2. e.1.1 Serpins Serpins contains a cluster of helices and a beta-sandwich 1att d1atta_ A:80-95,116-133,139-151,156-168 1oo8 d1oo8a_ A:53-68,88-105,112-122,127-139 1oyh d1oyhi_ I:79-94,115-134,140-150,155-167 1br8 d1br8i_ I:79-94,115-132,138-150,155-167 1dzg d1dzgi_ I:79-94,115-132,138-150,155-167 1ath d1atha_ A:79-94,115-132,138-149,155-167 1lk6 d1lk6i_ I:79-94,115-132,138-150,155-167 1e04 d1e04i_ I:79-94,115-132,138-150,155-167 2hij d2hijl1 L:79-94,115-133,138-150,155-167 1oyh d1oyhl_ L:79-94,115-133,138-150,155-167 2beh d2behl1 L:79-94,115-133,138-150,155-167 2beh d2behi1 I:79-94,115-134,139-150,155-167 1att d1attb_ B:80-95,116-133,139-151,156-168 1r1l d1r1li_ I:79-94,115-132,138-150,155-167 2znh d2znhb1 B:79-94,115-132,138-150,155-167 1jvq d1jvqi_ I:79-94,115-132,138-150,155-167 4caa d4caa.1 A:53-68,88-105,110-122,127-139 2ant d2anti_ I:79-94,115-132,138-150,155-167 2ant d2antl_ L:79-94,115-133,138-150,155-167 1dzg d1dzgl_ L:79-94,115-133,138-150,155-167 2hij d2hiji1 I:79-94,115-132,138-150,155-167 1lk6 d1lk6l_ L:79-94,115-133,138-150,155-167 1jvq d1jvql_ L:79-94,115-133,138-150,155-167 1lq8 d1lq8.4 G:49-64,81-99,105-117,123-135 1br8 d1br8l_ L:79-94,115-133,138-150,155-167 1r1l d1r1ll_ L:79-94,115-133,138-150,155-167 1dzh d1dzhi_ I:79-94,115-133,138-150,155-167 1e04 d1e04l_ L:79-94,115-133,137-150,155-167 1dzh d1dzhl_ L:79-94,116-133,138-150,155-167 2b4x d2b4xl1 L:79-94,115-133,138-150,155-167 2ach d2ach.1 A:53-68,88-105,109-121,127-139 1d5s d1d5s.1 A:53-68,88-106,110-121,127-139 1iz2 d1iz2a_ A:53-68,88-105,110-121,127-139 1jmo d1jmoa_ A:135-150,175-194,197-208,214-226 8api d8api.1 A:53-68,88-105,110-121,127-139 2b4x d2b4xi1 I:79-94,115-132,138-150,155-167 2d26 d2d26a1 A:53-68,88-106,110-121,127-139 1jmj d1jmja_ A:135-150,175-192,197-208,214-226 2znh d2znha1 A:79-94,116-132,138-150,155-167 1mtp d1mtp.1 A:35-50,65-78,82-92,98-109 1qmb d1qmb.1 A:53-68,88-106,110-122,127-139 1psi d1psia_ A:53-68,88-106,111-122,127-139 1as4 d1as4.1 A:53-68,88-105,110-122,127-139 1qmn d1qmna_ A:53-68,88-105,110-121,127-139 1ant d1antl_ L:79-94,116-133,138-150,155-167 7api d7api.1 A:53-68,88-105,110-122,127-139 9api d9api.1 A:53-68,88-105,110-122,127-139 1jmj d1jmjb_ B:135-150,175-192,197-208,214-226 1ath d1athb_ B:79-94,116-132,138-150,155-167 1kct d1kcta_ A:53-69,88-105,110-122,127-139 1ant d1anti_ I:79-94,116-131,138-150,155-167 1ezx d1ezx.1 A:53-68,88-106,110-122,127-139 1k9o d1k9oi_ I:46-62,77-92,97-110,115-127 1sng d1snga_ A:35-50,65-78,82-93,98-109 1lq8 d1lq8.3 E:49-64,84-99,105-118,123-135 1lq8 d1lq8.1 A:49-64,84-99,105-118,123-135 1sek d1seka_ A:46-62,77-92,97-110,115-127 1e05 d1e05l_ L:79-94,116-134,137-150,155-167 3caa d3caa.1 A:53-68,88-105,109-122,127-139 1e05 d1e05i_ I:79-94,117-132,138-150,155-167 1oph d1opha_ A:53-69,88-105,111-122,127-139 1lq8 d1lq8.2 C:49-64,84-99,105-118,123-135 1hp7 d1hp7a_ A:53-69,88-106,110-122,127-139 1by7 d1by7a_ A:31-46,99-115,122-133,138-150 1qlp d1qlpa_ A:53-69,88-105,111-122,127-139 1atu d1atua_ A:53-69,88-105,112-122,128-136 1sr5 d1sr5a_ A:79-94,118-138,138-150,155-167 1nq9 d1nq9l_ L:79-94,118-132,138-150,155-167 1hle d1hle.1 A:53-68,91-105,110-122,127-139 1jrr d1jrra_ A:31-46,102-116,121-133,138-150 1e03 d1e03l_ L:79-94,118-133,138-150,155-167 1azx d1azxi_ I:79-94,118-138,138-150,155-167 1azx d1azxl_ L:79-94,118-133,138-150,155-167 