450-458,463-472 1bzl d1bzlb3 B:421-432,433-448,450-458,463-472 1nda d1ndac3 C:420-431,432-447,449-457,462-471 1nda d1ndaa3 A:420-431,432-447,449-457,462-471 1nda d1ndab3 B:420-431,432-447,449-457,462-471 1nda d1ndad3 D:420-431,432-447,449-457,462-471 4grt d4grta3 A:428-438,439-454,456-464,469-477 1grt d1grta3 A:428-438,439-454,456-464,469-477 2grt d2grta3 A:428-437,439-454,456-464,469-477 4gr1 d4gr1a3 A:428-438,439-454,456-464,469-477 1ger d1gera3 A:400-409,415-426,428-436,441-449 1ges d1gesb3 B:400-409,415-426,428-436,441-449 1get d1geta3 A:400-409,415-426,428-436,441-449 1geu d1geub3 B:400-409,415-426,428-436,441-449 1get d1getb3 B:399-410,415-426,428-436,441-449 1ger d1gerb3 B:400-409,415-426,428-436,441-449 1gra d1graa3 A:428-438,439-454,456-464,469-477 3grt d3grta3 A:428-437,439-454,456-464,469-477 1gre d1grea3 A:428-438,439-454,456-464,469-477 1geu d1geua3 A:400-409,410-426,428-436,441-449 1grb d1grba3 A:428-438,439-454,456-464,469-477 1grf d1grfa3 A:428-438,439-454,456-464,469-477 1grg d1grga3 A:428-438,439-454,456-464,469-477 1ges d1gesa3 A:400-409,415-426,428-436,441-449 1gsn d1gsna3 A:428-438,439-454,456-464,469-477 3grs d3grsa3 A:428-438,439-454,456-464,469-477 1xan d1xana3 A:428-438,439-454,456-464,469-477 5grt d5grta3 A:428-438,439-454,456-464,469-477 1bwc d1bwca3 A:428-438,439-454,456-464,469-477 1dnc d1dnca3 A:428-438,439-454,456-464,469-477 1k4q d1k4qa3 A:428-438,439-454,456-464,469-477 1onf d1onfa3 A:444-454,456-471,473-481,486-494 2c3c d2c3cb3 B:461-471,479-488,490-497,506-518 1mo9 d1mo9b3 B:461-471,479-488,490-497,506-518 1feb d1febb3 B:420-430,432-447,449-457,462-470 2c3c d2c3ca3 A:461-471,479-488,490-497,505-518 1h6v d1h6vb3 B:433-442,444-459,461-469,474-482 1h6v d1h6vd3 D:433-442,444-459,461-469,474-482 1h6v d1h6va3 A:433-442,444-459,461-469,474-482 1h6v d1h6vf3 F:433-442,444-459,461-469,474-482 1h6v d1h6ve3 E:433-442,444-459,461-469,474-482 1fec d1fecb3 B:420-430,432-447,449-457,462-470 2c3d d2c3db3 B:461-471,479-488,490-497,506-518 2c3d d2c3da3 A:461-471,479-488,490-497,506-518 1typ d1typa3 A:421-431,433-448,450-458,463-471 1gxf d1gxfb3 B:421-431,433-448,450-458,463-471 1mo9 d1mo9a3 A:461-471,479-488,490-497,505-518 2tpr d2tprb3 B:420-430,432-447,449-457,462-470 1fec d1feca3 A:420-430,432-447,449-457,462-470 1gxf d1gxfa3 A:421-431,433-448,450-458,463-471 1aog d1aoga3 A:421-431,433-448,450-458,463-471 1h6v d1h6vc3 C:433-442,444-459,461-469,474-482 1fea d1feab3 B:420-430,432-447,449-457,462-470 1fea d1fead3 D:420-431,432-447,449-457,462-470 2tpr d2tpra3 A:420-431,432-447,449-457,462-470 1mok d1mokc3 C:461-471,479-488,490-497,505-518 1tyt d1tytb3 B:421-432,433-448,450-458,463-471 1fea d1feac3 C:420-431,432-447,449-457,462-470 1mok d1mokd3 D:461-471,479-488,490-497,506-518 1mok d1moka3 A:461-471,479-488,490-497,505-518 1feb d1feba3 A:420-431,432-447,449-457,462-470 1mok d1mokb3 B:461-471,479-488,490-497,506-518 2. d.207.1 Thymidylate synthase-complementing protein Thy1 Thymidylate synthase-complementing protein Thy1 complex alpha+beta fold; contains antiparallel 5-stranded beta-sheet: order 12354 1kq4 d1kq4b_ B:60-69,69-80,163-177,180-199 1o24 d1o24c_ C:60-69,69-80,163-177,180-199 1o27 d1o27c_ C:60-69,69-80,163-177,180-199 1kq4 d1kq4c_ C:60-69,69-80,163-177,180-199 1o2a d1o2ad_ D:60-69,69-80,163-177,180-199 1o2b d1o2ba_ A:60-69,69-80,163-177,180-199 1o29 d1o29c_ C:60-69,69-80,163-177,180-199 1o29 d1o29d_ D:60-69,69-80,163-177,180-199 1o29 d1o29b_ B:60-69,69-80,163-177,180-199 1o25 d1o25b_ B:60-69,69-80,163-177,180-199 1o29 d1o29a_ A:60-69,69-80,163-177,180-199 1o26 d1o26b_ B:60-69,69-80,163-177,180-199 1o26 d1o26c_ C:60-69,69-80,163-177,180-199 1o26 d1o26d_ D:60-69,69-80,163-177,180-199 1o24 d1o24b_ B:60-69,69-80,163-177,180-199 1o28 d1o28b_ B:60-69,69-80,163-177,180-199 1o2b d1o2bd_ D:60-69,69-80,163-177,180-199 1o27 d1o27d_ D:60-69,69-80,163-177,180-199 1o26 d1o26a_ A:60-69,69-80,163-177,180-199 1o27 d1o27b_ B:60-69,69-80,163-177,180-199 1o2b d1o2bb_ B:60-69,69-80,163-177,180-199 1o25 d1o25c_ C:60-69,69-80,163-177,180-199 1o25 d1o25d_ D:60-69,69-80,163-177,180-199 1o2b d1o2bc_ C:60-69,69-80,163-177,180-199 1kq4 d1kq4a_ A:60-69,69-80,163-176,180-199 1o24 d1o24a_ A:60-69,69-80,163-176,180-199 1o2a d1o2ac_ C:60-69,69-80,163-176,180-199 1o2a d1o2aa_ A:60-69,69-80,163-176,180-199 1o28 d1o28c_ C:60-69,69-80,163-176,180-199 1o2a d1o2ab_ B:60-69,69-80,163-176,180-199 1kq4 d1kq4d_ D:60-69,69-80,163-176,180-199 1o25 d1o25a_ A:60-69,69-80,163-176,180-199 1o24 d1o24d_ D:60-69,69-80,163-176,180-199 1o28 d1o28d_ D:60-69,69-80,163-176,180-199 1o27 d1o27a_ A:60-69,69-80,163-176,180-199 1o28 d1o28a_ A:60-69,69-80,163-176,180-199 3. c.8.5 GroEL apical domain-like The "swivelling" beta/beta/alpha domain 3 layers: b/b/a; the central