2. d.228.1 Replication modulator SeqA, C-terminal DNA-binding domain Replication modulator SeqA, C-terminal DNA-binding domain consists of seven alpha-helices and three-stranded beta-sheet 1iu3 d1iu3f_ F:21-38,80-85,87-103,105-116 1lrr d1lrrd_ D:86-103,145-150,152-168,170-181 1iu3 d1iu3c_ C:21-38,80-85,87-103,105-116 1lrr d1lrra_ A:86-103,145-150,152-168,170-181 1j3e d1j3ea_ A:21-38,80-85,87-103,105-116 8. c.72.2 MurD-like peptide ligases, catalytic domain has extra strand located between strands 1 and 2 ! Ribokinase-like core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest ! potential superfamily: members of this fold have similar functions but different ATP-binding sites 1gqq d1gqqb3 B:125-144,187-194,289-307,309-320 1j6u d1j6ua3 A:112-128,171-178,263-281,283-294 1p31 d1p31b3 B:128-144,187-194,289-307,309-320 1p31 d1p31a3 A:128-144,187-194,289-307,309-320 1p3d d1p3da3 A:128-144,187-194,289-307,309-320 1gqy d1gqyb3 B:128-144,187-194,289-307,309-320 1gqy d1gqya3 A:128-144,187-194,289-307,309-320 1p3d d1p3db3 B:128-144,187-194,289-307,309-320 1o5z d1o5za2 A:47-66,158-165,257-275,279-290 1gqq d1gqqa3 A:128-144,187-194,289-307,309-320 1e0d d1e0da3 A:114-130,172-178,265-283,285-296 1e8c d1e8ca3 A:118-134,199-206,304-322,324-335 1uag d1uaga3 A:114-130,172-178,265-283,285-296 2uag d2uaga3 A:114-130,172-179,265-283,285-297 2uag d2uaga3 A:114-130,152-158,265-283,285-297 2uuo d2uuoa3 A:114-130,172-178,265-283,285-296 1eeh d1eeha3 A:114-130,172-177,265-283,285-296 1e8c d1e8cb3 B:118-134,199-206,304-322,324-335 1gg4 d1gg4b4 B:610-626,677-684,779-797,799-810 1p31 d1p31a3 A:128-144,168-174,289-307,309-320 1p31 d1p31b3 B:128-144,168-174,289-307,309-320 1p3d d1p3da3 A:128-144,168-174,289-307,309-320 1p3d d1p3db3 B:128-144,168-174,289-307,309-320 4uag d4uaga3 A:114-130,172-179,265-283,285-296 2gca d2gcaa2 A:46-65,159-165,258-280,284-295 1gqy d1gqya3 A:128-144,168-174,289-307,309-320 2jfg d2jfga3 A:114-130,172-179,265-283,285-296 2jff d2jffa3 A:114-130,172-179,265-283,285-296 1gqy d1gqyb3 B:128-144,168-174,289-307,309-320 2uup d2uupa3 A:114-130,152-158,265-283,285-296 2jff d2jffa3 A:114-130,152-158,265-283,285-296 1gg4 d1gg4a4 A:110-126,176-184,279-297,299-310 2uuo d2uuoa3 A:114-130,152-158,265-283,285-296 1fgs d1fgsa2 A:46-65,158-165,258-280,284-296 2uup d2uupa3 A:114-130,172-179,265-283,285-296 2jfg d2jfga3 A:114-130,152-158,265-283,285-296 4uag d4uaga3 A:114-130,152-158,265-283,285-296 3uag d3uaga3 A:114-130,172-179,265-283,285-296 1uag d1uaga3 A:114-130,152-158,265-283,285-296 2jfh d2jfha3 A:114-130,172-179,265-283,285-296 3uag d3uaga3 A:114-130,152-158,265-283,285-296 1e0d d1e0da3 A:114-130,152-158,265-283,285-296 2jfh d2jfha3 A:114-130,152-158,265-283,285-296 1jbw d1jbwa2 A:49-65,138-144,258-280,284-295 1gg4 d1gg4b4 B:610-626,653-659,779-797,799-810 1jbv d1jbva2 A:49-65,159-166,258-280,284-296 1jbw d1jbwa2 A:49-65,159-166,258-280,284-295 2gc6 d2gc6a2 A:49-65,158-166,258-280,284-296 1eeh d1eeha3 A:114-130,152-158,265-283,285-296 2gc5 d2gc5a2 A:46-65,159-166,258-280,284-295 1e8c d1e8ca3 A:118-134,177-183,304-322,324-335 2gcb d2gcba2 A:46-65,158-166,258-280,284-295 1gg4 d1gg4a4 A:110-126,153-159,279-297,299-310 1e8c d1e8cb3 B:118-134,177-183,304-322,324-335 2gca d2gcaa2 A:46-65,138-144,258-280,284-295 2gc5 d2gc5a2 A:46-65,138-144,258-280,284-295 2gcb d2gcba2 A:46-65,138-144,258-280,284-295 1jbv d1jbva2 A:49-65,192-198,258-280,284-296 2gc6 d2gc6a2 A:49-65,192-198,258-280,284-296 1o5z d1o5za2 A:47-66,192-199,257-275,279-290 1jbw d1jbwa2 A:49-65,192-198,258-280,284-295 2gca d2gcaa2 A:46-65,192-198,258-280,284-295 2gcb d2gcba2 A:46-65,192-198,258-280,284-295 2gc5 d2gc5a2 A:46-65,192-198,258-280,284-295 1fgs d1fgsa2 A:46-65,192-198,258-280,284-296 9. c.77.1 Isocitrate/Isopropylmalate dehydrogenase-like the constituent families form similar dimers ! Isocitrate/Isopropylmalate dehydrogenase-like consists of two intertwined (sub)domains related by pseudo dyad; duplication ! 3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest 1w0d d1w0db_ B:9-28,61-68,283-299,300-319 2g4o d2g4oc1 C:9-28,61-68,283-299,300-319 2g4o d2g4oa1 A:9-28,61-68,283-299,300-319 1w0d d1w0dd_ D:9-28,61-68,283-299,300-319 2g4o d2g4od1 D:9-28,61-68,283-299,300-319 1gc8 d1gc8b_ B:9-31,65-72,286-303,304-323 1w0d d1w0dc_ C:9-28,61-68,283-299,300-319 1w0d d1w0da_ A:9-28,61-68,283-299,300-319 1xac d1xaca_ A:9-31,65-72,286-303,304-323 1xaa d1xaaa_ A:9-31,65-72,286-303,304-323 1g2u d1g2ua_ A:9-31,65-72,286-303,304-323 1xab d1xaba_ A:9-31,65-72,286-303,304-323 1osi d1osia_ A:9-31,65-72,286-303,304-323 1gc9 d1gc9a_ A:9-31,65-72,286-303,304-323 1dr0 d1dr0a_ A:9-31,65-72,286-303,304-323 1dr8 d1dr8b_ B:9-31,65-72,286-303,304-323 1dr8 d1dr8a_ A:9-31,65-72,286-303,304-323 1osi d1osib_ B:9-31,65-72,286-303,304-323 1osj d1osjb_ B:9-31,65-72,286-303,304-323 2g4o d2g4ob1 B:9-28,61-68,283-299,300-319 1gc8 d1gc8a_ A:1009-1031,1065-1072,1286-1303,1304-1323 1osj d1osja_ A:9-31,65-72,286-303,304-323 1dr0 d1dr0b_ B:9-31,65-72,286-303,304-323 1dpz d1dpza_ A:9-31,65-72,286-303,304-323 1hex d1hexa_ A:9-31,65-72,286-303,304-323 