1. a.56.1 CO dehydrogenase ISP C-domain like contains 2Fe-2S cluster ! CO dehydrogenase ISP C-domain like core: 4 helices, bundle 1jro d1jroe1 E:55-62,103-121,124-133,138-152 1jro d1jrog1 G:55-62,103-121,124-133,138-152 1sb3 d1sb3c1 C:55-60,101-119,122-134,139-155 1jrp d1jrpe1 E:55-62,103-121,124-133,138-153 1jrp d1jrpc1 C:55-62,103-121,124-133,138-153 1jrp d1jrpg1 G:55-62,103-121,124-133,138-153 1jrp d1jrpa1 A:55-62,103-121,124-133,138-153 1jro d1jroc1 C:55-62,103-121,124-133,138-153 1sb3 d1sb3f1 F:55-60,101-119,122-134,139-157 1jro d1jroa1 A:55-62,103-121,124-133,138-153 1rm6 d1rm6f1 F:55-60,103-119,122-134,139-157 1rm6 d1rm6c1 C:55-60,103-119,122-134,139-157 1v97 d1v97b1 B:62-72,114-132,135-146,152-165 1n5x d1n5xa1 A:62-72,114-132,135-147,152-165 1n5x d1n5xb1 B:62-72,114-132,135-147,152-165 1fiq d1fiqa1 A:64-72,114-132,135-144,152-164 3b9j d3b9ja1 A:62-72,114-132,135-146,152-164 1t3q d1t3qd1 D:62-67,108-126,129-141,146-156 1t3q d1t3qa1 A:62-67,108-126,129-141,146-156 1vdv d1vdvb1 B:62-72,114-132,135-144,152-165 1vdv d1vdva1 A:62-72,114-132,135-144,152-164 1ffv d1ffvd1 D:56-61,102-120,123-135,140-157 1ffu d1ffua1 A:56-61,102-120,123-135,140-157 1ffu d1ffud1 D:56-61,102-120,123-135,140-157 1v97 d1v97a1 A:63-72,114-132,135-146,152-165 3b9j d3b9ji1 I:63-72,114-132,135-147,152-164 1ffv d1ffva1 A:56-61,102-114,123-135,140-157 1vlb d1vlba1 A:54-59,101-119,122-134,141-158 1sij d1sija1 A:54-59,101-119,122-134,141-158 1fo4 d1fo4b1 B:63-72,114-132,135-144,152-165 1fo4 d1fo4a1 A:63-72,114-132,135-144,152-165 1dgj d1dgja1 A:54-59,101-119,122-134,141-158 1n62 d1n62a1 A:56-61,103-121,124-133,141-158 1n60 d1n60a1 A:56-61,103-121,124-133,141-158 1zxi d1zxia1 A:56-61,103-121,124-133,141-158 1n61 d1n61a1 A:56-61,103-121,124-133,141-158 1n63 d1n63a1 A:56-61,103-121,124-133,141-158 1n5w d1n5wa1 A:56-61,103-121,124-133,141-158 1n62 d1n62d1 D:56-61,103-121,124-133,141-160 1n60 d1n60d1 D:56-61,103-121,124-133,141-160 1n63 d1n63d1 D:56-61,103-121,124-133,141-160 1n61 d1n61d1 D:56-61,103-121,124-133,141-160 1zxi d1zxid1 D:56-61,103-121,124-133,141-160 1n5w d1n5wd1 D:56-61,103-121,124-133,141-160 2. c.45.1 (Phosphotyrosine protein) phosphatases II share with the family I the common active site structure with a circularly permuted topology ! (Phosphotyrosine protein) phosphatases II core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 1423 1rxd d1rxdc_ C:15-21,107-122,124-137,141-151 1zvr d1zvra2 A:277-286,422-437,441-456,478-495 1rxd d1rxdb_ B:15-21,107-122,124-137,141-151 1rxd d1rxda_ A:15-21,107-122,124-137,141-151 1r6h d1r6ha_ A:19-26,112-126,127-140,144-157 1lw3 d1lw3a2 A:278-286,422-437,441-456,478-495 1lyv d1lyva_ A:253-260,405-422,428-441,447-462 