1oc0 d1oc0a_ A:35-50,68-84,90-101,108-118 3evj d3evjl1 L:79-94,118-132,138-150,155-167 2gd4 d2gd4i1 I:79-94,118-139,138-150,155-167 2gd4 d2gd4c1 C:79-94,118-139,138-150,155-167 1b3k d1b3ka_ A:35-50,68-84,90-100,108-118 1b3k d1b3kc_ C:35-50,68-84,90-100,108-118 3evj d3evji1 I:79-94,118-134,138-150,155-167 1b3k d1b3kb_ B:35-50,68-84,90-100,108-118 1b3k d1b3kd_ D:35-50,68-84,90-100,108-118 1e03 d1e03i_ I:79-94,118-138,137-150,155-167 1nq9 d1nq9i_ I:79-94,118-133,138-150,155-167 1tb6 d1tb6i_ I:79-94,118-138,138-150,155-167 2b5t d2b5ti1 I:79-94,118-134,137-150,155-167 1jti d1jtib_ B:30-45,68-76,96-109,114-126 1t1f d1t1fb1 B:79-94,118-133,137-150,155-167 1t1f d1t1fc1 C:79-94,118-133,137-150,155-167 1t1f d1t1fa1 A:79-94,118-133,137-150,155-167 1jti d1jtia_ A:30-45,68-76,96-109,114-126 1dvn d1dvna_ A:35-50,68-84,89-100,106-118 1a7c d1a7ca_ A:35-51,68-84,89-100,106-118 1dvm d1dvmc_ C:35-50,68-84,90-101,106-118 1dvm d1dvmb_ B:35-50,68-84,90-101,106-118 1imv d1imva_ A:61-76,97-111,115-126,131-143 1dvm d1dvmd_ D:35-50,68-84,90-101,106-118 1dvm d1dvma_ A:35-50,68-84,90-101,106-118 1db2 d1db2b_ B:35-50,68-84,90-101,106-118 1db2 d1db2a_ A:35-50,68-84,90-101,106-118 1c5g d1c5ga_ A:58-73,91-107,112-124,129-141 1jti d1jtib_ B:30-45,78-91,96-109,114-126 9pai d9paia_ A:53-68,86-102,107-118,124-136 1jti d1jtia_ A:30-45,78-92,96-109,114-126 1lj5 d1lj5a_ A:35-51,68-84,89-100,106-118 1xqj d1xqja_ A:31-47,65-85,85-96,101-113 1xqg d1xqga_ A:31-47,65-85,85-96,101-113 1ova d1ovab_ B:53-68,93-105,109A-122,127-139 1uhg d1uhga_ A:30-45,80-93,96-109,114-126 8. c.1.27 (2r)-phospho-3-sulfolactate synthase ComA TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 1qwg d1qwga_ A:74-85,86-98,100-105,112-127 1u83 d1u83a_ A:78-88,89-101,103-108,115-131 9. d.58.28 Peptide methionine sulfoxide reductase common fold is elaborated with additional secondary structures ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 1fva d1fvab_ B:72-83,127-140,156-161,163-185 1fvg d1fvga_ A:72-83,127-140,156-161,163-185 1fva d1fvaa_ A:72-83,127-140,156-161,163-185 1nwa d1nwaa_ A:13-24,64-77,93-99,100-118 1ff3 d1ff3b_ B:51-63,106-119,135-141,142-164 1ff3 d1ff3a_ A:51-63,106-119,135-141,142-164 1ff3 d1ff3c_ C:51-63,106-119,135-141,142-164 2gt3 d2gt3a1 A:51-63,106-119,135-140,142-164 10. c.1.19 Cobalamin (vitamin B12)-dependent enzymes TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 1xrs d1xrsa_ A:296-305,305-328,333-341,348-365 1ccw d1ccwd_ D:173-182,225-244,246-254,257-280 1cb7 d1cb7b_ B:173-182,225-244,246-254,257-280 1ccw d1ccwb_ B:173-182,225-244,246-254,257-280 1i9c d1i9cb_ B:173-182,225-244,246-254,257-280 1i9c d1i9cd_ D:173-182,225-244,246-254,257-280 1cb7 d1cb7d_ D:173-182,225-244,246-254,257-280 1e1c d1e1cb1 B:237-245,247-270,280-287,289-312 1e1c d1e1cd1 D:237-245,247-270,280-287,289-312 7req d7reqb1 B:237-245,247-270,280-287,289-312 1req d1reqd1 D:237-245,247-270,280-287,289-312 5req d5reqd1 D:237-245,247-270,280-287,289-312 4req d4reqd1 D:237-245,247-270,280-287,289-312 2req d2reqd1 D:237-245,247-270,280-287,289-312 2req d2reqb1 B:237-245,247-270,280-287,289-312 6req d6reqd1 D:237-245,247-270,280-287,289-312 6req d6reqb1 B:237-245,247-270,280-287,289-312 5req d5reqb1 B:237-245,247-270,280-287,289-312 1req d1reqb1 B:237-245,247-270,280-287,289-312 3req d3reqb1 B:237-245,247-270,280-287,289-312 