1dpz d1dpzb_ B:9-31,65-72,286-303,304-323 1osi d1osic_ C:8-31,65-72,286-303,304-323 1osi d1osid_ D:8-31,65-72,286-303,304-323 1a05 d1a05b_ B:10-32,66-73,291-308,309-327 1xad d1xada_ A:8-31,65-72,286-303,304-323 2ayq d2ayqb_ B:11-33,67-74,292-309,310-328 1hqs d1hqsb_ B:27-51,87-94,358-374,375-393 1ipd d1ipda_ A:8-31,65-72,286-303,304-323 1idc d1idca_ A:34-58,96-103,352-368,369-387 1wal d1wala_ A:8-31,65-72,286-303,304-323 1v53 d1v53b1 B:10-30,67-74,292-309,310-328 1idm d1idma_ A:8-31,65-72,284-301,302-321 1bl5 d1bl5a_ A:34-58,96-103,352-368,369-387 1idf d1idfa_ A:34-58,96-102,352-368,369-387 2ayq d2ayqa_ A:11-33,67-74,292-309,310-328 1a05 d1a05a_ A:10-32,66-73,291-308,309-327 1cm7 d1cm7b_ B:13-35,69-76,297-314,315-333 1ai2 d1ai2a_ A:34-58,96-103,352-368,369-387 4icd d4icda_ A:34-58,96-103,352-368,369-387 1ide d1idea_ A:34-58,96-103,352-368,369-387 1pb3 d1pb3a_ A:34-58,96-103,352-368,369-387 8icd d8icda_ A:34-58,96-103,352-368,369-387 3icd d3icda_ A:34-58,96-103,352-368,369-387 1v53 d1v53a1 A:11-33,67-74,292-309,310-328 1sjs d1sjsa_ A:34-58,96-103,352-368,369-387 1vlc d1vlca_ A:9-31,65-72,287-304,305-323 1ai3 d1ai3a_ A:34-58,96-103,352-368,369-387 7icd d7icda_ A:34-58,96-103,352-368,369-387 1ika d1ikaa_ A:34-58,96-102,352-368,369-387 1hqs d1hqsa_ A:27-51,87-94,358-374,375-393 1hj6 d1hj6a_ A:34-58,96-103,352-368,369-387 1grp d1grpa_ A:34-58,96-103,352-368,369-387 1cw4 d1cw4a_ A:34-58,96-103,352-368,369-387 9icd d9icda_ A:34-58,96-103,352-368,369-387 1p8f d1p8fa_ A:34-58,96-103,352-368,369-387 5icd d5icda_ A:34-58,96-103,352-368,369-387 6icd d6icda_ A:34-58,96-103,352-368,369-387 1pb1 d1pb1a_ A:34-58,96-103,352-368,369-387 1gro d1groa_ A:34-58,96-103,352-368,369-387 1cw1 d1cw1a_ A:34-58,96-103,352-368,369-387 1iso d1isoa_ A:34-58,96-103,352-368,369-387 1idd d1idda_ A:34-58,96-102,352-368,369-387 1cw7 d1cw7a_ A:34-58,96-102,352-368,369-387 1cnz d1cnza_ A:13-35,69-76,297-314,315-333 1cnz d1cnzb_ B:13-35,69-76,297-314,315-333 1t0l d1t0lc_ C:16-34,68-74,328-348,349-370 1idc d1idca_ A:34-58,61-68,352-368,369-387 1ai2 d1ai2a_ A:34-58,61-68,352-368,369-387 1ai3 d1ai3a_ A:34-58,61-68,352-368,369-387 1cw7 d1cw7a_ A:34-58,61-68,352-368,369-387 1p8f d1p8fa_ A:34-58,61-68,352-368,369-387 1wpw d1wpwa_ A:9-32,66-74,269-289,290-311 1cw4 d1cw4a_ A:34-58,61-68,352-368,369-387 1pb3 d1pb3a_ A:34-58,61-68,352-368,369-387 1hqs d1hqsb_ B:27-51,54-61,358-374,375-393 1iso d1isoa_ A:34-58,61-68,352-368,369-387 1pb1 d1pb1a_ A:34-58,61-68,352-368,369-387 1itw d1itwb_ B:12-34,75-84,602-622,623-644 1bl5 d1bl5a_ A:34-58,61-68,352-368,369-387 1hj6 d1hj6a_ A:34-58,61-68,352-368,369-387 1cw1 d1cw1a_ A:34-58,61-68,352-368,369-387 5icd d5icda_ A:34-58,61-68,352-368,369-387 4icd d4icda_ A:34-58,61-68,352-368,369-387 1itw d1itwd_ D:12-34,75-84,602-622,623-644 7icd d7icda_ A:34-58,61-68,352-368,369-387 9icd d9icda_ A:34-58,61-68,352-368,369-387 1itw d1itwa_ A:12-34,75-84,602-622,623-644 1itw d1itwc_ C:12-34,75-84,602-622,623-644 6icd d6icda_ A:34-58,61-68,352-368,369-387 3icd d3icda_ A:34-58,61-68,352-368,369-387 8icd d8icda_ A:34-58,61-68,352-368,369-387 1sjs d1sjsa_ A:34-58,61-68,352-368,369-387 1wpw d1wpwa_ A:9-32,34-40,269-289,290-311 1ide d1idea_ A:34-58,61-68,352-368,369-387 1cm7 d1cm7a_ A:13-35,69-78,297-314,315-333 1ika d1ikaa_ A:34-58,61-68,352-368,369-387 1idf d1idfa_ A:34-58,61-68,352-368,369-387 1gro d1groa_ A:34-58,61-68,352-368,369-387 1grp d1grpa_ A:34-58,61-68,352-368,369-387 1a05 d1a05b_ B:10-32,34-40,291-308,309-327 1hqs d1hqsa_ A:27-51,54-61,358-374,375-393 1cm7 d1cm7a_ A:13-35,36-43,297-314,315-333 1a05 d1a05a_ A:10-32,34-40,291-308,309-327 1wpw d1wpwb_ B:20-32,34-40,269-289,290-311 1itw d1itwb_ B:12-34,35-43,602-622,623-644 1itw d1itwd_ D:12-34,35-43,602-622,623-644 1idd d1idda_ A:34-58,61-68,352-368,369-387 1itw d1itwc_ C:12-34,35-43,602-622,623-644 1cnz d1cnza_ A:13-35,37-43,297-314,315-333 1itw d1itwa_ A:12-34,35-43,602-622,623-644 1cnz d1cnzb_ B:13-35,37-43,297-314,315-333 1vlc d1vlca_ A:9-31,32-39,287-304,305-323 1ai2 d1ai2a_ A:34-58,331-337,352-368,369-387 1ai3 d1ai3a_ A:34-58,331-337,352-368,369-387 1j1w d1j1wa_ A:22-34,35-42,602-622,623-644 1j1w d1j1wd_ D:22-34,35-42,602-622,623-644 1idd d1idda_ A:34-58,331-337,352-368,369-387 1cm7 d1cm7b_ B:13-35,35-43,297-314,315-333 1j1w d1j1wb_ B:22-34,35-43,602-622,623-644 1j1w d1j1wc_ C:22-34,35-43,602-622,623-644 1wpw d1wpwb_ B:20-32,66-74,269-289,290-311 1t09 d1t09a_ A:16-31,68-74,328-348,349-370 1t09 d1t09b_ B:16-31,68-74,328-348,349-370 1t0l d1t0ld_ D:16-31,68-74,328-348,349-370 1t0l d1t0lb_ B:16-31,68-74,328-348,349-370 1t0l d1t0la_ A:16-31,68-74,328-348,349-370 1lwd d1lwda_ A:17-32,69-75,328-348,349-370 11. c.107.1 DHH phosphoesterases constituent families have similar domain organization with variable interdomain linker and spatial arrangement of the domains ! DHH phosphoesterases consists of two non-similar domains ! Domain 1 has parallel sheet of 6 strands, order 321456 ! Domain 2 has mixed sheet of 5 strands, order 12345; strands 1 & 4 are antiparallel to the rest 1ir6 d1ir6a_ A:82-100,130-136,186-203,207-222 1ir6 