sheet is parallel, and the other one is antiparallel; there are some variations in topology ! this domain is thought to be mobile in most multi-domain proteins known to contain it 1wf4 d1wf4l2 L:190-199,280-296,337-356,357-374 1we3 d1we3l2 L:190-199,280-296,337-356,357-374 1wf4 d1wf4i2 I:190-199,280-296,337-356,357-374 1we3 d1we3h2 H:190-199,280-296,337-356,357-374 1wf4 d1wf4n2 N:190-199,280-296,337-356,357-374 1we3 d1we3k2 K:190-199,280-296,337-356,357-374 1we3 d1we3m2 M:190-199,280-296,337-356,357-374 1we3 d1we3i2 I:190-199,280-296,337-356,357-374 1wf4 d1wf4j2 J:190-199,280-296,337-356,357-374 1we3 d1we3j2 J:190-199,280-296,337-356,357-374 1wf4 d1wf4h2 H:190-199,280-296,337-356,357-374 1wf4 d1wf4m2 M:190-199,280-296,337-356,357-374 1wf4 d1wf4k2 K:190-199,280-296,337-356,357-374 1we3 d1we3n2 N:190-199,280-296,337-356,357-374 1wf4 d1wf4c2 C:191-197,280-296,337-356,357-373 1wf4 d1wf4g2 G:191-197,280-296,337-356,357-373 1we3 d1we3e2 E:191-197,280-296,337-356,357-373 1iok d1iokg2 G:191-198,281-297,338-356,358-375 1iok d1iokc2 C:191-198,281-297,338-356,358-375 1aon d1aonn2 N:191-197,281-297,338-356,358-375 1iok d1iokd2 D:191-198,281-297,338-356,358-375 1iok d1iokb2 B:191-198,281-297,338-356,358-375 1iok d1ioka2 A:191-198,281-297,338-356,358-375 1iok d1ioke2 E:191-198,281-297,338-356,358-375 1iok d1iokf2 F:191-198,281-297,338-356,358-375 1aon d1aonm2 M:191-197,281-297,338-356,358-375 1sjp d1sjpb2 B:188-195,278-294,335-353,355-372 1aon d1aoni2 I:191-198,281-297,338-356,358-375 1aon d1aonj2 J:191-197,280-297,338-356,358-375 1aon d1aonh2 H:191-197,281-297,338-356,358-375 1pf9 d1pf9l2 L:191-198,281-297,338-356,358-375 1pf9 d1pf9k2 K:191-198,281-297,338-356,358-375 1pf9 d1pf9h2 H:191-198,281-297,338-356,358-375 1pf9 d1pf9m2 M:191-198,281-297,338-356,358-375 1aon d1aonk2 K:191-197,280-297,338-356,358-375 1aon d1aonc2 C:193-197,281-297,338-355,362-374 1pcq d1pcqi2 I:191-197,281-297,338-356,358-375 1pf9 d1pf9n2 N:191-198,281-297,338-356,358-375 1pf9 d1pf9j2 J:191-198,281-297,338-356,358-375 1pcq d1pcql2 L:191-197,281-297,338-356,358-375 1pcq d1pcqm2 M:191-197,281-297,338-356,358-375 1pcq d1pcqn2 N:191-197,281-297,338-356,358-375 1pcq d1pcqk2 K:191-197,281-297,338-356,358-375 1pcq d1pcqh2 H:191-197,281-297,338-356,358-375 1pcq d1pcqj2 J:191-197,281-297,338-356,358-375 1aon d1aonl2 L:191-197,280-297,338-356,358-375 1pf9 d1pf9i2 I:191-197,281-297,338-356,358-375 1mnf d1mnfe2 E:191-198,281-297,338-356,358-375 1mnf d1mnfj2 J:191-198,281-297,338-356,358-375 1mnf d1mnfl2 L:191-198,281-297,338-356,358-375 1kp8 d1kp8n2 N:191-198,281-297,338-356,358-375 1kp8 d1kp8h2 H:191-198,281-297,338-356,358-375 1mnf d1mnfg2 G:191-197,281-297,338-356,358-375 1mnf d1mnff2 F:191-197,281-297,338-356,358-375 1kpo d1kpop2 P:191-197,281-297,338-356,358-375 1kpo d1kpo22 2:191-197,281-297,338-356,358-375 1kpo d1kpos2 S:191-197,281-297,338-356,358-375 1j4z d1j4za2 A:191-197,281-297,338-356,358-375 1kp8 d1kp8k2 K:191-198,281-297,338-356,358-375 1mnf d1mnfk2 K:191-197,281-297,338-356,358-375 1j4z d1j4zc2 C:191-197,281-297,338-356,358-375 1kp8 d1kp8a2 A:191-198,281-297,338-356,358-375 1j4z d1j4zf2 F:191-197,281-297,338-356,358-375 1kpo d1kpot2 T:191-197,281-297,338-356,358-375 1j4z d1j4zj2 J:191-197,281-297,338-356,358-375 1kpo d1kpoq2 Q:191-197,281-297,338-356,358-375 1mnf d1mnfd2 D:191-197,281-297,338-356,358-375 1kpo d1kpoz2 Z:191-197,281-297,338-356,358-375 1kpo d1kpox2 X:191-197,281-297,338-356,358-375 1kpo d1kpoo2 O:191-197,281-297,338-356,358-375 1j4z d1j4zh2 H:191-197,281-297,338-356,358-375 1j4z d1j4zg2 G:191-197,281-297,338-356,358-375 1kpo d1kpou2 U:191-197,281-297,338-356,358-375 1j4z d1j4ze2 E:191-197,281-297,338-356,358-375 1j4z d1j4zb2 B:191-197,281-297,338-356,358-375 1kpo d1kpow2 W:191-197,281-297,338-356,358-375 1kp8 d1kp8i2 I:191-198,281-297,338-356,358-375 1j4z d1j4zl2 L:191-197,281-297,338-356,358-375 1kpo d1kpor2 R:191-197,281-297,338-356,358-375 1mnf d1mnfc2 C:191-197,281-297,338-356,358-375 1j4z d1j4zk2 K:191-197,281-297,338-356,358-375 1mnf d1mnfa2 A:191-197,281-297,338-356,358-375 1j4z d1j4zd2 D:191-197,281-297,338-356,358-375 1j4z d1j4zm2 M:191-197,281-297,338-356,358-375 1mnf d1mnfn2 N:191-197,281-297,338-356,358-375 1kpo d1kpoy2 Y:191-197,281-297,338-356,358-375 1j4z d1j4zn2 N:191-197,281-297,338-356,358-375 1kp8 d1kp8m2 M:191-198,281-297,338-356,358-375 1kp8 d1kp8c2 C:191-197,281-297,338-356,358-375 1kpo d1kpov2 V:191-197,281-297,338-356,358-375 1j4z d1j4zi2 I:191-197,281-297,338-356,358-375 1kpo d1kpo12 1:191-197,281-297,338-356,358-375 1kp8 d1kp8f2 F:191-198,281-297,338-356,358-375 1mnf d1mnfm2 M:191-197,281-297,338-356,358-375 1mnf d1mnfh2 H:191-197,281-297,338-356,358-375 1mnf d1mnfi2 I:191-197,281-297,338-356,358-375 1kp8 d1kp8g2 