3. d.383.1 PG1388-like PG1388-like consists of 2 alpha+beta subdomains, each having a meander beta-sheet; d1: alpha(2)-beta(7); d2: alpha(2)-beta(2)-alpha(2)-beta(2) 2p3p d2p3pb1 B:67-76,85-97,103-110,114-122 2p3p d2p3pa1 A:67-76,85-97,103-111,113-122 2p3p d2p3pb1 B:67-76,85-97,123-130,132-142 6. c.73.1 Carbamate kinase-like the sheet topology is similar to those of undecaprenyl diphosphate synthase and the N-terminal domain of phosphoglycerate kinase ! Carbamate kinase-like 3 layers: a/b/a; mixed (mainly parallel) beta-sheet of 8 strands, order 34215786; strand 8 is antiparallel to the rest 2bty d2btyc1 C:217-228,231-248,250-256,274-278 2ap9 d2ap9c1 C:235-246,247-264,266-273,290-294 2bty d2btya1 A:217-228,231-248,250-257,274-278 2bty d2btyb1 B:217-228,231-248,250-256,274-278 2ap9 d2ap9a1 A:235-246,247-264,266-273,290-294 2buf d2buff1 F:235-246,249-266,268-274,292-296 2buf d2bufa1 A:235-246,249-266,268-274,292-297 1e19 d1e19a_ A:256-267,270-288,290-296,309-313 1e19 d1e19b_ B:256-267,270-288,290-296,309-313 2ap9 d2ap9b1 B:235-246,247-264,266-273,290-295 2ap9 d2ap9e1 E:235-246,247-264,266-273,290-294 2ap9 d2ap9d1 D:235-243,247-264,266-272,290-294 2ap9 d2ap9f1 F:235-243,247-264,266-273,290-295 2buf d2bufd1 D:235-246,249-266,268-274,292-296 2bri d2brib1 B:163-172,185-196,198-203,220-224 2brx d2brxb1 B:163-173,185-196,198-203,220-224 2bri d2bria1 A:163-172,185-196,198-203,220-224 2brx d2brxa1 A:163-173,185-196,198-203,220-224 2bmu d2bmua1 A:163-172,185-196,198-203,220-224 2bmu d2bmub1 B:163-172,185-196,198-203,220-224 1b7b d1b7bb_ B:250-261,264-283,285-291,302-306 1b7b d1b7ba_ A:250-261,264-283,285-291,302-306 2buf d2bufh1 H:235-246,249-266,268-275,292-296 1b7b d1b7bd_ D:250-261,264-283,285-291,302-306 2ij9 d2ij9a1 A:159-169,181-192,194-199,215-219 1gs5 d1gs5a_ A:197-208,211-229,231-236,253-257 1b7b d1b7bc_ C:250-261,264-283,285-290,302-306 2buf d2bufj1 J:235-246,249-266,268-274,292-296 1gsj d1gsja_ A:197-208,211-229,231-236,253-257 2ij9 d2ij9b1 B:159-170,181-192,194-199,215-219 2buf d2bufg1 G:235-246,249-266,268-274,292-296 2buf d2bufi1 I:235-246,249-267,268-274,292-296 2hmf d2hmfb1 B:253-264,269-280,282-287,295-299 2hmf d2hmfc1 C:253-264,269-280,282-287,295-299 2hmf d2hmfa1 A:253-264,269-280,282-287,295-299 2buf d2bufc1 C:235-246,249-266,268-274,292-296 2hmf d2hmfd1 D:253-264,269-280,282-287,295-299 2j0x d2j0xa1 A:244-252,260-271,272-278,286-290 2j0x d2j0xb1 B:244-252,260-271,272-278,286-290 1z9d d1z9dc1 C:187-195,200-211,212-219,235-239 1z9d d1z9db1 B:187-195,200-211,212-219,235-239 2buf d2bufk1 K:235-246,249-266,268-274,292-296 1z9d d1z9da1 A:187-195,200-211,212-219,235-239 2buf d2bufl1 L:235-246,249-266,268-274,292-296 1oha d1ohaa_ A:197-208,211-229,230-236,253-258 2j0w d2j0wa1 A:244-255,260-271,273-278,286-291 1ohb d1ohba_ A:197-208,211-229,230-236,253-258 1oh9 d1oh9a_ A:197-208,211-229,230-236,253-258 2buf d2bufe1 E:235-246,249-266,268-274,292-296 2v4y d2v4yc1 C:188-196,201-212,214-219,236-240 2v4y d2v4ye1 E:188-196,201-212,214-219,236-240 2v4y d2v4yd1 D:188-196,201-212,214-219,236-240 2v4y d2v4yf1 F:188-196,201-212,214-219,236-240 2v4y d2v4yb1 B:188-196,201-212,214-219,236-240 2v4y d2v4ya1 A:188-196,201-212,214-219,236-240 1ybd d1ybdb1 B:188-196,201-212,214-219,236-240 2bne d2bnea1 A:188-196,201-212,214-219,236-240 2cdq d2cdqa1 A:276-284,292-303,305-311,318-322 2a1f d2a1fd1 D:185-193,198-209,211-216,233-237 2a1f d2a1fe1 E:185-193,198-209,211-216,233-237 1ybd d1ybdc1 C:188-196,201-212,214-219,236-240 2a1f d2a1ff1 F:185-193,198-209,211-216,233-237 2cdq d2cdqb1 B:276-284,292-303,305-311,318-322 2bne d2bneb1 B:188-196,201-212,214-219,236-240 2bnf d2bnfa1 A:188-196,201-212,214-219,236-240 2a1f d2a1fc1 C:185-193,198-209,211-216,233-237 2bnd d2bnda1 A:188-196,201-212,214-219,236-240 2bnf d2bnfb1 B:188-196,201-212,214-219,236-240 2bnd d2bndb1 B:188-196,201-212,214-219,236-240 2a1f d2a1fa1 A:185-193,198-209,211-216,233-237 2a1f d2a1fb1 B:185-193,198-209,211-216,233-237 1ybd d1ybda1 A:188-196,201-212,214-219,236-240 2buf d2bufb1 B:235-246,249-266,268-274,292-297 7. c.50.1 Macro domain-like Macro domain-like 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 165243, strand 3 is antiparallel to the rest 2afc d2afca1 A:33-44,43-57,64-70,73-80 2fg1 d2fg1a1 A:33-44,43-57,64-70,73-80 2afc d2afcb1 B:33-44,43-57,64-70,73-80 1spv d1spva_ A:32-43,43-58,64-70,76-82 2ewb d2ewba2 A:21-32,33-43,50-56,62-70 2j9a d2j9aa2 A:21-32,33-43,50-56,62-70 1gyt d1gytl1 L:29-40,41-50,58-64,71-79 1lam d1lama2 A:21-32,33-43,50-56,62-70 1gyt d1gytc1 C:29-40,41-50,58-64,71-79 1bpm d1bpma2 A:21-32,33-43,50-56,62-70 1lcp d1lcpb1 B:21-32,33-43,50-56,62-70 1lap d1lapa2 A:21-32,33-43,50-56,62-70 1zr5 d1zr5b1 B:225-236,236-251,256-263,269-276 1lcp d1lcpa1 A:21-32,33-43,50-56,62-70 1zr5 d1zr5a1 A:225-236,236-251,256-263,269-276 1lan d1lana1 A:21-32,33-43,50-56,62-70 1bpn d1bpna2 A:21-32,33-43,50-56,62-70 1zr3 d1zr3b1 B:224-235,234-250,255-262,268-275 1zr3 d1zr3a1 A:224-235,234-250,255-262,268-275 1gyt d1gytj1 J:29-40,41-50,58-64,71-79 1bll d1blle1 E:21-32,33-43,50-56,62-70 1yd9 d1yd9b1 B:48-59,58-74,79-86,92-99 1gyt d1gytd1 D:29-40,41-50,58-64,71-79 1zr3 d1zr3d1 D:224-235,234-250,255-262,268-275 1yd9 d1yd9d1 D:48-59,58-74,79-86,92-99 1gyt d1gytb1 B:29-40,41-50,56-64,71-79 2fxk d2fxka1 A:224-235,234-250,255-262,268-275 1zr3 d1zr3c1 C:224-235,234-250,255-262,268-275 1gyt d1gyta1 A:29-40,41-50,58-64,71-80 2fxk d2fxkb1 B:224-235,234-250,255-262,268-275 1yd9 d1yd9a1 A:48-59,58-74,79-86,92-99 1gyt d1gytg1 G:29-40,41-50,58-64,71-79 1gyt d1gytf1 F:29-40,41-50,56-64,71-79 2acf d2acfa1 A:229-240,241-255,260-269,272-279 1yd9 d1yd9c1 C:48-59,58-74,79-86,92-99 1gyt d1gytk1 K:29-40,41-50,56-64,71-79 1gyt d1gyte1 E:29-40,41-50,58-64,71-79 2bfq d2bfqa1 A:41-53,54-71,80-85,94-100 1vhu d1vhua_ A:48-60,61-78,87-92,101-107 2bfr d2bfra_ A:41-53,54-71,80-85,94-100 2acf d2acfb1 B:229-240,241-255,260-269,272-279 2acf d2acfc1 C:229-240,241-255,260-269,272-279 1gyt d1gyth1 H:29-40,41-50,55-64,71-80 1hjz d1hjzb_ B:41-53,54-71,80-85,94-100 1hjz d1hjza_ A:41-53,54-71,80-85,94-100 1gyt d1gyti1 I:29-40,41-50,55-64,71-80 1njr d1njra_ A:86-98,98-111,120-125,139-148 1ty8 d1ty8a_ A:87-98,98-111,119-125,139-150 1txz d1txza_ A:87-98,98-111,119-125,139-150 