1xxv d1xxvb1 B:253-260,405-422,428-441,447-462 1qz0 d1qz0a_ A:253-260,405-422,428-441,447-462 1xxv d1xxva1 A:253-260,405-422,428-441,447-462 1qz0 d1qz0b_ B:253-260,405-422,428-441,447-462 1pa9 d1pa9a_ A:91-98,243-260,266-279,285-300 3blu d3blua1 A:253-260,405-422,428-441,447-462 1xxp d1xxpa1 A:253-260,405-422,428-441,447-462 1xxp d1xxpb1 B:253-260,405-422,428-441,447-462 2i42 d2i42a1 A:253-260,405-422,428-441,447-462 1yts d1ytsa_ A:253-260,405-422,428-441,447-462 1ytn d1ytna_ A:253-260,405-422,428-441,447-462 1ytw d1ytwa_ A:253-260,405-422,428-441,447-462 1fpz d1fpzb_ B:40-48,142-160,163-176,182-192 1ypt d1ypta_ A:253-260,405-422,428-441,447-462 2q47 d2q47a1 A:65-71,152-169,171-184,188-198 1ypt d1yptb_ B:253-260,405-422,428-441,447-462 1fpz d1fpzd_ D:40-46,142-160,163-176,182-192 1i9t d1i9ta_ A:23-28,131-146,148-161,166-179 1i9s d1i9sa_ A:23-28,131-146,148-161,166-178 2q47 d2q47b1 B:65-71,152-169,171-184,188-198 1xri d1xria_ A:65-71,152-169,171-184,188-198 1xri d1xrib_ B:65-71,152-169,171-184,188-198 1fpz d1fpze_ E:41-48,142-160,163-176,182-192 1fpz d1fpza_ A:41-48,142-160,163-176,182-192 1fq1 d1fq1a_ A:41-46,142-160,163-176,182-192 1fpz d1fpzf_ F:41-46,142-160,163-176,182-192 1fpz d1fpzc_ C:41-46,142-160,163-176,182-192 2oz5 d2oz5a1 A:26-32,162-179,181-196,235-251 1g4w d1g4wr2 R:340-347,483-501,504-517,523-539 1ohe d1ohea2 A:223-228,316-334,336-349,353-364 1ohd d1ohda1 A:55-62,125-145,147-159,178-193 1ohc d1ohca1 A:55-62,125-145,147-159,178-193 2oz5 d2oz5b1 B:26-32,162-179,181-196,235-251 1ywf d1ywfa1 A:26-32,162-179,181-196,235-251 1g4u d1g4us2 S:340-347,483-501,504-517,523-539 1ohe d1ohea1 A:55-62,125-145,147-159,178-193 1d5r d1d5ra2 A:31-37,127-143,147-161,168-185 2b4s d2b4sa1 A:77-85,217-238,245-258,263-281 1ohd d1ohda2 A:223-228,316-334,336-349,353-364 1oeo d1oeox_ X:77-85,217-238,245-258,263-281 1oes d1oesa_ A:77-85,220-238,245-258,263-282 1oeu d1oeua_ A:77-85,217-238,245-258,263-281 1oet d1oeta_ A:77-85,217-238,245-258,263-281 1oev d1oeva_ A:77-85,217-238,245-258,263-281 1t49 d1t49a_ A:77-85,217-238,245-258,263-282 2hnq d2hnqa_ A:77-85,217-239,245-258,263-282 1t4j d1t4ja_ A:77-85,217-238,245-258,263-282 1ohc d1ohca2 A:223-229,316-334,336-349,353-364 1nwl d1nwla_ A:77-85,217-238,245-258,263-283 2cmc d2cmca1 A:77-85,217-238,245-258,263-280 1c84 d1c84a_ A:77-85,217-239,245-258,263-283 1i57 d1i57a_ A:77-86,220-238,245-258,263-285 1ph0 d1ph0a_ A:77-85,217-238,245-258,263-283 1c83 d1c83a_ A:77-85,217-239,245-258,263-283 1gfy d1gfya_ A:77-85,217-239,245-258,263-283 1no6 d1no6a_ A:77-85,217-238,245-258,263-283 1bzh d1bzha_ A:77-85,217-238,245-258,263-283 2cne d2cnea1 A:77-85,217-238,245-258,263-280 2cmb d2cmba1 A:77-85,217-238,245-258,263-280 