G:191-197,281-297,338-356,358-375 1kp8 d1kp8b2 B:191-197,281-297,338-356,358-375 1mnf d1mnfb2 B:191-197,281-297,338-356,358-375 1kp8 d1kp8d2 D:191-197,281-297,338-356,358-375 1kp8 d1kp8l2 L:191-197,281-297,338-356,358-375 1kp8 d1kp8e2 E:191-197,281-297,338-356,358-375 1kp8 d1kp8j2 J:191-197,281-297,338-356,358-375 1we3 d1we3g2 G:191-197,280-296,337-355,357-373 1we3 d1we3b2 B:191-197,280-296,337-355,357-373 1wf4 d1wf4d2 D:191-197,280-296,337-355,357-373 1wf4 d1wf4b2 B:191-197,280-296,337-355,357-373 1we3 d1we3c2 C:191-197,280-296,337-355,357-373 1we3 d1we3d2 D:191-196,280-296,337-355,357-373 1wf4 d1wf4f2 F:191-197,280-296,337-355,357-373 1we3 d1we3a2 A:191-197,280-296,337-355,357-373 1we3 d1we3f2 F:191-197,280-296,337-355,357-373 1wf4 d1wf4a2 A:191-196,280-296,337-355,357-373 1sjp d1sjpa2 A:188-195,278-294,335-354,355-372 1aon d1aonb2 B:193-197,281-297,338-355,360-374 1grl d1grla2 A:191-195,281-297,338-357,359-375 1grl d1grlc2 C:191-195,281-297,338-357,359-375 1grl d1grlb2 B:191-195,281-297,338-357,359-375 1grl d1grle2 E:191-195,281-297,338-357,359-375 1grl d1grld2 D:191-195,281-297,338-357,359-375 1grl d1grlg2 G:191-195,281-297,338-357,359-375 1grl d1grlf2 F:191-195,281-297,338-357,359-375 1oel d1oele2 E:191-195,281-297,338-356,358-375 1oel d1oela2 A:191-195,281-297,338-356,358-375 1oel d1oelb2 B:191-195,281-297,338-356,358-375 1oel d1oelg2 G:191-195,281-297,338-356,358-375 1oel d1oeld2 D:191-195,281-297,338-356,358-375 1oel d1oelf2 F:191-195,281-297,338-356,358-375 1oel d1oelc3 C:191-195,281-297,338-356,358-375 1aon d1aona2 A:193-197,281-297,338-355,357-373 1pcq d1pcqf2 F:192-199,281-297,338-356,358-374 1pcq d1pcqb2 B:192-199,281-297,338-356,358-374 1pcq d1pcqg2 G:192-199,281-297,338-356,358-374 1pcq d1pcqc2 C:192-199,281-297,338-356,358-374 1pcq d1pcqe2 E:192-199,281-297,338-356,358-374 1pcq d1pcqa2 A:192-199,281-297,338-356,358-374 1pcq d1pcqd2 D:192-199,281-297,338-356,358-374 1la1 d1la1a_ A:192-200,281-297,338-356,358-376 1wf4 d1wf4e2 E:191-199,280-296,337-355,357-373 1pf9 d1pf9d2 D:192-200,281-297,338-356,358-374 1pf9 d1pf9a2 A:192-200,281-297,338-356,358-374 9. d.54.1 Enolase N-terminal domain-like Enolase N-terminal domain-like beta(3)-alpha(3); meander and up-and-down bundle 1iyx d1iyxb2 B:1-13,72-81,85-98,106-126 1w6t d1w6ta2 A:2-14,73-82,86-99,107-127 1w6t d1w6tb2 B:2-14,73-82,86-99,107-127 1iyx d1iyxa2 A:2-13,72-81,85-98,106-126 1jct d1jcta2 A:48-57,58-75,79-92,107-129 1kd0 d1kd0b2 B:1-13,85-104,108-119,127-147 1kd0 d1kd0a2 A:1-13,85-104,108-119,127-147 2al1 d2al1a2 A:1-12,70-80,85-98,106-126 1kcz d1kczb2 B:1-13,85-104,108-119,127-147 1kcz d1kcza2 A:1-13,85-104,108-119,127-147 2al2 d2al2a2 A:1-12,70-80,85-98,106-126 2akm d2akmb2 B:2-12,61-80,85-98,106-126 1kkr d1kkrb2 B:1-13,85-104,108-119,127-147 2akz d2akzb2 B:1002-1012,1061-1080,1085-1098,1106-1126 1kkr d1kkra2 A:1-13,85-104,108-119,127-147 2akz d2akza2 A:2-12,61-80,85-98,106-126 1jdf d1jdfc2 C:48-57,58-75,76-92,107-129 1jdf d1jdfb2 B:48-57,58-75,76-92,107-129 1te6 d1te6b2 B:2-12,61-80,85-98,106-126 1ec7 d1ec7d2 D:48-57,58-75,76-92,107-129 1ec8 d1ec8a2 A:48-57,58-75,76-92,107-129 1tzz d1tzza2 A:1006-1018,1070-1079,1092-1102,1109-1132 1jdf d1jdfa2 A:48-57,58-75,76-92,107-129 1te6 d1te6a2 A:2-12,61-80,85-98,106-126 1l8p d1l8pc2 C:1001-1012,1061-1080,1085-1098,1106-1126 2one d2onea2 A:1-12,61-80,85-98,106-126 2akm d2akma2 A:2-12,61-80,85-98,106-126 1p43 d1p43a2 A:1-12,61-80,85-98,106-126 1l8p d1l8pa2 A:1-12,61-80,85-98,106-126 1ebh d1ebha2 A:1-12,61-80,85-98,106-126 1one d1onea2 A:1-12,61-80,85-98,106-126 1ebg d1ebga2 A:1-12,61-80,85-98,106-126 1p43 d1p43b2 B:501-512,561-580,585-598,606-626 1p48 d1p48a2 A:1-12,61-80,85-98,106-126 1one d1oneb2 B:1-12,61-80,85-98,106-126 2al1 d2al1b2 B:1-12,61-80,85-98,106-126 1ebh d1ebhb2 B:1-12,61-80,85-98,106-126 1ebg d1ebgb2 B:1-12,61-80,85-98,106-126 2one d2oneb2 B:1-12,61-80,85-98,106-126 1l8p d1l8pd2 D:1501-1512,1561-1580,1585-1598,1606-1626 1p48 d1p48b2 B:501-512,561-580,585-598,606-626 1l8p d1l8pb2 B:501-512,561-580,585-598,606-626 2al2 d2al2b2 B:1-12,61-80,85-98,106-126 1e9i d1e9id2 D:1-13,63-79,85-98,106-126 1e9i d1e9ic2 C:1-13,63-79,85-98,106-126 1jdf d1jdfb2 B:8-22,58-75,76-92,107-129 1tzz d1tzzb2 B:2006-2018,2070-2078,2092-2102,2109-2132 1ecq d1ecqb2 B:48-57,58-73,79-92,107-129 1e9i d1e9ib2 B:1-13,63-79,85-98,106-126 1ec8 d1ec8a2 A:8-22,58-75,76-92,107-129 2fym d2fymd2 D:1-13,63-79,85-98,106-126 1e9i d1e9ia2 A:1-13,63-79,85-98,106-126 2fym d2fymc2 C:1-13,63-79,85-98,106-126 2fym d2fymf2 F:1-13,63-79,85-98,106-126 1ec8 d1ec8b2 B:48-57,58-73,79-92,107-129 1kko d1kkoa2 A:2-13,85-104,108-119,127-147 2fym d2fyma2 A:1-13,63-79,85-98,106-126 7enl d7enla2 A:1-13,70-80,85-98,106-126 1jdf d1jdfc2 C:8-22,58-75,76-92,107-129 1els d1elsa2 A:1-13,61-80,85-98,106-126 