d1ir6a_ A:82-100,153-160,186-203,207-222 1wpm d1wpmb_ B:13-31,69-75,118-131,135-151 2haw d2hawb1 B:13-31,69-75,118-131,135-151 1wpm d1wpma_ A:13-31,69-75,118-131,135-151 2haw d2hawa1 A:13-31,69-75,118-131,135-151 1wpn d1wpnb_ B:13-31,69-75,118-131,135-151 1wpn d1wpna_ A:13-31,69-75,118-131,135-151 1k23 d1k23c_ C:13-31,69-75,118-131,135-151 1k23 d1k23a_ A:13-31,69-75,118-131,135-151 1wpp d1wppa_ A:13-32,71-77,120-133,137-153 1k23 d1k23d_ D:13-31,69-75,118-131,135-151 1i74 d1i74b_ B:12-30,69-75,118-131,135-151 1k23 d1k23b_ B:13-31,69-75,118-131,135-151 1wpp d1wppb_ B:13-32,71-77,120-133,137-153 1i74 d1i74a_ A:12-30,69-75,118-131,135-151 1k20 d1k20a_ A:13-32,71-77,120-133,137-153 1k20 d1k20b_ B:13-32,71-77,120-133,137-153 2haw d2hawa1 A:13-31,89-97,118-131,135-151 1wpn d1wpna_ A:13-31,89-97,118-131,135-151 2haw d2hawb1 B:13-31,89-97,118-131,135-151 1k23 d1k23c_ C:13-31,89-97,118-131,135-151 1k23 d1k23a_ A:13-31,89-97,118-131,135-151 1wpn d1wpnb_ B:13-31,89-97,118-131,135-151 1wpm d1wpmb_ B:13-31,89-97,118-131,135-151 1wpm d1wpma_ A:13-31,89-97,118-131,135-151 1wpp d1wppa_ A:13-32,91-99,120-133,137-153 1k20 d1k20a_ A:13-32,91-99,120-133,137-153 1k23 d1k23b_ B:13-31,89-97,118-131,135-151 1k23 d1k23d_ D:13-31,89-97,118-131,135-151 1i74 d1i74b_ B:12-30,89-97,118-131,135-151 1k20 d1k20b_ B:13-32,91-99,120-133,137-153 1wpp d1wppb_ B:13-32,91-99,120-133,137-153 1i74 d1i74a_ A:12-30,89-97,118-131,135-151 15. c.1.13 Malate synthase G TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 1d8c d1d8ca_ A:588-614,619-623,652-672,687-700 2jqx d2jqxa1 A:588-614,619-623,652-675,687-700 1n8w d1n8wa_ A:590-616,619-625,654-676,689-702 2gq3 d2gq3b1 B:590-616,619-625,654-674,689-702 2gq3 d2gq3a1 A:590-616,619-625,654-674,689-702 1n8w d1n8wb_ B:590-616,619-625,654-674,689-702 1n8i d1n8ia_ A:590-616,619-625,654-673,689-702 1p7t d1p7ta_ A:588-614,617-623,652-672,687-700 17. c.92.2 "Helical backbone" metal receptor contains a long alpha helical insertion in the interdomain linker ! Chelatase-like duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134 1toa d1toab_ B:40-52,84-89,137-157,159-189 1k0f d1k0fa_ A:40-52,84-90,137-157,159-189 1toa d1toaa_ A:40-52,84-89,137-157,159-189 1mio d1mioa_ A:220-233,256-261,288-304,305-324 1g21 d1g21a_ A:233-246,269-274,301-317,317-343 1mio d1mioc_ C:220-233,256-261,288-304,305-324 1g21 d1g21c_ C:233-246,269-274,301-317,317-343 2min d2minc_ C:233-246,269-274,301-317,317-343 2min d2mina_ A:233-246,269-274,301-317,317-343 3min d3minc_ C:233-246,269-274,301-317,317-343 1g20 d1g20a_ A:233-246,269-274,301-317,317-343 1m1n d1m1na_ A:233-246,269-274,301-317,317-343 1n2c d1n2ca_ A:233-246,269-274,301-317,317-343 1n2c d1n2cc_ C:233-246,269-274,301-317,317-343 1fp4 d1fp4a_ A:233-246,269-274,301-317,317-343 1fp4 d1fp4c_ C:233-246,269-274,301-317,317-343 1qh8 d1qh8a_ A:231-244,267-272,299-315,315-341 1m34 d1m34a_ A:233-246,269-274,301-317,317-343 1g20 d1g20c_ C:233-246,269-274,301-317,317-343 1m1n d1m1nc_ C:233-246,269-274,301-317,317-343 2afi d2afii1 I:233-246,269-274,301-317,317-343 1m1n d1m1ng_ G:233-246,269-274,301-317,317-343 2afh d2afhc1 C:233-246,269-274,301-317,317-343 2afh d2afha1 A:233-246,269-274,301-317,317-343 1m1n d1m1ne_ E:233-246,269-274,301-317,317-343 2afi d2afik1 K:233-246,269-274,301-317,317-343 2afi d2afic1 C:233-246,269-274,301-317,317-343 2afk d2afkc1 C:233-246,269-274,301-317,317-343 1qh1 d1qh1a_ A:231-244,267-272,299-315,315-341 2afi d2afia1 A:233-246,269-274,301-317,317-343 2afk d2afka1 A:233-246,269-274,301-317,317-343 3min d3mina_ A:233-246,269-274,301-317,317-343 1m34 d1m34i_ I:233-246,269-274,301-317,317-343 1m34 d1m34c_ C:233-246,269-274,301-317,317-343 1qgu d1qgua_ A:231-244,267-272,299-315,315-341 1m1y d1m1yk_ K:233-246,269-274,301-317,317-343 1m1y d1m1ya_ A:233-246,269-274,301-317,317-343 1m1y d1m1yc_ C:233-246,269-274,301-317,317-343 1m34 d1m34k_ K:233-246,269-274,301-317,317-343 1qgu d1qguc_ C:231-244,267-272,299-315,315-341 1h1l d1h1la_ A:231-244,267-272,299-315,315-341 1m1y d1m1yi_ I:233-246,269-274,301-317,317-343 1qh8 d1qh8c_ C:231-244,267-272,299-315,315-341 1h1l d1h1lc_ C:231-244,267-272,299-315,315-341 1qh1 d1qh1c_ C:231-244,267-272,299-315,315-341 1l5h d1l5ha_ A:233-246,269-274,301-317,317-343 1pq4 d1pq4b_ B:55-67,99-105,183-203,205-234 1pq4 d1pq4a_ A:55-67,99-105,183-203,205-234 1xvl d1xvla1 A:61-73,105-110,158-178,180-210 1xvl d1xvlb1 B:61-73,105-110,158-178,180-210 2etv d2etva1 A:44-56,110-115,146-161,162-177 2etv d2etvb1 B:44-56,110-115,146-161,162-177 2chu d2chua1 A:57-68,130-136,141-158,159-181 2chu d2chua1 A:57-68,111-117,141-158,159-181 2chu d2chub1 B:57-68,111-116,141-158,159-181 1n4a d1n4ab_ B:5008-5019,5081-5086,5089-5104,5106-5131 1m1y d1m1yl_ L:233-248,288-294,321-337,341-359 1n4a d1n4aa_ A:8-19,81-86,89-104,106-131 2afi d2afil1 L:233-248,289-294,321-337,341-363 2min d2mind_ D:233-248,288-294,321-337,341-363 2afi d2afij1 J:233-248,289-294,321-337,341-363 2afi d2afib1 B:233-248,289-294,321-337,341-363 2afi d2afid1 D:233-248,289-294,321-337,341-363 1n2z d1n2zb_ B:30-41,80-85,111-127,128-151 1psz