1. d.131.1 DNA clamp
DNA clamp contains two helices and two beta sheets ! duplication: fold has internal pseudo two-fold symmetry
1b77 d1b77a1 A:4-19,19-25,27-33,37-44
1b77 d1b77c1 C:4-19,19-25,27-33,37-44
1b8h d1b8hb1 B:4-19,19-27,28-33,37-43
1b77 d1b77b1 B:4-19,19-27,28-33,37-43
1b8h d1b8hc1 C:4-19,19-26,28-33,37-43
1czd d1czdb1 B:2004-2019,2019-2027,2028-2033,2037-2043
1czd d1czdc1 C:3004-3019,3019-3027,3028-3033,3037-3043
1czd d1czda1 A:1004-1019,1019-1026,1028-1033,1037-1043
1b8h d1b8ha1 A:4-19,19-24,28-33,37-43
2. c.23.16 Class I glutamine amidotransferase-like conserved positions of the oxyanion hole and catalytic nucleophile; different constituent families contain different additional structures !
Flavodoxin-like 3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
1qvv d1qvvd_ D:138-147,159-163,208-213,214-219
3bwe d3bwee1 E:907-916,919-924,945-950,951-956
1qvz d1qvza_ A:138-147,159-163,208-213,214-219
1qvz d1qvzb_ B:138-147,159-163,208-213,214-219
1qvw d1qvwb_ B:138-147,159-163,208-213,214-219
1qvv d1qvva_ A:139-147,159-163,208-213,214-219
1qvw d1qvwa_ A:138-147,159-163,208-213,214-219
1pe0 d1pe0b_ B:307-316,319-324,345-350,351-356
1qvv d1qvvc_ C:139-147,159-163,208-213,214-219
1pe0 d1pe0a_ A:107-116,119-124,145-150,151-156
3bwe d3bwed1 D:707-716,719-724,745-750,751-756
2or3 d2or3a1 A:107-116,119-124,145-150,151-156
1pdw d1pdwf_ F:2307-2316,2319-2324,2345-2350,2351-2356
1pdv d1pdva_ A:107-116,119-124,145-150,151-156
2r1u d2r1ua1 A:107-116,119-124,145-150,151-156
1q2u d1q2ua_ A:107-116,119-124,145-150,151-156
2r1u d2r1ub1 B:107-116,119-124,145-150,151-156
1ucf d1ucfb_ B:107-116,119-124,145-150,151-156
1pdw d1pdwe_ E:2107-2116,2119-2124,2145-2150,2151-2156
3bwe d3bweg1 G:1307-1316,1319-1324,1345-1350,1351-1356
2or3 d2or3b1 B:107-116,119-124,145-150,151-156
1ucf d1ucfa_ A:107-116,119-124,145-150,151-156
1pdw d1pdwd_ D:1307-1316,1319-1324,1345-1350,1351-1356
1pdw d1pdwb_ B:307-316,319-324,345-350,351-356
1soa d1soaa_ A:107-116,119-124,145-150,151-156
1p5f d1p5fa_ A:107-116,119-124,145-150,151-156
1pdw d1pdwg_ G:3107-3116,3119-3124,3145-3150,3151-3156
1pdw d1pdwc_ C:1107-1116,1119-1124,1145-1150,1151-1156
1pdw d1pdwh_ H:3307-3316,3319-3324,3345-3350,3351-3356
1pdw d1pdwa_ A:107-116,119-124,145-150,151-156
3bwe d3bwec1 C:507-516,519-524,545-550,551-556
3bwe d3bwea1 A:107-116,119-124,145-150,151-156
1u9c d1u9ca_ A:127-135,146-150,190-195,196-201
1j42 d1j42a_ A:107-116,119-124,145-150,151-156
1pv2 d1pv2c_ C:186-195,203-207,249-255,256-262
3bwe d3bweb1 B:307-316,319-324,345-350,351-356
3bwe d3bwef1 F:1107-1116,1119-1124,1145-1150,1151-1156
1oy1 d1oy1c_ C:139-149,151-155,181-186,187-193
1oy1 d1oy1a_ A:139-149,151-155,181-186,187-193
1oy1 d1oy1d_ D:139-149,151-155,181-186,187-193
1oy1 d1oy1b_ B:139-149,151-155,181-186,187-193
1pv2 d1pv2d_ D:186-195,203-207,249-255,256-262
1oi4 d1oi4a1 A:126-135,139-143,163-168,170-175
1vhq d1vhqb_ B:139-149,151-155,181-186,187-193
1oi4 d1oi4b1 B:326-335,339-343,363-368,370-375
1vhq d1vhqa_ A:139-149,151-155,181-186,187-193
1izz d1izza_ A:185-197,202-207,250-255,256-261
1ons d1onsa_ A:185-194,202-206,248-254,255-261
1g2i d1g2ic_ C:501-510,514-518,538-543,544-549
2abw d2abwb1 B:87-94,115-121,183-188,189-194
1g2i d1g2ia_ A:101-110,114-118,138-143,144-149
1g2i d1g2ib_ B:301-310,314-318,338-343,344-349
2abw d2abwa1 A:87-94,115-121,183-188,189-194
1r9g d1r9gb_ B:80-87,101-107,157-162,163-168
2nv0 d2nv0a1 A:79-87,101-107,157-162,163-168
1r9g d1r9ga_ A:80-87,101-107,157-162,163-168
1q7r d1q7ra_ A:78-85,100-106,156-161,162-167
2nv0 d2nv0b1 B:80-87,101-107,157-162,163-168
1gpm d1gpmd2 D:87-97,97-102,162-172,173-179
1gpm d1gpmb2 B:87-97,97-102,162-172,173-179
1gpm d1gpmc2 C:87-97,97-102,162-172,173-179
1wl8 d1wl8a1 A:80-90,90-96,147-156,159-164
2a9v d2a9vd1 D:81-91,92-96,148-157,160-165
2a9v d2a9va1 A:81-91,92-96,148-157,160-165
2a9v d2a9vc1 C:81-91,92-96,148-157,160-165
1gpm d1gpma2 A:87-97,97-102,166-172,173-179
1gpw d1gpwd_ D:84-91,90-95,165-170,171-176
1kxj d1kxja_ A:84-91,90-95,165-170,171-176
1pv2 d1pv2a_ A:186-198,203-207,250-255,256-261
