4. c.109.1 PEP carboxykinase N-terminal domain PEP carboxykinase N-terminal domain contains mixed beta-sheets; topology is partly similar to that of the catalytic C-terminal domain 1ii2 d1ii2b2 B:114-126,140-147,180-200,256-262 1ii2 d1ii2a2 A:114-126,140-147,180-200,256-262 2pc9 d2pc9a2 A:122-134,151-158,191-211,267-273 1xkv d1xkva2 A:122-134,151-158,191-211,267-273 1j3b d1j3bb2 B:122-134,151-158,191-211,267-273 1xkv d1xkvb2 B:122-134,151-158,191-211,267-273 1j3b d1j3ba2 A:122-134,151-158,191-211,267-273 2pc9 d2pc9c2 C:122-134,151-158,191-211,267-273 2pc9 d2pc9b2 B:122-134,151-158,191-211,267-273 2pc9 d2pc9d2 D:122-134,151-158,191-211,267-273 1oen d1oena2 A:141-153,166-173,207-227,283-289 2olq d2olqa2 A:141-153,166-173,207-227,283-289 1os1 d1os1a2 A:141-153,166-173,207-227,283-289 1k3d d1k3da2 A:141-153,166-173,207-227,283-289 2py7 d2py7x2 X:141-153,166-173,207-227,283-289 2pxz d2pxzx2 X:141-153,166-173,207-227,283-289 1k3c d1k3ca2 A:141-153,166-173,207-227,283-289 2olr d2olra2 A:141-153,166-173,207-227,283-289 1ayl d1ayla2 A:141-153,166-173,207-227,283-289 1aq2 d1aq2a2 A:141-153,166-173,207-227,283-289 6. c.92.2 "Helical backbone" metal receptor contains a long alpha helical insertion in the interdomain linker ! Chelatase-like duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134 1n2c d1n2cb_ B:70-83,145-152,192-210,223-229 1n2c d1n2cd_ D:70-83,145-152,192-210,223-229 1fp4 d1fp4b_ B:70-83,145-152,192-213,223-229 2min d2mind_ D:70-83,145-152,192-213,223-229 1g20 d1g20d_ D:70-83,145-152,192-213,223-229 1m1n d1m1nd_ D:70-83,145-152,192-213,223-229 1m1n d1m1nh_ H:70-83,145-152,192-213,223-229 1m1n d1m1nf_ F:70-83,145-152,192-213,223-229 2afi d2afil1 L:70-83,145-152,192-213,223-229 2afi d2afij1 J:70-83,145-152,192-213,223-229 2afi d2afib1 B:70-83,145-152,192-213,223-229 2afi d2afid1 D:70-83,145-152,192-213,223-229 3min d3minb_ B:70-83,145-152,192-213,223-229 2afk d2afkd1 D:70-83,145-152,192-213,223-229 2afk d2afkb1 B:70-83,145-152,192-213,223-229 1m34 d1m34j_ J:70-83,145-152,192-213,223-229 1l5h d1l5hb_ B:70-83,145-152,192-213,223-229 1n2c d1n2cb_ B:70-83,180-185,192-210,223-229 1n2c d1n2cd_ D:70-83,180-185,192-210,223-229 1qgu d1qgub_ B:68-81,143-150,190-208,219-224 1qh1 d1qh1b_ B:68-81,143-150,190-208,219-224 1g20 d1g20d_ D:70-83,180-185,192-213,223-229 1fp4 d1fp4b_ B:70-83,180-185,192-213,223-229 1m1n d1m1nh_ H:70-83,180-185,192-213,223-229 1m1n d1m1nf_ F:70-83,180-185,192-213,223-229 1m1n d1m1nd_ D:70-83,180-185,192-213,223-229 1qh8 d1qh8d_ D:68-81,143-150,190-210,219-224 2min d2mind_ D:70-83,180-185,192-213,223-229 2afi d2afij1 J:70-83,180-185,192-213,223-229 2afi d2afib1 B:70-83,180-185,192-213,223-229 2afi d2afil1 L:70-83,180-185,192-213,223-229 1qh1 d1qh1d_ D:68-81,143-150,190-210,219-224 