2acf d2acfd1 D:229-240,241-255,260-267,272-279 11. d.328.1 CorA soluble domain-like CorA soluble domain-like beta(2)-alpha-beta-alpha(2)-beta(4)-alpha(3); 3 layers: a/b/a; mixed beta-sheet, order 2137654; strands 3 and 7 are parallel 2bbj d2bbjf1 F:69-81,83-93,122-133,134-141 2bbj d2bbja1 A:69-81,83-93,122-133,134-141 2bbj d2bbjd1 D:69-81,83-93,122-133,134-141 2bbh d2bbha1 A:69-81,83-93,122-133,134-141 2bbj d2bbjb1 B:69-81,83-93,121-133,134-141 2bbj d2bbje1 E:69-81,83-93,121-133,134-141 2iub d2iubc1 C:69-81,83-93,119-133,134-141 2iub d2iube1 E:69-81,83-93,119-133,134-141 2iub d2iubf1 F:69-81,83-93,119-133,134-141 2iub d2iubj1 J:69-81,83-93,119-133,134-141 2iub d2iubg1 G:69-81,83-93,119-133,134-141 2iub d2iuba1 A:69-81,83-93,119-133,134-141 2iub d2iubh1 H:69-81,83-93,119-133,134-141 2iub d2iubb1 B:69-81,83-93,119-133,134-141 2iub d2iubi1 I:69-81,83-93,119-133,134-141 2iub d2iubd1 D:69-81,83-93,119-133,134-141 2hn2 d2hn2b1 B:2069-2081,2083-2093,2119-2133,2134-2141 2hn2 d2hn2a1 A:1069-1081,1083-1093,1119-1133,1134-1141 2hn2 d2hn2e1 E:5069-5081,5083-5093,5119-5133,5134-5141 2hn2 d2hn2d1 D:4069-4081,4083-4093,4119-4133,4134-4141 2hn2 d2hn2c1 C:3069-3081,3083-3093,3119-3133,3134-3141 12. d.90.1 FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like core: (alpha-beta-alpha-beta)2; 3 layers a/b/a; antiparallel beta-sheet: 1243 1kqb d1kqba_ A:53-65,64-78,159-165,182-193 1nec d1necd_ D:52-64,63-78,158-164,181-192 1kqb d1kqbb_ B:53-65,64-78,159-165,182-193 1kqc d1kqcb_ B:53-65,64-78,159-165,182-193 1kqc d1kqcd_ D:53-65,64-78,159-165,182-193 1kqb d1kqbd_ D:53-65,64-78,159-165,182-193 1oon d1oonb_ B:53-65,68-79,159-165,182-193 1kqd d1kqdd_ D:53-65,64-78,159-165,182-193 1kqd d1kqdb_ B:53-65,64-78,159-165,182-193 1nec d1neca_ A:52-64,63-77,158-164,181-192 1nec d1necb_ B:52-64,63-77,158-164,181-192 1oon d1oona_ A:53-65,64-78,159-165,182-193 1icr d1icra_ A:53-65,64-78,159-165,182-193 1ooq d1ooqa_ A:53-65,68-78,159-165,182-193 1oo5 d1oo5a_ A:53-65,68-79,160-165,182-192 1oo6 d1oo6b_ B:53-65,68-79,160-165,182-192 1kqc d1kqca_ A:53-65,65-78,160-165,182-192 1kqb d1kqbc_ C:53-65,68-78,159-165,182-193 1idt d1idtb_ B:53-65,68-79,160-165,182-192 1icv d1icvb_ B:53-65,64-78,159-165,182-193 1ylr d1ylrb1 B:53-65,68-79,160-165,182-192 1icr d1icrb_ B:53-65,68-79,159-165,182-193 1kqd d1kqda_ A:53-65,64-78,160-165,182-192 1yki d1ykic1 C:53-65,64-78,160-165,182-192 1ylu d1ylub1 B:53-65,64-78,160-165,182-192 1ds7 d1ds7a_ A:53-65,68-79,159-165,182-193 1ylu d1ylua1 A:53-65,64-78,160-165,182-192 1kqd d1kqdc_ C:53-65,68-78,159-165,182-193 1ylr d1ylra1 A:53-65,64-78,160-165,182-192 1yki d1ykia1 A:53-65,64-78,160-165,182-192 1icv d1icva_ A:53-65,68-78,159-165,182-193 1oo6 d1oo6a_ A:53-65,64-78,160-165,182-192 1yki d1ykib1 B:53-65,64-78,160-165,182-192 1kqc d1kqcc_ C:53-65,68-78,159-165,182-193 1idt d1idta_ A:53-65,64-78,160-165,182-192 1yki d1ykid1 D:53-65,64-78,160-165,182-192 1nec d1necc_ C:52-64,63-77,159-164,181-191 1ooq d1ooqb_ B:53-65,68-78,159-165,182-193 1oo5 d1oo5b_ B:53-67,68-79,159-165,182-193 1icu d1icud_ D:53-65,64-78,160-165,182-192 1icu d1icua_ A:53-65,64-78,160-165,182-192 1icu d1icub_ B:53-65,68-78,160-165,182-192 1ds7 d1ds7b_ B:53-67,68-79,159-165,182-193 1icv d1icvc_ C:53-65,68-78,160-165,182-192 1icu d1icuc_ C:53-65,68-78,160-165,182-192 1icv d1icvd_ D:53-65,68-78,160-165,182-192 1vfr d1vfrb_ B:55-67,70-81,160-165,182-192 1v5y d1v5yb1 B:55-67,70-81,160-165,182-192 1vfr d1vfra_ A:55-69,70-81,160-165,182-192 1v5y d1v5ya1 A:55-69,70-81,160-165,182-192 1v5z d1v5za1 A:55-69,70-81,160-165,182-192 1v5z d1v5zb1 B:55-69,70-81,160-165,182-192 2fre d2freb1 B:64-75,75-85,130-136,152-163 2b67 d2b67b1 B:53-62,62-73,148-154,170-181 2b67 d2b67a1 A:53-61,61-72,148-154,170-181 2b67 d2b67c1 C:53-61,61-72,148-154,170-181 2b67 d2b67d1 D:53-61,61-72,148-154,170-181 2fre d2frea1 A:64-74,75-85,130-136,152-163 2ifa d2ifad1 D:55-74,75-93,143-149,167-178 2ifa d2ifaf1 F:55-71,75-93,143-149,167-178 2ifa d2ifaa1 A:55-74,75-93,143-149,168-178 2ifa d2ifab1 B:55-74,75-93,143-149,168-178 2ifa d2ifac1 C:55-74,75-93,143-149,168-178 2ifa d2ifae1 E:55-74,75-93,143-149,168-178 1ywq d1ywqa1 A:57-76,77-94,145-151,170-180 13. e.41.1 Adenylylcyclase toxin (the edema factor) Domain 1 has topological and active site similarity to the Nucleotidyltransferases (eg. 1kny N-domain); domain 3 binds calmodulin ! Adenylylcyclase toxin (the edema factor) 3 domains: (1&2) alpha+beta, with domain 2 being inserted in domain 1; (3) all-alpha 1sk6 d1sk6a_ A:297-306,308-323,323-329,591-598 1lvc d1lvcc_ C:297-306,308-323,323-329,591-598 1lvc d1lvca_ A:297-306,308-323,323-329,591-598 1k93 d1k93a_ A:297-306,308-323,323-329,591-598 1pk0 d1pk0a_ A:297-306,308-323,323-329,591-598 1k90 d1k90a_ A:297-306,308-323,323-329,591-598 1pk0 d1pk0c_ C:297-306,308-323,323-329,591-598 1k93 d1k93c_ C:297-306,308-323,323-329,591-598 1pk0 d1pk0b_ B:297-306,308-323,323-329,591-598 1s26 d1s26a_ A:297-306,308-323,323-329,591-598 1lvc d1lvcb_ B:297-306,308-323,323-329,591-598 1k90 d1k90c_ C:297-306,308-323,323-329,591-598 1s26 d1s26c_ C:297-306,308-323,323-329,591-598 1k90 d1k90b_ B:297-306,308-323,323-329,591-598 1k8t d1k8ta_ A:297-306,308-323,323-329,592-598 1sk6 d1sk6c_ C:297-306,308-323,323-329,591-598 1s26 d1s26b_ B:297-306,308-323,323-329,591-598 1k93 d1k93b_ B:297-306,308-323,323-329,591-598 1sk6 d1sk6b_ B:297-306,308-323,323-329,591-598 15. d.5.1 RNase A-like can be classified as disulfide-rich ! RNase A-like contains long curved beta-sheet and 3 helices 2rnf d2rnfb_ B:0-13,49-59,70-77,100-109 1rnf d1rnfa_ A:0-13,49-59,70-77,100-109 1rnf d1rnfb_ B:0-13,49-60,67-77,100-109 1gv7 d1gv7a_ A:3-14,49-61,70-74,105-111 1m58 d1m58a_ A:3-12,41-53,55-60,86-93 2p46 d2p46c1 C:3-13,50-62,71-75,105-112 2rnf d2rnfa_ A:0-13,49-59,70-75,99-109 1qwq d1qwqa_ A:2-13,50-62,71-75,105-112 1eic d1eica_ A:3-13,50-62,71-75,105-112 1eie d1eiea_ A:3-13,50-62,71-75,105-112 1izr d1izra_ A:3-13,50-62,71-75,105-112 2p46 d2p46a1 A:3-13,50-62,71-75,105-113 1wbu d1wbua1 A:3-13,50-62,71-75,105-112 2p4a d2p4ac1 C:3-13,50-62,71-75,105-112 2p47 d2p47a1 A:3-13,50-62,71-75,105-112 1z7x d1z7xx1 X:3-13,50-62,71-75,103-112 1rnc d1rnca_ A:3-13,50-62,71-75,105-112 2p42 d2p42a1 A:3-13,50-62,71-75,105-112 1a4y d1a4ye_ E:3-14,49-59,68-73,103-109 1xpt d1xpta_ A:3-13,50-62,71-75,105-112 1rca d1rcaa_ A:3-13,50-62,71-75,105-112 1c8w d1c8wa_ A:3-13,50-62,71-75,105-112 1h53 d1h53a_ A:3-14,49-59,68-73,102-109 1h52 d1h52a_ A:2-14,49-59,68-73,102-109 1b6v d1b6va_ A:3-13,50-62,71-76,105-112 1agi d1agia_ A:3-15,50-60,69-74,103-110 1awz d1awza_ A:1-14,49-59,68-73,103-109 1dyt d1dyta_ A:6-16,47-58,70-74,106-114 1k59 d1k59a_ A:3-14,49-59,68-73,102-109 1eid d1eida_ A:3-13,50-61,71-75,105-112 3rsp d3rspa_ A:3-13,50-62,71-75,105-112 2q4g d2q4gz1 Z:3-13,50-62,71-75,103-112 1b6v d1b6vb_ B:3-13,50-62,71-75,105-112 1k5b d1k5ba_ A:3-14,49-59,68-73,102-109 1rta d1rtae_ E:3-13,50-62,71-75,105-112 2e3w d2e3wa1 A:3-13,50-61,71-75,105-112 3dh5 d3dh5a1 A:3-13,50-61,71-75,105-112 1fs3 d1fs3a_ A:3-13,50-61,71-75,105-112 4rat d4rata_ A:3-13,50-61,71-75,105-112 2ang d2anga_ A:1-14,49-59,68-73,102-109 2blp d2blpa1 A:3-13,50-61,71-75,105-112 1dfj d1dfje_ E:3-13,50-62,71-75,105-112 2blz d2blza1 A:3-13,50-61,71-75,105-112 1b1e d1b1ea_ A:2-14,49-59,68-73,102-109 1un5 d1un5a_ A:3-14,50-60,69-74,103-110 1izq d1izqa_ A:3-13,50-61,71-75,105-112 1hby d1hbya_ A:2-14,49-59,68-73,102-109 1izp d1izpa_ A:3-13,50-61,71-75,105-112 1n1x d1n1xa_ A:3-13,50-61,71-75,105-112 1n3z d1n3za_ A:3-13,50-61,71-75,105-112 1rsm d1rsma_ A:3-13,50-61,71-75,105-112 1b1i d1b1ia_ A:3-14,49-59,68-73,102-109 1r3m d1r3ma_ A:3-13,50-61,71-75,105-112 3rsk d3rska_ A:3-13,50-61,71-75,105-112 1w4q d1w4qa1 A:3-13,50-61,71-75,105-112 2g4x d2g4xa1 A:3-13,50-61,71-75,105-112 8rat d8rata_ A:3-13,50-61,71-75,105-112 1ruv d1ruva_ A:3-13,50-61,71-75,105-112 2g4w d2g4wb1 B:3-13,50-61,71-75,105-112 1z6s d1z6sb1 B:3-13,50-61,71-75,105-112 1w4o d1w4oa1 A:3-13,50-61,71-75,105-112 1js0 d1js0a_ A:3-13,50-61,71-75,105-113 6rsa d6rsaa_ A:3-13,50-61,71-75,105-112 2p4a d2p4aa1 A:3-13,50-61,71-75,105-112 1z6d d1z6db1 B:3-13,50-61,71-75,105-112 1w4q d1w4qb1 B:3-13,50-61,71-75,105-112 2g8r d2g8rb1 B:3-13,50-61,71-75,105-112 2p48 d2p48a1 A:3-13,50-61,71-75,105-112 1o0o d1o0oa_ A:3-13,50-61,71-75,105-112 1rhb d1rhba_ A:3-13,50-61,71-75,105-112 2p42 d2p42c1 C:3-13,50-61,71-75,105-112 1r3m d1r3mb_ B:3-13,50-61,71-75,105-112 1w4p d1w4pb1 B:3-13,50-61,71-75,105-112 2g8q d2g8qb1 B:3-13,50-61,71-75,105-112 1srn d1srna_ A:3-13,50-61,71-75,105-113 1rnz d1rnza_ A:3-13,50-61,71-75,105-112 1w4p d1w4pa1 A:3-13,50-61,71-75,105-112 1wbu d1wbub1 B:3-13,50-61,71-75,105-112 1ssb d1ssb.1 A:3-13,50-61,71-75,105-113 1z6d d1z6da1 A:3-13,50-61,71-75,105-112 1o0n d1o0nb_ B:3-13,50-61,71-75,105-112 1o0h d1o0hb_ B:3-13,50-61,71-75,105-112 1o0f d1o0fb_ B:3-13,50-61,71-75,105-112 1o0m d1o0mb_ B:3-13,50-61,71-75,105-112 1o0f d1o0fa_ A:3-13,50-61,71-75,105-112 2p49 d2p49a1 A:3-13,50-61,71-75,105-112 1b1j d1b1ja_ A:1-14,49-59,68-73,103-109 5rsa d5rsaa_ A:3-13,50-61,71-75,105-112 4rsd d4rsda_ A:3-13,50-61,71-75,105-112 1rnx d1rnxa_ A:3-13,50-61,71-75,105-112 7rsa d7rsaa_ A:3-13,50-61,71-75,105-112 1un4 d1un4a_ A:3-14,49-59,68-73,102-109 1rcn d1rcne_ E:3-13,50-61,71-75,105-112 1eos d1eosa_ A:3-13,50-61,71-75,105-112 1o0o d1o0ob_ B:3-13,50-61,71-75,105-112 1w4o d1w4ob1 B:3-13,50-61,71-75,105-112 1eow d1eowa_ A:3-13,50-61,71-75,105-112 1rnw d1rnwa_ A:3-13,50-61,71-75,105-112 1o0m d1o0ma_ A:3-13,50-61,71-75,105-112 2qca d2qcaa1 A:3-13,50-61,71-75,105-112 1jn4 d1jn4b_ B:3-13,50-61,71-75,105-112 1c9x d1c9xa_ A:3-13,50-61,71-75,105-112 1rnv d1rnva_ A:3-13,50-61,71-75,105-112 2p43 d2p43a1 A:3-13,50-61,71-75,105-112 1ssc d1ssc.1 A:3-13,50-61,71-75,105-112 1jvu d1jvua_ A:3-13,50-61,71-75,105-112 2rns d2rnsa_ A:3-13,50-61,71-75,105-112 1rnu d1rnua_ A:3-13,50-61,71-75,105-112 2g8q d2g8qa1 A:3-13,50-61,71-75,105-112 1rny d1rnya_ A:3-13,50-61,71-75,105-112 1afk d1afka_ A:3-13,50-61,71-75,105-112 1rbb d1rbba_ A:3-13,50-61,71-75,105-112 1kf8 d1kf8a_ A:3-13,50-61,71-75,105-112 1rha d1rhaa_ A:3-13,50-61,71-75,105-112 1o0n d1o0na_ A:3-13,50-61,71-75,105-112 2p45 d2p45a1 A:3-13,50-61,71-75,105-112 1dyt d1dytb_ B:6-16,47-58,68-75,106-114 1rno d1rnoa_ A:3-13,50-61,71-75,105-112 2p44 d2p44a1 A:3-13,50-61,71-75,105-112 1rar d1rara_ A:3-13,50-61,71-75,105-112 7rat d7rata_ A:3-13,50-61,71-75,105-112 1rnn d1rnne_ E:3-13,50-61,71-75,105-112 1rbw d1rbwa_ A:3-13,50-61,71-75,105-112 1eos d1eosb_ B:3-13,50-61,71-75,105-112 1a5p d1a5pa_ A:3-13,50-61,71-75,105-112 1kf7 d1kf7a_ A:3-13,50-61,71-75,105-112 1c9v d1c9va_ A:3-13,50-61,71-75,105-112 1ssa d1ssa.1 A:3-13,50-61,71-75,105-113 1z7x d1z7xz1 Z:3-13,50-61,71-75,103-112 1rnq d1rnqa_ A:3-13,50-61,71-75,105-112 1rbx d1rbxa_ A:3-13,50-61,71-75,105-112 1bzq d1bzqc_ C:403-413,450-461,471-475,505-512 1bzq d1bzqa_ A:3-13,50-61,71-75,105-112 1jvu d1jvub_ B:3-13,50-61,71-75,105-112 1js0 d1js0b_ B:3-13,50-61,71-75,105-113 1u1b d1u1bb1 B:3-13,50-61,71-75,105-112 1afk d1afkb_ B:3-13,50-61,71-75,105-112 1bzq d1bzqb_ B:203-213,250-261,271-275,305-312 1rnm d1rnme_ E:3-13,50-61,71-75,105-112 6rat d6rata_ A:3-13,50-61,71-75,105-112 1rph d1rpha_ A:3-13,50-61,71-75,105-112 1kf2 d1kf2a_ A:3-13,50-61,71-75,105-112 1kf3 d1kf3a_ A:3-13,50-61,71-75,105-112 3rsd d3rsda_ A:3-13,50-61,71-75,105-112 1afu d1afub_ B:3-13,50-61,71-75,105-112 1qhc d1qhca_ A:3-13,50-61,71-75,105-112 4srn d4srn.1 A:3-13,50-61,71-75,105-113 1kf4 d1kf4a_ A:3-13,50-61,71-75,105-112 1kf5 d1kf5a_ A:3-13,50-61,71-75,105-112 1bzq d1bzqd_ D:603-613,650-661,671-675,705-712 9rsa d9rsab_ B:3-13,50-61,71-75,105-112 1qhc d1qhcb_ B:3-13,50-61,71-75,105-112 4rsk d4rska_ A:3-13,50-61,71-75,105-112 1jvv d1jvvb_ B:3-13,50-61,71-75,105-112 1afl d1afla_ A:3-13,50-61,71-75,105-112 3srn d3srn.1 A:3-13,50-61,71-75,105-112 1rbj d1rbja_ A:3-13,50-61,71-75,105-112 1afu d1afua_ A:3-13,50-61,71-75,105-112 1xpt d1xptb_ B:3-13,50-61,71-75,105-112 5rat d5rata_ A:3-13,50-61,71-75,105-112 1afl d1aflb_ B:3-13,50-61,71-75,105-112 1jvt d1jvta_ A:3-13,50-61,71-75,105-112 3rn3 d3rn3a_ A:3-13,50-61,71-75,105-112 1jvv d1jvva_ A:3-13,50-61,71-75,105-112 1jvt d1jvtb_ B:3-13,50-61,71-75,105-112 9rat d9rata_ A:3-13,50-61,71-75,105-112 1ang d1anga_ A:3-14,49-59,68-73,103-109 1u1b d1u1ba1 A:3-13,50-61,71-75,105-112 1dza d1dzab_ B:103-113,150-161,171-175,203-212 1c0b d1c0ba_ A:1-13,50-60,71-75,105-112 1a4y d1a4yb_ B:3-14,49-59,68-73,103-109 1aqp d1aqpa_ A:3-13,50-61,71-75,105-112 1c0c d1c0ca_ A:1-13,50-60,71-75,105-111 1dza d1dzaa_ A:103-113,150-161,171-175,203-212 1pu3 d1pu3a_ A:3-12,41-50,52-72,86-93 1xps d1xpsa_ A:3-13,50-61,71-75,105-112 2c02 d2c02a1 A:6-18,47-58,70-75,106-114 8rsa d8rsab_ B:3-13,50-61,71-75,105-112 1k58 d1k58a_ A:3-14,49-59,68-73,103-109 1kh8 d1kh8a_ A:3-13,50-61,71-75,105-111 2c05 d2c05a1 A:6-18,47-58,70-74,106-114 2rat d2rata_ A:3-13,50-60,71-75,105-112 1k5a d1k5aa_ A:3-14,49-59,68-73,103-109 1rat d1rata_ A:3-13,50-60,71-75,105-112 1un3 d1un3a_ A:3-14,49-59,68-73,103-109 3rat d3rata_ A:3-13,50-60,71-75,105-112 1hi4 d1hi4a_ A:6-18,47-58,70-74,106-114 2e33 d2e33b1 B:3-13,50-60,71-75,105-112 1dy5 d1dy5b_ B:3-13,50-60,71-75,105-112 1a5q d1a5qa_ A:3-13,50-60,71-75,105-112 2aas d2aasa_ A:3-13,50-61,71-75,105-112 2bex d2bexd1 D:6-18,47-57,70-74,106-114 1o0h d1o0ha_ A:3-13,50-60,71-75,105-112 1jn4 d1jn4a_ A:3-13,50-60,71-75,105-112 2bzz d2bzza1 A:1006-1018,1047-1058,1070-1074,1106-1114 1rpg d1rpga_ A:3-13,50-60,71-75,105-112 2c01 d2c01x1 X:6-18,47-58,70-74,106-114 9rsa d9rsaa_ A:3-13,50-60,71-75,105-112 1z6s d1z6sa1 A:3-13,50-60,71-75,105-112 1hi5 d1hi5a_ A:6-18,47-58,70-74,106-114 2g8r d2g8ra1 A:3-13,50-60,71-75,105-112 1js0 d1js0c_ C:3-13,50-60,71-75,105-113 1k2a d1k2aa_ A:6-18,47-58,70-74,106-114 1gqv d1gqva_ A:6-18,47-58,70-74,106-114 1hi2 d1hi2a_ A:6-18,47-58,68-75,106-114 1rnd d1rnda_ A:3-13,50-60,71-75,105-112 1rbn d1rbna_ A:3-13,50-60,71-75,105-112 1rob d1roba_ A:3-13,50-60,71-75,105-112 1onc d1onca_ A:2-11,40-49,51-59,85-92 1lsq d1lsqb_ B:3-13,50-60,71-75,105-112 2g4w d2g4wa1 A:3-13,50-60,71-75,105-112 1bel d1bela_ A:3-13,50-60,71-75,105-112 1rpf d1rpfa_ A:3-13,50-60,71-75,105-112 1gio d1gioa_ A:7-15,50-60,69-74,104-110 1ras d1rasa_ A:3-13,50-60,71-75,105-112 1lsq d1lsqa_ A:3-13,50-60,71-75,105-112 1dy5 d1dy5a_ A:3-13,50-60,71-75,105-112 1qmt d1qmta_ A:6-16,47-57,68-74,106-114 1rbb d1rbbb_ B:3-13,50-60,71-75,105-112 2bex d2bexc1 C:6-18,47-58,70-75,106-114 1xps d1xpsb_ B:3-13,50-60,71-76,105-112 8rsa d8rsaa_ A:3-13,50-60,71-75,105-112 1hi3 d1hi3a_ A:6-18,47-58,68-74,106-114 1rtb d1rtba_ A:3-13,50-60,71-75,105-112 1rra d1rraa_ A:3-13,50-60,71-76,105-112 1m07 d1m07a_ A:2-11,44-53,56-62,91-98 1h1h d1h1ha_ A:6-16,47-57,68-74,106-114 2i5s d2i5sx1 X:2-11,40-49,54-59,85-92 1oj8 d1oj8a_ A:2-11,40-49,53-59,85-92 1km9 d1km9a_ A:2-11,44-53,56-62,91-98 2q4g d2q4gx1 X:3-13,50-62,68-75,103-112 1m07 d1m07b_ B:2-11,44-53,56-62,91-98 1km8 d1km8a_ A:2-11,44-53,56-62,91-98 1oj1 d1oj1a_ A:2-11,40-49,54-59,85-92 1kvz d1kvza_ A:3-12,41-50,52-60,87-94 1bc4 d1bc4a_ A:2-12,44-53,56-62,91-98 2k11 d2k11a1 A:3-13,50-62,71-76,103-110 1h0d d1h0dc_ C:4-14,49-58,67-72,103-109 1f0v d1f0vd_ D:603-613,650-661,671-675,705-724 1f0v d1f0vc_ C:403-413,450-461,471-475,505-524 1f0v d1f0vb_ B:203-213,250-261,271-275,305-324 1f0v d1f0va_ A:3-13,50-61,71-75,105-124 16. d.370.1 BTG domain-like BTG domain-like alpha(2)-beta-alpha(2)-beta(3); four-helical bundle, capped at one end by an antiparallel beta-sheet, order:1234 2d5r d2d5rb1 B:24-41,45-65,81-85,113-120 2z15 d2z15a1 A:8-26,30-53,66-70,98-105 2z15 d2z15b1 B:6-26,30-53,66-70,98-105 2z15 d2z15c1 C:9-26,30-50,66-70,98-105 2z15 d2z15d1 D:6-26,30-50,66-70,98-105 26. d.142.2 DNA ligase/mRNA capping enzyme, catalytic domain has a circularly permuted topology ! ATP-grasp Consists of two subdomains with different alpha+beta folds ! shares functional and structural similarities with the PIPK and protein kinase superfamilies 1b04 d1b04b_ B:89-105,257-272,278-287,304-310 1b04 d1b04a_ A:89-105,257-272,278-287,304-309 1tae d1taed_ D:94-110,263-278,284-293,310-316 1ta8 d1ta8a_ A:94-110,263-278,284-293,310-316 1tae d1taec_ C:94-110,263-278,284-293,310-316 1tae d1taea_ A:94-110,263-278,284-293,310-316 1tae d1taeb_ B:94-110,263-278,284-293,310-316 1p16 d1p16b2 B:49-56,201-212,218-227,238-243 1dgs d1dgsa3 A:90-105,260-275,282-290,307-313 1v9p d1v9pa3 A:90-105,263-278,284-293,310-316 1p16 d1p16a2 A:49-56,201-215,218-227,238-243 1dgs d1dgsb3 B:2090-2103,2260-2278,2282-2290,2307-2313 1s68 d1s68a_ A:13-24,157-164,205-211,223-227 1xdn d1xdna_ A:65-76,250-257,284-290,304-309 1v9p d1v9pb3 B:2090-2106,2263-2281,2284-2293,2310-2316 1a0i d1a0ia2 A:15-27,200-215,218-223,235-240 28. d.280.1 Sulfolobus fructose-1,6-bisphosphatase-like Sulfolobus fructose-1,6-bisphosphatase-like 4 layers: a/b/b/a; antiparallel beta sheets; similarities to ferredoxin-like fold (scop_cf 54861) in the N-terminal part (1-120) and to the Bacterial S-adenosylmethionine decarboxylase subunit (scop_fa 997656) in the C-terminal part (121-340) 1umg d1umga_ A:135-149,186-197,199-209,210-218 29. d.73.1 RuBisCO, small subunit RuBisCO, small subunit alpha-beta(2)-alpha-beta(2); 2 layers, alpha/beta 1gk8 d1gk8i_ I:22-37,85-101,103-112,115-126 1uzh d1uzhf1 F:22-37,67-83,85-94,97-108 1uzh d1uzhj1 J:22-37,67-83,85-94,97-108 1uzh d1uzhp1 P:22-37,67-83,85-94,97-108 1uzh d1uzhi1 I:22-37,67-83,85-94,97-108 1uzh d1uzhm1 M:22-37,67-83,85-94,97-108 1gk8 d1gk8m_ M:22-37,85-101,103-112,115-126 1gk8 d1gk8o_ O:22-37,85-101,103-112,115-126 1gk8 d1gk8k_ K:22-37,85-101,103-112,115-126 2v68 d2v68p1 P:22-37,85-101,103-112,115-126 1ir2 d1ir22_ 2:22-37,85-101,103-112,115-126 1ir2 d1ir2l_ L:22-37,85-101,103-112,115-126 2v67 d2v67k1 K:22-37,85-101,103-112,115-126 2v63 d2v63j1 J:22-37,85-101,103-112,115-126 2v63 d2v63n1 N:22-37,85-101,103-112,115-126 2v67 d2v67m1 M:22-37,85-101,103-112,115-126 2v69 d2v69k1 K:22-37,85-101,103-112,115-126 2v63 d2v63k1 K:22-37,85-101,103-112,115-126 2v63 d2v63p1 P:22-37,85-101,103-112,115-126 2v63 d2v63i1 I:22-37,85-101,103-112,115-126 2v6a d2v6aj1 J:22-37,85-101,103-112,115-126 2v63 d2v63o1 O:22-37,85-101,103-112,115-126 2v67 d2v67o1 O:22-37,85-101,103-112,115-126 2v69 d2v69j1 J:22-37,85-101,103-112,115-126 1ir2 d1ir2i_ I:22-37,85-101,103-112,115-126 2v67 d2v67n1 N:22-37,85-101,103-112,115-126 1ir2 d1ir2n_ N:22-37,85-101,103-112,115-126 1uw9 d1uw9i1 I:22-37,85-101,103-112,115-126 2v69 d2v69m1 M:22-37,85-101,103-112,115-126 1uw9 d1uw9w1 W:22-37,85-101,103-112,115-126 1rld d1rldt_ T:522-537,579-595,597-606,609-620 2v63 d2v63l1 L:22-37,85-101,103-112,115-126 1rld d1rlds_ S:522-537,579-595,597-606,609-620 2v69 d2v69i1 I:22-37,85-101,103-112,115-126 1uw9 d1uw9j1 J:22-37,85-101,103-112,115-126 1ir2 