1t3t d1t3ta2 A:1136-1145,1155-1159,1245-1249,1253-1258
1pv2 d1pv2b_ B:186-198,203-207,249-255,256-262
1n57 d1n57a_ A:186-198,203-207,249-255,256-262
1izy d1izyb_ B:186-197,202-207,250-255,256-261
1izy d1izya_ A:186-197,202-207,250-255,256-261
1pv2 d1pv2e_ E:186-198,203-207,249-255,256-262
1pv2 d1pv2h_ H:186-198,203-207,249-255,256-262
1pv2 d1pv2f_ F:186-198,203-207,249-255,256-262
1pv2 d1pv2g_ G:186-198,203-207,249-255,256-262
3. c.52.1 Restriction endonuclease-like
Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
1wdj d1wdja_ A:42-64,112-118,168-174,177-183
1wdj d1wdjc_ C:43-64,112-118,168-173,178-183
1wdj d1wdjb_ B:42-64,111-118,168-173,178-183
1wdj d1wdjb_ B:42-64,140-147,168-173,178-183
1wdj d1wdja_ A:42-64,140-148,168-174,177-183
1wdj d1wdjc_ C:43-64,140-148,168-173,178-183
4. d.194.1 CNF1/YfiH-like putative cysteine hydrolases
CNF1/YfiH-like putative cysteine hydrolases 4 layers: alpha/beta/beta/alpha; mixed beta sheets
1xfj d1xfja_ A:11-18,19-26,114-123,159-164
5. d.126.1 Pentein
Pentein, beta/alpha-propeller duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis
1wd8 d1wd8a3 A:320-331,332-337,589-593,594-599
2dw5 d2dw5a3 A:316-331,332-338,589-593,594-600
1wd9 d1wd9a3 A:317-331,332-338,589-593,594-600
2dew d2dewx3 X:316-331,332-337,589-593,594-600
2dey d2deyx3 X:316-331,332-337,589-593,594-600
2dex d2dexx3 X:316-331,332-337,589-593,594-600
1wda d1wdaa3 A:316-331,332-337,589-593,594-600
2q3u d2q3ub1 B:40-58,59-65,314-318,319-325
1vkp d1vkpb_ B:40-59,59-65,314-318,319-325
1vkp d1vkpa_ A:40-59,59-65,314-318,319-325
2abr d2abrc1 C:47-66,67-71,361-365,367-373
2a9g d2a9gc1 C:47-66,67-71,361-365,367-373
2a9g d2a9gd1 D:47-66,67-71,361-365,367-373
1zbr d1zbrb1 B:32-49,50-55,280-284,285-291
2a9g d2a9gb1 B:47-66,67-71,361-365,367-373
2aaf d2aafd1 D:47-66,67-71,361-365,367-373
2q3u d2q3ua1 A:40-59,59-65,314-318,319-326
2jer d2jerc1 C:42-61,61-67,306-311,312-318
1zbr d1zbra1 A:30-49,50-55,280-284,285-291
2jer d2jerf1 F:42-61,61-67,306-311,312-318
2abr d2abrd1 D:47-66,67-71,361-365,367-373
2jer d2jerd1 D:42-61,61-67,307-311,312-318
2ewo d2ewoh1 H:42-60,61-67,311-315,316-322
2jer d2jere1 E:42-61,61-67,307-311,312-318
2jer d2jerb1 B:42-61,61-67,307-311,312-318
2ewo d2ewof1 F:42-60,61-67,311-315,316-322
2ewo d2ewoe1 E:42-60,61-67,311-315,316-322
2ewo d2ewok1 K:42-60,61-67,311-315,316-322
2ewo d2ewoj1 J:42-60,61-67,311-315,316-322
2ewo d2ewoc1 C:42-60,61-67,311-315,316-322
2ewo d2ewol1 L:42-60,61-67,311-315,316-322
2ewo d2ewoa1 A:42-60,61-67,311-315,316-322
2ewo d2ewog1 G:42-60,61-67,311-315,316-322
2ewo d2ewob1 B:42-60,61-67,311-315,316-322
2ewo d2ewod1 D:42-60,61-67,311-315,316-322
2ewo d2ewoi1 I:42-60,61-67,311-315,316-322
1xkn d1xkna_ A:32-51,52-58,289-293,294-300
2jer d2jera1 A:42-61,61-67,307-311,312-318
2jdx d2jdxa_ A:116-138,139-144,362-366,368-374
2cmu d2cmua1 A:30-49,50-56,277-281,282-289
5jdw d5jdwa_ A:116-138,139-143,362-366,368-374
3jdw d3jdwa_ A:116-138,139-143,362-366,368-374
9jdw d9jdwa_ A:116-138,139-143,362-366,368-374
7jdw d7jdwa_ A:116-138,139-143,362-366,368-374
1ynh d1ynhc1 C:37-56,58-64,307-313,315-323
1ynf d1ynfb1 B:37-56,58-64,307-313,315-323
1ynf d1ynfa1 A:37-56,58-64,307-313,315-323
1ynf d1ynff1 F:37-56,58-64,307-313,315-323
1ynf d1ynfd1 D:37-56,58-64,307-313,315-323
1ynf d1ynfc1 C:37-56,58-64,307-313,315-323
1ynf d1ynfe1 E:37-56,58-64,307-313,315-323
6. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1ega d1egab1 B:20-30,32-36,46-54,55-62
1nrj d1nrjb_ B:50-61,65-70,71-77,81-89
7. b.82.1 RmlC-like cupins
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1yqc d1yqcb1 B:9-17,16-21,86-95,104-112
1xsq d1xsqb_ B:9-17,16-21,86-95,104-112
1xsq d1xsqa_ A:9-17,16-21,86-95,104-112
1yqc d1yqca1 A:9-17,16-21,86-95,104-112
2bdr d2bdrb1 B:10-18,17-22,88-97,107-114
1xsr d1xsra_ A:9-17,16-21,86-95,104-112
1xsr d1xsrb_ B:9-17,16-21,86-95,104-112
1vr3 d1vr3a1 A:27-35,35-41,100-110,112-121
2bdr d2bdra1 A:10-18,18-22,88-97,107-114
1zrr d1zrra1 A:20-32,33-38,112-118,119-126
8. b.71.1 Glycosyl hydrolase domain this domain is C-terminal to the catalytic beta/alpha barrel domain !