d1psza_ A:39-51,83-88,143-163,162-195 3min d3mind_ D:233-248,288-294,321-337,341-363 1fp4 d1fp4b_ B:233-248,288-294,321-337,341-363 1fp4 d1fp4d_ D:233-248,288-294,321-337,341-363 2afh d2afhd1 D:233-248,288-294,321-337,341-363 2afk d2afkd1 D:233-248,288-294,321-337,341-363 2afh d2afhb1 B:233-248,288-294,321-337,341-363 1n4a d1n4ab_ B:5008-5019,5058-5064,5089-5104,5106-5131 2afk d2afkb1 B:233-248,288-294,321-337,341-363 1toa d1toab_ B:40-52,108-113,137-157,159-189 1toa d1toaa_ A:40-52,108-113,137-157,159-189 1n4a d1n4aa_ A:8-19,58-64,89-104,106-131 1m34 d1m34b_ B:233-248,288-294,321-337,341-363 1g20 d1g20d_ D:233-248,288-294,321-337,341-363 1m1n d1m1nf_ F:233-248,288-294,321-337,341-363 1g20 d1g20b_ B:233-248,288-294,321-337,341-363 2min d2minb_ B:233-248,288-294,321-337,341-363 3min d3minb_ B:233-248,288-294,321-337,341-363 1m1y d1m1yb_ B:233-248,288-294,321-337,341-363 1k0f d1k0fa_ A:40-52,108-115,137-157,159-189 1m1n d1m1nh_ H:233-248,288-294,321-337,341-363 1m1n d1m1nb_ B:233-248,288-294,321-337,341-363 1n4d d1n4da_ A:8-19,58-63,89-104,106-131 1m1n d1m1nd_ D:233-248,288-294,321-337,341-363 1l5h d1l5hb_ B:233-248,288-294,321-337,341-363 1m34 d1m34d_ D:233-248,288-294,321-337,341-363 1m1y d1m1yd_ D:233-248,288-294,321-337,341-363 1m34 d1m34j_ J:233-248,288-294,321-337,341-363 1m1y d1m1yj_ J:233-248,288-294,321-337,341-363 1n2c d1n2cb_ B:233-248,288-294,321-337,341-365 1n2c d1n2cd_ D:233-248,288-294,321-337,341-365 1m34 d1m34l_ L:233-248,288-294,321-337,341-363 1h1l d1h1lb_ B:229-244,284-290,317-333,337-355 2min d2mind_ D:233-248,250-254,321-337,341-363 1mio d1miod_ D:180-195,236-242,269-285,289-307 1g21 d1g21b_ B:233-248,250-254,321-337,341-363 1g20 d1g20d_ D:233-248,250-254,321-337,341-363 1fp4 d1fp4b_ B:233-248,250-254,321-337,341-363 1fp4 d1fp4d_ D:233-248,250-254,321-337,341-363 2afi d2afil1 L:233-248,250-254,321-337,341-363 1n2z d1n2za_ A:30-41,80-85,111-127,128-153 1g20 d1g20b_ B:233-248,250-254,321-337,341-363 2afi d2afij1 J:233-248,250-254,321-337,341-363 1g21 d1g21d_ D:233-248,250-254,321-337,341-363 2afh d2afhb1 B:233-248,250-254,321-337,341-363 2afi d2afib1 B:233-248,250-254,321-337,341-363 2afi d2afid1 D:233-248,250-254,321-337,341-363 3min d3mind_ D:233-248,250-254,321-337,341-363 2afh d2afhd1 D:233-248,250-254,321-337,341-363 1m34 d1m34b_ B:233-248,250-254,321-337,341-363 2qi9 d2qi9f1 F:30-41,80-85,111-126,128-154 1m34 d1m34d_ D:233-248,250-254,321-337,341-363 1k7s d1k7sn_ N:42-53,118-123,129-146,147-173 1m1y d1m1yl_ L:233-248,250-254,321-337,341-359 2afk d2afkd1 D:233-248,250-254,321-337,341-363 1m34 d1m34j_ J:233-248,250-254,321-337,341-363 2min d2minb_ B:233-248,250-254,321-337,341-363 1m1n d1m1nf_ F:233-248,250-254,321-337,341-363 3min d3minb_ B:233-248,250-254,321-337,341-363 2afk d2afkb1 B:233-248,250-254,321-337,341-363 1n2c d1n2cb_ B:233-248,250-254,321-337,341-365 1m1n d1m1nh_ H:233-248,250-254,321-337,341-363 1n2c d1n2cd_ D:233-248,250-254,321-337,341-365 1m1n d1m1nb_ B:233-248,250-254,321-337,341-363 1m1n d1m1nd_ D:233-248,250-254,321-337,341-363 1m34 d1m34l_ L:233-248,250-254,321-337,341-363 1qh8 d1qh8d_ D:229-244,246-250,317-333,337-355 1n2z d1n2zb_ B:30-41,103-107,111-127,128-151 2chu d2chub1 B:57-68,130-135,141-158,159-181 1h1l d1h1lb_ B:229-244,246-250,317-333,337-355 1n4d d1n4db_ B:1008-1019,1058-1063,1089-1105,1106-1132 1h1l d1h1ld_ D:229-244,246-250,317-333,337-355 1qgu d1qgud_ D:229-244,246-250,317-333,337-355 2phz d2phza1 A:43-54,98-104,126-142,143-166 1qh1 d1qh1d_ D:229-244,246-250,317-333,337-355 1qh8 d1qh8b_ B:229-244,246-250,317-333,337-355 1esz d1esza_ A:42-53,118-123,129-146,147-173 1efd d1efdn_ N:42-53,118-123,129-146,147-173 1k2v d1k2vn_ N:42-53,118-123,129-146,147-173 1m1y d1m1yb_ B:233-248,250-254,321-337,341-363 1qgu d1qgub_ B:229-244,246-250,317-333,337-355 1qh1 d1qh1b_ B:229-244,246-250,317-333,337-355 1m1y d1m1yd_ D:233-248,250-254,321-337,341-363 1m1y d1m1yj_ J:233-248,250-254,321-337,341-363 1l5h d1l5hb_ B:233-248,250-254,321-337,341-363 1mio d1miod_ D:180-195,197-201,269-285,289-307 1n4d d1n4da_ A:8-19,81-85,89-104,106-131 1g21 d1g21b_ B:233-248,288-293,321-337,341-363 1g21 d1g21d_ D:233-248,288-293,321-337,341-363 1k7s d1k7sn_ N:42-53,98-104,129-146,147-173 2phz d2phza1 A:43-54,119-124,126-142,143-166 1qh8 d1qh8d_ D:229-244,284-289,317-333,337-355 2qi9 d2qi9f1 F:30-41,103-107,111-126,128-154 1pq4 d1pq4a_ A:55-67,123-129,183-203,205-234 1mio d1miob_ B:180-195,197-201,267-285,289-311 1qgu d1qgud_ D:229-244,284-289,317-333,337-355 1qh1 d1qh1b_ B:229-244,284-289,317-333,337-355 1efd d1efdn_ N:42-53,98-104,129-146,147-173 1k2v d1k2vn_ N:42-53,98-104,129-146,147-173 1pq4 d1pq4b_ B:55-67,123-129,183-203,205-234 1qh1 d1qh1d_ D:229-244,284-289,317-333,337-355 1xvl d1xvla1 A:61-73,129-133,158-178,180-210 1h1l d1h1ld_ D:229-244,284-289,317-333,337-355 1esz d1esza_ A:42-53,98-104,129-146,147-173 1n2z d1n2za_ A:30-41,103-107,111-127,128-153 1n4d d1n4db_ B:1008-1019,1081-1085,1089-1105,1106-1132 1mio d1miob_ B:180-195,235-242,267-285,289-311 1qh8 d1qh8b_ B:229-244,285-289,317-333,337-355 1xvl d1xvlb1 B:61-73,129-133,158-178,180-210 