6enl d6enla2 A:1-13,61-80,85-98,106-126 4enl d4enla2 A:1-13,61-80,85-98,106-126 1nel d1nela2 A:1-13,61-80,85-98,106-126 1sjb d1sjbc2 C:2-15,70-79,82-94,96-116 1ecq d1ecqb2 B:8-22,58-73,79-92,107-129 1ec8 d1ec8b2 B:8-22,58-73,79-92,107-129 1jct d1jctb2 B:48-57,58-75,76-96,107-129 1sjb d1sjbd2 D:2-15,70-79,82-94,96-116 1sjc d1sjcd2 D:2-15,70-79,82-94,96-116 1yey d1yeyb2 B:47-57,59-75,96-104,106-129 1yey d1yeyd2 D:47-57,59-75,96-104,106-129 3enl d3enla2 A:1-13,61-80,85-98,106-126 1sjd d1sjdc2 C:2-15,70-79,82-94,96-116 5enl d5enla2 A:1-13,61-80,85-98,106-126 1bqg d1bqga2 A:54-63,64-79,85-98,111-135 1yey d1yeya2 A:47-57,59-75,96-104,106-129 1sjd d1sjdd2 D:2-15,70-79,82-94,96-116 2ptz d2ptza2 A:2-14,62-78,84-97,105-125 1yey d1yeyc2 C:47-57,59-75,96-104,106-129 2dw7 d2dw7p2 P:4-17,60-76,89-99,106-129 1ec9 d1ec9b2 B:48-57,58-73,76-92,107-129 1ec7 d1ec7b2 B:48-57,58-73,76-92,107-129 1ec7 d1ec7c2 C:48-57,58-73,76-92,107-129 2dw7 d2dw7m2 M:3-18,60-76,89-99,106-129 2gl5 d2gl5a2 A:35-46,49-65,71-84,89-113 1ec9 d1ec9d2 D:48-57,58-73,76-92,107-129 2gl5 d2gl5b2 B:35-46,49-65,71-84,89-113 2dw6 d2dw6d2 D:3-18,60-76,89-99,106-129 1jdf d1jdfd2 D:48-57,58-73,76-92,107-129 1ec9 d1ec9c2 C:48-57,58-73,76-92,107-129 1ecq d1ecqc2 C:48-57,58-73,76-92,107-129 1ec8 d1ec8c2 C:48-57,58-73,76-92,107-129 1ec8 d1ec8d2 D:48-57,58-73,76-92,107-129 1ecq d1ecqa2 A:48-57,58-73,76-92,107-129 1ec9 d1ec9a2 A:48-57,58-73,76-92,107-129 1wue d1wueb2 B:2002-2015,2071-2080,2083-2095,2097-2117 2dw7 d2dw7k2 K:3-18,60-76,89-99,106-129 2dw7 d2dw7l2 L:3-18,60-76,89-99,106-129 1ec7 d1ec7a2 A:48-57,58-73,76-92,107-129 2dw7 d2dw7c2 C:3-18,60-76,89-99,106-129 1jct d1jcta2 A:8-24,58-75,79-92,107-129 1pdz d1pdza2 A:2-13,61-80,85-98,106-126 2gl5 d2gl5b2 B:1-13,49-65,71-84,89-113 2gl5 d2gl5a2 A:1-13,49-65,71-84,89-113 2dw7 d2dw7i2 I:3-18,60-76,89-99,106-129 1ecq d1ecqd2 D:48-57,58-73,76-92,107-129 1pdy d1pdya2 A:2-13,61-80,85-98,106-126 2dw7 d2dw7o2 O:3-18,60-76,89-99,106-129 2dw7 d2dw7f2 F:3-18,67-75,89-99,106-129 2dw7 d2dw7j2 J:3-18,67-75,89-99,106-129 2dw7 d2dw7n2 N:3-18,67-75,89-99,106-129 1kcz d1kczb2 B:62-70,85-104,108-119,127-147 1kd0 d1kd0b2 B:62-70,85-104,108-119,127-147 2dw7 d2dw7d2 D:3-18,67-75,89-99,106-129 2dw7 d2dw7e2 E:3-18,67-75,89-99,106-129 2dw7 d2dw7b2 B:3-18,67-75,89-99,106-129 1ec7 d1ec7d2 D:8-24,58-75,76-92,107-129 1kd0 d1kd0a2 A:62-70,85-104,108-119,127-147 2dw7 d2dw7g2 G:3-18,67-75,89-99,106-129 2dw7 d2dw7a2 A:3-18,67-75,89-99,106-129 1oep d1oepa2 A:3-14,62-78,84-97,105-125 1sja d1sjad2 D:3-15,70-79,82-94,96-116 1kcz d1kcza2 A:62-70,85-104,108-119,127-147 1jdf d1jdfa2 A:8-24,58-75,76-92,107-129 1sjb d1sjba2 A:3-15,70-79,82-94,96-116 1sja d1sjab2 B:3-15,70-79,82-94,96-116 2dw7 d2dw7h2 H:4-18,60-76,89-99,106-129 1sja d1sjac2 C:3-15,70-79,82-94,96-116 1sjc d1sjcb2 B:3-15,70-79,82-94,96-116 1wue d1wuea2 A:1002-1016,1071-1080,1083-1095,1097-1117 1sjd d1sjda2 A:3-15,70-79,82-94,96-116 1sjc d1sjcc2 C:3-15,70-79,82-94,96-116 1sja d1sjaa2 A:3-15,70-79,82-94,96-116 1sjc d1sjca2 A:3-15,70-79,82-94,96-116 1sjd d1sjdb2 B:3-15,70-79,82-94,96-116 1ec9 d1ec9b2 B:8-23,58-73,76-92,107-129 2dw6 d2dw6c2 C:4-18,67-75,89-99,106-129 2dw6 d2dw6b2 B:4-18,67-75,89-99,106-129 2dw6 d2dw6a2 A:4-18,67-75,89-99,106-129 1ec9 d1ec9d2 D:8-23,58-73,76-92,107-129 1bqg d1bqga2 A:14-29,64-79,85-98,111-135 1mra d1mraa2 A:4-17,55-74,79-95,97-120 1mra d1mraa2 A:44-53,55-74,79-95,97-120 1jct d1jctb2 B:8-24,58-75,76-96,107-129 2al2 d2al2a2 A:1-12,61-71,85-98,106-126 2al1 d2al1a2 A:1-12,61-71,85-98,106-126 1ec7 d1ec7b2 B:8-24,58-73,76-92,107-129 2chr d2chra2 A:40-48,59-71,82-95,97-117 1dtn d1dtna2 A:44-53,55-74,79-95,97-120 1mns d1mnsa2 A:4-17,55-74,79-95,97-120 1mdl d1mdla2 A:44-53,55-74,79-95,97-120 2mnr d2mnra2 A:4-17,55-74,79-92,97-120 1mns d1mnsa2 A:44-53,55-74,79-95,97-120 1yey d1yeya2 A:2-17,59-75,96-104,106-129 1nu5 d1nu5a2 A:40-48,59-71,82-95,97-117 1ec9 d1ec9a2 A:8-24,58-73,76-92,107-129 1ec8 d1ec8d2 D:8-24,58-73,76-92,107-129 1yey d1yeyd2 D:2-17,59-75,96-104,106-129 1ec7 d1ec7c2 C:8-24,58-73,76-92,107-129 1ecq d1ecqa2 A:8-24,58-73,76-92,107-129 1dtn d1dtna2 A:4-18,55-74,79-95,97-120 1ec9 d1ec9c2 C:8-24,58-73,76-92,107-129 1tkk d1tkkc2 C:41-49,58-70,81-94,96-116 1ec7 d1ec7a2 A:8-24,58-73,76-92,107-129 1bkh d1bkha2 A:4-17,63-75,86-99,101-121 1ecq d1ecqc2 C:8-24,58-73,76-92,107-129 1tkk d1tkkb2 B:41-49,58-70,81-94,96-116 1ec8 d1ec8c2 C:8-24,58-73,76-92,107-129 1mdl d1mdla2 A:4-18,55-74,79-95,97-120 1ecq d1ecqd2 D:8-24,58-73,76-92,107-129 1tkk d1tkke2 E:41-49,58-70,81-94,96-116 2mnr d2mnra2 A:44-53,55-74,79-92,97-120 1jdf d1jdfd2 D:8-24,58-73,76-92,107-129 1tkk d1tkkg2 G:41-49,58-70,81-94,96-116 1mdr d1mdra2 A:44-53,55-74,79-92,97-120 1tkk d1tkkd2 D:41-49,58-70,81-94,96-116 1tkk d1tkka2 