1sug d1suga_ A:77-85,217-239,245-258,263-283 1l8g d1l8ga_ A:77-85,217-239,245-258,263-283 2azr d2azra1 A:77-85,217-239,245-258,263-283 1pa1 d1pa1a_ A:577-585,717-739,745-758,763-783 1q1m d1q1ma_ A:77-85,217-239,245-258,263-283 2f6z d2f6za1 A:77-85,217-239,245-258,263-283 1lar d1lara1 A:1393-1398,1524-1546,1549-1562,1567-1585 2f70 d2f70a1 A:77-85,217-239,245-258,263-283 1l8k d1l8ka_ A:79-87,221-240,243-256,261-277 2cm8 d2cm8a1 A:77-85,217-239,245-258,263-283 1kak d1kaka_ A:78-85,217-239,245-258,263-283 1c86 d1c86a_ A:77-86,217-239,245-258,263-283 2cng d2cnga1 A:77-85,217-239,245-258,263-283 2f6v d2f6va1 A:77-85,217-239,245-258,263-283 1c87 d1c87a_ A:77-85,217-239,245-258,263-283 2f71 d2f71a1 A:77-85,217-239,245-258,263-283 2f6t d2f6ta1 A:77-85,217-239,245-258,263-283 2bgd d2bgda1 A:77-85,217-239,245-258,263-283 2f6y d2f6ya1 A:77-85,217-239,245-258,263-283 1pyn d1pyna_ A:77-85,217-238,245-258,263-283 1onz d1onza_ A:77-85,217-238,245-258,263-283 2b07 d2b07a1 A:77-85,217-239,245-258,263-283 1ecv d1ecva_ A:77-85,217-239,245-258,263-283 1eeo d1eeoa_ A:78-85,217-238,245-258,263-283 2h4g d2h4ga1 A:77-85,217-239,245-258,263-283 1a5y d1a5ya_ A:77-85,217-239,245-258,263-283 1xbo d1xboa_ A:77-85,217-239,245-258,263-283 2hb1 d2hb1a1 A:77-85,217-239,245-258,263-283 1pty d1ptya_ A:77-85,217-239,245-258,263-283 1nny d1nnya_ A:77-85,217-238,245-258,263-283 1nwe d1nwea_ A:77-85,217-239,245-258,263-283 1nl9 d1nl9a_ A:77-85,217-238,245-258,263-283 2cnf d2cnfa1 A:77-85,217-238,245-258,263-283 1c88 d1c88a_ A:77-85,217-239,245-258,263-283 1wax d1waxa1 A:77-85,217-239,245-258,263-283 2cma d2cmaa1 A:77-85,217-238,245-258,263-283 1lar d1larb1 B:1393-1398,1524-1546,1549-1562,1567-1585 1bzj d1bzja_ A:77-85,217-239,245-258,263-283 2cm7 d2cm7a1 A:78-85,217-238,245-258,263-283 1g7f d1g7fa_ A:77-85,217-239,245-258,263-283 1aax d1aaxa_ A:77-86,217-239,245-258,263-283 1ptv d1ptva_ A:77-85,217-239,245-258,263-283 2f6w d2f6wa1 A:77-85,217-239,245-258,263-283 2h4k d2h4ka1 A:77-85,217-239,245-258,263-283 2cm3 d2cm3b1 B:77-85,217-239,245-258,263-280 1ptu d1ptua_ A:77-85,217-239,245-258,263-283 1nz7 d1nz7a_ A:77-85,217-239,245-258,263-283 2bge d2bgea1 A:77-85,217-239,245-258,263-283 1c85 d1c85a_ A:77-85,217-239,245-258,263-283 1jf7 d1jf7a_ A:78-85,217-239,245-258,263-282 2cm2 d2cm2a1 A:77-85,217-239,245-258,263-282 1g7g d1g7ga_ A:77-85,217-239,245-258,263-283 2cnh d2cnha1 A:77-85,217-238,245-258,263-283 1t48 d1t48a_ A:77-85,217-239,245-258,263-283 1qxk d1qxka_ A:77-85,217-238,245-258,263-283 1lqf d1lqfc_ C:577-585,717-738,745-758,763-783 2cni d2cnia1 A:77-85,217-238,245-258,263-283 1ony d1onya_ A:77-85,217-239,245-258,263-283 1een d1eena_ A:77-85,217-238,245-258,263-283 