1qgu d1qgub_ B:229-244,285-289,317-333,337-355 1psz d1psza_ A:39-51,114-118,143-163,162-195 20. c.72.1 Ribokinase-like has extra strand located between strands 2 and 3 ! Ribokinase-like core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest ! potential superfamily: members of this fold have similar functions but different ATP-binding sites 2f02 d2f02b1 B:37-50,129-135,252-268,270-289 1vk4 d1vk4a_ A:25-38,109-114,231-248,250-269 2f02 d2f02a1 A:37-50,129-135,252-268,270-289 2awd d2awda1 A:37-50,129-135,252-268,270-289 1v1a d1v1ab_ B:34-47,127-133,246-264,266-285 1v1b d1v1bb_ B:34-47,127-133,246-264,266-285 1v1b d1v1bc_ C:34-47,127-133,246-264,266-285 1v1b d1v1bd_ D:34-47,127-133,246-264,266-285 2afb d2afbb1 B:33-46,127-135,277-293,295-314 1v19 d1v19a_ A:34-47,127-133,245-264,266-285 1v19 d1v19b_ B:34-47,127-133,246-264,266-285 2afb d2afba1 A:33-46,128-135,277-293,295-314 1vi9 d1vi9b_ B:16-30,31-37,221-237,239-262 1v1s d1v1se_ E:34-47,127-133,246-264,266-285 1v1s d1v1sd_ D:34-47,127-133,246-264,266-285 1v1s d1v1sb_ B:34-47,127-133,246-264,266-285 1v1s d1v1sc_ C:34-47,127-133,246-264,266-285 1v1s d1v1sf_ F:34-47,127-133,246-264,266-285 1v1s d1v1sa_ A:34-47,127-133,246-264,266-285 1vi9 d1vi9d_ D:16-30,77-83,221-237,239-262 1td2 d1td2b_ B:16-30,77-83,221-237,239-262 2i6a d2i6ac1 C:64-78,163-170,294-313,315-331 1td2 d1td2a_ A:16-30,77-83,221-237,239-262 1vi9 d1vi9b_ B:16-30,77-83,221-237,239-262 2i6a d2i6ab1 B:64-78,163-170,294-313,315-331 1ub0 d1ub0a_ A:16-29,30-37,207-223,225-244 1jxh d1jxhb_ B:18-31,32-39,210-223,228-247 1jxh d1jxha_ A:18-31,32-40,210-223,228-247 1vi9 d1vi9d_ D:16-30,31-39,221-237,239-262 1vk4 d1vk4a_ A:25-38,40-46,231-248,250-269 1vi9 d1vi9c_ C:16-30,31-39,221-237,239-262 1vi9 d1vi9a_ A:16-30,31-39,221-237,239-262 1td2 d1td2a_ A:16-30,31-39,221-237,239-262 1td2 d1td2b_ B:16-30,31-39,221-237,239-262 1wye d1wyeb1 B:34-47,48-58,250-269,271-289 1kyh d1kyha_ A:39-54,56-62,211-230,231-255 1wye d1wyed1 D:34-47,48-58,250-269,271-290 2dcn d2dcnj1 J:34-47,48-57,251-269,271-290 2dcn d2dcnd1 D:34-47,48-57,251-269,271-290 1jxi d1jxia_ A:18-31,32-39,210-226,228-251 1jxi d1jxib_ B:18-31,32-39,210-226,228-251 2ax3 d2ax3a1 A:244-259,261-269,426-444,446-465 1wye d1wyee1 E:34-47,48-58,251-269,271-289 2dcn d2dcnh1 H:34-47,48-58,251-269,271-289 2dcn d2dcnc1 C:34-47,48-58,251-269,271-290 2dcn d2dcnb1 B:34-47,48-58,251-269,271-289 1wye d1wyec1 C:34-47,48-58,251-269,271-290 1wye d1wyea1 A:34-47,48-58,251-269,271-290 1wye d1wyef1 F:34-47,48-58,251-269,271-289 2dcn d2dcni1 I:34-47,48-58,251-269,271-290 2dcn d2dcnf1 F:34-47,48-58,251-269,271-290 2dcn d2dcng1 G:34-47,48-58,251-269,271-290 2dcn d2dcnl1 L:34-47,48-58,251-269,271-290 2dcn d2dcne1 E:34-47,48-58,251-269,271-290 2dcn d2dcna1 A:34-47,48-58,251-269,271-290 2dcn d2dcnk1 K:34-47,48-58,251-269,271-290 1rfu d1rfud_ D:18-32,33-41,230-249,251-279 1rfu d1rfuf_ F:18-32,33-41,230-249,251-279 1rfu d1rfua_ A:18-32,33-41,230-249,251-279 1rfu d1rfuh_ H:18-32,33-41,230-249,251-279 1rfu d1rfub_ B:18-32,33-41,230-249,251-279 1rfu d1rfuc_ C:18-32,33-41,230-249,251-279 1rfu d1rfue_ E:18-32,33-41,230-249,251-279 1rfu d1rfug_ G:19-32,33-41,230-249,251-279 1ekk d1ekkb_ B:28-40,40-45,195-212,213-237 1rft d1rfta_ A:18-32,33-41,230-249,251-279 2afb d2afba1 A:33-46,47-56,277-293,295-314 1lhr d1lhra_ A:18-32,33-39,232-249,251-279 1yhj d1yhja1 A:18-32,34-39,232-249,251-279 1rkd d1rkda_ A:42-55,57-66,252-268,270-289 1rk2 d1rk2b_ B:42-55,57-66,252-268,270-289 1rks d1rksa_ A:42-55,57-66,252-268,270-289 2afb d2afbb1 B:33-46,47-56,277-293,295-314 1rk2 d1rk2c_ C:42-55,57-66,252-268,270-289 1rk2 d1rk2d_ D:42-55,57-66,252-268,270-289 1rk2 d1rk2a_ A:42-55,57-66,252-268,270-289 1gqt d1gqtb_ B:42-55,57-66,252-268,270-289 1ygk d1ygka1 A:18-32,33-41,232-249,251-279 1gqt d1gqta_ A:42-55,57-66,252-268,270-289 1gqt d1gqtc_ C:42-55,57-66,252-268,270-289 1ygj d1ygja1 A:18-32,33-41,232-249,251-279 1lhp d1lhpb_ B:18-32,33-41,232-249,251-279 1lhr d1lhrb_ B:18-32,33-41,232-249,251-279 1rfv d1rfvb_ B:18-32,33-41,232-249,251-279 1rfv d1rfva_ A:18-32,33-41,232-249,251-279 1lhp d1lhpa_ A:18-32,33-41,232-249,251-279 1vm7 d1vm7a_ A:40-54,56-65,243-259,261-280 1vm7 d1vm7b_ B:40-54,56-65,243-259,261-280 29. c.80.1 SIS domain SIS domain 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 21345 1c7r d1c7ra_ A:80-95,106-112,208-218,384-407 1wiw d1wiwa_ A:44-55,63-71,107-123,250-274 1jxa d1jxab1 B:300-319,340-349,401-424,426-440 1jxa d1jxaa1 A:300-319,340-349,401-424,426-440 1c7q d1c7qa_ A:80-95,106-112,208-218,384-407 1moq d1moqa_ A:300-319,340-349,401-424,426-440 1dqr d1dqra_ A:156-171,178-184,280-288,288-309 2vf4 d2vf4x1 X:300-319,340-349,401-424,426-451 2pgi d2pgia_ A:80-95,106-112,208-218,384-407 1b0z d1b0za_ A:80-95,106-112,208-218,384-407 1dqr d1dqrb_ B:156-171,178-184,280-288,288-309 2j6h d2j6ha1 A:300-319,340-349,401-424,426-451 1iat d1iata_ A:156-171,178-184,280-288,288-309 1iri d1irib_ B:157-172,179-185,281-289,289-310 1hox d1hoxa_ A:156-171,178-184,280-288,288-309 1hm5 d1hm5a_ A:156-171,178-184,280-288,288-309 1hm5 d1hm5b_ B:156-171,178-184,280-288,288-309 2j6h d2j6hb1 B:300-319,340-349,401-424,426-440 1g98 d1g98b_ B:156-171,178-184,280-288,288-309 1nuh d1nuha_ A:156-171,178-184,280-288,288-309 1xtb d1xtbb1 B:1156-1171,1178-1184,1280-1288,1288-1309 1hox d1hoxb_ B:156-171,178-184,280-288,288-309 1iri d1iric_ C:157-172,179-185,281-289,289-310 2bpl d2bplb1 B:300-319,340-349,401-424,426-440 1koj d1koja_ A:156-171,178-184,280-288,288-309 1g98 d1g98a_ A:156-171,178-184,280-288,288-309 1mos d1mosa_ A:300-319,340-349,401-424,426-440 1u0e d1u0ea_ A:156-171,178-184,280-288,288-309 1u0e d1u0eb_ B:156-171,178-184,280-288,288-309 1q50 d1q50a_ A:204-219,226-232,333-341,341-362 1xtb d1xtba1 A:156-171,178-184,280-288,288-309 1n8t d1n8tb_ B:156-171,178-184,280-288,288-309 1nuh d1nuha_ A:156-171,202-210,270-278,482-505 1iri d1iric_ C:157-172,203-211,271-279,483-506 1koj d1kojb_ B:156-171,178-184,280-288,288-309 1u0g d1u0gb_ B:156-171,178-184,280-288,288-309 1wiw d1wiwb_ B:44-55,61-70,107-123,250-274 1jiq d1jiqd_ D:157-172,179-185,281-289,289-310 1u0g d1u0ga_ A:156-171,178-184,280-288,288-309 1u0f d1u0fb_ B:156-171,178-184,280-288,288-309 1jlh d1jlha_ A:156-171,178-184,280-288,288-309 1jiq d1jiqb_ B:157-172,179-185,281-289,289-310 1iri d1iria_ A:157-172,179-185,281-289,289-310 1u0f d1u0fa_ A:156-171,178-184,280-288,288-309 1jlh d1jlhb_ B:156-171,178-184,280-288,288-309 1u0g d1u0ga_ A:156-171,202-210,270-278,482-505 1jiq d1jiqc_ C:157-172,179-185,281-289,289-310 1jlh d1jlhd_ D:156-171,178-184,280-288,288-309 1t10 d1t10a_ A:204-219,226-232,333-341,341-362 1jxa d1jxac1 C:300-319,340-349,401-424,426-440 1u0e d1u0ea_ A:156-171,202-210,270-278,482-505 2vf5 d2vf5x1 X:300-319,340-349,401-424,426-440 1jiq d1jiqa_ A:157-172,179-185,281-289,289-310 1jlh d1jlhc_ C:156-171,178-184,280-288,288-309 1iri d1irib_ B:157-172,203-211,271-279,483-506 1n8t d1n8ta_ A:156-171,178-184,280-288,288-309 1iri d1irid_ D:157-172,179-185,281-289,289-310 1mor d1mora_ A:300-319,340-349,401-424,426-440 1iri d1irid_ D:157-172,203-211,271-279,483-506 1gzd d1gzda_ A:156-171,178-184,280-288,288-309 1u0g d1u0gb_ B:156-171,202-210,270-278,482-505 1u0f d1u0fa_ A:156-171,202-210,270-278,482-505 1iat d1iata_ A:156-171,202-210,270-278,482-505 1hox d1hoxa_ A:156-171,202-210,270-278,482-505 1iri d1iria_ A:157-172,203-211,271-279,483-506 1dqr d1dqrb_ B:156-171,202-210,270-278,482-505 1hox d1hoxb_ B:156-171,202-210,270-278,482-505 1g98 d1g98b_ B:156-171,202-210,270-278,482-505 1gzv d1gzva_ A:156-171,178-184,280-288,288-309 1dqr d1dqra_ A:156-171,202-210,270-278,482-505 1xtb d1xtba1 A:156-171,202-210,270-278,482-505 1g98 d1g98a_ A:156-171,202-210,270-278,482-505 1koj d1kojb_ B:156-171,202-210,270-278,482-505 1xtb d1xtbb1 B:1156-1171,1202-1210,1270-1278,1482-1505 1n8t d1n8ta_ A:156-171,202-210,270-278,482-505 1koj d1koja_ A:156-171,202-210,270-278,482-505 1n8t d1n8tb_ B:156-171,202-210,270-278,482-505 1hm5 d1hm5b_ B:156-171,202-210,270-278,482-505 1jiq d1jiqc_ C:157-172,203-211,271-279,483-506 1u0e d1u0eb_ B:156-171,202-210,270-278,482-505 1gzd d1gzda_ A:156-171,202-210,270-278,482-505 1jiq d1jiqa_ A:157-172,203-211,271-279,483-506 1jiq d1jiqd_ D:157-172,203-211,271-279,483-506 1c7r d1c7ra_ A:80-95,106-112,208-218,220-237 1jiq d1jiqb_ B:157-172,203-211,271-279,483-506 1nuh d1nuha_ A:156-171,202-210,270-278,344-361 1b0z d1b0za_ A:80-95,106-112,208-218,220-237 2pgi d2pgia_ A:80-95,106-112,208-218,220-237 1c7q d1c7qa_ A:80-95,106-112,208-218,220-237 1gzv d1gzva_ A:156-171,202-210,270-278,482-505 1t10 d1t10a_ A:204-219,250-259,323-331,533-556 1n8t d1n8ta_ A:156-171,202-210,270-278,344-361 2j6h d2j6ha1 A:300-319,321-326,401-424,426-451 1n8t d1n8tb_ B:156-171,202-210,270-278,344-361 1wiw d1wiwa_ A:44-55,87-96,107-123,172-188 2bpl d2bpla1 A:300-311,340-349,401-424,472-491 1wiw d1wiwa_ A:44-55,87-96,107-123,250-274 1jxa d1jxac1 C:300-319,321-326,401-424,426-440 1hm5 d1hm5b_ B:156-171,202-210,270-278,344-361 2vf4 d2vf4x1 X:300-319,320-326,401-424,426-451 1q50 d1q50a_ A:204-219,250-258,323-331,533-556 1wiw d1wiwb_ B:44-55,87-96,107-123,172-188 1jiq d1jiqd_ D:157-172,203-211,271-279,345-362 1jiq d1jiqa_ A:157-172,203-211,271-279,345-362 1jiq d1jiqc_ C:157-172,203-211,271-279,345-362 1jiq d1jiqb_ B:157-172,203-211,271-279,345-362 2bpl d2bplc1 C:300-311,340-349,401-424,472-491 1wiw d1wiwb_ B:44-55,87-96,107-123,250-274 1t10 d1t10a_ A:204-219,250-259,323-331,397-414 1q50 d1q50a_ A:204-219,250-258,323-331,397-414 2bpl d2bpla1 A:300-311,367-376,401-424,472-491 2bpl d2bplc1 C:300-311,368-376,401-424,472-491 1jxa d1jxab1 B:300-319,340-349,401-424,472-491 2vf4 d2vf4x1 X:300-319,340-349,401-424,472-491 1tzb d1tzbb_ B:45-63,81-88,137-154,262-285 1moq d1moqa_ A:300-319,340-349,401-424,472-491 1mos d1mosa_ A:300-319,340-349,401-424,472-491 1tzb d1tzba_ A:45-63,81-88,137-154,262-285 1jxa d1jxaa1 A:300-319,340-349,401-424,472-491 2vf5 d2vf5x1 X:300-319,340-349,401-424,472-491 2bpl d2bplb1 B:300-319,340-349,401-424,472-491 1jxa d1jxac1 C:300-319,340-349,401-424,472-491 1tzc d1tzcb_ B:45-63,81-91,137-154,262-285 1tzc d1tzca_ A:45-63,81-91,137-154,262-285 2j6h d2j6ha1 