d1ir2m_ M:22-37,85-101,103-112,115-126 2v6a d2v6al1 L:22-37,85-101,103-112,115-126 1uw9 d1uw9p1 P:22-37,85-101,103-112,115-126 1ir2 d1ir28_ 8:22-37,85-101,103-112,115-126 2v67 d2v67l1 L:22-37,85-101,103-112,115-126 2v69 d2v69o1 O:22-37,85-101,103-112,115-126 1uw9 d1uw9c1 C:22-37,85-101,103-112,115-126 2v6a d2v6am1 M:22-37,85-101,103-112,115-126 2v68 d2v68n1 N:22-37,85-101,103-112,115-126 2v68 d2v68l1 L:22-37,85-101,103-112,115-126 2v69 d2v69l1 L:22-37,85-101,103-112,115-126 1uw9 d1uw9t1 T:22-37,85-101,103-112,115-126 2v69 d2v69n1 N:22-37,85-101,103-112,115-126 2v6a d2v6ai1 I:22-37,85-101,103-112,115-126 1uw9 d1uw9f1 F:22-37,85-101,103-112,115-126 2v6a d2v6ao1 O:22-37,85-101,103-112,115-126 1uw9 d1uw9m1 M:22-37,85-101,103-112,115-126 2v6a d2v6ak1 K:22-37,85-101,103-112,115-126 1ir2 d1ir27_ 7:22-37,85-101,103-112,115-126 2v6a d2v6an1 N:22-37,85-101,103-112,115-126 1ir2 d1ir23_ 3:22-37,85-101,103-112,115-126 2v6a d2v6ap1 P:22-37,85-101,103-112,115-126 1ir2 d1ir2p_ P:22-37,85-101,103-112,115-126 2v68 d2v68m1 M:22-37,85-101,103-112,115-126 1ir2 d1ir2o_ O:22-37,85-101,103-112,115-126 1uzh d1uzhw1 W:22-37,67-83,85-95,96-108 1uzh d1uzht1 T:22-37,67-83,85-95,96-108 1uzh d1uzhc1 C:22-37,67-83,85-95,96-108 1svd d1svdm1 M:23-38,68-84,85-95,98-110 1rcx d1rcxs_ S:22-37,79-95,97-107,108-120 1rcx d1rcxp_ P:22-37,79-95,97-107,108-120 1rcx d1rcxm_ M:22-37,79-95,97-107,108-120 1rcx d1rcxt_ T:22-37,79-95,97-107,108-120 1rcx d1rcxi_ I:22-37,79-95,97-107,108-120 1rcx d1rcxw_ W:22-37,79-95,97-107,108-120 1rcx d1rcxf_ F:22-37,79-95,97-107,108-120 1rcx d1rcxc_ C:22-37,79-95,97-107,108-120 1aus d1aust_ T:22-37,79-95,97-106,109-120 1aus d1ausu_ U:22-37,79-95,97-106,109-120 1aus d1ausv_ V:22-37,79-95,97-106,109-120 1aus d1auss_ S:22-37,79-95,97-106,109-120 3rub d3rubs_ S:22-37,79-95,97-107,108-120 1rxo d1rxos_ S:22-37,79-95,97-106,109-120 1rxo d1rxoi_ I:22-37,79-95,97-106,109-120 1rxo d1rxof_ F:22-37,79-95,97-106,109-120 2v68 d2v68k1 K:22-37,85-101,103-113,114-126 1rxo d1rxoc_ C:22-37,79-95,97-106,109-120 1aa1 d1aa1s_ S:22-37,79-95,97-106,109-120 1aa1 d1aa1i_ I:22-37,79-95,97-106,109-120 1aa1 d1aa1c_ C:22-37,79-95,97-106,109-120 1aa1 d1aa1f_ F:22-37,79-95,97-106,109-120 2v67 d2v67p1 P:22-37,85-101,103-113,114-126 1ir2 d1ir2j_ J:22-37,85-101,102-112,115-127 2v67 d2v67j1 J:22-37,85-101,103-113,114-126 1uwa d1uwai1 I:22-37,85-101,103-113,114-126 1uwa d1uwap1 P:22-37,85-101,103-113,114-126 2v67 d2v67i1 I:22-37,85-101,103-113,114-126 1uwa d1uwaw1 W:22-37,85-101,103-113,114-126 2v68 d2v68i1 I:22-37,85-101,103-113,114-126 1uwa d1uwac1 C:22-37,85-101,103-113,114-126 2v63 d2v63m1 M:22-37,85-101,103-113,114-126 1uwa d1uwaf1 F:22-37,85-101,103-113,114-126 1rlc d1rlcs_ S:22-37,79-95,97-107,108-120 1uwa d1uwaj1 J:22-37,85-101,103-113,114-126 1ir2 d1ir21_ 1:22-37,85-101,103-113,114-126 2v68 d2v68j1 J:22-37,85-101,103-113,114-126 1uwa d1uwat1 T:22-37,85-101,103-113,114-126 1uwa d1uwam1 M:22-37,85-101,103-113,114-126 2v68 d2v68o1 O:22-37,85-101,103-113,114-126 1ir2 d1ir26_ 6:22-37,85-101,103-113,114-126 1ir2 d1ir2k_ K:22-37,85-101,103-113,114-126 2v69 d2v69p1 P:22-37,85-101,103-113,114-126 1uzd d1uzdf1 F:22-37,79-95,97-107,108-120 1rco d1rcot_ T:22-37,79-95,97-107,108-120 1rco d1rcom_ M:22-37,79-95,97-107,108-120 1rco d1rcoc_ C:22-37,79-95,97-107,108-120 1rco d1rcos_ S:22-37,79-95,97-107,108-120 1rco d1rcow_ W:22-37,79-95,97-107,108-120 1rco d1rcop_ P:22-37,79-95,97-107,108-120 1rco d1rcoi_ I:22-37,79-95,97-107,108-120 1rco d1rcof_ F:22-37,79-95,97-107,108-120 1uzd d1uzdi1 I:22-37,79-95,97-107,108-120 1uzd d1uzdp1 P:22-37,79-95,97-107,108-120 1uzd d1uzdc1 C:22-37,79-95,97-107,108-120 4rub d4rubs_ S:22-37,79-95,97-107,108-120 1uzd d1uzdt1 T:22-37,79-95,97-107,108-120 1wdd d1wdds_ S:22-37,78-94,96-106,107-119 4rub d4rubt_ T:22-37,79-95,97-107,108-120 1uzd d1uzdm1 M:22-37,79-95,97-107,108-120 1ir1 d1ir1t_ T:22-37,79-95,97-107,108-120 1uzd d1uzdj1 J:22-37,79-95,97-107,108-120 1uzd d1uzdw1 W:22-37,79-95,97-107,108-120 1ir2 d1ir24_ 4:22-37,85-101,103-113,114-126 1wdd d1wddw_ W:22-37,78-94,96-106,107-119 4rub d4rubv_ V:22-37,79-95,97-107,108-120 1ej7 d1ej7s_ S:522-537,579-595,597-607,608-620 1iwa d1iwal_ L:22-37,79-95,97-107A,109-120 1ir1 d1ir1s_ S:22-37,79-95,97-107,108-120 1ir1 d1ir1v_ V:22-37,79-95,97-107,108-120 1iwa d1iwap_ P:22-37,79-95,97-107A,109-120 1rbo d1rbof_ F:22-37,79-95,97-107,108-120 1rbo d1rbos_ S:22-37,79-95,97-107,108-120 1rbo d1rboc_ C:22-37,79-95,97-107,108-120 1rbo d1rboi_ I:22-37,79-95,97-107,108-120 4rub d4rubu_ U:22-37,79-95,97-107,108-120 1ir1 d1ir1u_ U:22-37,79-95,97-107,108-120 8ruc d8rucj_ J:22-37,79-95,97-107,108-120 8ruc d8ruck_ K:22-37,79-95,97-107,108-120 1bxn d1bxnk_ K:15-30,60-76,77-87,89-102 1bxn d1bxnl_ L:15-30,60-76,77-87,89-102 8ruc d8rucl_ L:22-37,79-95,97-107,108-120 1iwa d1iwaj_ J:22-37,79-95,97-107A,109-120 8ruc d8ruci_ I:22-37,79-95,97-107,108-120 1iwa d1iwan_ N:22-37,79-95,97-107A,107B-120 1rsc d1rsco_ O:22-37,79-95,96-107,108-121 1rsc d1rsck_ K:22-37,79-95,96-107,108-121 1rsc d1rsci_ I:22-37,79-95,96-107,108-121 1rsc d1rscm_ M:22-37,79-95,96-107,108-121 1rsc d1rscl_ L:22-37,79-95,96-107,108-121 1rsc d1rscn_ N:22-37,79-95,96-107,108-121 1rsc d1rscj_ J:22-37,79-95,96-107,108-121 1rsc d1rscp_ P:22-37,79-95,96-107,108-121 1iwa d1iwab_ B:22-37,79-95,97-107A,109-120 1bwv d1bwvw_ W:22-37,79-95,97-107A,107B-120 1bwv d1bwvs_ S:22-37,79-95,97-107A,107B-120 1bwv d1bwvy_ Y:22-37,79-95,97-107A,107B-120 1bwv d1bwvu_ U:22-37,79-95,97-107A,107B-120 1ir2 d1ir25_ 5:22-37,85-101,102-113,114-127 1iwa d1iwaf_ F:22-37,79-95,97-107A,107B-120 1rbl d1rbli_ I:22-37,79-95,96-107,108-121 1rbl d1rblo_ O:22-37,79-95,96-107,108-121 1rbl d1rbln_ N:22-37,79-95,96-107,108-121 1rbl d1rblp_ P:22-37,79-95,96-107,108-121 1rbl d1rbll_ L:22-37,79-95,96-107,108-121 1rbl d1rblm_ M:22-37,79-95,96-107,108-121 1rbl d1rblj_ J:22-37,79-95,96-107,108-121 1rbl d1rblk_ K:22-37,79-95,96-107,108-121 1bxn d1bxni_ I:15-30,60-76,77-88,89-102 1bxn d1bxnj_ J:15-30,60-76,77-88,89-102 1iwa d1iwad_ D:22-37,79-95,97-107A,107B-120 1iwa d1iwah_ H:22-37,79-95,97-107A,107B-120 32. d.193.1 Hsp33 domain Hsp33 domain 3 layers: beta/alpha/beta; buried helix 1hw7 d1hw7a_ A:27-35,40-61,64-75,76-86 1i7f d1i7fa_ A:27-35,40-61,64-74,76-86 1vq0 d1vq0b1 