1pxh d1pxha_ A:77-85,217-239,245-258,263-283 1ptt d1ptta_ A:77-85,217-239,245-258,263-283 2cm3 d2cm3a1 A:77-85,217-239,245-258,263-280 1kav d1kava_ A:77-85,217-239,245-258,263-283 1g1f d1g1fa_ A:77-85,217-239,245-258,263-283 1q6s d1q6sb_ B:1077-1085,1217-1239,1245-1258,1263-1284 1p15 d1p15a_ A:594-600,726-748,751-764,769-786 1g1g d1g1ga_ A:77-85,217-239,245-258,263-283 1rpm d1rpmb_ B:967-973,1097-1119,1122-1135,1140-1156 1rpm d1rpma_ A:967-973,1097-1119,1122-1135,1140-1156 1jln d1jlna_ A:353-358,482-504,507-520,525-543 1lqf d1lqfd_ D:577-585,717-739,745-758,763-783 1q6p d1q6pb_ B:1077-1085,1217-1239,1245-1258,1263-1283 1q6t d1q6tb_ B:1077-1085,1217-1239,1245-1258,1263-1283 1lqf d1lqfa_ A:577-585,717-739,745-758,763-783 1lqf d1lqfb_ B:577-585,717-739,745-758,763-783 1bzc d1bzca_ A:77-85,217-238,245-258,263-283 1q6n d1q6nb_ B:1077-1085,1217-1239,1245-1258,1263-1283 1q6p d1q6pa_ A:577-585,717-739,745-758,763-783 1q6t d1q6ta_ A:577-585,717-739,745-758,763-783 1p15 d1p15b_ B:594-600,726-748,751-764,769-788 1g1h d1g1ha_ A:77-85,217-239,245-258,263-283 1jf7 d1jf7b_ B:77-85,217-239,245-258,263-282 1q6n d1q6na_ A:577-585,717-739,745-758,763-784 1q6m d1q6ma_ A:77-85,217-239,245-258,263-284 1q6s d1q6sa_ A:577-585,717-739,745-758,763-784 1lar d1larb2 B:1682-1687,1815-1837,1840-1853,1858-1876 1u26 d1u26b_ B:90-96,243-261,264-276,291-316 1wch d1wcha_ A:2274-2283,2410-2431,2435-2448,2453-2477 1u25 d1u25a_ A:90-96,243-261,264-276,291-316 3d1h d3d1hb1 B:101-107,254-272,275-287,302-327 2psz d2pszb1 B:101-107,254-272,275-287,302-327 3d1q d3d1qb1 B:101-107,254-272,275-287,302-327 3d1o d3d1ob1 B:101-107,254-272,275-287,302-327 1u25 d1u25b_ B:90-96,243-261,264-276,291-316 1u26 d1u26a_ A:90-96,243-261,264-276,288-316 2pt0 d2pt0a1 A:101-107,256-272,275-287,302-327 1fpr d1fpra_ A:322-328,458-479,485-498,503-526 1lar d1lara2 A:1682-1688,1815-1837,1840-1853,1858-1876 1q6j d1q6ja_ A:77-85,217-239,245-258,263-285 3d1h d3d1ha1 A:101-107,254-272,275-287,299-330 3d1q d3d1qa1 A:101-107,254-272,275-287,299-330 1gwz d1gwza_ A:322-327,457-479,485-498,503-526 3d1o d3d1oa1 A:101-107,254-272,275-287,299-330 2psz d2psza1 A:101-107,254-272,275-287,299-330 2shp d2shpb1 B:326-332,461-483,489-502,507-525 2shp d2shpa1 A:326-332,461-483,489-502,507-525 1u24 d1u24a_ A:90-96,245-261,264-276,288-316 1u25 d1u25c_ C:90-96,243-261,264-276,288-319 2pt0 d2pt0b1 B:101-107,256-272,275-287,299-330 1u24 d1u24b_ B:90-96,245-261,264-276,288-319 4. d.148.1 Hect, E3 ligase catalytic domain Hect, E3 ligase catalytic domain consists of two alpha+beta domains; the N-terminal domain is array of helices and beta-hairpins; the C-terminal domain is an a/b sandwich with one left-handed