Glycosyl hydrolase domain folded sheet; greek-key
1t0o d1t0oa1 A:267-282,348-358,361-367,395-401
1szn d1szna1 A:267-282,348-358,361-367,395-401
1uas d1uasa1 A:226-241,297-307,310-316,344-350
1ktc d1ktca1 A:246-261,318-328,332-338,369-375
1ktb d1ktba1 A:246-261,318-328,332-338,369-375
1e43 d1e43a1 A:340-354,422-431,431-442,465-475
1lwj d1lwja1 A:290-305,412-421,423-429,430-436
1izj d1izja2 A:483-497,576-586,587-596,621-630
2d0f d2d0fa2 A:483-497,576-586,587-596,621-630
1izk d1izka2 A:483-497,576-586,587-596,621-630
1ji1 d1ji1a2 A:483-497,576-586,588-596,621-629
1ji1 d1ji1b2 B:483-497,576-586,587-596,621-630
1iv8 d1iv8a1 A:558-577,672-679,684-689,706-711
1uh4 d1uh4a2 A:483-497,576-586,588-596,621-629
1uh2 d1uh2a2 A:483-497,576-585,587-596,621-630
1uh3 d1uh3a2 A:483-497,576-585,587-596,621-630
2d0h d2d0ha2 A:483-497,576-585,588-596,621-629
2d0g d2d0ga2 A:483-497,576-585,588-596,621-629
1m7x d1m7xb2 B:542-560,648-657,659-669,708-718
1m7x d1m7xc2 C:542-560,648-657,659-669,708-718
1m7x d1m7xa2 A:542-560,648-657,659-669,708-718
9. d.181.1 Insert subdomain of RNA polymerase alpha subunit
Insert subdomain of RNA polymerase alpha subunit unusual fold; contains a left-handed beta-alpha-beta unit
2nvt d2nvtc2 C:59-70,96-105,110-116,140-148
1i3q d1i3qc2 C:59-71,96-106,110-116,140-148
1twa d1twac2 C:59-71,96-105,110-116,140-148
2nvz d2nvzc2 C:59-70,96-106,110-116,140-148
1twc d1twcc2 C:59-71,96-105,110-116,140-148
2b8k d2b8kc2 C:59-71,96-105,110-116,140-148
2ja7 d2ja7c2 C:59-71,96-105,110-116,140-148
1i6h d1i6hc2 C:59-71,96-106,110-116,140-148
2ja7 d2ja7o2 O:59-71,96-105,110-116,140-148
2ja8 d2ja8c2 C:59-71,96-105,110-115,140-148
2ja5 d2ja5c2 C:59-71,96-105,110-115,140-148
2b63 d2b63c2 C:59-71,96-105,110-115,140-148
2ja6 d2ja6c2 C:59-71,96-105,110-115,140-148
1twh d1twhc2 C:59-71,96-105,110-116,141-148
1k83 d1k83c2 C:59-71,96-106,110-116,140-144
1i50 d1i50c2 C:59-71,96-106,110-116,140-144
1twf d1twfc2 C:59-71,96-106,110-116,140-144
2nvx d2nvxc2 C:59-71,96-106,110-116,140-144
2nvq d2nvqc2 C:59-70,96-106,110-116,140-144
2e2h d2e2hc2 C:59-70,96-106,110-116,140-144
10. i.8.1 RNA polymerase
RNA polymerase
1y1w d1y1wc_ C:59-71,96-105,110-116,140-148
1wcm d1wcmc_ C:59-71,96-105,110-116,140-148
1y77 d1y77c_ C:59-71,96-105,110-116,140-148
1nik d1nikc_ C:59-71,96-106,110-116,140-148
1nt9 d1nt9c_ C:59-71,96-106,110-116,140-148
1r9s d1r9sc_ C:59-71,96-106,110-116,140-148
1r5u d1r5uc_ C:59-71,96-106,110-116,140-148
1pqv d1pqvc_ C:59-71,96-106,110-116,140-148
1y1y d1y1yc_ C:59-71,96-105,110-116,140-148
1y1v d1y1vc_ C:59-71,96-105,110-116,140-148
11. b.113.1 N-terminal domain of MutM-like DNA repair proteins
N-terminal domain of MutM-like DNA repair proteins pseudobarrel; capped on both ends by alpha-helices
1ee8 d1ee8a2 A:2-18,61-69,81-89,90-98
1ee8 d1ee8b2 B:2-18,61-69,81-89,90-98
2oq4 d2oq4a2 A:2-18,61-67,88-95,97-104
2ea0 d2ea0a2 A:2-18,61-67,88-95,97-104
1k3w d1k3wa2 A:2-18,61-67,88-95,97-104
1k3x d1k3xa2 A:2-18,61-67,88-95,97-104
2opf d2opfa2 A:2-18,61-67,88-95,97-104
1q3b d1q3ba2 A:2-18,61-67,88-95,97-104
1q3c d1q3ca2 A:2-18,61-67,88-95,97-104
12. b.1.4 beta-Galactosidase/glucuronidase domain
Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
2vzs d2vzsa3 A:663-674,675-683,744-755,757-769
2vzs d2vzsb3 B:663-674,675-683,744-755,757-769
2vmf d2vmfb3 B:666-677,678-687,755-763,767-775
2vzs d2vzsa3 A:602-631,675-683,744-755,757-769
2vzs d2vzsb3 B:602-631,675-683,744-755,757-769
13. c.3.1 FAD/NAD(P)-binding domain
FAD/NAD(P)-binding domain core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander
1l9d d1l9db1 B:201-209,213-217,325-330,335-341
1l9d d1l9da1 A:201-209,213-217,325-330,335-341
14. i.6.1 Viruses and virus-receptor complexes
Viruses and virus-receptor complexes