B:20-31,33-54,58-68,70-79 1vq0 d1vq0a1 A:20-31,33-54,58-68,70-79 1vzy d1vzya1 A:21-33,35-57,60-69,72-81 1vzy d1vzyb1 B:22-33,35-57,60-69,72-81 33. d.229.1 MesJ substrate recognition domain-like MesJ substrate recognition domain-like beta-alpha(2)-beta(3); 2 layers: a/b; antiparallel beta-sheet, order:1432 2e89 d2e89c2 C:263-276,279-293,294-299,301-308 2e21 d2e21c2 C:263-276,279-293,294-299,301-308 2e21 d2e21a2 A:263-276,279-293,294-299,301-308 2e21 d2e21b2 B:263-276,279-293,294-299,301-308 2e21 d2e21d2 D:263-276,279-293,294-299,301-308 2e89 d2e89b2 B:263-276,279-293,294-299,301-308 2e89 d2e89d2 D:263-276,279-293,293-299,301-307 1ni5 d1ni5a4 A:250-266,271-285,291-296,297-304 1wy5 d1wy5a2 A:263-276,279-293,294-298,300-306 2e89 d2e89a2 A:263-276,279-293,294-299,301-307 1wy5 d1wy5a2 A:255-263,279-293,294-298,300-306 1wy5 d1wy5b2 B:263-276,279-292,294-298,300-305 2e21 d2e21d2 D:255-262,279-293,294-299,301-308 35. d.298.1 RelE-like Toxin component of plasmid stabilisation system ! RelE-like beta-alpha(2)-beta(4), 2 layers; a/b, antiparallel beta-sheet; order 15432 2a6s d2a6sa1 A:6-21,20-38,55-61,63-72 2a6r d2a6rf1 F:7-21,20-38,55-61,63-72 2a6q d2a6qf1 F:6-21,20-38,55-61,63-72 2a6q d2a6qe1 E:6-21,20-38,55-61,63-72 2a6r d2a6ra1 A:7-21,20-38,55-60,63-72 2a6r d2a6rd1 D:7-21,20-38,55-60,63-72 1z8m d1z8ma1 A:7-21,23-37,56-62,64-73 2a6s d2a6sb1 B:6-21,20-38,55-60,64-72 2a6r d2a6rc1 C:7-21,20-38,55-60,64-72 2a6r d2a6rb1 B:7-21,20-38,55-60,64-72 1wmi d1wmic1 C:9-19,19-37,53-62,63-73 1wmi d1wmia1 A:9-19,19-37,53-61,63-73 38. e.18.1 HydB/Nqo4-like HydB/Nqo4-like 3 domains: (1) all-alpha; (2&3) alpha+beta 2fug d2fugm1 M:74-87,89-106,339-348,351-361 2fug d2fug41 4:74-87,89-106,339-348,351-361 2fug d2fugd1 D:74-87,89-106,339-348,351-361 2fug d2fugv1 V:74-87,89-106,339-348,351-361 1frv d1frvb_ B:53-66,68-85,451-462,463-474 2frv d2frvj_ J:53-66,68-85,451-462,463-474 2frv d2frvh_ H:53-66,68-85,451-462,463-474 2frv d2frvd_ D:53-66,68-85,451-462,463-474 2frv d2frvb_ B:53-66,68-85,451-462,463-474 2frv d2frvf_ F:53-66,68-85,451-462,463-474 2frv d2frvl_ L:53-66,68-85,451-462,463-474 1cc1 d1cc1l_ L:58-71,73-90,413-424,425-436 1frv d1frvd_ D:53-66,68-85,451-462,463-474 1yq9 d1yq9h1 H:53-66,68-85,451-462,463-474 1h2a d1h2al_ L:69-82,84-101,467-478,479-490 1yq9 d1yq9i1 I:53-66,68-85,451-462,463-474 1ubo d1ubol_ L:69-82,84-101,467-478,479-490 1ubm d1ubml_ L:69-82,84-101,467-478,479-490 1ubr d1ubrl_ L:69-82,84-101,467-478,479-490 1ubh d1ubhl_ L:69-82,84-101,467-478,479-490 1wui d1wuil1 L:69-82,84-101,467-478,479-490 1ubt d1ubtl_ L:69-82,84-101,467-478,479-490 1wuj d1wujl1 L:69-82,84-101,467-478,479-490 1ubk d1ubkl_ L:69-82,84-101,467-478,479-490 1wuk d1wukl1 L:69-82,84-101,467-478,479-490 1wuh d1wuhl1 L:69-82,84-101,467-478,479-490 1ubu d1ubul_ L:69-82,84-101,467-478,479-490 1ubj d1ubjl_ L:69-82,84-101,467-478,479-490 1ubl d1ubll_ L:69-82,84-101,467-478,479-490 1h2r d1h2rl_ L:69-82,84-101,467-478,479-490 1wul d1wull1 L:69-82,84-101,467-478,479-490 1e3d d1e3dd_ D:59-72,74-91,457-468,469-480 1e3d d1e3db_ B:59-72,74-91,457-468,469-480 1frf d1frfl_ L:60-73,75-92,464-475,476-487 39. d.294.1 EndoU-like similarity to the RNase A-like superfamily ( EndoU-like comprises several helices and two three-stranded antiparallel beta-sheets; similar architecture to the RNase A-like fold (scop_cf 54075) 2c1w d2c1wb1 B:158-166,234-250,252-261,262-273 2c1w d2c1wc1 C:158-166,234-250,252-261,262-273 2gth d2gtha2 A:259-266,326-338,342-351,352-361 2gti d2gtia2 A:259-266,326-338,342-351,352-361 2rhb d2rhbb2 B:231-238,298-309,314-323,324-335 2rhb d2rhba2 A:231-238,298-309,314-323,324-335 2rhb d2rhbc2 C:231-238,298-309,314-323,324-335 2rhb d2rhbd2 D:231-238,298-310,314-323,324-335 2h85 d2h85a2 A:231-238,298-309,314-323,324-335 40. d.67.2 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain RRF/tRNA synthetase additional domain-like core: alpha-beta(2)-alpha-beta(2); 2 layers: alpha/beta 1f7v d1f7va3 A:30-48,50-59,67-72,108-115 1f7u d1f7ua3 A:30-48,50-59,68-73,108-115 1bs2 d1bs2a3 A:30-48,50-59,68-72,108-115 46. e.56.1 YaeB-like YaeB-like 2 domains; d1: [beta-barrel (n=6, S=10), similar to the Reductase/isomerase/elongation factor common domain fold (scop_cf 50412), provides homodimerisation interface]; d2: [alpha+beta (disordered)] 1xqb d1xqba_ A:166-177,182-192,209-214,215-220 1xqb d1xqbb_ B:166-177,182-192,209-214,215-220 47. e.2.1 Replication terminator protein (Tus) Replication terminator protein (Tus) contains a cluster of helices and a beta-sandwich 2ewj d2ewja1 A:182-197,204-223,295-302,303-309 2i06 d2i06a1 A:182-197,204-223,295-302,303-309 2i05 d2i05a1 A:182-197,204-223,295-302,303-309 1ecr d1ecra_ A:182-197,204-223,295-302,303-309 49. d.338.1 Oxysterol-binding protein-like Oxysterol-binding protein-like core: large meander beta-sheet of 12 strands wrapped around the N-terminal (distorted) alpha-hairpin; some similarity to transmembrane beta-barrel proteins 1zi7 d1zi7b1 B:49-60,76-98,273-280,286-292 1zi7 d1zi7c1 C:49-60,76-99,273-280,286-292 1zi7 d1zi7a1 A:49-60,76-99,273-280,286-292 1zhz d1zhza1 A:49-60,76-105,273-280,286-292 1zhw d1zhwa1 A:49-60,76-105,273-280,286-292 1zht d1zhta1 A:49-60,76-105,273-280,286-292 1zhy d1zhya1 A:49-60,76-105,273-280,286-292 1zhx d1zhxa1 A:49-60,76-105,273-280,286-292 51. c.7.1 PFL-like glycyl radical enzymes duplication: the N- and C-terminal halves have similar topologies ! PFL-like glycyl radical enzymes contains: barrel, closed; n=10, S=10; accommodates a hairpin loop inside the barrel 2bq1 d2bq1e2 E:101-113,589-597,608-614,618-624 1peo d1peoa2 A:101-113,589-597,608-614,618-624 1peu d1peua2 A:101-113,589-597,608-614,618-624 1peq d1peqa2 A:101-113,589-597,608-614,618-624 1r1r d1r1ra2 A:144-156,622-630,641-648,649-656 1r1r d1r1rb2 B:144-156,622-630,641-648,649-656 1r1r d1r1rc2 C:144-156,622-630,641-648,649-656 4r1r d4r1rb2 B:144-156,622-630,641-648,649-656 4r1r d4r1rc2 C:144-156,622-630,641-648,649-656 4r1r d4r1ra2 A:144-156,622-630,641-648,649-656 1rlr d1rlra2 A:144-156,622-630,641-648,649-656 2r1r d2r1rb2 B:144-156,622-630,641-648,649-656 2r1r d2r1ra2 A:144-156,622-630,641-648,649-656 3r1r d3r1rc2 C:144-156,622-630,641-648,649-656 3r1r d3r1rb2 B:144-156,622-630,641-648,649-656 3r1r d3r1ra2 