beta-alpha(n)-beta unit; conformational flexibility of domain orientation 1c4z d1c4zc_ C:499-505,508-525,544-561,585-603 1d5f d1d5fb_ B:499-505,508-525,544-561,585-603 1d5f d1d5fa_ A:499-505,508-525,544-561,585-603 1d5f d1d5fc_ C:499-505,508-525,544-562,585-603 1c4z d1c4za_ A:499-505,508-524,544-561,585-603 1c4z d1c4zb_ B:499-505,508-525,544-561,585-603 1nd7 d1nd7a_ A:566-573,575-588,608-626,652-671 5. a.102.1 Six-hairpin glycosidases alpha/alpha toroid multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies 1ulv d1ulva1 A:561-566,591-606,608-621,653-670 1ug9 d1ug9a1 A:561-566,591-606,608-620,653-670 1lf6 d1lf6b1 B:569-574,599-614,616-629,652-669 1lf9 d1lf9b1 B:569-574,599-614,616-629,652-669 1lf6 d1lf6a1 A:569-574,599-614,616-629,652-669 1lf9 d1lf9a1 A:569-574,599-614,616-629,652-669 1wu6 d1wu6a1 A:55-60,68-83,84-100,126-145 1wu5 d1wu5a1 A:55-60,68-83,84-100,126-145 1wu4 d1wu4a1 A:55-60,68-83,84-100,126-145 2a8z d2a8za1 A:61-65,76-91,92-108,142-161 1lf9 d1lf9b1 B:563-568,599-614,616-629,652-669 1lf9 d1lf9a1 A:563-568,599-614,616-629,652-669 1lf6 d1lf6a1 A:563-568,599-614,616-629,652-669 2p0v d2p0vb1 B:95-100,107-122,125-147,178-197 2p0v d2p0va1 A:95-100,107-122,125-147,178-197 1l2a d1l2ad_ D:63-67,85-104,105-122,253-275 1l1y d1l1yb_ B:63-67,85-104,105-122,253-275 1l2a d1l2aa_ A:63-67,85-104,105-122,253-275 1lf6 d1lf6b1 B:563-568,599-614,616-629,652-669 1l2a d1l2af_ F:63-67,85-104,105-122,253-275 1l2a d1l2ab_ B:63-67,85-104,105-122,253-275 1l1y d1l1yf_ F:63-67,85-104,105-122,253-275 1l1y d1l1yd_ D:63-67,85-104,105-122,253-275 1l2a d1l2ae_ E:63-67,85-104,105-122,253-275 1l2a d1l2ac_ C:63-67,85-104,105-122,253-275 1l1y d1l1yc_ C:63-67,85-104,105-122,253-275 1l1y d1l1ye_ E:63-67,85-104,105-122,253-275 1l1y d1l1ya_ A:63-67,85-104,105-122,253-275 2nvp d2nvpa1 A:49-55,62-77,80-102,133-152 1rq5 d1rq5a1 A:609-613,635-661,679-699,700-716 1ut9 d1ut9a1 A:609-613,635-661,679-699,700-716 1v7w d1v7wa1 A:546-550,576-587,590-606,642-657 1v7v d1v7va1 A:546-550,576-587,590-606,642-657 1v7x d1v7xa1 A:546-550,576-587,590-606,642-657 2afa d2afac1 C:298-303,317-336,337-356,383-393 2fuz d2fuza1 A:23-28,41-59,60-81,86-105 1vd5 d1vd5a_ A:23-28,41-59,60-81,86-97 2d5j d2d5jb1 B:23-28,41-59,60-81,86-105 2d5j d2d5ja1 A:23-28,41-59,60-81,86-105 2afa d2afaf1 F:298-303,317-336,337-356,383-393 2afa d2afad1 D:298-303,317-336,337-356,383-393 2afa d2afae1 E:298-303,317-336,337-356,383-393 2afa d2afaa1 A:298-303,317-336,337-356,383-393 2jg0 d2jg0a1 A:264-268,334-356,357-380,402-412 2jf4 d2jf4a1 A:264-268,334-356,357-380,402-412 1ayx d1ayxa_ A:49-53,67-86,88-109,143-166 1l1y d1l1yb_ B:58-62,85-104,105-122,253-275 1f9o d1f9oa_ A:449-453,494-513,514-533,609-628 1l1y d1l1yd_ D:58-62,85-104,105-122,253-275 1l1y d1l1ye_ E:58-62,85-104,105-122,253-275 1fce d1fcea_ A:449-453,494-513,514-533,609-628 1l2a d1l2aa_ A:58-62,85-104,105-122,253-275 1l2a d1l2af_ F:58-62,85-104,105-122,253-275 1fbo d1fboa_ A:449-453,494-513,514-533,609-628 1l2a d1l2ad_ D:58-62,85-104,105-122,253-275 1fae d1faea_ A:449-453,494-513,514-533,609-628 1g9j d1g9ja_ A:449-453,494-513,514-533,609-628 1f9d d1f9da_ A:449-453,494-513,514-533,609-628 2qno d2qnoa1 A:449-453,494-513,514-533,609-628 1fbw d1fbwa_ A:449-453,494-513,514-533,609-628 1g9g d1g9ga_ A:449-453,494-513,514-533,609-628 1ga2 d1ga2b1 B:298-302,312-331,334-354,426-441 1g87 d1g87a1 A:298-302,312-331,334-354,426-441 1l2a d1l2ac_ C:58-62,85-104,105-122,253-275 1g87 d1g87b1 B:298-302,312-331,334-354,426-441 1k72 d1k72a1 A:298-302,312-331,334-354,426-441 1kfg d1kfgb1 B:298-302,312-331,334-354,426-441 1ga2 d1ga2a1 A:298-302,312-331,334-354,426-441 1kfg d1kfga1 A:298-302,312-331,334-354,426-441 2d8l d2d8la1 A:179-183,211-230,233-254,276-294 1k72 d1k72b1 B:298-302,312-331,334-354,426-441 1nc5 d1nc5a_ A:179-183,211-230,233-254,276-294 1js4 d1js4b1 B:300-304,314-334,335-355,430-445 1tf4 d1tf4b1 B:300-304,314-334,335-355,431-445 1ia7 d1ia7a_ A:291-295,305-325,326-342,412-431 2a8z d2a8za1 A:49-56,76-91,92-108,142-161 1js4 d1js4a1 A:300-304,314-334,335-355,431-445 1vd5 d1vd5a_ A:34-38,41-59,60-81,96-105 1tf4 d1tf4a1 A:300-304,314-334,335-355,431-445 4tf4 d4tf4a1 A:300-304,314-334,335-355,430-445 1ia6 d1ia6a_ A:291-295,305-325,326-342,412-431 1l1y d1l1yf_ F:477-481,520-542,546-565,643-662 1h13 d1h13a_ A:49-56,76-91,92-108,142-161 1fp3 d1fp3b_ B:30-34,54-73,77-96,120-139 1xwq d1xwqa1 A:49-56,76-91,92-108,142-161 1xw2 d1xw2a1 A:49-56,76-91,92-108,142-161 2b4f d2b4fa1 A:49-56,76-91,92-108,142-161 1l2a d1l2af_ F:477-481,520-542,546-565,643-662 1l1y d1l1yc_ C:477-481,520-542,546-565,643-662 1h12 d1h12a_ A:49-56,76-91,92-108,142-161 1h14 d1h14a_ A:49-56,76-91,92-108,142-161 1l1y d1l1yd_ D:477-481,520-542,546-565,643-662 1xwt d1xwta1 A:49-56,76-91,92-108,142-161 1l1y d1l1ya_ A:477-481,520-542,546-565,643-662 1l2a d1l2ac_ C:477-481,520-542,546-565,643-662 1l2a d1l2ad_ D:477-481,520-542,546-565,643-662 1l1y d1l1ye_ E:477-481,520-543,546-565,643-662 1l2a d1l2aa_ A:477-481,520-542,546-565,643-662 1l1y d1l1yb_ B:477-481,520-543,546-565,643-662 1l2a d1l2ae_ E:477-481,520-543,546-565,643-662 1l2a d1l2ab_ B:477-481,520-543,546-565,643-662 2fuz d2fuza1 A:34-38,41-59,60-81,86-105 1vd5 d1vd5a_ A:34-38,41-59,60-81,86-97 3tf4 d3tf4a1 A:300-304,314-334,335-355,426-445 1wu5 d1wu5a1 A:182-186,200-211,212-235,261-279 1wu4 d1wu4a1 A:182-186,200-211,212-235,261-279 2jg0 d2jg0a1 A:256-261,334-356,357-380,402-412 1wu6 d1wu6a1 