1. d.122.1 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 8-stranded mixed beta-sheet; 2 layers: alpha/beta 1s14 d1s14b_ B:2031-2050,2053-2061,2064-2071,2198-2206 1s14 d1s14a_ A:1031-1050,1053-1061,1064-1071,1198-1206 1s16 d1s16a2 A:1031-1050,1053-1061,1064-1071,1198-1206 1s16 d1s16b2 B:2031-2050,2053-2061,2064-2072,2198-2206 1ei1 d1ei1b2 B:432-454,457-465,467-475,601-609 1ei1 d1ei1a2 A:32-54,57-65,67-75,201-209 1kij d1kija2 A:31-53,56-64,66-74,201-209 1bkn d1bkna2 A:22-38,40-48,52-59,184-192 1kij d1kijb2 B:31-53,55-64,66-75,201-209 1bkn d1bknb2 B:422-438,440-448,451-459,584-592 1h7u d1h7ua2 A:34-50,52-60,63-71,196-207 1h7u d1h7ub2 B:34-50,52-60,63-71,197-206 1h7s d1h7sa2 A:34-50,52-60,63-71,196-207 1nhi d1nhia2 A:22-38,40-48,52-59,184-192 1ea6 d1ea6a2 A:34-50,52-60,63-71,196-207 1b62 d1b62a2 A:22-38,40-48,52-61,184-192 1b63 d1b63a2 A:22-38,40-48,52-59,184-192 1kzn d1kzna_ A:32-54,57-65,67-76,201-209 1nhh d1nhha2 A:22-38,40-48,52-59,184-192 1aj6 d1aj6a_ A:32-54,57-65,67-75,201-209 1nhj d1nhja2 A:22-38,40-48,52-59,184-192 1qzr d1qzrb2 B:57-79,82-91,92-101,233-238 1ea6 d1ea6b2 B:34-50,52-60,63-71,197-207 1pvg d1pvgb2 B:57-79,82-91,92-101,233-238 1qzr d1qzra2 A:57-79,82-91,92-101,233-238 1pvg d1pvga2 A:57-79,82-91,92-101,233-238 1h7s d1h7sb2 B:34-50,52-60,63-71,197-207 1mx0 d1mx0f3 F:27-51,53-64,68-78,200-207 1mx0 d1mx0c3 C:27-51,53-66,67-77,200-208 1z5c d1z5ca3 A:27-51,53-66,67-77,200-208 1mx0 d1mx0a3 A:27-51,53-66,67-79,200-208 1mx0 d1mx0b3 B:27-51,53-66,67-79,200-208 1z5b d1z5ba3 A:27-51,53-66,67-79,200-208 1mx0 d1mx0e3 E:27-51,53-66,67-79,200-208 2bre d2breb1 B:26-53,63-71,72-80,204-213 1ah8 d1ah8b_ B:26-53,63-71,72-80,204-213 2bre d2brea1 A:26-53,63-71,72-80,204-213 1ah6 d1ah6a_ A:26-53,63-71,72-80,204-208 1ah8 d1ah8a_ A:26-53,63-71,72-80,204-213 1yc3 d1yc3a1 A:40-67,77-85,86-94,217-221 2vcj d2vcja1 A:40-67,77-85,86-94,217-221 2qg0 d2qg0b1 B:40-67,77-85,86-94,217-221 1uyd d1uyda_ A:40-67,77-85,86-94,217-221 2qfo d2qfoa1 A:40-67,77-85,86-94,217-221 1uyi d1uyia_ A:40-67,77-85,86-94,217-221 3d0b d3d0ba1 A:40-67,77-85,86-94,217-221 1yer d1yera_ A:40-67,77-85,86-94,217-221 2fwy d2fwya1 A:40-67,77-85,86-94,217-221 1uy6 d1uy6a_ A:40-67,77-85,86-94,217-221 1uyc d1uyca_ A:40-67,77-85,86-94,217-221 1uye d1uyea_ A:40-67,77-85,86-94,217-221 2qf6 d2qf6c1 C:40-67,77-85,86-94,217-221 2qf6 d2qf6a1 A:40-67,77-85,86-94,217-221 2cct d2ccta1 A:40-67,77-85,86-94,217-221 2qfo d2qfob1 B:40-67,77-85,86-94,217-221 2bz5 d2bz5a1 A:40-67,77-85,86-94,217-221 2qf6 d2qf6b1 B:40-67,77-85,86-94,217-221 2fwz d2fwza1 A:40-67,77-85,86-94,217-221 1uy8 d1uy8a_ A:40-67,77-85,86-94,217-221 2h55 d2h55a1 A:40-67,77-85,86-94,217-221 2qf6 d2qf6d1 D:40-67,77-85,86-94,217-221 2bt0 d2bt0a1 A:40-67,77-85,86-94,217-221 1uym d1uyma_ A:40-67,77-85,86-94,217-221 2cdd d2cdda1 A:40-67,77-85,86-94,217-221 1uy9 d1uy9a_ A:40-67,77-85,86-94,217-221 2qg2 d2qg2a1 A:40-67,77-85,86-94,217-221 2ccs d2ccsa1 A:40-67,77-85,86-94,217-221 1uyg d1uyga_ A:40-67,77-85,86-94,217-221 2vci d2vcia1 A:40-67,77-85,86-94,217-221 1tbw d1tbwa_ A:96-123,133-141,142-150,278-286 1uyl d1uyla_ A:40-67,77-85,86-94,217-221 2qg0 d2qg0a1 A:40-67,77-85,86-94,217-221 2bz5 d2bz5b1 B:40-67,77-85,86-94,217-221 2bsm d2bsma1 A:40-67,77-85,86-94,217-221 2cdd d2cddb1 B:40-67,77-85,86-94,217-221 2bt0 d2bt0b1 B:40-67,77-85,86-94,217-221 1uy7 d1uy7a_ A:40-67,77-85,86-94,217-221 1zw9 d1zw9a1 A:26-53,63-71,72-80,204-208 2jjc d2jjca1 A:40-67,77-85,86-94,217-221 3bm9 d3bm9a1 A:40-67,77-85,86-94,217-221 1osf d1osfa_ A:40-67,77-85,86-94,217-221 1yc4 d1yc4a1 A:40-67,77-85,86-94,217-221 2uwd d2uwda1 A:40-67,77-85,86-94,217-221 2iwu d2iwua1 A:26-53,63-71,72-80,204-208 1yet d1yeta_ A:40-67,77-85,86-94,217-221 1yt1 d1yt1b1 B:96-123,133-141,142-150,278-286 1uyf d1uyfa_ A:40-67,77-85,86-94,217-221 1yes d1yesa_ A:40-67,77-85,86-94,217-221 2hg1 d2hg1a1 A:96-123,133-141,142-150,278-285 1bgq d1bgqa_ A:26-53,63-71,72-80,204-208 1uyh d1uyha_ A:40-67,77-85,86-94,217-221 3bmy d3bmya1 A:40-67,77-85,86-94,217-221 1a4h d1a4ha_ A:26-53,63-71,72-80,204-208 1uyk d1uyka_ A:40-67,77-85,86-94,217-221 2vw5 d2vw5a1 A:26-53,63-71,72-80,204-208 2vw5 d2vw5c1 C:26-53,63-71,72-80,204-208 1u2o d1u2oa_ A:96-123,133-141,142-150,278-286 1yc1 d1yc1a1 A:40-67,77-85,86-94,217-221 2h8m d2h8mb1 B:96-123,133-141,142-150,278-286 2vw5 d2vw5b1 B:26-53,63-71,72-80,204-208 2vw5 d2vw5d1 D:26-53,63-71,72-80,204-208 2fyp d2fypa1 A:96-123,133-141,142-150,278-286 2iwx d2iwxa1 A:26-53,63-71,72-80,204-208 2fxs d2fxsa1 A:26-53,63-71,72-80,204-208 1yt1 d1yt1a1 A:96-123,133-141,142-150,278-286 2byi d2byia1 A:40-67,77-85,86-94,217-221 1mx0 d1mx0d3 D:27-51,54-66,67-77,201-208 2exl d2exla1 A:96-123,133-141,142-150,278-286 1u0z d1u0za1 A:96-123,133-141,142-150,278-285 2gfd d2gfda1 A:96-123,133-141,142-150,278-286 2h8m d2h8ma1 A:96-123,133-141,142-150,278-286 1qye d1qyea_ A:96-123,133-141,142-150,278-286 2hg1 d2hg1b1 B:96-123,133-141,142-150,278-285 1u2o d1u2ob_ B:96-123,133-141,142-150,278-286 1z5b d1z5bb3 B:27-51,54-66,67-77,201-208 2iws d2iwsa1 A:26-53,63-71,72-80,204-208 2gqp d2gqpa1 A:96-123,133-141,142-150,278-285 1u0y d1u0ya1 A:96-123,133-141,142-150,278-286 2fyp d2fypb1 B:96-123,133-141,142-150,278-286 