4req d4reqb1 B:237-245,247-270,280-287,289-312 7req d7reqd1 D:237-245,247-270,280-287,289-312 1egv d1egva_ A:261-269,275-291,293-299,311-327 1eex d1eexa_ A:261-269,275-291,293-299,311-327 1iwp d1iwpl_ L:262-270,276-292,294-300,312-328 1iwp d1iwpa_ A:262-270,276-292,294-300,312-328 1eex d1eexl_ L:261-269,275-291,293-299,311-327 2req d2reqc1 C:241-249,251-274,285-291,293-316 1mmf d1mmfa_ A:262-270,276-292,294-300,312-328 3req d3reqa1 A:241-249,251-274,285-291,293-316 1e1c d1e1cc1 C:241-249,251-274,283-291,293-316 6req d6reqd1 D:200-209,247-270,280-287,289-312 6req d6reqa1 A:241-249,251-274,284-291,293-316 1e1c d1e1ca1 A:241-249,251-274,283-291,293-316 6req d6reqc1 C:241-249,251-274,284-291,293-316 1req d1reqa1 A:241-249,251-274,283-291,293-316 6req d6reqb1 B:200-209,247-270,280-287,289-312 2req d2reqa1 A:241-249,251-274,285-291,293-316 4req d4reqc1 C:241-249,251-274,284-291,293-316 5req d5reqc1 C:241-249,251-274,284-291,293-316 7req d7reqc1 C:241-249,251-274,283-291,293-316 1e1c d1e1cb1 B:200-209,247-270,280-287,289-312 1req d1reqb1 B:200-209,247-270,280-287,289-312 4req d4reqa1 A:241-249,251-274,283-291,293-316 5req d5reqa1 A:241-249,251-274,283-291,293-316 1req d1reqc1 C:241-249,251-274,283-291,293-316 4req d4reqb1 B:200-209,247-270,280-287,289-312 1e1c d1e1cd1 D:200-209,247-270,280-287,289-312 7req d7reqa1 A:241-249,251-274,283-291,293-316 7req d7reqb1 B:200-209,247-270,280-287,289-312 2req d2reqb1 B:200-209,247-270,280-287,289-312 4req d4reqd1 D:200-209,247-270,280-287,289-312 5req d5reqb1 B:200-209,247-270,280-287,289-312 5req d5reqd1 D:200-209,247-270,280-287,289-312 1req d1reqd1 D:200-209,247-270,280-287,289-312 2req d2reqd1 D:200-209,247-270,280-287,289-312 7req d7reqd1 D:200-209,247-270,280-287,289-312 3req d3reqb1 B:200-209,247-270,280-287,289-312 1req d1reqc1 C:199-208,213-233,234-242,251-274 4req d4reqa1 A:199-208,213-233,234-242,251-274 1req d1reqa1 A:199-208,213-233,234-242,251-274 1e1c d1e1ca1 A:199-208,213-233,234-242,251-274 1e1c d1e1cc1 C:199-208,213-233,234-242,251-274 5req d5reqa1 A:199-208,213-233,234-242,251-274 5req d5reqc1 C:199-208,213-233,238-242,251-274 7req d7reqa1 A:199-208,213-233,234-242,251-274 7req d7reqc1 C:199-208,213-233,234-242,251-274 6req d6reqc1 C:199-208,213-233,238-242,251-274 6req d6reqa1 A:199-208,213-233,238-242,251-274 4req d4reqc1 C:199-208,213-233,238-242,251-274 14. d.147.1 Methenyltetrahydromethanopterin cyclohydrolase Methenyltetrahydromethanopterin cyclohydrolase consists of two alpha+beta subdomains 1qlm d1qlma_ A:3-19,45-58,134-141,173-184 1qlm d1qlma_ A:3-19,45-58,163-170,173-184 15. c.6.2 Glycoside hydrolase/deacetylase in the different families beta-barrels are similarly distorted but may vary in the number of strands ! 7-stranded beta/alpha barrel variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=7, S=8; strand order 1234567; some members may have fewer strands 1xw8 d1xw8a_ A:106-114,116-132,134-139,142-152 3bui d3buia3 A:278-287,307-330,332-342,346-368 1tqu d1tqua3 A:278-287,307-330,332-342,346-368 3d4z d3d4za3 A:278-287,307-330,332-342,346-368 3bvw d3bvwa3 A:278-287,307-330,332-342,346-368 1hxk d1hxka3 A:278-287,307-330,332-342,346-368 2fyv d2fyva3 A:278-287,307-330,332-342,346-368 1tqt d1tqta3 A:278-287,307-330,332-342,346-368 3bvx d3bvxa3 A:278-287,307-330,332-342,346-368 