A:182-186,200-211,212-235,261-279 2jf4 d2jf4a1 A:256-261,334-356,357-380,402-412 1v7v d1v7va1 A:551-560,576-587,590-606,642-657 1v7w d1v7wa1 A:551-560,576-587,590-606,642-657 1kwf d1kwfa_ A:196-200,217-229,230-252,276-294 1v7x d1v7xa1 A:551-560,576-587,590-606,642-657 1is9 d1is9a_ A:164-168,185-197,198-220,244-262 1cem d1cema_ A:196-200,217-229,230-252,276-294 1fp3 d1fp3b_ B:175-179,203-218,245-264,265-285 6. d.58.39 Glutamyl tRNA-reductase catalytic, N-terminal domain common fold is elaborated with additional secondary structures ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 1gpj d1gpja3 A:49-57,77-91,99-117,120-142 7. a.117.1 Ras GEF Ras GEF multihelical 2ii0 d2ii0a1 A:600-605,605-615,620-636,636-650 1nvx d1nvxs_ S:600-605,605-615,620-636,636-650 1bkd d1bkds_ S:600-605,605-615,620-636,636-650 1xdv d1xdvb2 B:600-605,605-615,620-636,636-650 1xdv d1xdva2 A:600-605,605-615,620-636,636-650 1nvw d1nvws_ S:600-605,605-615,620-636,636-650 1nvu d1nvus_ S:600-605,605-615,620-636,636-650 1nvv d1nvvs_ S:600-605,605-615,620-636,636-650 1xd4 d1xd4b2 B:600-605,605-615,620-636,636-650 11. d.207.1 Thymidylate synthase-complementing protein Thy1 Thymidylate synthase-complementing protein Thy1 complex alpha+beta fold; contains antiparallel 5-stranded beta-sheet: order 12354 1kq4 d1kq4c_ C:155-163,163-177,180-199,198-210 1o25 d1o25c_ C:155-163,163-177,180-199,198-210 1o27 d1o27c_ C:155-163,163-177,180-199,198-210 1o24 d1o24b_ B:155-163,163-177,180-199,198-210 1o25 d1o25d_ D:155-163,163-177,180-199,198-210 1o25 d1o25b_ B:155-163,163-177,180-199,198-210 1o28 d1o28b_ B:155-163,163-177,180-199,198-210 1o24 d1o24c_ C:155-163,163-177,180-199,198-210 1kq4 d1kq4a_ A:155-163,163-176,180-199,198-210 1o2a d1o2ad_ D:155-163,163-177,180-199,198-210 1o27 d1o27d_ D:155-163,163-177,180-199,198-210 1kq4 d1kq4b_ B:155-163,163-177,180-199,198-210 1o27 d1o27b_ B:155-163,163-177,180-199,198-210 1o29 d1o29c_ C:155-163,163-177,180-199,198-210 1o2a d1o2ac_ C:155-163,163-176,180-199,198-210 1o29 d1o29d_ D:155-163,163-177,180-199,198-210 1o24 d1o24a_ A:155-163,163-176,180-199,198-210 1o2a d1o2aa_ A:155-163,163-176,180-199,198-210 1o26 d1o26a_ A:155-163,163-177,180-199,198-210 1o2b d1o2bc_ C:155-163,163-177,180-199,198-210 1o26 d1o26c_ C:155-163,163-177,180-199,198-210 1o29 d1o29b_ B:155-163,163-177,180-199,198-210 1o25 d1o25a_ A:155-163,163-176,180-199,198-210 1o26 d1o26b_ B:155-163,163-177,180-199,198-210 1o29 d1o29a_ A:155-163,163-177,180-199,198-210 1o26 d1o26d_ D:155-163,163-177,180-199,198-210 1o28 d1o28d_ D:155-163,163-176,180-199,198-210 1kq4 d1kq4d_ D:155-163,163-176,180-199,198-210 1o24 d1o24d_ D:155-163,163-176,180-199,198-210 1o2a d1o2ab_ B:155-163,163-176,180-199,198-210 