2hch d2hchb1 B:96-123,133-141,142-150,278-285 2hch d2hcha1 A:96-123,133-141,142-150,278-285 2byh d2byha1 A:40-67,77-85,86-94,217-221 1tc6 d1tc6b_ B:96-123,133-141,142-150,278-286 1zwh d1zwha1 A:26-53,63-71,72-80,204-208 2brc d2brca1 A:26-53,63-71,72-80,204-208 1tbw d1tbwb_ B:96-123,133-141,142-150,278-285 2gqp d2gqpb1 B:96-123,133-141,142-150,278-285 1qy5 d1qy5a_ A:96-123,133-141,142-150,278-286 1am1 d1am1a_ A:26-53,63-71,72-80,204-208 1z5c d1z5cb3 B:27-51,54-66,67-77,201-208 1tc6 d1tc6a_ A:96-123,133-141,142-150,278-286 1tc0 d1tc0b_ B:96-123,133-141,142-150,278-286 1amw d1amwa_ A:26-53,63-71,72-80,204-208 1yt2 d1yt2a1 A:96-123,133-141,142-150,278-286 1qy8 d1qy8a_ A:96-123,133-141,142-150,278-286 2hkj d2hkja3 A:27-51,54-66,67-79,201-208 2exl d2exlb1 B:96-123,133-141,142-150,278-286 2gfd d2gfdb1 B:96-123,133-141,142-150,278-286 2vwc d2vwca1 A:26-53,63-71,72-80,204-208 1byq d1byqa_ A:40-67,77-85,86-94,217-221 1z5a d1z5ab3 B:27-51,54-66,67-77,201-208 1ysz d1ysza1 A:96-123,133-141,142-150,278-286 2ccu d2ccua1 A:40-67,77-85,86-96,217-221 1mu5 d1mu5a3 A:27-51,54-66,67-79,201-208 1z59 d1z59a3 A:27-51,54-66,67-77,201-208 1u0z d1u0zb1 B:96-123,133-141,142-150,278-286 1yt0 d1yt0a1 A:96-123,133-141,142-150,278-286 1tc0 d1tc0a_ A:96-123,133-141,142-152,278-286 1z5a d1z5aa3 A:27-51,54-66,67-77,200-208 2. d.139.1 PurM C-terminal domain-like PurM C-terminal domain-like 3 layers: alpha/beta/alpha; partial topological similarity to the ferredoxin-like fold 3d54 d3d54i3 I:240-254,255-262,307-316,318-325 2hs0 d2hs0a3 A:240-254,255-262,307-316,319-325 2hru d2hrua3 A:240-254,255-262,307-316,319-325 1vk3 d1vk3a3 A:240-254,255-262,307-316,319-325 2hs3 d2hs3a3 A:240-254,255-262,306-316,319-325 3d54 d3d54a3 A:240-254,255-261,307-316,318-325 3d54 d3d54e3 E:240-254,255-261,307-316,318-325 1cli d1clic2 C:2251-2261,2264-2270,2326-2336,2340-2344 3c9r d3c9ra2 A:211-224,225-230,278-287,290-294 3c9s d3c9sa2 A:211-224,225-230,278-287,290-294 3c9u d3c9ub2 B:211-224,225-230,278-287,290-294 2z1e d2z1ea2 A:225-239,240-246,299-308,312-319 1cli d1clia2 A:251-261,264-270,326-336,340-344 3c9u d3c9ua2 A:211-224,225-230,278-287,290-294 3c9t d3c9ta2 A:211-224,225-230,278-287,290-294 1vqv d1vqva2 A:211-224,226-230,278-286,290-294 3c9t d3c9tb2 B:211-224,225-230,278-287,290-294 3c9r d3c9rb2 B:211-224,225-230,278-287,290-294 1t3t d1t3ta7 A:888-902,903-909,951-960,963-969 2z1f d2z1fa2 A:225-239,240-247,299-307,312-319 3c9s d3c9sb2 B:211-224,225-230,278-287,290-294 1t3t d1t3ta6 A:506-520,521-527,573-582,585-592 1cli d1clib2 B:1251-1261,1266-1270,1326-1335,1341-1345 2hs4 d2hs4a3 