1qgc d1qgc4_ 4:125-132,341-350,418-426,427-435
15. d.31.1 Cdc48 domain 2-like
Cdc48 domain 2-like beta-alpha-beta(3); 2 layers: alpha/beta
1cz5 d1cz5a2 A:115-125,126-130,132-136,148-156
1cz4 d1cz4a2 A:115-125,126-130,132-136,148-156
16. b.50.1 Acid proteases
Acid proteases barrel, closed; n=6, S=10, complex topology
1qdm d1qdmc2 C:232-244,100S-104S,250-255,297-302
17. b.70.3 DPP6 N-terminal domain-like
8-bladed beta-propeller consists of eight 4-stranded beta-sheet motifs; meander ! also found in some members of the WD40-repeat superfamily
2ogz d2ogzb1 B:200-209,221-230,297-307,309-318
1rwq d1rwqa1 A:200-209,221-230,297-307,309-318
18. d.81.1 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain N-terminal domain is the classic Rossmann-fold !
FwdE/GAPDH domain-like core: alpha-beta-alpha-beta(3); mixed sheet: 2134, strand 2 is parallel to strand 1
1zh8 d1zh8a2 A:133-146,148-152,262-267,268-273
19. c.1.8 (Trans)glycosidases
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1we5 d1we5c4 C:520-535,535-540,607-611,613-618
20. b.1.18 E set domains "Early" Ig-like fold families possibly related to the immunoglobulin and/or fibronectin type III superfamilies !
Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
1qba d1qbaa1 A:194-203,822-828,867-873,878-885
1qbb d1qbba1 A:194-203,822-828,867-873,878-885
1c7s d1c7sa1 A:194-203,822-828,867-873,878-885
1c7t d1c7ta1 A:194-203,822-828,867-873,878-885
21. b.121.6 Group I dsDNA viruses
Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
1sie d1siec_ C:131-138,250-257,276-291,296-301
1sva d1sva1_ 1:121-128,231-238,257-273,275-281
1sid d1sidc_ C:131-138,250-257,276-291,296-301
1sie d1sieb_ B:131-138,250-257,276-291,296-301
1sid d1sida_ A:131-138,250-257,276-291,296-301
1sie d1siea_ A:131-138,250-257,276-291,296-301
1sie d1siee_ E:131-138,250-257,276-291,296-301
1sid d1side_ E:131-138,250-257,276-291,296-301
1sid d1sidb_ B:131-138,250-257,276-291,296-301
1sva d1sva3_ 3:121-128,231-238,257-273,275-281
1sva d1sva4_ 4:121-128,231-238,257-273,275-281
1sva d1sva2_ 2:121-128,231-238,257-273,275-281
1sie d1sied_ D:131-138,250-257,276-291,296-301
1sid d1sidd_ D:131-138,250-257,276-291,296-301
22. c.60.1 Phosphoglycerate mutase-like
Phosphoglycerate mutase-like core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 324156; strand 5 is antiparallel to the rest
3pgm d3pgma_ A:28-46,173-177,208-213,220-226
3pgm d3pgmb_ B:28-46,173-177,208-213,220-226
23. e.48.1 Major capsid protein VP5
Major capsid protein VP5 large protein without apparent domain division
1no7 d1no7a_ A:739-748,781-787,905-913,927-935
1no7 d1no7b_ B:739-748,781-787,905-913,927-935
24. b.2.8 beta-sandwich domain of Sec23/24
Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
1m2v d1m2va2 A:2-11,11-16,483-496,498-513
1m2o d1m2oa2 A:2-11,11-15,483-496,498-513
1m2o d1m2oc2 C:2-11,11-16,483-496,498-513
2qtv d2qtva2 A:2-11,11-15,483-496,498-513
1m2o d1m2oa2 A:22-30,455-463,483-496,498-513
1m2o d1m2oc2 C:22-30,455-463,483-496,498-513
25. d.67.3 Ribosome recycling factor, RRF
RRF/tRNA synthetase additional domain-like core: alpha-beta(2)-alpha-beta(2); 2 layers: alpha/beta
2v48 d2v48y1 Y:34-41,47-53,64-70,97-103
26. d.159.1 Metallo-dependent phosphatases different families of this superfamily are groupped in a single Pfam family,
Metallo-dependent phosphatases 4 layers: alpha/beta/beta/alpha; mixed beta sheets; contains duplication
2bdx d2bdxa1 A:68-80,262-269,278-287,290-298
27. e.60.1 Thermophilic metalloprotease-like
Thermophilic metalloprotease-like consists of two domains; d1: alpha/beta (3 layers, a/b/a; parralel beta-sheet, order 2134); d2: pseudo beta-barrel capped by helices
2ayi d2ayib1 B:184-206,313-320,384-393,395-403
2ayi d2ayia1 A:184-206,313-320,384-393,395-403