A:300-319,340-349,401-424,472-491 1x9i d1x9ib_ B:45-63,81-91,137-154,262-285 1x9i d1x9ia_ A:45-63,81-91,137-154,262-285 1x9h d1x9ha_ A:45-63,81-91,137-154,262-285 1mor d1mora_ A:300-319,340-349,401-424,472-491 1x9h d1x9hb_ B:45-63,81-91,137-154,262-285 2j6h d2j6hb1 B:300-319,340-349,401-424,472-491 1j5x d1j5xa_ A:48-67,89-98,148-168,208-227 1j5x d1j5xa_ A:48-67,115-124,148-168,208-227 2vf4 d2vf4x1 X:300-319,368-376,401-424,472-491 1nuh d1nuha_ A:156-171,241-247,270-278,482-505 1moq d1moqa_ A:300-319,367-376,401-424,472-491 1iri d1iric_ C:157-172,243-248,271-279,483-506 1iri d1irid_ D:157-172,243-248,271-279,483-506 1nuh d1nuha_ A:156-171,241-247,270-278,344-361 1jxa d1jxab1 B:300-319,368-376,401-424,472-491 1iri d1irib_ B:157-172,242-248,271-279,483-506 1mor d1mora_ A:300-319,368-376,401-424,472-491 1mos d1mosa_ A:300-319,367-376,401-424,472-491 1x9i d1x9ib_ B:45-63,107-115,137-154,262-285 2vf5 d2vf5x1 X:300-319,367-376,401-424,472-491 1tzc d1tzcb_ B:45-63,108-115,137-154,262-285 1iri d1iric_ C:157-172,243-248,271-279,345-362 1u0g d1u0ga_ A:156-171,241-247,270-278,482-505 1hox d1hoxa_ A:156-171,241-247,270-278,482-505 1tzb d1tzbb_ B:45-63,108-114,137-154,262-285 1hox d1hoxb_ B:156-171,241-247,270-278,482-505 1iri d1irid_ D:157-172,243-248,271-279,345-362 1dqr d1dqra_ A:156-171,241-247,270-278,482-505 1xtb d1xtbb1 B:1156-1171,1242-1247,1270-1278,1482-1505 1iri d1irib_ B:157-172,242-248,271-279,345-362 2j6h d2j6ha1 A:300-319,367-376,401-424,472-491 1u0g d1u0ga_ A:156-171,241-247,270-278,344-361 1tzc d1tzca_ A:45-63,108-115,137-154,262-285 1iat d1iata_ A:156-171,241-247,270-278,482-505 1iri d1iria_ A:157-172,242-248,271-279,483-506 1x9i d1x9ia_ A:45-63,108-115,137-154,262-285 2bpl d2bplb1 B:300-319,368-376,401-424,472-491 2j6h d2j6hb1 B:300-319,367-376,401-424,472-491 1g98 d1g98b_ B:156-171,241-247,270-278,482-505 1dqr d1dqra_ A:156-171,241-247,270-278,344-361 1dqr d1dqrb_ B:156-171,241-247,270-278,482-505 1tzb d1tzba_ A:45-63,108-114,137-154,262-285 1xtb d1xtba1 A:156-171,241-247,270-278,482-505 1g98 d1g98a_ A:156-171,241-247,270-278,482-505 1koj d1koja_ A:156-171,241-247,270-278,482-505 1koj d1kojb_ B:156-171,241-247,270-278,482-505 1u0g d1u0gb_ B:156-171,241-247,270-278,482-505 1u0e d1u0ea_ A:156-171,241-247,270-278,482-505 1gzd d1gzda_ A:156-171,242-247,270-278,482-505 1x9h d1x9ha_ A:45-63,108-115,137-154,262-285 1x9h d1x9hb_ B:45-63,108-115,137-154,262-285 1iri d1iria_ A:157-172,242-248,271-279,345-362 1u0f d1u0fa_ A:156-171,241-247,270-278,482-505 1jxa d1jxaa1 A:300-319,367-376,401-424,472-491 1dqr d1dqrb_ B:156-171,241-247,270-278,344-361 1moq d1moqa_ A:300-319,340-349,401-424,568-592 1koj d1kojb_ B:156-171,241-247,270-278,344-361 1xtb d1xtba1 A:156-171,241-247,270-278,344-361 1koj d1koja_ A:156-171,241-247,270-278,344-361 1xtb d1xtbb1 B:1156-1171,1242-1247,1270-1278,1344-1361 1jxa d1jxac1 C:300-319,367-376,401-424,472-491 1hox d1hoxb_ B:156-171,241-247,270-278,344-361 1g98 d1g98a_ A:156-171,241-247,270-278,344-361 1g98 d1g98b_ B:156-171,241-247,270-278,344-361 1u0g d1u0gb_ B:156-171,241-247,270-278,344-361 1iat d1iata_ A:156-171,241-247,270-278,344-361 2vf4 d2vf4x1 X:300-319,340-349,401-424,568-592 1n8t d1n8ta_ A:156-171,242-247,270-278,482-505 1gzd d1gzda_ A:156-171,242-247,270-278,344-361 1u0f d1u0fa_ A:156-171,241-247,270-278,344-361 1u0e d1u0ea_ A:156-171,241-247,270-278,344-361 1jxa d1jxaa1 A:300-319,340-349,401-424,568-592 1j5x d1j5xa_ A:48-67,89-98,148-168,292-315 1hox d1hoxa_ A:156-171,241-247,270-278,344-361 1mos d1mosa_ A:300-319,340-349,401-424,568-592 2bpl d2bplb1 B:300-319,340-349,401-424,568-592 2vf5 d2vf5x1 X:300-319,340-349,401-424,568-592 1n8t d1n8tb_ B:156-171,242-247,270-278,482-505 2j6h d2j6hb1 B:300-319,340-349,401-424,568-592 1mor d1mora_ A:300-319,340-349,401-424,568-592 1n8t d1n8ta_ A:156-171,242-247,270-278,344-361 1jiq d1jiqc_ C:157-172,242-248,271-279,483-506 2j6h d2j6ha1 A:300-319,340-349,401-424,568-592 1hm5 d1hm5b_ B:156-171,242-247,270-278,482-505 1jiq d1jiqa_ A:157-172,243-248,271-279,483-506 1jiq d1jiqb_ B:157-172,243-248,271-279,483-506 1jiq d1jiqd_ D:157-172,243-248,271-279,483-506 1n8t d1n8tb_ B:156-171,242-247,270-278,344-361 1u0e d1u0eb_ B:156-171,241-247,270-278,482-505 1jiq d1jiqc_ C:157-172,242-248,271-279,345-362 1hm5 d1hm5b_ B:156-171,242-247,270-278,344-361 1jiq d1jiqd_ D:157-172,243-248,271-279,345-362 1u0e d1u0eb_ B:156-171,241-247,270-278,344-361 1jiq d1jiqa_ A:157-172,243-248,271-279,345-362 1jiq d1jiqb_ B:157-172,243-248,271-279,345-362 1j5x d1j5xa_ A:48-67,115-124,148-168,292-315 2bpl d2bpla1 A:300-311,340-349,401-424,568-592 2bpl d2bplc1 C:300-311,340-349,401-424,568-592 1moq d1moqa_ A:300-319,367-376,401-424,568-592 2vf4 d2vf4x1 X:300-319,368-376,401-424,568-592 1mor d1mora_ A:300-319,368-376,401-424,568-592 2bpl d2bpla1 A:300-311,367-376,401-424,568-592 2j6h d2j6hb1 B:300-319,367-376,401-424,568-592 2vf5 d2vf5x1 X:300-319,367-376,401-424,568-592 1mos d1mosa_ A:300-319,367-376,401-424,568-592 2j6h d2j6ha1 A:300-319,367-376,401-424,568-592 2bpl d2bplc1 C:300-311,368-376,401-424,568-592 2bpl d2bplb1 