A:240-254,255-261,307-316,319-325 2hry d2hrya3 A:240-254,255-261,306-316,319-325 1cli d1clid2 D:3251-3261,3266-3270,3326-3335,3341-3345 1vqv d1vqvb2 B:211-224,224-230,278-287,289-294 2zau d2zaua2 A:224-237,238-243,321-328,331-336 2yye d2yyeb2 B:224-237,238-243,321-328,331-336 2zod d2zodb2 B:224-237,238-243,321-328,331-336 2yye d2yyea2 A:224-237,238-243,321-328,331-336 2zau d2zaub2 B:224-237,238-243,321-328,331-336 2zau d2zauc2 C:224-237,238-243,321-328,331-336 2zod d2zoda2 A:224-237,238-243,321-328,331-336 5. d.58.10 Acylphosphatase/BLUF domain-like Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 1ulr d1ulra_ A:16-29,30-38,40-48,84-88 1yrx d1yrxb1 B:30-49,50-58,59-68,103-109 1w2i d1w2ia_ A:18-31,32-40,42-51,86-91 1w2i d1w2ib_ B:18-31,32-40,42-51,86-91 1v3z d1v3zb_ B:18-31,32-40,42-51,86-91 2acy d2acya_ A:21-34,35-43,45-54,93-97 1v3z d1v3za_ A:18-31,32-40,42-51,86-91 1yrx d1yrxc1 C:30-49,50-58,59-68,103-109 1x0p d1x0pf1 F:5017-5036,5037-5045,5046-5055,5092-5098 2byc d2bycb1 B:517-537,538-545,547-556,593-598 2byc d2byca1 A:17-37,38-45,47-56,93-98 1yrx d1yrxa1 A:30-49,50-58,59-68,103-109 1x0p d1x0ph1 H:7017-7036,7037-7045,7046-7055,7092-7098 1x0p d1x0pj1 J:9017-9036,9037-9045,9046-9055,9092-9098 1x0p d1x0pa1 A:117-136,137-145,146-155,192-198 1x0p d1x0pe1 E:4017-4036,4037-4045,4046-4055,4092-4098 1gxu d1gxua_ A:21-34,36-43,44-51,87-91 1x0p d1x0pi1 I:8017-8036,8037-8045,8046-8055,8092-8098 1x0p d1x0pd1 D:3017-3036,3037-3045,3046-3055,3092-3098 1x0p d1x0pc1 C:2017-2036,2037-2045,2046-2055,2092-2098 1x0p d1x0pb1 B:1017-1036,1037-1045,1046-1055,1092-1098 1gxt d1gxta_ A:21-34,36-43,44-51,87-91 1x0p d1x0pg1 G:6017-6036,6037-6045,6046-6055,6092-6098 1urr d1urra_ A:21-34,35-43,45-54,93-97 9. e.51.1 Urocanase Urocanase 3 domains; d1: alpha+beta [alpha(2)-beta(3); mixed sheet: 213]; d2: alpha/beta of the NAD(P)-binding Rossmann-fold superfamily (scop_sf 51735, most similar to scop_fa 51883 and scop_fa 51736); d3: alpha+beta of the glutamine synthetase/guanido kinase fold (scop_cf 55930); d1 and d3 form a single beta-sheet 1uwl d1uwlb_ B:61-75,77-85,86-96,100-106 1w1u d1w1ub_ B:61-75,77-85,86-96,100-106 1uwk d1uwkb_ B:61-75,77-85,86-96,100-106 1uwk d1uwka_ A:61-75,77-85,86-96,100-106 1uwl d1uwla_ A:61-75,77-85,86-96,100-106 1w1u d1w1ua_ A:61-75,77-85,86-96,100-106 1x87 d1x87b_ B:56-70,72-80,81-91,95-102 1x87 d1x87a_ A:56-70,72-80,81-91,95-104 11. c.56.6 LigB-like circular permutation of the common fold, most similar to the PNP fold ! Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops 1bou d1boud_ D:206-221,256-269,270-281,291-296 1bou d1boub_ B:206-221,256-269,270-281,291-296 1b4u d1b4ud_ D:206-221,256-269,270-281,291-296 1b4u d1b4ub_ B:206-221,256-269,270-281,291-296 15. b.53.1 Ribosomal protein L25-like Ribosomal protein L25-like barrel, closed; n=6, S=10; complex topology 1d6k d1d6ka_ A:13-24,25-32,37-43,85-94 3bbx d3bbxv1 V:13-24,24-31,37-44,85-94 2aw4 d2aw4v1 V:13-24,24-31,37-44,85-94 2rdo d2rdov1 V:13-24,24-31,37-44,85-94 1vsp d1vspt1 T:14-22,22-31,32-41,82-91 2qov d2qovv1 V:13-24,25-32,37-43,85-94 2qox d2qoxv1 V:13-24,25-32,37-43,85-94 2i2t d2i2tv1 V:13-24,25-32,37-43,85-94 2i2v d2i2vv1 V:13-24,25-32,37-43,85-94 1dfu d1dfup_ P:13-24,25-32,37-43,85-94 2hgq d2hgqy1 Y:10-22,22-31,32-41,84-91 2qbg d2qbgv1 V:13-24,25-32,37-43,85-94 2qba d2qbav1 V:13-24,25-32,37-43,85-93 2qbe d2qbev1 V:13-24,25-32,37-43,85-94 2qbc d2qbcv1 V:13-24,25-32,37-43,85-93 2qp1 d2qp1v1 V:13-24,25-32,37-43,85-94 2qoz d2qozv1 V:13-24,25-32,37-43,85-94 2hgu d2hguy1 Y:10-22,22-31,32-41,84-91 2z4n d2z4nv1 V:13-24,25-32,37-43,85-94 2qbk d2qbkv1 V:13-24,25-32,37-43,85-93 2qbi d2qbiv1 V:13-24,25-32,37-43,85-93 2z4l d2z4lv1 V:13-24,25-32,37-43,85-94 1vs6 d1vs6v1 V:13-24,24-32,37-44,85-94 2qam d2qamv1 V:13-24,24-32,37-44,85-94 2zjp d2zjps1 S:9-17,18-25,28-35,79-84 2qao d2qaov1 V:13-24,24-32,37-44,85-94 2awb d2awbv1 V:13-24,25-32,37-43,85-94 2j28 d2j28v1 V:13-24,25-32,37-43,85-94 2hgj d2hgjy1 Y:11-22,22-31,32-41,84-91 3df4 d3df4v1 V:13-24,25-32,37-43,85-94 3df2 d3df2v1 V:13-24,25-32,37-43,85-94 1vs8 d1vs8v1 V:13-24,25-32,37-43,85-94 2vhm d2vhmv1 V:13-24,24-32,37-44,85-94 2vhn d2vhnv1 V:13-24,24-32,37-44,85-94 2j03 d2j03z1 Z:14-22,22-31,32-41,80-91 2zjr d2zjrs1 S:9-17,18-26,27-35,79-84 2v47 d2v47z1 Z:14-22,22-31,32-41,82-91 2v49 d2v49z1 Z:14-22,23-30,36-40,80-91 2zjq d2zjqs1 S:9-17,18-26,27-35,79-85 3cf5 d3cf5s1 S:9-17,18-26,27-35,78-84 2gyc d2gyct1 T:13-24,25-33,34-43,84-94 2gya d2gyat1 T:13-24,25-33,34-43,83-94 1euy d1euya1 A:292-300,463-473,495-505,536-543 1gts d1gtsa1 A:292-300,464-473,495-504,535-544 1qrs d1qrsa1 A:292-300,464-473,495-504,536-544 19. e.69.1 Poly(A) polymerase catalytic subunit-like Central domain d2 is distantly related to the nucleotidyltransferase superfamily (scop_sf 81301) Poly(A) polymerase catalytic subunit-like 3 domains; d1: all-alpha, contains HhH motif; d2: alpha+beta of nucleotidyltransferase fold (scop_cf 81302); d3: [alpha+beta; beta(3)-alpha-beta(3)-alpha(2); 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 123654, strands 2 and 5 are antiparallel to the rest 2ga9 d2ga9d1 D:162-180,182-186,204-208,272-277 2gaf d2gafd1 D:162-180,182-186,204-208,272-277 