1zjc d1zjca1 A:185-208,316-323,389-398,400-409
28. d.104.1 Class II aaRS and biotin synthetases
Class II aaRS and biotin synthetases contains large mixed beta-sheet
1bbu d1bbua2 A:285-306,314-319,408-418,419-428
1bbw d1bbwa2 A:285-306,314-319,408-418,419-428
2p5i d2p5ia1 A:28-46,95-101,160-172,173-183
29. c.83.1 Aconitase iron-sulfur domain
Aconitase iron-sulfur domain consists of three similar domains with 3 layers (a/b/a) each; duplication ! core: parallel beta-sheet of 5 strands, order 32145
2b3y d2b3ya2 A:36-50,81-87,188-193,194-199
2b3x d2b3xa2 A:36-50,81-87,188-193,194-199
2b3y d2b3yb2 B:36-50,81-87,188-193,194-199
30. b.69.4 WD40 repeat-like also contains 8-bladed propellers !
7-bladed beta-propeller consists of seven 4-stranded beta-sheet motifs; meander
1nex d1nexb2 B:346-368,692-700,724-733,734-743
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 175 (enumeration index: query136) of S4
3cy6 A:107-116,119-124,145-150,151-156
3axh A:364-382,534-543,546-550,576-580
3o7y A:542-560,648-657,660-669,708-717
3o7y B:542-560,648-657,659-669,708-718
3o7y C:542-561,648-657,659-669,708-718
3o7y D:542-560,648-657,659-669,708-718
3evn A:130-143,145-149,257-264,267-273
2odh A:85-94,106-115,132-139,140-148
2vzo B:663-674,675-683,744-755,757-769
2vzo B:602-631,675-683,744-755,757-769
2vzo A:663-674,675-683,744-755,757-769
2vzo A:602-631,675-683,744-755,757-769
2ywb C:79-89,89-95,145-154,157-162
2ywb B:79-89,89-95,145-154,157-162
2ywb A:79-89,89-94,145-154,157-162
2ywb D:79-89,89-94,149-154,157-162
3oul A:145-157,177-184,199-206,208-215
4a0b D:118-137,403-412,440-446,447-455
4a0b B:118-137,403-412,440-446,447-454
3k7a C:59-71,96-105,110-115,140-148
3o7z B:542-560,648-657,659-669,708-718
3o7z C:542-561,648-657,659-669,708-718
3o7z A:542-560,648-657,660-669,708-717
3o7z D:542-560,648-657,659-669,708-718
2p3e B:2-9,10-15,35-40,286-302
2p3e A:2-9,10-15,35-40,286-302
2zid A:327-343,484-493,496-500,523-527
3s2h C:59-70,96-105,110-116,140-148
3s1n C:59-71,96-106,110-116,140-148
2y1x A:166-181,253-257,384-399,400-407
2y1x B:166-181,253-257,384-399,400-407
2y1x D:166-181,253-257,384-399,400-407
2y1x C:166-181,253-257,384-399,400-407
3a21 B:292-307,365-375,378-384,412-418
3a21 A:292-307,365-375,378-384,412-418
3hox C:59-71,96-105,110-115,140-148
3s17 C:59-70,96-105,110-115,140-148
3k1d A:548-567,653-662,664-675,713-723
3a5v A:250-265,321-331,334-340,375-381
3twb A:134-149,151-158,162-166,174-178
3mii B:138-147,159-163,208-213,214-219
3mii A:138-147,159-163,208-213,214-219
2nup A:3-16,16-21,475-488,490-504
3pkv A:145-157,177-184,199-206,208-215
3i54 B:-1-9,46-52,52-59,67-75
3gxt B:276-291,347-356,361-369,401-409
3uk7 C:314-323,327-331,356-360,361-366
3uk7 A:314-323,327-331,356-360,361-366
3uk7 C:121-130,134-138,162-167,168-173
3uk7 A:121-130,134-138,162-167,168-173
3uk7 B:314-323,327-331,356-360,361-366
3uk7 B:121-130,134-138,162-167,168-173
3imb B:85-94,105-115,131-139,140-148
3imb D:85-94,105-115,131-139,140-148
3imb C:85-94,105-115,131-139,140-148
3imb A:85-94,105-115,131-139,140-148
2vrn A:116-125,129-133,153-158,159-164
2vrn B:116-125,129-133,153-158,159-164
3kc6 A:611-619,644-649,662-668,669-675
3m3p A:90-100,101-105,158-163,169-174
4a3c C:59-71,96-105,110-116,140-148
2zic A:327-343,484-493,496-500,523-527
3nxg C:113-120,223-230,249-265,267-273
3nxg E:113-120,223-230,249-265,267-273
3nxg A:113-120,223-230,249-265,267-273
3nxg B:113-120,223-230,249-265,267-273
3nxg D:113-120,223-230,249-265,267-273
3gra A:133-142,146-150,172-177,178-183
3noo A:105-114,118-122,142-147,148-153
3noo B:102-111,115-119,139-144,145-150
2olo A:204-216,220-234,333-338,347-354
2v7e A:166-181,253-258,384-399,400-407
2v7e B:166-181,253-258,384-399,400-407
2ywc C:79-89,89-94,149-154,157-162