1hty d1htya3 A:278-287,307-330,332-342,346-368 2alw d2alwa3 A:278-287,307-330,332-342,346-368 2f7r d2f7ra3 A:278-287,307-330,332-342,346-368 2f7q d2f7qa3 A:278-287,307-330,332-342,346-368 3d51 d3d51a3 A:278-287,307-330,332-342,346-368 3bub d3buba3 A:278-287,307-330,332-342,346-368 2f1a d2f1aa3 A:278-287,307-330,332-342,346-368 2ow6 d2ow6a3 A:278-287,307-330,332-342,346-368 1qwn d1qwna3 A:278-287,307-330,332-342,346-368 1tqs d1tqsa3 A:278-287,307-330,332-342,346-368 2f7o d2f7oa3 A:278-287,307-330,332-342,346-368 3ddg d3ddga3 A:278-287,307-330,332-342,346-368 2f18 d2f18a3 A:278-287,307-330,332-342,346-368 3d52 d3d52a3 A:278-287,307-330,332-342,346-368 3bvt d3bvta3 A:278-287,307-330,332-342,346-368 1tqw d1tqwa3 A:278-287,307-330,332-342,346-368 3czs d3czsa3 A:278-287,307-330,332-342,346-368 1qx1 d1qx1a3 A:278-287,307-330,332-342,346-368 1qwu d1qwua3 A:278-287,307-330,332-342,346-368 2f7p d2f7pa3 A:278-287,307-330,332-342,346-368 3buq d3buqa3 A:278-287,307-330,332-342,346-368 3bvu d3bvua3 A:278-287,307-330,332-342,346-368 1r33 d1r33a3 A:278-287,307-330,332-342,346-368 2ow7 d2ow7a3 A:278-287,307-330,332-342,346-368 1tqv d1tqva3 A:278-287,307-330,332-342,346-368 3blb d3blba3 A:278-287,307-330,332-342,346-368 3ddf d3ddfa3 A:278-287,307-330,332-342,346-368 3bud d3buda3 A:278-287,307-330,332-342,346-368 1r34 d1r34a3 A:278-287,307-330,332-342,346-368 3czn d3czna3 A:278-287,307-330,332-342,346-368 3cv5 d3cv5a3 A:278-287,307-330,332-342,346-368 3bup d3bupa3 A:278-287,307-330,332-342,346-368 1hww d1hwwa3 A:278-287,307-330,332-342,346-368 3bvv d3bvva3 A:278-287,307-330,332-342,346-368 3d50 d3d50a3 A:278-287,307-330,332-342,346-368 1ps3 d1ps3a3 A:278-287,307-330,332-342,346-368 3d4y d3d4ya3 A:278-287,307-330,332-342,346-368 2f1b d2f1ba3 A:278-287,307-330,332-342,346-368 24. c.1.22 UROD/MetE-like TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 1u1u d1u1ua2 A:560-569,616-636,642-651,656-664 1u22 d1u22a2 A:560-569,616-638,642-651,656-664 1u1u d1u1ua1 A:157-166,215-234,236-243,248-258 1u1j d1u1ja2 A:560-569,616-638,642-651,656-664 1u22 d1u22a1 A:157-166,215-234,236-243,248-258 1u1h d1u1ha1 A:157-166,215-234,236-243,248-258 1u1j d1u1ja1 A:157-166,215-234,236-243,248-258 1u1h d1u1ha2 A:560-569,616-636,642-649,656-664 1j93 d1j93a_ A:152-163,220-229,247-253,258-266 1j93 d1j93a_ A:152-163,179-205,207-214,228-244 1r3s d1r3sa_ A:86-95,123-132,149-157,184-210 1jpi d1jpia_ A:86-95,123-132,149-157,184-210 1r3v d1r3va_ A:86-95,123-132,149-157,184-210 1r3t d1r3ta_ A:86-95,123-132,149-157,184-210 1r3r d1r3ra_ A:86-95,123-132,149-157,184-210 1jph d1jpha_ A:86-95,123-132,149-157,184-210 1jpk d1jpka_ A:86-95,123-132,149-157,184-210 1r3q d1r3qa_ A:86-95,123-132,149-157,184-210 1r3y d1r3ya_ A:86-95,123-132,149-157,184-210 1r3w d1r3wa_ A:86-95,123-132,149-157,184-210 1uro d1uroa_ A:86-95,123-132,149-157,184-210 1jpi d1jpia_ A:157-168,225-252,256-263,268-276 1jph d1jpha_ A:157-168,225-252,256-263,268-276 1uro d1uroa_ A:157-168,225-252,256-263,268-276 1jpk d1jpka_ A:157-168,225-252,256-263,268-276 1u22 d1u22a1 A:157-166,180-199,201-208,215-234 1r3r d1r3ra_ A:157-168,225-252,256-263,268-276 1r3s d1r3sa_ A:157-168,225-252,256-263,268-276 1r3y d1r3ya_ A:157-168,225-252,256-263,268-276 1r3w d1r3wa_ A:157-168,225-252,256-263,268-276 1r3v d1r3va_ A:157-168,225-252,256-263,268-276 