1l5h d1l5hb_ B:70-83,180-185,192-213,223-229 2afk d2afkb1 B:70-83,180-185,192-213,223-229 2afi d2afid1 D:70-83,180-185,192-213,223-229 3min d3minb_ B:70-83,180-185,192-213,223-229 1h1l d1h1ld_ D:68-81,143-150,190-210,219-224 2afk d2afkd1 D:70-83,180-185,192-213,223-229 1n2c d1n2cb_ B:70-83,84-91,192-210,223-229 1n2c d1n2cd_ D:70-83,84-91,192-210,223-229 1m34 d1m34j_ J:70-83,180-185,192-213,223-229 1g21 d1g21d_ D:70-83,145-152,192-213,223-228 1g21 d1g21b_ B:70-83,145-152,192-213,223-228 1qh8 d1qh8d_ D:68-81,177-183,190-210,219-224 1h1l d1h1ld_ D:68-81,177-183,190-210,219-224 1qh1 d1qh1d_ D:68-81,177-183,190-210,219-224 1qgu d1qgub_ B:68-81,177-183,190-208,219-224 1qh1 d1qh1b_ B:68-81,177-183,190-208,219-224 1fp4 d1fp4b_ B:70-83,84-91,192-213,223-229 1g20 d1g20d_ D:70-83,84-91,192-213,223-229 2min d2mind_ D:70-83,84-91,192-213,223-229 1m1n d1m1nf_ F:70-83,84-91,192-213,223-229 1m1n d1m1nh_ H:70-83,84-91,192-213,223-229 1m1n d1m1nd_ D:70-83,84-91,192-213,223-229 3min d3minb_ B:70-83,84-91,192-213,223-229 2afi d2afij1 J:70-83,84-91,192-213,223-229 2afi d2afil1 L:70-83,84-91,192-213,223-229 1l5h d1l5hb_ B:70-83,84-91,192-213,223-229 1g20 d1g20b_ B:70-82,145-152,192-213,223-229 2afi d2afib1 B:70-83,84-91,192-213,223-229 2afi d2afid1 D:70-83,84-91,192-213,223-229 1fp4 d1fp4d_ D:70-82,145-152,192-213,223-229 2afk d2afkd1 D:70-83,84-91,192-213,223-229 1m34 d1m34j_ J:70-83,84-91,192-213,223-229 3min d3mind_ D:70-82,145-152,192-213,223-229 2afk d2afkb1 B:70-83,84-91,192-213,223-229 2afh d2afhd1 D:70-82,145-152,192-213,223-229 2min d2minb_ B:70-82,145-152,192-213,223-229 1h1l d1h1lb_ B:68-80,143-150,190-208,219-225 2afh d2afhb1 B:70-82,145-152,192-213,223-229 1m1y d1m1yl_ L:70-82,145-152,192-213,223-229 1m1n d1m1nb_ B:70-82,145-152,192-213,223-229 1m34 d1m34d_ D:70-82,145-152,192-213,223-229 1m34 d1m34b_ B:70-82,145-152,192-213,223-229 1m34 d1m34l_ L:70-82,145-152,192-213,223-229 1mio d1miod_ D:23-35,98-105,145-162,171-177 1qh8 d1qh8b_ B:68-80,143-150,190-208,219-224 2min d2minb_ B:70-82,180-185,192-213,223-229 1g21 d1g21b_ B:70-83,180-184,192-213,223-228 3min d3mind_ D:70-82,180-185,192-213,223-229 1fp4 d1fp4d_ D:70-82,180-185,192-213,223-229 2afh d2afhd1 D:70-82,180-185,192-213,223-229 1g21 d1g21d_ D:70-83,180-184,192-213,223-228 2afh d2afhb1 B:70-82,180-185,192-213,223-229 1g20 d1g20b_ B:70-82,180-185,192-213,223-229 1m1n d1m1nb_ B:70-82,180-185,192-213,223-229 1m34 d1m34d_ D:70-82,180-185,192-213,223-229 1m1y d1m1yl_ L:70-82,180-185,192-213,223-229 1m34 d1m34b_ B:70-82,180-185,192-213,223-229 1qgu d1qgud_ D:68-80,143-150,190-210,219-224 1mio d1miob_ B:23-35,98-105,145-162,171-177 1m34 d1m34l_ L:70-82,180-185,192-213,223-229 1g21 d1g21b_ B:70-83,84-92,192-213,223-228 1h1l d1h1lb_ B:68-80,177-183,190-208,219-225 1m1y d1m1yj_ J:70-81,145-152,192-213,223-229 1m1y d1m1yb_ B:70-81,145-152,192-213,223-229 1m1y d1m1yd_ D:70-81,145-152,192-213,223-229 1h1l d1h1lb_ B:68-80,82-89,190-208,219-225 1mio d1miod_ D:23-35,37-44,145-162,171-177 2min d2minb_ B:70-82,84-91,192-213,223-229 1mio d1miod_ D:23-35,132-140,145-162,171-177 1g20 d1g20b_ B:70-82,84-91,192-213,223-229 1fp4 d1fp4d_ D:70-82,84-91,192-213,223-229 2afh d2afhd1 D:70-82,84-91,192-213,223-229 2afh d2afhb1 B:70-82,84-91,192-213,223-229 3min d3mind_ D:70-82,84-91,192-213,223-229 1m1n d1m1nb_ B:70-82,84-91,192-213,223-229 1m34 d1m34d_ D:70-82,84-91,192-213,223-229 1qh8 d1qh8b_ B:68-80,177-183,190-208,219-224 1m34 d1m34b_ B:70-82,84-91,192-213,223-229 1m34 d1m34l_ L:70-82,84-91,192-213,223-229 1m1y d1m1yl_ L:70-82,84-91,192-213,223-229 1qgu d1qgud_ D:68-80,177-183,190-210,219-224 1mio d1miob_ B:23-35,132-140,145-162,171-177 1qh8 d1qh8b_ B:68-80,82-89,190-208,219-224 1mio d1miob_ B:23-35,37-44,145-162,171-177 1m1y d1m1yb_ B:70-81,180-185,192-213,223-229 1m1y d1m1yj_ J:70-81,180-185,192-213,223-229 1m1y d1m1yd_ D:70-81,180-185,192-213,223-229 1qgu d1qgud_ D:68-80,82-89,190-210,219-224 1m1y d1m1yj_ J:70-81,84-91,192-213,223-229 1m1y d1m1yb_ B:70-81,84-91,192-213,223-229 1m1y d1m1yd_ D:70-81,84-91,192-213,223-229 1mio d1mioc_ C:53-67,168-176,181-201,208-214 1n2c d1n2ca_ A:62-76,177-184,190-211,221-227 1n2c d1n2cc_ C:62-76,177-184,190-211,221-227 1m34 d1m34i_ I:62-76,177-184,190-211,221-227 1g21 d1g21c_ C:62-76,177-184,190-211,221-227 1g21 d1g21a_ A:62-76,177-184,190-211,221-227 1m34 d1m34a_ A:62-76,177-184,190-211,221-227 2afi d2afic1 C:62-76,177-185,190-211,221-227 1h1l d1h1la_ A:61-75,176-184,189-210,219-225 2afi d2afii1 I:62-76,177-185,190-211,221-227 1fp4 d1fp4a_ A:62-76,177-185,190-211,221-227 1fp4 d1fp4c_ C:62-76,177-185,190-211,221-227 2afi d2afik1 K:62-76,177-185,190-211,221-227 2afi d2afia1 A:62-76,177-185,190-211,221-227 1l5h d1l5ha_ A:62-76,177-185,190-209,221-227 1qh8 d1qh8c_ C:61-75,176-184,189-210,219-225 1m34 d1m34c_ C:62-76,177-184,190-211,221-227 1n2c d1n2ca_ A:62-76,146-153,190-211,221-227 1n2c d1n2cc_ C:62-76,146-153,190-211,221-227 2min d2minc_ C:62-76,177-185,190-211,221-227 3min d3mina_ A:62-76,177-185,190-211,221-227 1g20 d1g20c_ C:62-76,177-184,190-211,221-227 1g20 d1g20a_ A:62-76,177-184,190-211,221-227 1h1l d1h1lc_ C:61-75,176-184,189-210,219-225 2min d2mina_ A:62-76,177-185,190-211,221-227 1m1n d1m1ne_ E:62-76,177-185,190-211,221-227 2afh d2afhc1 C:62-76,177-185,190-211,221-227 2afk d2afka1 A:62-76,177-184,190-211,221-227 1m1n d1m1nc_ C:62-76,177-185,190-211,221-227 2afk d2afkc1 C:62-76,177-184,190-211,221-227 2afh d2afha1 A:62-76,177-185,190-211,221-227 1m1n d1m1ng_ G:62-76,177-185,190-211,221-227 1m1n d1m1na_ A:62-76,177-185,190-211,221-227 1m34 d1m34i_ I:62-76,146-153,190-211,221-227 1fp4 d1fp4a_ A:62-76,146-154,190-211,221-227 1fp4 d1fp4c_ C:62-76,146-154,190-211,221-227 1g21 d1g21c_ C:62-76,146-153,190-211,221-227 1mio d1mioc_ C:53-67,137-145,181-201,208-214 1m34 d1m34a_ A:62-76,146-153,190-211,221-227 1g21 d1g21a_ A:62-76,146-153,190-211,221-227 1l5h d1l5ha_ A:62-76,146-154,190-209,221-227 2min d2minc_ C:62-76,146-154,190-211,221-227 1m34 d1m34c_ C:62-76,146-153,190-211,221-227 1g20 d1g20c_ C:62-76,146-153,190-211,221-227 1g20 d1g20a_ A:62-76,146-153,190-211,221-227 3min d3mina_ A:62-76,146-154,190-211,221-227 2min d2mina_ A:62-76,146-154,190-211,221-227 1h1l d1h1la_ A:61-75,145-153,189-210,219-225 1m1n d1m1ne_ E:62-76,146-154,190-211,221-227 1mio d1mioa_ A:53-67,168-176,181-198,208-214 1m1n d1m1nc_ C:62-76,146-154,190-211,221-227 1m1n d1m1ng_ G:62-76,146-154,190-211,221-227 2afh d2afhc1 C:62-76,146-154,190-211,221-227 1qh8 d1qh8c_ C:61-75,145-153,189-210,219-225 2afh d2afha1 A:62-76,146-154,190-211,221-227 1m1n d1m1na_ A:62-76,146-154,190-211,221-227 2afk d2afka1 A:62-76,146-153,190-211,221-227 2afk d2afkc1 C:62-76,146-153,190-211,221-227 1h1l d1h1lc_ C:61-75,145-153,189-210,219-225 3min d3minc_ C:62-76,177-185,190-213,221-227 3min d3minc_ C:62-76,146-154,190-213,221-227 10. d.193.1 Hsp33 domain Hsp33 domain 3 layers: beta/alpha/beta; buried helix 1vq0 d1vq0a1 A:33-54,58-68,135-149,150-162 1vq0 d1vq0b1 B:33-54,58-68,135-149,150-162 1hw7 d1hw7a_ A:40-61,64-75,137-151,153-164 1vzy d1vzya1 A:35-57,60-69,138-152,153-165 1i7f d1i7fa_ A:40-61,64-74,137-151,153-164 1vzy d1vzyb1 B:35-57,60-69,138-152,154-165 12. c.119.1 DAK1/DegV-like domain folds and architecture show some similarity to the tubulin-like GTPases; the nucleotide-binding sites of the Dihydroxyacetone kinase and tubulin families are different ! DAK1/DegV-like 2 different domains; d1: [core: 3 layers, a/b/a; parallel sheet of 5 strands, order: 2134]; D2: [2 layers, a/b; mixed sheet of 6 strands, order 321645; strands 2 and 6 are antiparallel to the rest] 1oi3 d1oi3a_ A:66-74,107-115,159-177,358-362 1uod d1uoda_ A:66-74,107-115,159-177,358-362 1uoe d1uoea_ A:66-74,107-115,159-177,358-362 1uod d1uodb_ B:66-74,107-115,159-177,358-362 1oi3 d1oi3b_ B:66-74,107-115,159-177,358-362 1oi2 d1oi2a_ A:66-74,107-115,159-177,358-362 1oi2 d1oi2b_ B:66-74,107-115,159-177,358-362 1uoe d1uoeb_ B:66-74,107-115,159-177,358-362 1pzx d1pzxa_ A:14-22,23-27,122-140,257-263 1pzx d1pzxb_ B:14-22,23-27,122-140,257-263 23. c.142.1 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214 2fug d2fugs2 S:101-111,128-136,220-234,248-256 2fug d2fugj2 J:101-111,128-136,220-234,248-256 2fug d2fug12 1:101-111,128-136,220-234,248-256 2fug d2fuga2 A:101-111,128-136,220-234,248-256