2ywc B:79-89,89-95,145-154,157-162
2ywc A:79-89,89-95,145-154,157-162
2ywc D:79-89,89-95,149-154,157-162
3m12 B:201-209,213-217,325-330,335-341
3b3f A:166-181,253-257,384-399,400-407
3b3f D:166-181,253-257,384-399,400-407
3b3f C:166-181,253-257,384-399,400-407
3b3f B:166-181,253-257,384-399,400-407
3h45 D:165-176,180-184,221-228,238-245
3ijm A:19-44,74-85,135-139,140-144
3ijm B:19-44,74-84,135-139,140-144
3eg9 A:27-35,456-464,476-488,490-505
3eg9 A:3-16,16-21,476-488,490-505
3s1m C:59-71,96-105,110-116,140-148
3hg2 A:276-291,347-356,361-369,401-409
3a5z H:100-107,109-119,129-138,172-179
3a5z D:100-107,109-119,129-138,172-179
3po2 C:59-71,96-105,110-116,140-148
2nut A:3-16,16-21,475-488,490-504
3sf8 B:107-116,119-124,145-150,151-156
3sf8 A:107-116,119-124,145-150,151-156
3how C:59-71,96-105,110-115,140-148
3b3g A:166-181,253-257,386-399,400-407
3b3g B:166-181,253-257,384-399,400-407
3dkw F:7-15,52-58,58-64,76-81
3fd8 A:130-143,145-149,279-287,289-297
3fd8 F:130-143,145-149,279-287,289-297
3fd8 C:130-143,145-149,279-287,289-297
3fd8 D:130-143,145-149,279-287,289-297
3fd8 B:130-143,145-149,279-287,289-297
3fd8 E:130-143,145-149,279-287,289-297
2vzu B:663-674,675-683,744-755,757-769
2vzu B:602-631,675-683,744-755,757-769
2vzu A:602-631,675-683,744-755,757-769
2vzu A:663-674,675-683,744-755,757-769
3h7c X:40-59,59-65,314-318,319-325
3fse B:112-121,125-129,149-154,155-160
3fse A:112-121,125-129,149-154,155-160
3ewn A:155-164,168-172,192-197,198-203
2vy8 A:611-619,644-649,662-668,669-675
3gcw A:430-438,454-467,643-651,652-659
3lrm A:272-287,353-363,366-372,452-458
3lrm B:272-287,353-363,366-372,452-458
3lrm C:272-287,353-363,366-372,452-458
3lrm D:272-287,353-363,366-372,452-458
2x05 B:663-674,675-683,744-755,757-769
2x05 B:602-631,675-683,744-755,757-769
2x05 A:663-674,675-683,744-755,757-769
2x05 A:602-631,675-683,744-755,757-769
3b38 A:107-116,119-124,145-150,151-156
3a22 B:292-307,365-375,378-384,412-418
3a22 A:292-307,365-375,378-384,412-418
3r0q A:51-66,138-142,286-297,307-312
3hzl A:204-216,220-234,333-338,347-353
3nor A:105-114,118-122,142-147,148-153
3k9d C:120-136,193-198,419-424,429-434
2zai C:701-711,726-737,809-818,947-963
2zai D:699-711,726-737,809-818,947-963
2zai B:699-711,726-737,809-818,947-963
2zai A:699-711,726-737,809-818,947-963
2rk4 A:107-116,119-124,145-150,151-156
3b3j A:158-181,253-257,384-399,400-406
2r1t A:107-116,119-124,145-150,151-156
2r1t B:107-116,119-124,145-150,151-156
3po3 C:59-70,96-105,110-116,140-148
3m4o C:59-70,96-105,110-116,140-148
3iys A:109-116,222-229,248-264,266-272
3iys B:109-116,222-229,248-261,267-272
3iys E:109-116,222-229,248-261,267-272
3iys C:109-116,222-229,248-263,267-272
3iys D:109-116,222-229,248-264,266-272
3s15 C:59-71,96-105,110-116,140-148
3apm A:320-331,332-337,589-593,594-600
2d73 A:582-594,648-658,658-668,706-715
2d73 B:582-594,648-658,658-668,706-715
3gtq C:59-70,96-105,110-116,140-148
3gtl C:59-70,96-106,110-116,140-144
2wsk A:485-506,606-613,615-622,643-650
3i4m C:59-71,96-105,110-116,140-148
4a59 C:232-249,483-491,585-590,592-598
2q10 A:85-94,105-115,133-139,140-147
2q10 B:85-94,105-115,131-139,140-148
3a24 A:525-537,589-599,599-609,644-653
3a24 B:525-537,589-599,599-609,644-653
3lzk A:87-99,134-148,216-224,225-234
3lzk D:87-99,134-148,216-224,225-234
2zq0 B:582-594,648-658,658-667,707-715
2zq0 A:582-594,648-658,658-667,707-715
2oaa B:79-89,95-104,126-136,138-148
2oaa A:79-89,95-104,126-136,138-148
3lrl A:272-287,353-363,366-372,452-458
3e7b B:68-80,262-269,278-287,289-298
2r1v A:107-116,119-124,145-150,151-156
2r1v B:107-116,119-124,145-150,151-156
3noq B:104-113,117-121,141-146,147-152
3noq A:102-111,115-119,139-144,145-150
3s52 A:26-34,67-79,144-152,153-162
3s52 C:26-34,67-79,144-152,153-162