1o28 d1o28c_ C:155-163,163-176,180-199,198-210 1o2b d1o2ba_ A:155-163,163-177,180-199,198-210 1o2b d1o2bd_ D:155-163,163-177,180-199,198-210 1o27 d1o27a_ A:155-163,163-176,180-199,198-210 1o2b d1o2bb_ B:155-163,163-177,180-199,198-210 1o28 d1o28a_ A:155-163,163-176,180-199,198-210 14. a.102.5 Family 10 polysaccharide lyase alpha/alpha toroid multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies 1r76 d1r76a_ A:287-291,315-329,333-351,415-432 1gxo d1gxoa_ A:499-503,532-547,549-565,634-647 1gxm d1gxmb_ B:499-503,532-547,549-565,634-647 1gxn d1gxna_ A:499-503,532-547,549-565,634-647 1gxm d1gxma_ A:499-503,532-547,549-565,634-647 1r76 d1r76a_ A:282-286,315-329,333-351,415-432 15. d.75.1 tRNA-intron endonuclease N-terminal domain-like MutS N-terminal domain-like beta(2)-alpha-beta(2)-alpha-beta(2); 2 layers, alpha/beta 1a79 d1a79a2 A:9-16,46-57,70-83,84-99 1a79 d1a79c2 C:9-16,46-57,70-83,84-99 1a79 d1a79b2 B:9-16,46-57,70-83,84-99 1a79 d1a79d2 D:9-16,46-57,70-83,84-99 2gjw d2gjwd4 D:154-158,185-196,204-217,218-233 2gjw d2gjwa4 A:154-158,185-196,204-217,218-233 1r11 d1r11b4 B:148-155,182-193,201-214,215-230 1r0v d1r0vd3 D:148-155,182-193,201-214,215-230 2gjw d2gjwb4 B:150-157,184-195,203-216,217-232 1r11 d1r11a4 A:148-155,182-193,201-214,215-230 1r0v d1r0va3 A:148-155,182-193,201-214,215-230 2gjw d2gjwc4 C:150-157,184-195,203-216,217-232 1r0v d1r0vc3 C:148-155,182-193,201-214,215-230 1r0v d1r0vb3 B:148-155,182-193,201-214,215-230 1rlv d1rlvb4 B:148-155,182-193,201-214,215-230 1rlv d1rlva4 A:148-155,182-193,201-214,215-230 36. a.264.1 Duffy binding domain-like Duffy binding domain-like consist of two subdomains, each containing a three-helical bundle 1zrl d1zrla1 A:22-28,174-203,212-245,265-282 1zro d1zroa1 A:23-28,174-194,212-245,265-282 1zro d1zrob1 B:23-28,174-194,212-245,265-282 1zrl d1zrla2 A:330-334,480-508,515-550,562-572 1zro d1zroa2 A:330-334,480-508,515-550,562-572 1zro d1zrob2 B:330-334,480-508,515-550,562-572 40. c.86.1 Phosphoglycerate kinase Phosphoglycerate kinase consists of two non-similar domains, 3 layers (a/b/a) each ! Domain 1 has parallel beta-sheet of 6 strands, order 342156 ! Domain 2 has parallel beta-sheet of 6 strands, order 321456 1php d1phpa_ A:139-145,153-164,169-185,385-392 1ltk d1ltkc_ C:158-164,172-179,187-203,407-414 1ltk d1ltkb_ B:158-164,172-179,187-203,407-414 1ltk d1ltka_ A:158-164,172-179,187-203,407-414 3pgk d3pgka_ A:156-162,170-177,184-200,405-412 1v6s d1v6sb_ B:136-142,150-161,166-181,382-390 16pk d16pka_ A:160-166,174-185,191-206,410-417 1v6s d1v6sa_ A:136-142,150-161,166-182,382-390 13pk d13pkd_ D:160-166,174-185,191-207,410-417 1vpe d1vpea_ A:139-145,153-164,169-185,388-395