20. a.160.1 PAP/OAS1 substrate-binding domain this domain follows the catalytic nucleotidyltransferase domain ! PAP/OAS1 substrate-binding domain core: 5-helical bundle; up-and-down; right-handed twist 2zh6 d2zh6a1 A:184-195,198-204,205-211,214-218 2dr8 d2dr8a1 A:184-195,198-204,205-211,214-218 2zh5 d2zh5a1 A:184-195,198-204,205-211,214-218 2dvi d2dvia1 A:184-195,198-204,205-211,214-218 2zh2 d2zh2a1 A:184-195,198-204,205-211,214-218 2zh3 d2zh3a1 A:184-195,198-204,205-211,214-218 2drb d2drba1 A:184-195,198-204,205-211,214-218 1r8b d1r8ba1 A:184-195,198-204,205-211,214-218 2dra d2draa1 A:184-195,198-204,205-211,214-218 1tfy d1tfyc1 C:184-195,198-204,205-211,214-218 1r89 d1r89a1 A:184-195,198-204,205-211,214-218 2zhb d2zhba1 A:184-195,198-204,205-211,214-218 1tfy d1tfyd1 D:184-195,198-204,205-211,214-218 2zh8 d2zh8a1 A:184-195,198-204,205-211,214-218 2zh1 d2zh1a1 A:184-195,198-204,205-211,214-218 2zh4 d2zh4a1 A:184-195,198-204,205-211,214-218 2zha d2zhaa1 A:184-195,198-204,205-211,214-218 1tfw d1tfwb1 B:184-195,198-204,205-211,214-218 2dr9 d2dr9a1 A:184-195,198-204,205-211,214-218 1sz1 d1sz1a1 A:184-195,198-204,205-211,214-218 1tfw d1tfwc1 C:184-195,198-204,205-211,214-218 2dr7 d2dr7a1 A:184-195,198-204,205-211,214-218 1sz1 d1sz1b1 B:184-195,198-204,205-211,214-218 1ueu d1ueua1 A:184-195,198-204,205-211,214-218 1r8c d1r8ca1 A:184-195,198-204,205-211,214-218 1r8a d1r8aa1 A:184-195,198-204,205-211,214-218 2zh7 d2zh7a1 A:184-195,198-204,205-211,214-218 2zh9 d2zh9a1 A:184-195,198-204,205-211,214-218 1tfy d1tfya1 A:184-195,198-204,205-211,214-218 1tfy d1tfyb1 B:184-195,198-204,205-211,214-218 1uet d1ueta1 A:184-195,198-204,205-211,214-218 2dr5 d2dr5a1 A:184-195,198-204,205-211,214-218 1uev d1ueva1 A:184-195,198-204,205-211,214-218 1tfw d1tfwa1 A:184-195,198-203,206-211,214-218 1tfw d1tfwd1 D:184-195,198-203,206-211,214-218 31. b.3.1 Starch-binding domain-like Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold 1eo5 d1eo5a2 A:235-251,585-595,634-644,677-684 1cxk d1cxka2 A:235-251,585-595,634-644,677-684 1pj9 d1pj9a2 A:235-251,585-595,634-644,677-683 1v3j d1v3ja2 A:235-251,585-595,634-644,677-684 1cxl d1cxla2 A:235-251,585-595,634-644,677-684 1kcl d1kcla2 A:235-251,585-595,634-644,677-683 1ot1 d1ot1a2 A:235-251,585-595,634-644,677-684 1pez d1peza2 A:235-251,585-595,634-644,677-684 1d3c d1d3ca2 A:235-251,585-595,634-644,677-684 1cgw d1cgwa2 A:235-251,585-595,634-644,677-684 1ot2 d1ot2a2 A:235-251,585-595,634-644,677-684 1cxi d1cxia2 A:235-251,585-595,634-644,677-684 1ukq d1ukqa2 A:235-251,585-595,634-644,677-684 1d7f d1d7fa2 