A:144-156,622-630,641-648,649-656 2r1r d2r1rc2 C:144-156,622-630,641-648,649-656 1pem d1pema2 A:101-113,589-597,608-614,618-624 7r1r d7r1ra2 A:144-156,622-630,641-648,649-656 7r1r d7r1rc2 C:144-156,622-630,641-648,649-656 5r1r d5r1ra2 A:144-156,622-630,641-648,649-656 5r1r d5r1rb2 B:144-156,622-630,641-648,649-656 7r1r d7r1rb2 B:144-156,622-630,641-648,649-656 5r1r d5r1rc2 C:144-156,622-630,641-648,649-656 6r1r d6r1rb2 B:144-156,622-630,641-648,649-656 6r1r d6r1ra2 A:144-156,622-630,641-648,649-656 6r1r d6r1rc2 C:144-156,622-630,641-648,649-656 1qhm d1qhma_ A:1153-1163,1438-1448,1449-1453,1454-1458 2bq1 d2bq1f2 F:101-113,589-597,608-614,618-624 2pfl d2pfla_ A:153-163,437-448,449-453,454-458 2pfl d2pflb_ B:153-163,437-448,449-453,454-458 1h18 d1h18a_ A:153-163,437-448,449-453,454-458 1h18 d1h18b_ B:153-163,437-448,449-453,454-458 1cm5 d1cm5b_ B:153-163,437-448,449-453,454-458 1cm5 d1cm5a_ A:153-163,437-448,449-453,454-458 1h16 d1h16a_ A:153-163,437-448,449-453,454-458 1h17 d1h17a_ A:153-163,437-448,449-453,454-458 3pfl d3pfla_ A:153-163,437-448,449-453,454-458 3pfl d3pflb_ B:153-163,437-448,449-453,454-458 1qhm d1qhmb_ B:2153-2163,2438-2448,2449-2453,2454-2458 54. e.7.1 Carbohydrate phosphatase Carbohydrate phosphatase N-terminal domain is an alpha+beta, C-terminal domain is an alpha/beta with mixed beta-sheet 1eyj d1eyja_ A:12-25,27-50,170-178,179-189 1kz8 d1kz8f_ F:12-25,27-50,170-178,179-189 2qvv d2qvva1 A:12-25,27-50,170-178,179-189 1kz8 d1kz8a_ A:12-25,27-50,170-178,179-189 1nv7 d1nv7a_ A:1012-1025,1027-1050,1170-1178,1179-1189 2f3h d2f3ha1 A:12-25,27-50,170-178,179-189 1eyj d1eyjb_ B:12-25,27-50,170-178,179-189 1eyk d1eyka_ A:12-25,27-50,170-178,179-189 1nv7 d1nv7b_ B:2012-2025,2027-2050,2170-2178,2179-2189 4fbp d4fbpa_ A:12-25,27-50,170-178,179-189 1fj9 d1fj9b_ B:12-25,27-50,170-178,179-189 2qvu d2qvua1 A:12-25,27-50,170-178,179-189 1rdy d1rdya_ A:12-25,27-50,170-178,179-189 1eyk d1eykb_ B:12-25,27-50,170-178,179-189 4fbp d4fbpb_ B:12-25,27-50,170-178,179-189 1fpj d1fpjb_ B:12-25,27-50,170-178,179-189 2f3h d2f3hb1 B:12-25,27-50,170-178,179-189 1fj9 d1fj9a_ A:12-25,27-50,170-178,179-189 2qvv d2qvvb1 B:12-25,28-50,170-178,179-189 4fbp d4fbpc_ C:12-25,27-50,170-178,179-189 1fsa d1fsab_ B:12-25,28-50,170-178,179-189 1fta d1ftad_ D:12-25,27-50,170-178,179-189 1frp d1frpb_ B:12-25,27-50,170-178,179-189 1rdx d1rdxb_ B:12-25,27-51,170-178,179-189 1fbp d1fbpa_ A:12-25,27-51,170-178,179-189 1spi d1spid_ D:22-35,36-60,196-204,205-215 1frp d1frpa_ A:12-25,27-50,170-178,179-189 1fpe d1fpea_ A:12-25,27-50,170-178,179-189 1fta d1ftab_ B:12-25,27-50,170-178,179-189 1q9d d1q9da_ A:12-25,28-50,170-178,179-189 1fpg d1fpga_ A:12-25,27-50,170-178,179-189 1fpd d1fpda_ A:12-25,27-50,170-178,179-189 2qvu d2qvub1 B:12-25,28-50,170-178,179-189 1fpf d1fpfa_ A:12-25,27-50,170-178,179-189 1lev d1leva_ A:12-25,27-51,170-178,179-189 1fpg d1fpgb_ B:12-25,28-50,170-178,179-189 1fbh d1fbhb_ B:12-25,27-51,170-178,179-189 1rdz d1rdzb_ B:12-25,28-50,170-178,179-189 1fbc d1fbcb_ B:12-25,27-51,170-178,179-189 4fbp d4fbpd_ D:12-25,27-50,170-178,179-189 1fsa d1fsaa_ A:12-25,28-50,170-178,179-189 1fpl d1fplb_ B:12-25,28-50,170-178,179-189 1q9d d1q9db_ B:12-25,28-50,170-178,179-189 1fpi d1fpib_ B:12-25,28-50,170-178,179-189 1spi d1spia_ A:22-34,38-60,196-204,205-215 1fpd d1fpdb_ B:12-25,28-50,170-178,179-189 1rdz d1rdza_ A:12-25,28-50,170-178,179-189 1fpf d1fpfb_ B:12-25,28-50,170-178,179-189 1fbp d1fbpb_ B:12-25,28-51,170-178,179-189 1fpe d1fpeb_ B:12-25,28-50,170-178,179-189 2fbp d2fbpb_ B:12-25,27-51,170-178,179-189 1fpl d1fpla_ A:12-25,28-50,170-178,179-189 1fpj d1fpja_ A:12-25,28-50,170-178,179-189 1fpi d1fpia_ A:12-25,28-50,170-178,179-189 3fbp d3fbpb_ B:12-25,28-51,170-178,179-189 1rdy d1rdyb_ B:12-25,28-50,170-178,179-189 5fbp d5fbpb_ B:12-25,27-51,170-178,179-189 1lev d1levf_ F:12-25,28-51,170-178,179-189 1fta d1ftaa_ A:12-25,28-50,170-178,179-189 1fbf d1fbfb_ B:12-25,27-51,170-178,179-189 1fta d1ftac_ C:12-25,28-50,170-178,179-189 3fbp d3fbpb_ B:12-25,28-51,131-141,159-168 1fpk d1fpkb_ B:12-25,28-51,170-178,179-189 1fbd d1fbdb_ B:12-25,28-51,170-178,179-189 3fbp d3fbpa_ A:12-25,27-51,170-178,179-189 1fpb d1fpbb_ B:12-25,27-51,170-178,179-189 2fbp d2fbpa_ A:12-25,28-51,170-178,179-189 2fbp d2fbpb_ B:12-25,27-51,131-141,159-168 5fbp d5fbpb_ B:12-25,27-51,131-141,159-168 1fbg d1fbga_ A:12-25,28-51,170-178,179-189 1fbg d1fbgb_ B:12-25,28-51,170-178,179-189 1fbe d1fbeb_ B:12-25,28-51,170-178,179-189 1fbc d1fbcb_ B:12-25,27-51,131-141,159-168 1fpb d1fpba_ A:12-25,28-51,170-178,179-189 5fbp d5fbpa_ A:12-25,28-51,170-178,179-189 1fbh d1fbha_ A:12-25,28-51,170-178,179-189 1fbc d1fbca_ A:12-25,28-51,170-178,179-189 1fbf d1fbfa_ A:12-25,28-51,170-178,179-189 1fbe d1fbea_ A:12-25,28-51,170-178,179-189 1dcu d1dcua_ A:20-32,35-59,195-203,206-214 1dcu d1dcub_ B:20-32,35-59,195-203,206-214 1dbz d1dbzc_ C:20-32,35-59,195-203,206-214 1spi d1spib_ B:22-35,37-60,196-203,207-215 1dcu d1dcud_ D:20-32,35-59,195-203,206-214 1fpb d1fpbb_ B:12-25,27-51,131-141,159-168 1dbz d1dbzd_ D:20-32,35-59,195-203,206-214 1dbz d1dbzb_ B:20-32,35-59,195-203,206-214 1fpk d1fpka_ A:12-25,28-51,170-178,179-189 1fbd d1fbda_ A:12-25,28-51,170-178,179-189 1d9q d1d9qc_ C:20-32,35-59,195-203,206-214 3fbp d3fbpa_ A:12-25,27-51,131-141,159-168 1d9q d1d9qb_ B:20-32,35-59,195-203,206-214 1d9q d1d9qd_ D:20-32,35-59,195-203,206-214 1fpk d1fpkb_ B:12-25,28-51,131-141,159-168 1fbd d1fbdb_ B:12-25,28-51,131-141,159-168 1d9q d1d9qa_ A:20-32,35-59,195-203,206-214 1dbz d1dbza_ A:20-32,35-59,195-203,206-214 1fbe d1fbea_ A:12-25,28-51,131-141,159-168 1fbg d1fbga_ A:12-25,28-51,131-141,159-168 1fbd d1fbda_ A:12-25,28-51,131-141,159-168 1fpk d1fpka_ A:12-25,28-51,131-141,159-168 2fbp d2fbpa_ A:12-25,28-51,131-141,159-168 1fbf d1fbfa_ A:12-25,28-51,131-141,159-168 1fpb d1fpba_ A:12-25,28-51,131-141,159-168 1fbc d1fbca_ A:12-25,28-51,131-141,159-168 5fbp d5fbpa_ A:12-25,28-51,131-141,159-168 1fbh d1fbha_ A:12-25,28-51,131-141,159-168 1spi d1spic_ C:22-35,38-60,196-204,207-214 1dcu d1dcuc_ C:20-32,35-65,195-203,206-214 56. b.59.1 XRCC4, N-terminal domain an HTH motif connects strands 4 and 5 ! XRCC4, N-terminal domain barrel, closed; n=7, S=10; order: 1234765; strands 1 and 5 