A:41-49,58-70,81-94,96-116 1jpm d1jpmd2 D:41-49,58-70,81-94,96-116 1tkk d1tkkf2 F:41-49,58-70,81-94,96-116 1f9c d1f9ca2 A:4-18,63-75,86-99,101-121 1jpm d1jpma2 A:41-49,58-70,81-94,96-116 1tkk d1tkkh2 H:41-49,58-69,81-94,96-116 1sjb d1sjbd2 D:2-15,59-71,82-94,96-116 1f9c d1f9cb2 B:4-18,63-75,86-99,101-121 1mdr d1mdra2 A:4-18,55-74,79-92,97-120 1f9c d1f9cb2 B:44-52,63-75,86-99,101-121 1f9c d1f9ca2 A:44-52,63-75,86-99,101-121 1sjc d1sjcd2 D:2-15,59-71,82-94,96-116 1bkh d1bkha2 A:44-52,63-75,86-99,101-121 1sjd d1sjdc2 C:2-15,59-71,82-94,96-116 1sjb d1sjbc2 C:2-15,59-71,82-94,96-116 1tkk d1tkke2 E:1-15,58-70,81-94,96-116 1yey d1yeyc2 C:3-17,59-75,96-104,106-129 1jpm d1jpma2 A:1-15,58-70,81-94,96-116 1jpm d1jpmb2 B:41-49,58-70,81-94,96-116 1yey d1yeyb2 B:3-17,59-75,96-104,106-129 1sjd d1sjdd2 D:2-15,59-71,82-94,96-116 1r0m d1r0ma2 A:7-22,66-78,89-101,103-123 1bkh d1bkhb2 B:44-52,63-75,86-99,101-121 1r0m d1r0mb2 B:7-22,66-78,89-101,103-123 1jpm d1jpmd2 D:1-15,58-70,81-94,96-116 1tkk d1tkkd2 D:1-15,58-70,81-94,96-116 1tkk d1tkkh2 H:1-15,58-69,81-94,96-116 1muc d1muca2 A:44-52,63-75,86-99,101-121 2muc d2mucb2 B:44-52,63-75,86-99,101-121 1muc d1mucb2 B:44-52,63-75,86-99,101-121 2muc d2muca2 A:44-52,63-75,86-99,101-121 3muc d3muca2 A:44-52,63-75,86-99,101-121 1yey d1yeya2 A:2-17,59-75,85-96,106-129 1bkh d1bkhc2 C:44-52,63-75,86-99,101-121 3muc d3mucb2 B:44-52,63-75,86-99,101-121 1tkk d1tkkb2 B:1-15,58-70,81-94,96-116 1muc d1muca2 A:4-18,63-75,86-99,101-121 1tkk d1tkkg2 G:1-15,58-70,81-94,96-116 1muc d1mucb2 B:4-18,63-75,86-99,101-121 1bkh d1bkhc2 C:4-18,63-75,86-99,101-121 2muc d2mucb2 B:4-18,63-75,86-99,101-121 2muc d2muca2 A:4-18,63-75,86-99,101-121 1yey d1yeyd2 D:2-17,59-75,85-96,106-129 3muc d3muca2 A:4-18,63-75,86-99,101-121 3muc d3mucb2 B:4-18,63-75,86-99,101-121 2chr d2chra2 A:3-15,59-71,82-95,97-117 1sjb d1sjbb2 B:3-15,59-71,82-94,96-116 1tkk d1tkkc2 C:2-15,58-70,81-94,96-116 1tkk d1tkkf2 F:1-15,58-70,81-94,96-116 1tkk d1tkka2 A:1-15,58-70,81-94,96-116 1jpm d1jpmb2 B:1-15,58-70,81-94,96-116 1sjd d1sjda2 A:3-15,59-71,82-94,96-116 1sjd d1sjdb2 B:3-15,59-71,82-94,96-116 1sjc d1sjcb2 B:3-15,59-71,82-94,96-116 1sjb d1sjba2 A:3-15,59-71,82-94,96-116 1sja d1sjaa2 A:3-15,59-71,82-94,96-116 1jpd d1jpdx2 X:38-46,54-66,74-83,85-104 1sja d1sjac2 C:3-15,59-71,82-94,96-116 1wuf d1wufa2 A:1041-1049,1060-1072,1083-1095,1097-1117 1wuf d1wufb2 B:2041-2049,2060-2072,2083-2095,2097-2117 1sjc d1sjcc2 C:3-15,59-71,82-94,96-116 1sjc d1sjca2 A:3-15,59-71,82-94,96-116 1sja d1sjab2 B:3-15,59-71,82-94,96-116 1sja d1sjad2 D:3-15,59-71,82-94,96-116 1yey d1yeyc2 C:3-17,59-75,85-96,106-129 1wue d1wueb2 B:2041-2049,2060-2072,2083-2095,2097-2117 1nu5 d1nu5a2 A:3-15,59-71,82-95,97-117 1yey d1yeyb2 B:3-17,59-75,85-96,106-129 1bkh d1bkhb2 B:4-19,63-75,86-99,101-121 1wue d1wuea2 A:1041-1049,1060-1072,1083-1095,1097-1117 1jpd d1jpdx2 X:2-13,54-66,74-83,85-104 1wue d1wueb2 B:2002-2015,2060-2072,2083-2095,2097-2117 1sjc d1sjcd2 D:40-47,59-71,82-94,96-116 1sjd d1sjdd2 D:40-47,59-71,82-94,96-116 1rvk d1rvka2 A:1-16,58-66,77-93,97-117 1sjc d1sjcc2 C:40-47,59-71,82-94,96-116 1wuf d1wufa2 A:1002-1015,1060-1072,1083-1095,1097-1117 1wuf d1wufb2 B:2002-2015,2060-2072,2083-2095,2097-2117 1wue d1wuea2 A:1002-1016,1060-1072,1083-1095,1097-1117 10. d.87.2 CO dehydrogenase flavoprotein C-terminal domain-like CO dehydrogenase flavoprotein C-domain-like core: beta(3,4)-alpha(3); alpha+beta sandwich 1vdv d1vdvb4 B:447-458,466-474,479-495,504-528 1v97 d1v97b4 B:447-458,466-474,479-495,504-528 3b9j d3b9jj1 J:447-458,466-474,479-495,504-528 1fiq d1fiqb1 B:447-458,466-474,479-495,504-528 1fo4 d1fo4b4 B:447-458,466-474,479-495,504-528 3b9j d3b9jb1 B:447-458,466-474,479-495,504-528 1fo4 d1fo4a4 A:447-458,466-474,479-495,504-529 1vdv d1vdva4 A:447-458,466-474,479-495,504-529 1v97 d1v97a4 A:447-458,466-474,479-495,504-529 1n5x d1n5xb4 B:447-458,466-474,479-495,504-529 1n5x d1n5xa4 A:447-458,466-474,479-495,504-529 1t3q d1t3qf1 F:204-215,223-233,236-249,260-285 1n5w d1n5wc1 C:207-218,226-236,239-254,263-287 1t3q d1t3qc1 C:204-215,223-231,236-249,260-285 1n63 d1n63c1 C:207-218,226-236,239-254,263-287 1jro d1jroc3 C:375-386,394-402,414-423,431-452 1jro d1jroa3 A:375-386,394-402,414-423,431-452 1jrp d1jrpe3 E:375-386,394-402,414-423,431-452 1jrp d1jrpg3 G:375-386,394-402,414-423,431-452 1jro d1jroe3 E:375-386,394-402,414-423,431-452 1jrp d1jrpa3 A:375-386,394-402,414-423,431-452 1jro d1jrog3 G:375-386,394-402,414-423,431-452 1jrp d1jrpc3 C:375-386,394-402,414-423,431-452 1zxi d1zxif1 F:207-218,226-236,239-254,263-286 1ffu d1ffuf1 F:207-218,226-234,239-254,263-286 1n61 d1n61f1 F:207-218,226-236,239-254,263-286 1n5w d1n5wf1 F:207-218,226-236,239-254,263-286 1zxi d1zxic1 C:207-218,226-236,239-254,263-286 1n63 d1n63f1 