A:235-251,585-595,634-644,677-684 1cgx d1cgxa2 A:235-251,585-595,634-644,677-684 1cgv d1cgva2 A:235-251,585-595,634-644,677-684 1v3m d1v3ma2 A:235-251,585-595,634-644,677-684 1cxf d1cxfa2 A:235-251,585-595,634-644,677-683 1ukq d1ukqb2 B:235-251,585-595,634-644,677-684 1uks d1uksa2 A:235-251,585-595,634-644,677-684 1ukt d1ukta2 A:235-251,585-595,634-644,677-684 1ded d1deda2 A:235-251,585-595,634-644,677-684 1v3k d1v3ka2 A:235-251,585-595,634-644,677-684 1d7f d1d7fb2 B:235-251,585-595,634-644,677-684 1v3j d1v3jb2 B:235-251,585-595,634-644,677-684 1i75 d1i75a2 A:235-251,585-595,634-644,677-684 1pam d1pama2 A:235-251,585-595,634-644,677-684 1i75 d1i75b2 B:235-251,585-595,634-644,677-684 1tcm d1tcmb2 B:235-251,585-595,634-644,677-684 1cgy d1cgya2 A:235-251,585-595,634-644,677-683 1v3k d1v3kb2 B:235-251,585-595,634-644,677-684 1eo7 d1eo7a2 A:235-251,585-595,634-644,677-684 7cgt d7cgta2 A:235-251,583-593,633-643,675-683 1cxh d1cxha2 A:235-251,585-595,634-644,677-683 1uks d1uksb2 B:235-251,585-595,634-644,677-684 1cdg d1cdga2 A:235-251,585-595,634-644,677-684 1v3m d1v3mb2 B:235-251,585-595,634-644,677-684 1cxe d1cxea2 A:235-251,585-595,634-644,677-684 1v3l d1v3la2 A:235-251,585-595,634-644,677-684 1pam d1pamb2 B:235-251,585-595,634-644,677-684 1cgt d1cgta2 A:235-251,583-593,633-643,675-683 2dij d2dija2 A:235-251,585-595,634-644,677-684 1ded d1dedb2 B:235-251,585-595,634-644,677-684 2cxg d2cxga2 A:235-251,585-595,634-644,677-684 1dtu d1dtua2 A:235-251,585-595,634-644,677-684 5cgt d5cgta2 A:235-251,583-593,633-643,675-683 4cgt d4cgta2 A:235-251,583-593,633-643,675-683 1kck d1kcka2 A:235-251,585-595,634-644,677-684 1v3l d1v3lb2 B:235-251,585-595,634-644,677-684 3bmv d3bmva2 A:236-252,582-592,631-641,674-681 6cgt d6cgta2 A:235-251,583-593,633-643,675-682 3cgt d3cgta2 A:235-251,583-593,633-643,675-683 1tcm d1tcma2 A:235-251,585-595,634-644,676-683 9cgt d9cgta2 A:235-251,583-593,633-643,675-683 3bmw d3bmwa2 A:236-252,582-592,631-641,674-681 8cgt d8cgta2 A:235-251,583-593,633-643,675-683 1ukt d1uktb2 B:235-251,585-595,634-644,677-683 1ciu d1ciua2 A:236-252,582-592,631-641,674-681 1cgu d1cgua2 A:235-251,583-593,633-643,675-683 1a47 d1a47a2 A:236-252,582-592,631-641,674-681 1qho d1qhoa2 A:234-250,580-590,633-643,676-684 1qhp d1qhpa2 A:234-250,580-590,633-643,676-684 1cyg d1cyga2 A:231-246,578-588,627-637,670-678 1cxk d1cxka2 A:204-222,585-595,634-644,677-684 1cxf d1cxfa2 A:204-222,585-595,634-644,677-683 1pj9 d1pj9a2 A:204-222,585-595,634-644,677-683 1pez d1peza2 A:204-222,585-595,634-644,677-684 1v3j d1v3ja2 A:204-222,585-595,634-644,677-684 1v3m d1v3mb2 