are parallel to each other 1ik9 d1ik9a1 A:48-60,62-76,92-102,103-113 1fu1 d1fu1b1 B:448-460,462-476,492-502,503-511 1ik9 d1ik9b1 B:48-60,62-76,92-102,103-113 1fu1 d1fu1a1 A:48-60,62-76,92-102,103-111 57. e.24.1 Ribosomal protein L1 Ribosomal protein L1 2 domains: (1) alpha+beta; (2) alpha/beta (interrupts domain 1) 1mzp d1mzpa_ A:4-17,175-195,199-208,209-215 2hgu d2hguc1 C:21-34,181-200,208-217,220-225 1zho d1zhoa1 A:21-34,181-200,208-217,218-225 2hgq d2hgqc1 C:21-34,181-200,208-217,220-225 1ad2 d1ad2a_ A:21-34,181-200,208-217,221-225 2hw8 d2hw8a1 A:21-34,181-200,208-217,218-225 1zho d1zhog1 G:21-34,181-200,208-217,218-225 1cjs d1cjsa_ A:2-17,170-190,195-204,205-211 2hgj d2hgjc1 C:21-34,181-200,208-217,218-225 1zho d1zhoc1 C:21-34,181-200,208-217,218-224 1zho d1zhoe1 E:21-34,181-200,208-217,221-225 1dwu d1dwua_ A:2-18,170-190,195-204,205-211 1i2a d1i2aa_ A:2-18,170-190,195-204,205-211 1dwu d1dwub_ B:2-18,170-190,195-204,205-211 1u63 d1u63c1 C:1-18,170-190,195-204,205-211 1u63 d1u63a1 A:1-18,170-189,195-204,205-211 60. d.110.10 YNR034W-A-like Profilin-like core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha 2grg d2grga1 A:30-37,38-49,55-63,64-73 61. d.135.1 The spindle assembly checkpoint protein mad2 N- and C-termini undergo large conformational rearrangement upon ligand binding ! The spindle assembly checkpoint protein mad2 core: alpha(2)-beta(2)-alpha-beta; mixed sheet: order 213 1klq d1klqa_ A:13-38,60-82,82-93,97-109 1go4 d1go4c_ C:12-36,58-79,80-92,93-107 1go4 d1go4b_ B:12-36,58-79,80-92,93-107 1go4 d1go4a_ A:12-36,58-79,80-92,93-107 2v64 d2v64a1 A:12-36,58-79,80-92,93-107 2v64 d2v64f1 F:12-36,58-79,80-92,93-107 2v64 d2v64c1 C:12-36,58-79,80-92,93-107 1go4 d1go4d_ D:12-36,58-79,80-92,93-107 1s2h d1s2ha_ A:10-36,58-80,81-92,93-107 64. d.163.1 DNA breaking-rejoining enzymes DNA breaking-rejoining enzymes core: alpha3-beta3-alpha4; one side of beta-sheet is exposed 3crx d3crxa2 A:154-171,173-180,192-198,208-214 1pvq d1pvqa2 A:154-171,173-180,192-198,208-214 1q3v d1q3ve2 E:154-171,173-180,191-197,209-214 1ouq d1ouqe2 E:154-171,173-180,191-197,209-214 1nzb d1nzbe2 E:154-171,173-180,191-197,209-214 2hoi d2hoia2 A:154-171,173-180,191-197,209-214 1q3u d1q3ue2 E:154-171,173-180,191-197,209-214 3crx d3crxb2 B:154-171,173-180,191-198,208-214 1drg d1drga2 A:154-171,173-180,191-197,209-214 2hoi d2hoig2 G:154-171,173-180,191-197,209-214 1pvr d1pvrb2 B:154-171,173-180,191-198,208-214 1pvq d1pvqb2 B:154-171,173-180,191-198,208-214 4crx d4crxb2 B:154-171,173-180,191-198,208-214 1pvp d1pvpb2 B:154-171,173-180,191-198,208-214 5crx d5crxb2 B:154-171,173-180,191-198,208-214 2hoi d2hoib2 B:154-171,173-180,191-198,208-214 2hoi d2hoih2 H:154-171,173-180,191-198,208-214 2hof d2hofb2 B:154-171,173-180,191-198,208-214 1kbu d1kbua2 A:154-171,173-180,192-198,208-213 1q3u d1q3ub2 B:154-171,173-180,191-198,208-214 1q3u d1q3uf2 F:154-171,173-180,191-198,208-214 1crx d1crxb2 B:154-171,173-180,191-198,208-214 1a41 d1a41a_ A:112-127,138-148,158-166,170-178 1nzb d1nzbb2 B:154-171,173-180,191-198,208-214 1kbu d1kbub2 B:154-171,173-180,191-198,208-214 1xns d1xnsb2 B:154-171,173-180,191-198,208-214 2crx d2crxb2 B:154-171,173-180,191-198,208-214 1ouq d1ouqb2 B:154-171,173-180,191-198,208-214 1xo0 d1xo0b2 B:154-171,173-180,191-198,208-214 1q3v d1q3vb2 B:154-171,173-180,191-198,208-214 1pvp d1pvpa2 A:154-171,173-180,191-198,208-214 1q3v d1q3vf2 F:154-171,173-180,191-198,208-214 1ouq d1ouqf2 F:154-171,173-180,191-198,208-214 1xns d1xnsa2 A:154-171,173-180,191-198,208-214 1ma7 d1ma7b2 B:154-171,173-180,191-198,208-214 1crx d1crxa2 A:154-171,173-180,191-198,208-214 1f44 d1f44a2 A:154-171,173-180,191-198,208-214 1z1b d1z1bb2 B:196-210,212-219,227-235,236-244 1q3u d1q3ua2 A:154-171,173-180,191-197,209-213 1ouq d1ouqa2 A:154-171,173-180,191-197,209-213 1q3v d1q3va2 A:154-171,173-180,191-197,209-213 1nzb d1nzbf2 F:154-171,173-180,191-198,208-213 1nzb d1nzba2 A:154-171,173-180,191-197,209-213 1z1g d1z1gb2 B:196-210,212-219,227-235,236-244 1p7d d1p7da_ A:196-210,212-219,227-235,236-244 1z1g d1z1gc2 C:196-210,212-219,227-235,236-244 1p7d d1p7db_ B:196-210,212-219,227-235,236-244 1z1g d1z1gd2 D:196-210,212-219,227-235,236-244 1pvr d1pvra2 A:154-171,173-180,191-198,208-214 1z1g d1z1ga2 A:196-210,212-219,227-235,236-244 1z1b d1z1ba2 A:196-210,212-219,227-235,236-244 1xo0 d1xo0a2 A:154-171,173-180,191-198,208-213 1ae9 d1ae9b_ B:196-210,212-219,227-235,236-244 4crx d4crxa2 A:154-171,173-180,191-198,208-213 1ae9 d1ae9a_ A:196-210,212-219,227-235,236-244 66. d.320.1 YojJ-like YojJ-like alpha-beta-X-beta-alpha-beta(2)-alpha-beta(3); 3 layers: a/b/a; 7-stranded mixed beta-sheet, order 2431567; strands 1 and 3 are parallel to each other 2fb5 d2fb5a1 A:42-75,76-91,92-100,179-187 2fb5 d2fb5b1 B:42-75,76-91,92-100,179-187 2fb5 d2fb5c1 C:42-75,76-91,92-100,179-187 2fb5 d2fb5a1 A:42-75,76-91,191-197,198-203 2fb5 d2fb5c1 C:42-75,76-91,191-197,198-203 2fb5 d2fb5b1 B:42-75,76-91,191-197,198-203 74. d.103.1 CytB endotoxin-like CytB endotoxin-like core: beta-alpha(2)-beta-alpha(2)-beta(4); 3 layers: a/b/a 1cby d1cbya_ A:106-123,128-144,163-176,182-197 1vgf d1vgfb_ B:1074-1091,1095-1110,1128-1142,1148-1162 1vgf d1vgfa_ A:74-91,98-110,128-142,148-162 1pp0 d1pp0a_ A:74-91,95-110,128-142,148-162 1pp0 d1pp0d_ D:3074-3091,3095-3110,3127-3142,3148-3162 1pp6 d1pp6c_ C:2074-2091,2095-2110,2128-2142,2148-2162 1pp0 d1pp0b_ B:1074-1091,1095-1110,1127-1142,1148-1162 1vcy d1vcya_ A:74-91,95-110,127-142,148-162 1pp6 d1pp6b_ B:1074-1091,1095-1110,1128-1142,1148-1164 1pp0 d1pp0c_ C:2074-2091,2095-2110,2128-2142,2148-2162 1pp6 d1pp6d_ D:3074-3091,3095-3110,3127-3142,3148-3163 1pp6 d1pp6a_ A:74-91,96-110,128-142,148-164 1pp6 d1pp6e_ E:4077-4091,4095-4110,4128-4142,4148-4162 96. a.2.1 GreA transcript cleavage protein, N-terminal domain Long alpha-hairpin 2 helices; antiparallel hairpin, left-handed twist 2etn d2etnb1 B:8-40,46-72,87-95,144-156 2etn d2etna1 A:8-40,44-72,87-95,144-156 2etn d2etnc1 C:8-40,45-72,87-95,144-156 2f23 d2f23b1 B:8-40,44-72,86-95,145-156 2eul d2eula1 A:8-41,45-72,86-95,144-156 2f23 d2f23a1 A:8-39,44-72,86-95,148-156 2eul d2eulc1 C:8-41,45-72,86-95,144-156 2eul d2eulb1 B:8-41,45-72,86-95,144-156 2eul d2euld1 D:8-41,45-72,86-95,144-156