3a4a A:364-382,534-543,546-550,576-580
3n7t A:142-151,161-165,210-215,216-221
3khw B:611-619,643-649,662-668,669-675
3s1r C:59-71,96-105,110-116,140-148
3egx A:3-16,16-21,475-488,490-504
3qsm A:201-209,213-217,325-330,335-341
3pov A:273-285,303-307,400-411,432-442
2vy6 A:611-619,642-649,662-668,669-675
3i59 A:0-9,46-52,52-60,66-75
2rk6 A:107-116,119-124,145-150,151-156
3oum A:145-157,177-184,199-206,208-215
3e9i C:276-297,305-310,398-408,409-418
3e9i D:276-297,305-310,398-408,409-418
3e9i B:276-297,305-310,398-408,409-418
3e9i A:276-297,305-310,398-408,409-418
3hov C:59-71,96-105,110-116,140-148
2c81 A:264-287,297-302,304-311,384-390
2oa9 A:79-89,95-104,126-136,138-148
3s14 C:59-71,96-105,110-116,140-148
3b36 A:107-116,119-124,145-150,151-156
3cc1 B:296-311,365-375,378-384,413-419
3cc1 A:296-311,365-375,378-384,413-419
3hvm A:28-47,48-54,274-279,280-287
3l3b A:138-152,152-156,180-185,186-192
3l3b B:138-152,152-156,180-185,186-192
3h3v D:59-71,96-105,110-115,140-148
1yby A:98-105,107-117,127-134,168-177
1yby B:98-105,107-117,127-136,170-177
3cw4 A:77-85,108-115,128-134,135-141
3a74 C:276-297,305-310,398-408,409-418
3a74 B:276-297,305-310,398-408,409-418
3a74 A:276-297,305-310,398-408,409-418
3a74 D:276-297,305-310,398-408,409-418
3cyf A:107-116,119-124,145-150,151-156
2vzv A:663-674,675-683,744-755,757-769
2vzv A:602-631,675-683,744-755,757-769
2vzv B:663-674,675-683,744-755,757-769
2vzv B:602-631,675-683,744-755,757-769
3fhi B:119-133,171-177,177-185,186-194
3gtp C:59-70,96-106,110-116,140-144
2v74 H:166-181,253-257,384-399,400-407
2v74 D:166-181,253-257,386-399,400-407
2v74 B:166-181,253-257,384-399,400-407
2v74 F:166-181,253-257,384-399,400-407
3cz9 A:107-116,119-124,145-150,151-156
3ogj C:102-116,153-160,160-168,169-177
3ei1 B:118-137,403-412,440-446,447-454
3i23 A:128-141,143-147,277-285,287-295
3egd A:3-16,16-21,475-488,490-504
2vxo A:104-115,115-119,175-181,182-188
2eef A:23-35,35-45,110-120,121-127
2zag B:699-711,726-737,809-818,947-963
2zag C:701-711,726-737,809-818,945-963
2zag A:699-711,726-737,809-818,947-963
2zag D:699-711,726-737,809-818,947-963
2fgz A:773-790,795-800,986-994,1005-1016
3hou O:59-71,96-105,110-116,140-148
3hou C:59-71,96-105,110-116,140-148
3la7 B:6-16,43-49,49-59,61-72
3b3a A:107-116,119-124,145-150,151-156
3kwj A:200-209,221-230,297-307,309-318
2vzt B:663-674,675-683,744-755,757-769
2vzt B:602-631,675-683,744-755,757-769
2vzt A:602-631,675-683,744-755,757-769
2vzt A:663-674,675-683,744-755,757-769
3h53 B:262-277,334-344,348-354,385-391
3h53 A:262-277,334-344,348-354,385-391
3ezg A:107-116,119-124,145-150,151-156
2iss F:78-85,100-106,157-162,163-168
2iss D:78-85,100-106,157-162,163-168
2iss E:78-85,100-106,157-162,163-168
2x09 B:663-674,675-683,744-755,757-769
2x09 B:602-631,675-683,744-755,757-769
2x09 A:602-631,675-683,744-755,757-769
2x09 A:663-674,675-683,744-755,757-769
3lrk A:272-287,353-363,366-372,452-458
2dh3 B:345-359,459-468,471-475,513-517
3e9h C:276-297,305-310,398-408,409-418
3e9h B:276-297,305-310,398-408,409-418
3e9h A:276-297,305-310,398-408,409-418
3e9h D:276-297,305-310,398-408,409-418
3efo A:3-16,16-21,475-488,490-505
3s16 C:59-70,96-105,110-116,140-148
2jkp B:582-594,648-658,658-667,707-715
2jkp A:582-594,648-658,658-667,707-715
3gtm C:59-70,96-105,110-116,140-148
3a47 A:364-382,534-543,546-550,576-580
3qse A:201-209,213-217,325-330,335-341
3h0g C:58-70,100-108,114-119,141-149
3h0g O:58-70,100-108,114-119,141-149
3nov A:105-114,118-122,142-147,148-153
3ifv A:7-23,24-28,32-40,44-53
3a23 A:292-307,365-375,378-384,412-418
3a23 B:292-307,365-375,378-384,412-418
2qas A:12-35,95-104,106-114,115-121
3fhd A:273-285,303-307,399-411,432-442
3agr B:208-225,459-467,559-563,567-572
2y1w D:166-181,253-257,384-399,400-407