F:207-218,226-236,239-254,263-286 1ffv d1ffvf1 F:207-218,226-234,239-254,263-286 1n62 d1n62c1 C:207-218,226-236,239-254,263-286 1ffu d1ffuc1 C:207-218,226-234,239-254,263-286 1n60 d1n60f1 F:207-218,226-236,239-254,263-286 1n62 d1n62f1 F:207-218,226-236,239-254,263-286 1ffv d1ffvc1 C:207-218,226-234,239-254,263-286 1n61 d1n61c1 C:207-218,226-236,239-254,263-286 1n60 d1n60c1 C:207-218,226-236,239-254,263-286 17. d.224.1 SufE/NifU iron-sulfur cluster assembly proteins ! SufE/NifU alpha(2)-beta(3)-alpha(3); 2 layers alpha/beta, 3-stranded antiparallel beta-sheet; order 123 1vqz d1vqza1 A:268-278,284-295,298-310,319-329 1xjs d1xjsa_ A:31-40,66-83,110-122,122-141 1mzg d1mzga_ A:66-74,75-90,101-110,116-139 1su0 d1su0b_ B:53-64,65-80,83-100,121-141 1mzg d1mzgb_ B:65-74,75-90,101-110,116-141 1r9p d1r9pa_ A:52-62,63-78,89-98,100-126 1xjs d1xjsa_ A:54-65,66-83,110-122,122-141 1q48 d1q48a_ A:52-61,63-80,89-98,103-126 1q48 d1q48a_ A:52-61,63-80,81-88,103-126 1wfz d1wfza_ A:47-58,59-77,85-94,96-124 1r9p d1r9pa_ A:52-62,63-78,81-89,100-126 1xjs d1xjsa_ A:54-65,66-83,84-102,122-141 1su0 d1su0b_ B:53-64,65-80,109-116,121-141 1wfz d1wfza_ A:22-32,59-77,85-94,96-124 18. d.55.1 Ribosomal protein L22 some topological similarity to prokaryotic ribosomal protein L17 ! Ribosomal protein L22 beta-alpha(3)-beta(2); 2 layers: alpha/beta; related to the enolase/MLE N-domain fold by a circular permutation 3ccj d3ccjr1 R:12-23,24-36,39-53,81-103 1ffk d1ffko_ O:12-23,24-36,39-53,81-103 3cc4 d3cc4r1 R:12-23,24-36,39-53,81-103 1vqn d1vqnr1 R:12-23,24-36,39-53,81-103 1vqo d1vqor1 R:12-23,24-36,39-53,81-103 1vqp d1vqpr1 R:12-23,24-36,39-53,81-103 3cc7 d3cc7r1 R:12-23,24-36,39-53,81-103 3cc2 d3cc2r1 R:12-23,24-36,39-53,81-103 2qex d2qexr1 R:12-23,24-36,39-53,81-103 3ccs d3ccsr1 R:12-23,24-36,39-53,81-103 1vq8 d1vq8r1 R:12-23,24-36,39-53,81-103 1qvg d1qvgq_ Q:12-23,24-36,39-53,81-103 1jj2 d1jj2q_ Q:12-23,24-36,39-53,81-103 1q81 d1q81s_ S:12-23,24-36,39-53,81-103 3ccl d3cclr1 R:12-23,24-36,39-53,81-103 1q82 d1q82s_ S:12-23,24-36,39-53,81-103 1vq9 d1vq9r1 R:12-23,24-36,39-53,81-103 1n8r d1n8rs_ S:12-23,24-36,39-53,81-103 3ccu d3ccur1 R:12-23,24-36,39-53,81-103 1vql d1vqlr1 R:12-23,24-36,39-53,81-103 1nji d1njis_ S:12-23,24-36,39-53,81-103 3ccm d3ccmr1 R:12-23,24-36,39-53,81-103 1yhq d1yhqr1 R:12-23,24-36,39-53,81-103 1kqs d1kqsq_ Q:12-23,24-36,39-53,81-103 1s72 d1s72r_ R:12-23,24-36,39-53,81-103 1q7y d1q7ys_ S:12-23,24-36,39-53,81-103 1kc8 d1kc8s_ S:12-23,24-36,39-53,81-103 3cpw d3cpwq1 Q:12-23,24-36,39-53,81-103 1m1k d1m1ks_ S:12-23,24-36,39-53,81-103 1m90 d1m90s_ S:12-23,24-36,39-53,81-103 1yij d1yijr1 R:12-23,24-36,39-53,81-103 1k73 d1k73s_ S:12-23,24-36,39-53,81-103 1vqk d1vqkr1 R:12-23,24-36,39-53,81-103 3ccv d3ccvr1 R:12-23,24-36,39-53,81-103 3cd6 d3cd6r1 R:12-23,24-36,39-53,81-103 1vqm d1vqmr1 R:12-23,24-36,39-53,81-103 1qvf d1qvfq_ Q:12-23,24-36,39-53,81-103 3ccq d3ccqr1 R:12-23,24-36,39-53,81-103 2otl d2otlr1 R:12-23,24-36,39-53,81-103 1yi2 d1yi2r1 R:12-23,24-36,39-53,81-103 2qa4 d2qa4r1 R:12-23,24-36,39-53,81-103 2otj d2otjr1 R:12-23,24-36,39-53,81-103 3cce d3ccer1 R:12-23,24-36,39-53,81-103 1vq4 d1vq4r1 R:12-23,24-36,39-53,81-103 1yit d1yitr1 R:12-23,24-36,39-53,81-103 3cma d3cmar1 R:12-23,24-36,39-53,81-103 1vq7 d1vq7r1 R:12-23,24-36,39-53,81-103 1vq5 d1vq5r1 R:12-23,24-36,39-53,81-103 1k8a d1k8as_ S:12-23,24-36,39-53,81-103 1k9m d1k9ms_ S:12-23,24-36,39-53,81-103 3cme d3cmer1 R:12-23,24-36,39-53,81-103 1q86 d1q86s_ S:12-23,24-36,39-53,81-103 3ccr d3ccrr1 R:12-23,24-36,39-53,81-103 1vq6 d1vq6r1 R:12-23,24-36,39-53,81-103 1kd1 d1kd1s_ S:12-23,24-36,39-53,81-103 1yjn d1yjnr1 R:12-23,24-36,39-53,81-103 1yjw d1yjwr1 R:12-23,24-36,39-53,81-103 1yj9 d1yj9r1 R:12-23,24-36,39-53,81-103 2i2t d2i2ts1 S:1-13,13-25,28-40,41-63 2i2v d2i2vs1 S:1-13,13-25,28-40,41-63 2qbe d2qbes1 S:1-13,13-25,28-40,41-63 2qbg d2qbgs1 S:1-13,13-25,28-40,41-63 1i4j d1i4jb_ B:2-13,13-25,28-40,41-63 2qox d2qoxs1 S:3-13,13-25,28-40,41-63 2qov d2qovs1 S:2-13,13-25,28-40,41-63 1vs6 d1vs6s1 S:3-11,13-25,31-40,41-63 2hgu d2hguv1 V:2-12,13-25,28-40,41-63 2vhm d2vhms1 S:3-12,13-25,28-40,41-63 2qba d2qbas1 S:1-11,13-25,28-40,41-63 2qbc d2qbcs1 S:1-11,13-25,28-40,41-63 2qam d2qams1 S:1-11,13-25,28-40,41-62 2qao d2qaos1 S:1-11,13-25,28-40,41-62 2z4l d2z4ls1 S:1-11,13-25,28-40,41-62 2z4n d2z4ns1 S:1-11,13-25,28-40,41-62 2hgj d2hgjv1 V:2-12,13-25,28-40,41-63 2qbk d2qbks1 S:1-11,13-25,28-40,41-63 2qbi d2qbis1 S:1-11,13-25,28-40,41-63 2vhn d2vhns1 S:3-12,13-25,28-40,41-63 3df2 d3df2s1 S:1-11,13-25,28-40,41-63 3df4 d3df4s1 S:1-11,13-25,28-40,41-63 21. e.67.1 PH0156-like PH0156-like 2 (sub)domains; d1: [alpha/beta with central mixed beta-sheet, order: 23415876, similarity to the G protein but no P-loop]; d2: [all-alpha, 5 helices, provides dimerization interface] 2p62 d2p62a1 A:1-10,10-26,219-231,231-241 2p62 d2p62b1 B:1-10,10-26,219-231,231-241 23. e.51.1 Urocanase Urocanase 3 domains; d1: alpha+beta [alpha(2)-beta(3); mixed sheet: 213]; d2: alpha/beta of the NAD(P)-binding Rossmann-fold superfamily (scop_sf 51735, most similar to scop_fa 51883 and scop_fa 51736); d3: alpha+beta of the glutamine synthetase/guanido kinase fold (scop_cf 55930); d1 and d3 form a single beta-sheet 1w1u d1w1ua_ A:357-367,369-385,414-432,511-537 1uwk d1uwkb_ B:357-367,369-385,414-432,511-537 1w1u d1w1ub_ B:357-367,369-385,414-432,511-537 1uwk d1uwka_ A:357-367,369-385,414-432,511-537 1uwl d1uwla_ A:357-367,369-385,414-432,511-537 1uwl d1uwlb_ B:357-367,369-385,414-432,511-537 1x87 d1x87b_ B:353-362,364-380,409-427,506-532 1x87 d1x87a_ A:354-362,364-380,409-427,506-532 28. a.267.1 Topoisomerase V catalytic domain-like Topoisomerase V catalytic domain-like multihelical; irregular array; contains small amount of beta-structure and a 3-helical bundle with a variant homeofomain-like fold and HTH motif (scop_cf 46688) 2csb d2csba5 A:76-83,86-95,99-108,109-119 30. c.150.1 EreA/ChaN-like there are four conserved residues in the putative active site: two His and two Glu EreA/ChaN-like Core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order:51423; 2g5g d2g5gx1 X:74-80,86-97,101-110,116-131 2ebf d2ebfx2 X:937-943,945-959,963-975,980-993 2ebh d2ebhx2 X:937-943,945-959,963-975,980-993 2ec5 d2ec5a2 A:937-943,945-959,963-975,980-993 2ec5 d2ec5b2 B:937-943,945-959,963-975,980-993 32. e.40.1 Cullin homology domain Cullin homology domain 3 domains: (1) 4-helical bundle; (2) alpha+beta; (3) "winged helix"-like 1ldk d1ldkb2 B:598-604,604-618,621-630,632-647 1ldj d1ldja3 A:598-604,604-618,621-630,632-647 1u6g d1u6ga3 A:597-603,603-617,620-629,631-646 2hye d2hyec3 C:584-592,592-606,609-618,620-636 36. c.85.1 FucI/AraA N-terminal and middle domains FucI/AraA N-terminal and middle domains consists of two domains of similar topology, 3 layers (a/b/a) each ! Domain 1 (1-173) has parallel beta-sheet of 5 strands, order 21345 ! Domain 2 (174-355) has parallel beta-sheet of 4 strands, order 2134 1fui d1fuie2 E:135-139,152-175,339-354,536-548 1fui d1fuia2 A:135-139,152-175,339-354,536-548 1fui d1fuic2 C:135-139,152-175,339-354,536-548 1fui d1fuib2 B:135-139,152-175,339-354,536-548 1fui d1fuid2 D:135-139,152-175,339-354,536-548 1fui d1fuif2 F:135-139,152-175,339-354,536-548 2hxg d2hxga2 A:144-149,153-176,308-323,458-470 2ajt d2ajtb2 B:144-150,153-176,308-323,458-470 2hxg d2hxgb2 B:144-150,153-176,308-323,458-470 2ajt d2ajtc2 C:144-150,153-176,308-323,458-470 2hxg d2hxgc2 C:144-150,153-176,308-323,458-470 2ajt d2ajta2 A:144-150,153-176,308-323,458-470 2hxg d2hxgb2 B:99-106,153-176,308-323,458-470 2ajt d2ajtb2 B:99-106,153-176,308-323,458-470 2hxg d2hxga2 A:99-105,153-176,308-323,458-470 2hxg d2hxgc2 C:99-106,153-176,308-323,458-470 2ajt d2ajtc2 C:99-106,153-176,308-323,458-470 2ajt d2ajta2 A:99-106,153-176,308-323,458-470 39. d.75.1 tRNA-intron endonuclease N-terminal domain-like MutS N-terminal domain-like beta(2)-alpha-beta(2)-alpha-beta(2); 2 layers, alpha/beta 1r11 d1r11b3 B:6-11,12-19,31-42,48-61 1r11 d1r11a3 A:6-11,12-19,31-42,48-61 2gjw d2gjwd3 D:9-14,15-22,34-45,51-64 2gjw d2gjwa3 A:9-14,15-22,34-45,51-64 1rlv d1rlvb3 B:6-11,12-19,31-42,48-61 1rlv d1rlva3 A:6-11,12-19,31-42,48-61 1a79 d1a79c2 C:17-22,23-34,46-57,70-83 1a79 d1a79a2 A:17-22,23-34,46-57,70-83 2gjw d2gjwb3 B:8-13,14-21,33-44,50-63 2gjw d2gjwc3 C:8-13,14-21,33-44,50-63 1a79 d1a79d2 D:17-22,23-34,46-57,70-83 1a79 d1a79b2 B:17-22,23-34,46-57,70-83 1r0v d1r0vc3 C:156-161,162-170,182-193,201-214 1r0v d1r0va3 A:156-161,162-170,182-193,201-214 1r0v d1r0vb3 B:156-161,162-170,182-193,201-214 1r0v d1r0vd3 D:156-161,162-170,182-193,201-214 1rlv d1rlvb4 B:156-161,162-170,182-193,201-214 1rlv d1rlva4 A:156-161,162-170,182-193,201-214 2gjw d2gjwb4 B:158-163,164-172,184-195,203-216 2gjw d2gjwc4 C:158-163,164-172,184-195,203-216 1r11 d1r11b4 B:156-161,162-170,182-193,201-214 2gjw d2gjwd4 D:159-164,165-173,185-196,204-217 1r11 d1r11a4 A:156-161,162-170,182-193,201-214 2gjw d2gjwa4 A:159-164,165-173,185-196,204-217 47. d.335.1 L,D-transpeptidase pre-catalytic domain-like L,D-transpeptidase pre-catalytic domain-like unusual fold, made of four helices and four 2-3 stranded beta-sheets 1zat d1zata2 A:229-236,243-252,261-277,305-320 49. d.129.4 Cell-division protein ZipA, C-terminal domain contains a single copy of this fold ! TBP-like beta-alpha-beta(4)-alpha 1y2g d1y2ga1 A:8-17,24-36,93-113,125-142 1s1j d1s1ja_ A:8-17,24-36,93-113,125-142 1f46 d1f46b_ B:8-17,24-36,93-113,125-144 1s1s d1s1sb1 B:8-17,24-36,93-113,125-143 1f46 d1f46a_ A:8-17,24-36,93-113,125-144 1f47 d1f47b_ B:8-17,24-36,93-113,125-144 1y2f d1y2fa1 A:9-17,24-36,93-113,125-144 1s1s d1s1sa1 A:9-17,24-36,93-113,125-144 1s1j d1s1jb_ B:9-17,24-36,93-113,125-144 1y2g d1y2gb1 B:9-17,24-36,93-113,125-144 53. c.56.6 LigB-like circular permutation of the common fold, most similar to the PNP fold ! Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops 1bou d1boud_ D:2-11,206-221,228-237,237-254 1bou d1boub_ B:2-11,206-221,228-237,239-254 1b4u d1b4ud_ D:2-11,206-221,228-237,239-254 1b4u d1b4ub_ B:2-11,206-221,228-237,239-254 62. c.64.1 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 231456; strand 3 is antiparallel to the rest 2c3m d2c3ma4 A:538-545,558-572,575-592,595-614 2c42 d2c42b4 B:538-545,558-572,575-592,595-614 2c3m d2c3mb4 B:538-545,558-572,575-592,595-614 1b0p d1b0pa4 A:538-545,558-572,575-591,595-614 2uza d2uzaa4 A:538-545,558-572,575-592,595-614 2c3u d2c3ub4 B:538-545,558-572,575-592,595-614 2c3p d2c3pa4 A:538-545,558-572,575-592,595-614 2c3u d2c3ua4 A:538-545,558-572,575-592,595-614 2c42 d2c42a4 A:538-545,558-572,575-592,595-614 2c3y d2c3ya4 A:538-545,558-572,575-592,595-614 2c3p d2c3pb4 B:538-545,558-572,575-595,595-614 2uza d2uzab4 B:538-545,558-572,575-595,595-614 1kek d1kekb4 B:538-545,558-572,575-592,595-614 2c3y d2c3yb4 B:538-545,558-572,575-593,595-614 1kek d1keka4 A:538-545,558-572,575-593,595-614 2pda d2pdaa4 A:538-545,558-572,575-592,595-614 2pda d2pdab4 B:538-545,558-572,575-592,595-614 2c3o d2c3oa4 A:538-545,558-572,575-592,595-614 1b0p d1b0pb4 B:538-545,558-572,575-591,595-613 2c3o d2c3ob4 B:538-545,558-572,575-592,595-613 74. a.264.1 Duffy binding domain-like Duffy binding domain-like consist of two subdomains, each containing a three-helical bundle 1zro d1zrob1 B:32-38,84-104,174-194,212-245 1zro d1zroa1 A:32-38,84-104,174-194,212-245 1zrl d1zrla2 A:342-346,391-412,480-508,515-550 1zro d1zrob2 B:342-346,391-412,480-508,515-550 1zro d1zroa2 A:342-346,391-412,480-508,515-550 1zrl d1zrla1 A:32-39,84-104,174-203,212-245 75. f.13.1 Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane 2f95 d2f95a1 A:65-69,94-119,120-143,153-182 2f93 d2f93a1 A:65-69,94-119,120-143,153-182 1h2s d1h2sa_ A:65-69,94-119,120-143,153-182 1h68 d1h68a1 A:65-69,94-119,120-143,153-182 1gu8 d1gu8a_ A:65-69,94-119,120-143,153-182 1gue d1guea_ A:65-69,94-119,120-143,153-182 1jgj d1jgja_ A:65-69,94-119,120-152,153-182 1c8s d1c8sa_ A:73-80,104-128,130-153,176-193 1s54 d1s54a_ A:74-80,104-128,130-164,164-193 1s54 d1s54b_ B:74-80,104-128,130-164,164-193 1q5j d1q5jb_ B:74-80,104-128,130-164,164-193 1q5j d1q5ja_ A:74-80,104-128,130-164,164-193 1kg8 d1kg8a_ A:73-80,104-128,130-155,167-193 1q5i d1q5ib_ B:74-80,104-128,130-164,164-193 1q5i d1q5ia_ A:74-80,104-128,130-164,164-193 1kme d1kmea_ A:74-80,104-128,130-164,164-193 1kme d1kmeb_ B:74-80,104-128,130-164,164-193 1c3w d1c3wa_ A:73-80,104-128,130-156,164-193 1f4z d1f4za_ A:73-80,104-128,130-156,164-193 1c8r d1c8ra_ A:73-80,104-128,130-156,164-193 1tn5 d1tn5b_ B:74-80,104-128,130-164,164-193 1tn5 d1tn5a_ A:74-80,104-128,130-164,164-193 1o0a d1o0aa_ A:73-80,104-128,130-156,164-193 1kg9 d1kg9a_ A:73-80,104-128,130-156,164-193 1m0m d1m0ma_ A:73-80,104-128,130-156,164-193 2ntu d2ntua1 A:73-80,104-128,130-156,164-193 1m0l d1m0la_ A:73-80,104-128,130-156,164-193 1kgb d1kgba_ A:73-80,104-128,130-156,164-193 2ntw d2ntwa1 A:73-80,104-128,130-156,164-193 1m0k d1m0ka_ A:73-80,104-128,130-156,164-193 1p8i d1p8ia_ A:73-80,104-128,130-156,164-193 1e12 d1e12a_ A:98-106,130-154,157-191,192-218 1at9 d1at9a_ A:73-80,104-129,130-161,164-193 1uaz d1uaza_ A:79-86,110-134,136-170,170-199 1py6 d1py6b_ B:73-80,104-128,130-164,164-193 1py6 d1py6a_ A:73-80,104-128,130-164,164-193 1s53 d1s53b_ B:73-80,104-128,130-164,164-193 1s53 d1s53a_ A:73-80,104-128,130-164,164-193 1pxs d1pxsb_ B:73-80,104-128,130-164,164-193 1pxs d1pxsa_ A:73-80,104-128,130-164,164-193 1s51 d1s51b_ B:73-80,104-128,130-164,164-193 1s51 d1s51a_ A:73-80,104-128,130-164,164-193 1s52 d1s52b_ B:73-80,104-128,130-164,164-193 1s52 d1s52a_ A:73-80,104-128,130-164,164-193 1tn0 d1tn0a_ A:73-80,104-128,130-164,164-193 1tn0 d1tn0b_ B:73-80,104-128,130-164,164-193 1uaz d1uazb_ B:79-86,110-134,136-170,170-199 1brr d1brrb_ B:73-80,104-128,130-164,164-193 1iw6 d1iw6a_ A:73-80,104-128,130-164,164-193 1qko d1qkoa_ A:73-80,104-128,130-164,164-193 1qkp d1qkpa_ A:73-80,104-128,130-164,164-193 1e0p d1e0pa_ A:73-80,104-128,130-164,164-193 1qm8 d1qm8a_ A:73-80,104-128,130-164,164-193 1fbk d1fbka_ A:73-80,104-128,130-164,164-193 1vjm d1vjma_ A:73-80,104-128,130-164,164-193 1qhj d1qhja_ A:73-80,104-128,130-164,164-193 1x0s d1x0sa1 A:73-80,104-128,130-164,164-193 1dze d1dzea_ A:73-80,104-128,130-164,164-193 1bm1 d1bm1a_ A:73-80,104-128,131-164,164-193