1r3t d1r3ta_ A:157-168,225-252,256-263,268-276 1r3q d1r3qa_ A:157-168,225-252,256-263,268-276 1u1h d1u1ha1 A:157-166,180-199,201-208,215-234 1u1j d1u1ja1 A:157-166,180-199,201-208,215-234 1u1u d1u1ua1 A:157-166,180-199,201-208,215-234 1u1h d1u1ha2 A:560-569,575-598,600-607,616-636 1u1u d1u1ua2 A:560-569,575-598,600-607,616-636 1u22 d1u22a2 A:560-569,575-598,600-607,616-638 1u1j d1u1ja2 A:560-569,575-598,600-607,616-638 27. c.1.24 Pyridoxine 5'-phosphate synthase TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 1ixq d1ixqa_ A:155-162,164-186,187-193,196-207 1ixq d1ixqb_ B:155-162,164-186,187-193,196-207 1ixp d1ixpd_ D:155-162,164-186,187-193,196-207 1ho1 d1ho1c_ C:155-162,164-186,187-193,196-207 1ho1 d1ho1a_ A:155-162,164-186,187-193,196-207 1ho1 d1ho1d_ D:155-162,164-186,187-193,196-207 1ixq d1ixqc_ C:155-162,164-186,187-193,196-207 1ixp d1ixpc_ C:155-162,196-207,210-215,226-243 1ixo d1ixod_ D:155-162,196-207,209-215,226-243 1m5w d1m5wg_ G:155-162,196-207,209-215,226-243 1ixp d1ixpa_ A:155-162,196-207,210-215,226-243 1m5w d1m5wf_ F:155-162,196-207,210-215,226-243 1ixq d1ixqa_ A:155-162,196-207,210-215,226-243 1m5w d1m5we_ E:155-162,196-207,209-215,226-243 1ixq d1ixqd_ D:155-162,196-207,210-215,226-243 1m5w d1m5wh_ H:155-162,196-207,209-215,226-243 1ho1 d1ho1b_ B:155-162,196-207,210-215,226-243 1m5w d1m5wd_ D:155-162,196-207,209-215,226-243 1ixp d1ixpb_ B:155-162,196-207,210-215,226-243 1m5w d1m5wb_ B:155-162,196-207,210-215,226-243 1m5w d1m5wg_ G:10-21,26-38,40-46,54-65 1ixq d1ixqd_ D:10-21,26-38,40-46,54-65 1ixn d1ixnb_ B:10-21,26-38,40-46,54-65 1ixp d1ixpa_ A:10-21,26-38,40-46,54-65 1ixq d1ixqb_ B:10-21,26-38,40-46,54-65 1ho1 d1ho1a_ A:10-21,26-38,40-46,54-65 1m5w d1m5wd_ D:10-21,26-38,40-46,54-65 1ixp d1ixpd_ D:10-21,26-38,40-46,54-65 1ixn d1ixnd_ D:10-21,26-38,40-46,54-65 1ixo d1ixob_ B:10-21,26-38,40-46,54-65 1ho1 d1ho1d_ D:10-21,26-38,40-46,54-65 1ho1 d1ho1b_ B:10-21,26-38,40-46,54-65 1ho1 d1ho1c_ C:10-21,26-38,40-46,54-65 1ixp d1ixpc_ C:10-21,26-38,40-46,54-65 1ixq d1ixqa_ A:10-21,26-38,40-46,54-65 1ixo d1ixoc_ C:10-21,26-38,40-46,54-65 1ixq d1ixqc_ C:10-21,26-38,40-46,54-65 1ixo d1ixod_ D:10-21,26-38,40-46,54-65 1ixn d1ixnc_ C:10-21,26-38,40-46,54-65 1ixn d1ixna_ A:10-21,26-38,40-46,54-65 1ixp d1ixpb_ B:10-21,26-38,40-46,54-65 1ixo d1ixoa_ A:10-21,26-38,40-46,54-65 1m5w d1m5wb_ B:10-21,26-38,40-46,54-65 1m5w d1m5wa_ A:10-21,26-38,40-46,54-65 1m5w d1m5we_ E:10-21,26-38,40-46,54-65 1m5w d1m5wh_ H:10-21,26-38,40-46,54-65 1ho4 d1ho4d_ D:10-21,26-38,40-46,54-65 1m5w d1m5wc_ C:10-21,26-38,40-46,54-65 1m5w d1m5wf_ F:10-21,26-38,40-46,54-65 1ho4 d1ho4b_ B:10-21,26-38,40-46,54-65 1ho4 d1ho4c_ C:10-21,26-38,40-46,54-65 1ho4 d1ho4a_ A:10-21,26-38,40-46,54-65 33. c.1.1 Triosephosphate isomerase (TIM) TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 1r2r d1r2rc_ C:95-103,105-120,121-129,138-155 2jk2 d2jk2b1 B:95-103,105-120,121-129,138-155 1r2r d1r2rd_ D:95-103,105-120,121-129,138-155 1r2t d1r2tb_ B:95-103,105-120,121-129,138-155 1r2t d1r2ta_ A:95-103,105-120,121-129,138-155 2oma d2omaa1 A:96-104,106-120,122-131,139-156 2jk2 d2jk2a1 A:95-103,105-120,121-129,138-155 1hti d1htib_ B:95-103,105-120,121-130,138-155 1wyi d1wyia1 A:95-103,105-120,121-128,138-155 1ssg d1ssgb_ B:95-103,105-120,121-130,138-155 1r2r d1r2ra_ A:95-103,105-120,121-128,138-155 