B:300-319,368-376,401-424,568-592 1jxa d1jxac1 C:300-319,340-349,401-424,571-592 1jxa d1jxaa1 A:300-319,367-376,401-424,568-592 1jxa d1jxab1 B:300-319,340-349,401-424,571-592 1jxa d1jxac1 C:300-319,367-376,401-424,571-592 1jxa d1jxab1 B:300-319,368-376,401-424,571-592 32. c.23.8 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Flavodoxin-like 3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345 1u11 d1u11a_ A:33-48,78-85,134-156,155-173 2fw1 d2fw1a1 A:33-48,78-85,134-156,155-173 2fwj d2fwja1 A:33-48,78-85,134-156,155-173 2fwj d2fwjb1 B:33-48,78-85,134-156,155-173 1u11 d1u11b_ B:33-48,78-85,134-156,155-173 2fw1 d2fw1b1 B:33-48,78-85,134-156,155-173 1xmp d1xmpg_ G:14-29,31-37,115-137,136-156 1xmp d1xmpa_ A:14-29,59-66,115-137,136-156 1xmp d1xmpg_ G:14-29,59-66,115-137,136-156 1d7a d1d7ab_ B:19-34,64-71,121-142,141-163 1d7a d1d7ac_ C:19-34,64-71,121-142,141-163 1xmp d1xmpe_ E:14-29,59-66,115-137,136-156 1xmp d1xmpe_ E:14-29,31-37,115-137,136-156 1xmp d1xmpa_ A:14-29,31-37,115-137,136-156 1d7a d1d7am_ M:19-34,64-71,120-142,141-163 1d7a d1d7an_ N:19-34,64-71,120-142,141-163 1d7a d1d7al_ L:19-34,64-71,120-142,141-163 1qcz d1qcza_ A:19-34,64-71,120-142,141-163 1d7a d1d7ao_ O:19-34,64-71,120-142,141-163 2fwj d2fwja1 A:33-48,50-56,134-156,155-173 1d7a d1d7ad_ D:19-34,64-71,120-142,141-163 1d7a d1d7aa_ A:19-34,64-71,120-142,141-163 1xmp d1xmpb_ B:14-29,59-66,115-137,136-157 1u11 d1u11a_ A:33-48,50-56,134-156,155-173 2fw1 d2fw1a1 A:33-48,50-56,134-156,155-173 2ate d2atea1 A:19-34,64-71,120-142,141-163 1xmp d1xmpd_ D:18-29,59-66,115-137,136-156 1xmp d1xmpb_ B:14-29,31-37,115-137,136-157 1xmp d1xmpc_ C:18-29,59-66,115-137,136-156 2fwj d2fwjb1 B:33-48,50-56,134-156,155-173 1xmp d1xmpf_ F:18-29,59-66,115-137,136-157 2fw1 d2fw1b1 B:33-48,50-56,134-156,155-173 1u11 d1u11b_ B:33-48,50-56,134-156,155-173 1xmp d1xmpd_ D:18-29,31-37,115-137,136-156 1xmp d1xmpc_ C:18-29,31-37,115-137,136-156 1xmp d1xmpf_ F:18-29,31-37,115-137,136-157 1xmp d1xmph_ H:18-29,59-66,115-137,136-159 1xmp d1xmph_ H:18-29,31-37,115-137,136-159 1o4v d1o4va_ A:13-28,58-65,117-134,133-162 1o4v d1o4va_ A:13-28,30-36,117-134,133-162 40. c.56.8 Cgl1923-like Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops 2p90 d2p90a1 A:40-53,133-143,210-226,230-253 2p90 d2p90c1 C:40-53,131-143,210-226,230-253 2p90 d2p90b1 B:40-53,131-143,210-226,230-253 2p90 d2p90a1 A:40-53,193-202,210-226,230-253 2p90 d2p90c1 C:40-53,193-202,210-226,230-253 2p90 d2p90b1 B:40-53,193-202,210-226,230-253 42. d.364.1 PA1123-like PA1123-like irregular array of short helices and two three-stranded beta-sheets 2hg6 d2hg6a1 A:5-16,53-57,65-76,84-94 55. c.127.1 F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) the sheet topology is similar to those of the Periplasmic binding protein-like I domains ! F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213456 1u6j d1u6jd1 D:133-152,180-184,184-192,196-225 1u6j d1u6jj1 J:133-152,180-184,184-192,196-225 1u6i d1u6id1 D:133-152,180-184,184-192,196-225 1u6i d1u6ij1 J:133-152,180-184,184-192,196-225 1u6j d1u6jf1 F:133-152,180-184,184-192,196-225 1u6i d1u6if1 F:133-152,180-184,184-192,196-225 1qv9 d1qv9b_ B:133-152,180-184,184-192,196-225 1u6k d1u6kb1 B:133-152,180-184,184-192,196-225 1u6j d1u6je1 E:133-152,180-184,184-191,196-225 1u6j d1u6jk1 K:133-152,180-184,184-191,196-225 1qv9 d1qv9c_ C:133-152,180-184,184-192,196-225 1u6k d1u6kc1 C:133-152,180-184,184-192,196-225 1u6i d1u6ie1 E:133-152,180-184,184-191,196-225 1u6i d1u6ik1 K:133-152,180-184,184-191,196-225 1u6j d1u6jg1 G:133-152,180-184,184-191,196-225 1u6j d1u6ja1 A:133-152,180-184,184-191,196-225 1u6i d1u6ii1 I:133-152,179-184,184-192,196-225 1u6i d1u6ic1 C:133-152,179-184,184-192,196-225 1u6i d1u6ig1 G:133-152,180-184,184-191,196-225 1u6i d1u6ia1 A:133-152,180-184,184-191,196-225 1u6i d1u6ib1 B:133-152,180-184,184-191,196-225 1u6j d1u6jb1 B:133-152,180-184,184-191,196-225 1u6i d1u6ih1 H:133-152,180-184,184-191,196-225 1u6j d1u6jh1 H:133-152,180-184,184-191,196-225 1u6j d1u6ji1 I:133-152,179-184,184-192,196-225 1u6j d1u6jc1 C:133-152,179-184,184-192,196-225 1u6i d1u6il1 L:133-152,180-184,184-192,196-225 1u6k d1u6ka1 A:133-152,180-184,184-191,196-225 1qv9 d1qv9a_ A:133-152,180-184,184-191,196-225 56. f.33.1 Calcium ATPase, transmembrane domain M Calcium ATPase, transmembrane domain M core: multihelical; consists of three transmembrane regions of 2, 2 and 6 helices, separated by cytoplasmic domains 1iwo d1iwoa4 A:308-330,330-334,335-345,739-782 1iwo d1iwob4 B:308-330,330-334,335-345,739-782 2zbg d2zbga4 A:308-330,330-334,335-345,739-782 1wpg d1wpgc4 C:308-330,330-334,335-345,739-782 1wpg d1wpgb4 B:308-330,330-334,335-345,739-782 1xp5 d1xp5a4 A:308-330,330-334,335-345,739-782 2zbf d2zbfa4 A:308-330,330-334,335-345,739-782 1wpg d1wpga4 A:308-330,330-334,335-345,739-782 1wpg d1wpgd4 D:308-330,330-334,335-345,739-782 3b9b d3b9ba4 A:308-330,330-334,335-345,739-782 3b9r d3b9ra4 A:308-330,330-334,335-345,739-782 3b9r d3b9rb4 B:308-330,330-334,335-345,739-782 2zbe d2zbeb4 B:308-330,330-334,335-345,739-782 2zbe d2zbea4 A:308-330,330-334,335-345,739-782