B:204-222,585-595,634-644,677-684 1v3m d1v3ma2 A:204-222,585-595,634-644,677-684 1v3j d1v3jb2 B:204-222,585-595,634-644,677-684 1ded d1deda2 A:204-222,585-595,634-644,677-684 1qhp d1qhpa2 A:203-221,580-590,633-643,676-684 1qho d1qhoa2 A:203-221,580-590,633-643,676-684 3bmv d3bmva2 A:205-223,582-592,631-641,674-681 1tcm d1tcma2 A:204-222,585-595,634-644,676-683 3bmw d3bmwa2 A:205-223,582-592,631-641,674-681 1pam d1pama2 A:204-222,585-595,634-644,677-684 1d7f d1d7fa2 A:204-222,585-595,634-644,677-684 1v3k d1v3kb2 B:204-222,585-595,634-644,677-684 1ukq d1ukqa2 A:204-222,585-595,634-644,677-684 1uks d1uksa2 A:204-222,585-595,634-644,677-684 4cgt d4cgta2 A:204-222,583-593,633-643,675-683 6cgt d6cgta2 A:204-222,583-593,633-643,675-682 1cgu d1cgua2 A:204-222,583-593,633-643,675-683 1ukt d1ukta2 A:204-222,585-595,634-644,677-684 1a47 d1a47a2 A:205-223,582-592,631-641,674-681 1ciu d1ciua2 A:205-223,582-592,631-641,674-681 1ukt d1uktb2 B:204-222,585-595,634-644,677-683 5cgt d5cgta2 A:204-222,583-593,633-643,675-683 1cgt d1cgta2 A:204-222,583-593,633-643,675-683 9cgt d9cgta2 A:204-222,583-593,633-643,675-683 7cgt d7cgta2 A:204-222,583-593,633-643,675-683 8cgt d8cgta2 A:204-222,583-593,633-643,675-683 3cgt d3cgta2 A:204-222,583-593,633-643,675-683 36. d.257.1 Hypothetical protein TM0160 Hypothetical protein TM0160 duplication: consists of two beta(3)-alpha(2) structural repeats; single barrel-like beta-sheet 1vjl d1vjla_ A:56-69,69-82,83-94,125-130 1vjl d1vjlb_ B:56-69,69-82,83-94,125-130 43. b.124.1 HesB-like domain HesB-like domain barrel, closed; n=7, S=10; complex topology 1r94 d1r94b_ B:6-21,23-34,36-46,59-66 1r94 d1r94a_ A:6-21,23-34,36-46,59-66 1r95 d1r95b_ B:6-21,23-34,36-46,59-66 1r95 d1r95a_ A:6-21,23-34,36-46,59-66 1s98 d1s98b_ B:6-21,23-34,36-46,59-66 1s98 d1s98a_ A:6-21,24-34,36-46,59-66 46. d.15.13 Nqo1 middle domain-like possibly evolved from 2Fe-2S ferredoxins; contains no iron-sulfur cluster ! beta-Grasp (ubiquitin-like) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143 2fug d2fuga3 A:101-111,248-256,259-268,325-333 2fug d2fug13 1:101-111,248-256,259-268,325-333 2fug d2fugj3 J:101-111,248-256,259-268,325-333 2fug d2fugs3 S:101-111,248-256,259-268,325-333 50. e.58.1 Viral ssDNA binding protein Viral ssDNA binding protein 2 domains; d1: [large alpha+beta domain subdivided into the 'head', 'neck' and 'shoulders' regions; in the 'neck', there is an OB-fold interrupted by large insertions]; d2: [all-alpha, 6 helices; orthogonal array] 1urj d1urja_ A:354-378,912-923,959-967,1021-1031 1urj d1urjb_ B:354-378,912-923,959-967,1021-1031