1m6j d1m6jb_ B:102-110,112-127,128-136,145-162 1tpv d1tpva_ A:95-103,105-120,121-130,138-155 1tpw d1tpwa_ A:95-103,105-120,121-130,138-155 1lyx d1lyxa_ A:95-103,105-120,121-130,137-155 1spq d1spqb_ B:95-103,105-120,121-130,138-155 1sw3 d1sw3a_ A:95-103,105-120,121-130,138-155 1woa d1woac_ C:95-103,105-120,121-130,137-155 1woa d1woaa_ A:95-103,105-120,121-130,137-155 1tpv d1tpvb_ B:95-103,105-120,121-130,138-155 1sq7 d1sq7a_ A:95-103,105-120,121-130,138-155 1woa d1woab_ B:95-103,105-120,121-130,137-155 1woa d1woad_ D:95-103,105-120,121-130,137-155 1sw7 d1sw7a_ A:95-103,105-120,121-130,138-155 1sw0 d1sw0b_ B:95-103,105-120,121-130,138-155 1iig d1iiga_ A:95-103,105-120,121-130,138-155 4tim d4tima_ A:95-103,105-120,121-129,137-155 1tcd d1tcdb_ B:96-104,106-121,122-130,138-156 1sw7 d1sw7b_ B:95-103,105-120,121-130,136-155 2oma d2omab1 B:96-104,106-120,122-129,139-156 1wyi d1wyib1 B:95-103,105-120,121-128,137-155 1sq7 d1sq7b_ B:95-103,105-120,121-128,138-155 2ypi d2ypia_ A:95-103,105-120,121-130,138-155 1su5 d1su5b_ B:95-103,105-120,121-130,138-154 1iig d1iigb_ B:395-403,405-420,421-430,437-455 1ag1 d1ag1t_ T:95-103,105-120,121-130,137-155 6tim d6timb_ B:95-103,105-120,121-130,137-155 8tim d8tima_ A:95-103,105-120,121-130,138-154 5tim d5tima_ A:95-103,105-120,121-129,138-154 1mss d1mssb_ B:95-103,105-120,121-130,137-155 1kv5 d1kv5a_ A:95-103,105-120,121-130,137-155 1tsi d1tsia_ A:95-103,105-120,121-130,138-154 1su5 d1su5a_ A:95-103,105-120,121-130,138-154 1tsi d1tsib_ B:95-103,105-120,121-129,138-154 1r2r d1r2rb_ B:95-103,105-120,121-130,138-154 1tpu d1tpua_ A:95-103,105-120,121-130,138-154 1r2s d1r2sc_ C:95-103,105-120,121-129,138-154 1kv5 d1kv5b_ B:95-103,105-120,121-130,137-155 1ssg d1ssga_ A:95-103,105-120,121-130,138-154 1r2s d1r2sb_ B:95-103,105-120,121-129,138-154 1r2s d1r2sa_ A:95-103,105-120,121-129,138-154 1tpu d1tpub_ B:95-103,105-120,121-130,138-154 1ttj d1ttja_ A:95-103,105-120,121-130,137-155 1tpw d1tpwb_ B:95-103,105-120,121-130,138-154 1ssd d1ssda_ A:95-103,105-120,121-130,138-154 1r2s d1r2sd_ D:95-103,105-120,121-130,138-154 1m6j d1m6ja_ A:102-110,112-127,128-135,145-162 1trd d1trdb_ B:95-103,105-120,121-130,138-154 1tim d1timb_ B:95-103,105-120,121-130,137-155 3tim d3timb_ B:95-103,105-120,121-129,137-154 1tpc d1tpc1_ 1:95-103,105-120,121-130,138-154 1tph d1tph2_ 2:95-103,105-120,121-130,138-154 1tpc d1tpc2_ 2:95-103,105-120,121-130,138-154 1tcd d1tcda_ A:96-104,106-121,122-131,139-155 1tpb d1tpb2_ 2:95-103,105-120,121-130,138-154 1tre d1treb_ B:97-105,107-122,123-132,140-157 1tpb d1tpb1_ 1:95-103,105-120,121-130,138-154 5tim d5timb_ B:95-103,105-120,121-130,138-154 1spq d1spqa_ A:95-103,105-120,121-130,138-154 1tph d1tph1_ 1:95-103,105-120,121-130,138-154 1tti d1ttia_ A:95-103,105-120,121-130,138-154 1tpe d1tpea_ A:95-103,105-120,121-129,137-154 1sw3 d1sw3b_ B:95-103,105-120,121-130,138-154 3ypi d3ypib_ B:95-103,105-120,121-129,137-155 1aw1 d1aw1e_ E:97-105,107-122,123-132,140-157 1aw1 d1aw1b_ B:97-105,107-122,123-132,140-157 1aw1 d1aw1k_ K:97-105,107-122,123-132,140-157 1aw1 d1aw1h_ H:97-105,107-122,123-132,140-157 1tre d1trea_ A:97-105,107-122,123-132,140-157 1aw1 d1aw1a_ A:97-105,107-122,123-132,140-157 1aw1 d1aw1j_ J:97-105,107-122,123-132,140-157 1aw1 d1aw1g_ G:97-105,107-122,123-132,140-157 1aw1 d1aw1d_ D:97-105,107-122,123-132,140-157 