2y1w A:166-181,253-257,384-399,400-407
2y1w C:166-181,253-257,384-399,400-407
2y1w B:166-181,253-257,384-399,400-407
3sbu A:176-188,232-239,248-257,260-270
3sbu B:174-188,232-239,248-257,260-270
3gcx A:430-438,453-467,643-651,652-659
3kkl B:139-147,159-163,208-213,214-219
3kkl A:138-145,159-163,208-213,214-219
3apn A:320-331,332-337,589-593,594-600
3g3s B:17-26,40-48,168-181,182-191
3g3s A:17-26,40-48,168-181,182-191
3non A:102-111,114-119,139-144,145-150
3non B:105-114,118-122,142-147,148-153
3mgk A:103-112,115-120,143-148,149-154
3mgk B:103-112,116-120,143-148,149-154
3lq9 A:89-106,114-119,144-154,155-165
3h55 B:262-277,334-344,348-354,385-391
3h55 A:262-277,334-344,348-354,385-391
3cza A:107-116,119-124,145-150,151-156
3h54 B:262-277,334-344,348-354,385-391
3h54 A:262-277,334-344,348-354,385-391
3lfm A:35-47,48-54,268-276,283-289
3aj7 A:364-382,534-543,546-550,576-580
3pkx A:145-157,177-184,199-206,208-215
3i4n C:59-71,96-105,110-116,140-148
3axi A:364-382,534-543,546-550,576-580
3tqi D:86-97,97-101,162-172,173-179
3s2d C:59-70,96-105,110-116,140-148
2qtw B:430-438,456-467,643-651,652-659
2qaz C:12-35,95-104,106-114,115-121
2qaz A:12-35,95-104,106-114,115-121
2qaz D:12-34,97-104,106-114,115-121
2qaz B:12-35,95-104,106-114,115-121
3cne B:110-121,124-129,147-152,153-158
3cne D:110-121,124-129,147-152,153-158
3cne A:110-121,140-144,147-152,153-158
3cne B:110-121,140-144,147-152,153-158
3cne A:110-121,124-129,147-152,153-158
3cne C:110-121,140-144,147-152,153-158
3cne D:110-121,140-144,147-152,153-158
3cne C:110-121,124-129,147-152,153-158
2jka A:582-594,648-658,658-668,706-715
2jka B:582-594,648-658,658-668,706-715
3bju C:346-367,382-387,481-491,492-501
3bju A:346-367,382-387,481-491,492-501
3bju D:346-367,380-387,481-491,492-501
3bju B:346-367,382-387,481-491,492-501
3da1 A:228-240,245-259,358-363,365-370
3r2v A:611-619,642-649,662-668,669-675
3hoz C:59-71,96-105,110-116,140-148
3l18 B:101-110,114-118,138-143,144-149
3l18 A:101-110,114-118,138-143,144-149
2fh8 A:773-790,795-800,986-994,1005-1016
3pkw A:145-157,177-184,199-206,208-215
3f71 A:107-116,119-124,145-150,151-156
3shr B:86-101,138-144,144-152,153-161
2rk3 A:107-116,119-124,145-150,151-156
3ei3 B:118-137,403-412,440-446,447-454
2jke A:582-594,648-658,658-667,707-715
2jke B:582-594,648-658,658-667,707-715
2odi A:85-94,105-115,131-139,140-148
2odi B:85-94,105-115,131-139,140-148
3l53 B:25-33,66-78,145-153,154-162
3l53 A:25-33,66-78,145-153,154-162
3l53 D:25-33,66-78,145-153,154-162
3l53 E:25-33,66-78,145-153,154-162
3l53 C:25-33,66-78,145-153,154-162
3l53 F:25-33,66-78,145-153,154-162
3rzo C:59-71,96-105,110-116,140-148
3hoy C:59-71,96-105,110-116,140-148
3j0k C:59-71,96-105,110-116,140-148
3rzd C:59-70,96-105,110-116,140-148
4a57 C:232-249,483-491,585-589,593-598
3l7n A:92-102,103-107,161-170,172-177
2ywj A:75-83,96-102,152-157,158-163
3h7k A:40-59,59-65,314-318,319-325
3f6k A:58-67,512-518,548-559,560-571
2d7j A:80-90,90-96,147-156,159-164
2k78 A:46-54,97-106,110-126,127-144
3ei4 B:82-104,369-378,406-412,413-419
3ei4 F:82-104,369-378,406-412,413-419
3ei4 D:82-104,369-378,406-412,413-419
3nxd C:113-120,223-230,249-265,267-273
3nxd E:113-120,223-230,249-265,267-273
3nxd B:113-120,223-230,249-265,267-273
3nxd A:113-120,223-230,249-265,267-273
3nxd D:113-120,223-230,249-265,267-273
3igu B:262-277,334-344,348-354,385-391
3igu A:262-277,334-344,348-354,385-391
3d54 D:87-96,100-104,171-175,179-184
3d54 H:87-96,100-104,171-175,179-184
3d54 L:87-96,100-104,171-175,179-184
3bps A:430-438,453-467,642-651,652-660
2r7z C:59-71,96-105,110-115,140-148
2jer G:42-61,61-67,307-311,312-318
2jer H:42-61,61-67,307-311,312-318
3cqz C:59-71,96-105,110-116,140-148
2r93 C:59-71,96-105,110-116,140-148
2r92 C:59-71,96-105,110-115,140-148