2v5l d2v5la1 A:95-103,105-120,121-129,137-154 1ssd d1ssdb_ B:95-103,105-120,121-130,138-154 6tim d6tima_ A:95-103,105-120,121-129,137-154 3tim d3tima_ A:95-103,105-120,121-129,137-154 1hti d1htia_ A:95-103,105-120,121-129,137-154 1ney d1neya_ A:95-103,105-120,121-130,138-155 1mo0 d1mo0a_ A:94-102,104-119,120-129,136-153 8tim d8timb_ B:95-103,105-120,121-128,138-154 1mo0 d1mo0b_ B:94-102,104-119,120-129,136-153 1ml1 d1ml1g_ G:95-103,105-120,121-130,137-154 1ml1 d1ml1e_ E:95-103,105-120,121-130,137-154 1ml1 d1ml1a_ A:95-103,105-120,121-130,137-154 1ml1 d1ml1i_ I:95-103,105-120,121-130,137-154 1ml1 d1ml1k_ K:95-103,105-120,121-130,137-154 1ml1 d1ml1c_ C:95-103,105-120,121-130,137-154 1sux d1suxa_ A:96-104,106-121,122-131,138-155 1n55 d1n55a_ A:95-103,105-120,121-130,137-154 1nf0 d1nf0b_ B:95-103,105-120,121-130,138-155 1ag1 d1ag1o_ O:95-103,105-120,121-130,137-154 1ci1 d1ci1a_ A:96-104,106-121,122-131,138-155 1tpd d1tpda_ A:95-103,105-120,121-130,137-154 1tri d1tria_ A:94-103,105-120,121-130,137-154 2ypi d2ypib_ B:95-103,105-120,121-130,137-155 1amk d1amka_ A:95-103,105-120,121-130,137-154 1tmh d1tmhc_ C:97-105,107-122,123-132,139-157 7tim d7timb_ B:95-103,105-120,121-130,137-155 7tim d7tima_ A:95-103,105-120,121-130,137-155 4tim d4timb_ B:95-103,105-120,121-130,137-154 1btm d1btmb_ B:94-102,104-119,120-129,137-151 1qds d1qdsa_ A:95-103,105-120,121-130,137-154 1iih d1iihb_ B:395-403,405-420,421-430,437-454 1if2 d1if2a_ A:95-103,105-120,121-130,137-154 1tmh d1tmha_ A:97-105,107-122,123-132,139-157 1ypi d1ypia_ A:95-103,105-120,121-130,137-155 1ypi d1ypib_ B:95-103,105-120,121-128,138-155 1trd d1trda_ A:95-103,105-120,121-130,137-154 1tmh d1tmhb_ B:97-105,107-122,123-132,139-157 1tmh d1tmhd_ D:97-105,107-122,123-132,139-157 1sw0 d1sw0a_ A:95-103,105-120,121-130,136-154 1ney d1neyb_ B:95-103,105-120,121-130,137-155 1aw2 d1aw2g_ G:97-105,107-122,123-130,140-157 1aw2 d1aw2a_ A:97-105,107-122,123-130,140-157 1aw2 d1aw2d_ D:97-105,107-122,123-130,140-157 1aw2 d1aw2j_ J:97-105,107-122,123-130,140-157 1aw2 d1aw2h_ H:97-105,107-122,123-130,140-157 1aw2 d1aw2b_ B:97-105,107-122,123-130,140-157 1aw2 d1aw2e_ E:97-105,107-122,123-130,140-157 1aw2 d1aw2k_ K:97-105,107-122,123-130,140-157 3ypi d3ypia_ A:95-103,105-120,121-130,137-155 1i45 d1i45a_ A:95-103,105-120,121-128,138-155 1i45 d1i45b_ B:95-103,105-120,121-128,138-155 1nf0 d1nf0a_ A:95-103,105-120,121-128,138-155 1b9b d1b9ba_ A:96-104,106-121,122-131,138-153 2btm d2btmb_ B:94-102,104-119,120-129,136-151 1btm d1btma_ A:94-102,104-119,120-129,136-151 1ydv d1ydvb_ B:95-103,105-120,121-130,137-152 2btm d2btma_ A:94-102,104-119,120-129,136-151 1lzo d1lzoa_ A:95-103,105-120,121-128,138-151 1vga d1vgaa_ A:95-103,105-120,121-128,138-151 1b9b d1b9bb_ B:596-604,606-621,622-631,638-653 1m7p d1m7pa_ A:95-103,105-120,121-128,137-151 36. c.6.1 Glycosyl hydrolases family 6, cellulases 7-stranded beta/alpha barrel variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=7, S=8; strand order 1234567; some members may have fewer strands 1qk0 d1qk0b_ B:220-230,238-254,257-266,272-291 1cb2 d1cb2b_ B:219-230,238-254,257-266,272-291 1cb2 d1cb2a_ A:219-230,238-254,257-266,272-291 1qk0 d1qk0a_ A:220-230,238-254,257-266,272-291 1qk2 d1qk2b_ B:220-230,238-254,257-266,272-291 1hgy d1hgya_ A:219-230,238-254,257-266,272-291 2bvw d2bvwb_ B:224-235,243-259,262-271,277-296 1qjw d1qjwb_ B:220-230,238-254,257-266,272-291 1hgw d1hgwa_ A:220-230,238-254,257-266,272-291 1qk2 d1qk2a_ A:220-230,238-254,257-266,272-291 1ocb d1ocba_ A:224-235,243-259,262-271,277-296 1hgw d1hgwb_ B:220-230,238-254,257-266,272-291 2bvw d2bvwa_ A:224-235,243-259,262-271,277-296 1ocb d1ocbb_ B:224-235,243-259,262-271,277-296 1ocn d1ocna_ A:224-235,243-259,262-271,277-296 1bvw d1bvwa_ A:225-235,243-259,262-271,277-296 1hgy d1hgyb_ B:220-230,238-254,257-266,272-291 3cbh d3cbha_ A:221-230,238-254,257-266,272-291 1oc7 d1oc7a_ A:226-235,243-259,262-271,277-296 1oc5 d1oc5a_ A:226-235,243-259,262-271,277-296 1oc6 d1oc6a_ A:226-235,243-259,262-271,277-296 1gz1 d1gz1a_ A:226-235,243-259,262-271,277-296 1ocj d1ocja_ A:226-235,243-259,262-271,277-296 1up3 d1up3a_ A:205-215,215-237,238-247,252-264 1dys d1dysa_ A:139-147,155-171,174-183,189-208 40. c.1.20 tRNA-guanine transglycosylase TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 1it8 d1it8a1 A:97-105,138-160,163-169,173-188 1it8 d1it8b1 B:97-105,138-160,163-169,173-188 1j2b d1j2bb2 B:97-105,138-160,163-169,173-188 1iq8 d1iq8a1 A:196-204,233-244,246-251,296-326 1j2b d1j2ba2 A:97-105,138-160,163-169,173-188 1it8 d1it8a1 A:196-204,233-244,246-251,296-326 1j2b d1j2bb2 B:196-204,233-244,246-251,296-326 1j2b d1j2ba2 A:196-204,233-244,246-251,296-326 2qzr d2qzra1 A:103-112,164-190,196-203,207-222 1p0e d1p0ea_ A:103-112,164-190,196-203,207-222 1q2s d1q2sb_ B:103-112,164-190,196-203,207-222 1s38 d1s38a_ A:103-111,164-190,196-203,207-222 1q2s d1q2sd_ D:103-112,164-190,196-203,207-222 1s39 d1s39a_ A:103-111,164-190,196-203,207-222 1q65 d1q65a_ A:103-111,164-190,196-203,207-222 1q66 d1q66a_ A:103-111,164-190,196-203,207-222 1n2v d1n2va_ A:103-112,164-190,196-203,207-222 1ozm d1ozma_ A:103-112,164-190,196-203,207-222 1ozq d1ozqa_ A:103-112,164-190,196-203,207-222 1wke d1wkea_ A:103-112,164-190,196-203,207-222 1y5x d1y5xa1 A:103-112,164-190,196-203,207-222 1wkd d1wkda_ A:103-112,164-190,196-203,207-222 1q2r d1q2rc_ C:104-112,164-190,196-203,207-222 1q2r d1q2ra_ A:104-112,164-190,196-203,207-222 1k4g d1k4ga_ A:103-112,164-190,196-203,207-222 1q2s d1q2sa_ A:104-112,164-190,196-203,207-222 1q2s d1q2sc_ C:104-112,164-190,196-203,207-222 1q2r d1q2rb_ B:104-112,164-190,196-203,207-222 1q2r d1q2rd_ D:104-112,164-190,196-203,207-222 1q4w d1q4wa_ A:103-112,164-190,196-203,207-222 2bbf d2bbfa1 A:104-111,164-190,196-203,207-222 2pwu d2pwua1 A:104-112,164-190,196-203,207-222 1p0b d1p0ba_ A:104-112,164-190,196-203,207-222 2qii d2qiia1 A:104-112,164-190,196-203,207-222 1y5x d1y5xd1 D:1103-1113,1164-1190,1196-1203,1207-1222 42. d.280.1 Sulfolobus fructose-1,6-bisphosphatase-like Sulfolobus fructose-1,6-bisphosphatase-like 4 layers: a/b/b/a; antiparallel beta sheets; similarities to ferredoxin-like fold (scop_cf 54861) in the N-terminal part (1-120) and to the Bacterial S-adenosylmethionine decarboxylase subunit (scop_fa 997656) in the C-terminal part (121-340) 1umg d1umga_ A:135-149,247-258,267-276,313-334 1umg d1umga_ A:135-149,247-258,290-301,313-334 48. c.1.33 EAL domain-like variant of the beta/alpha-barrel fold with strand 1 being antiparallel to the rest ! TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 2bas d2basb1 B:46-53,57-80,84-89,99-113 2bas d2basa1 A:46-53,57-80,84-89,99-113