1. c.47.1 Thioredoxin-like
Thioredoxin fold core: 3 layers, a/b/a; mixed beta-sheet of 4 strands, order 4312; strand 3 is antiparallel to the rest
1syx d1syxa1 A:79-86,90-94,108-126,128-132
1syx d1syxc1 C:79-86,90-94,108-126,128-132
1qgv d1qgva_ A:79-86,90-95,108-126,128-133
1syx d1syxe1 E:79-86,90-94,108-126,128-132
2. d.92.1 Metalloproteases ("zincins"), catalytic domain
Zincin-like contains mixed beta sheet with connection over free side of the sheet
1y3g d1y3ge1 E:27-31,37-44,64-89,97-105
2g4z d2g4za1 A:27-31,37-44,64-89,97-105
1npc d1npca_ A:27-31,38-48,65-90,99-106
1y3g d1y3ge1 E:15-25,37-44,64-89,97-105
1qf0 d1qf0a_ A:15-25,37-44,64-89,97-105
1gxw d1gxwa_ A:15-25,37-44,64-89,97-105
1fjt d1fjta_ A:15-25,37-44,64-89,97-105
1lne d1lnee_ E:15-25,37-44,64-89,97-105
1qf1 d1qf1a_ A:15-25,37-44,64-89,97-105
2g4z d2g4za1 A:15-25,37-44,64-89,97-105
1lnd d1lnde_ E:15-25,37-44,64-89,97-105
1kto d1ktoa_ A:15-25,37-44,64-89,97-105
1zdp d1zdpe1 E:15-25,37-44,64-89,97-105
1l3f d1l3fe_ E:15-25,36-47,64-89,97-105
5tln d5tlna_ A:15-25,37-47,64-89,97-105
1tlp d1tlpe_ E:15-25,37-47,64-89,97-105
1os0 d1os0a_ A:15-25,37-47,64-89,97-105
4tln d4tlna_ A:15-25,37-47,64-89,97-105
2a7g d2a7ge1 E:15-25,37-47,64-89,97-105
1fju d1fjua_ A:15-25,37-47,64-89,97-105
1fj3 d1fj3a_ A:15-25,37-47,64-89,97-105
2tli d2tlia_ A:15-25,37-47,64-89,97-105
7tln d7tlna_ A:15-25,37-47,64-89,97-105
1tlx d1tlxa_ A:15-25,37-47,64-89,97-105
1qf2 d1qf2a_ A:15-25,37-47,64-89,97-105
2tmn d2tmne_ E:15-25,37-47,64-89,97-105
4tmn d4tmne_ E:15-25,37-47,64-89,97-105
1tli d1tlia_ A:15-25,37-47,64-89,97-105
1fjw d1fjwa_ A:15-25,37-47,64-89,97-105
1kei d1keia_ A:15-25,37-47,64-89,97-105
3tli d3tlia_ A:15-25,37-47,64-89,97-105
6tli d6tlia_ A:15-25,37-47,64-89,97-105
1kl6 d1kl6a_ A:15-25,37-47,64-89,97-105
1kkk d1kkka_ A:15-25,37-47,64-89,97-105
1kjo d1kjoa_ A:15-25,37-47,64-89,97-105
1ks7 d1ks7a_ A:15-25,37-47,64-89,97-105
1kjp d1kjpa_ A:15-25,37-47,64-89,97-105
1fjo d1fjoa_ A:15-25,37-47,64-89,97-105
4tli d4tlia_ A:15-25,37-47,64-89,97-105
1kro d1kroa_ A:15-25,37-47,64-89,97-105
1fjv d1fjva_ A:15-25,37-47,64-89,97-105
1kr6 d1kr6a_ A:15-25,37-47,64-89,97-105
2tlx d2tlxa_ A:15-25,37-47,64-89,97-105
1pe5 d1pe5a_ A:15-25,37-47,64-89,97-105
1bqb d1bqba_ A:24-28,34-45,61-86,94-102
3. c.3.1 FAD/NAD(P)-binding domain
FAD/NAD(P)-binding domain core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander
1xan d1xana1 A:18-23,22-27,29-43,150-155
4grt d4grta1 A:18-23,22-27,29-43,150-155
1k4q d1k4qa1 A:18-23,22-27,29-43,150-155
1grb d1grba1 A:18-23,22-27,29-43,150-155
1ojt d1ojta1 A:119-125,124-129,131-145,266-271
1bhy d1bhya1 A:119-125,124-129,131-145,266-271
1grt d1grta1 A:17-23,22-27,29-43,150-155
1coy d1coya1 A:8-14,13-18,20-34,283-288
3cox d3coxa1 A:8-14,13-18,20-34,283-288
1gv4 d1gv4b1 B:128-133,132-137,139-154,253-258
2gmj d2gmja1 A:32-38,37-42,44-62,207-212
2gqf d2gqfa1 A:1-7,6-11,13-27,158-163
2gmh d2gmhb1 B:32-38,37-42,44-62,207-212
4. c.94.1 Periplasmic binding protein-like II Similar in architecture to the superfamily I but partly differs in topology !
Periplasmic binding protein-like II consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication ! mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
1s50 d1s50a1 A:62-67,133-139,141-150,185-191
1s7y d1s7ya1 A:62-67,133-139,141-150,185-191
1sd3 d1sd3a1 A:62-67,133-139,141-150,185-191
1s9t d1s9ta1 A:62-67,133-139,141-150,185-191
2f36 d2f36b1 B:62-66,132-138,140-149,184-190
2f36 d2f36a1 A:61-66,132-138,140-149,184-190
1sd3 d1sd3b1 B:62-67,133-139,141-150,185-191
2f36 d2f36c1 C:62-66,132-138,140-149,184-190
1ycj d1ycja1 A:489-494,680-686,688-697,732-738
1s7y d1s7yb1 B:62-67,133-139,141-150,185-191
1ycj d1ycjb1 B:490-494,680-686,688-697,732-738
1s9t d1s9tb1 B:62-67,133-139,141-150,185-191
1txf d1txfa1 A:62-66,132-138,140-149,184-190
2cmo d2cmob1 B:62-67,133-139,141-150,187-193
1m5e d1m5eb_ B:62-67,133-139,141-150,187-193
1nnk d1nnka_ A:59-64,130-136,138-147,184-190
1m5e d1m5ec_ C:62-67,133-139,141-150,187-193
1m5e d1m5ea_ A:62-67,133-139,141-150,187-193
1nnp d1nnpb_ B:59-64,130-136,138-147,184-190
1ftm d1ftmc_ C:62-67,133-139,141-150,187-193
1my2 d1my2c_ C:62-67,133-139,141-150,187-193
1p1w d1p1wa_ A:62-67,133-139,141-150,187-193
1my1 d1my1c_ C:62-67,133-139,141-150,187-193
1p1q d1p1qb_ B:62-67,133-139,141-150,187-193
1mxz d1mxzc_ C:62-67,133-139,141-150,187-193
3bbr d3bbra1 A:62-67,133-139,141-150,187-193
1p1q d1p1qc_ C:62-67,133-139,141-150,187-193
2p2a d2p2ab1 B:59-64,130-136,138-147,184-191
1my0 d1my0c_ C:62-67,133-139,141-150,187-193
1m5f d1m5fc_ C:62-67,133-139,141-150,187-193
1m5b d1m5bc_ C:62-67,133-139,141-150,187-193
1p1q d1p1qa_ A:62-67,133-139,141-150,187-193
1nnp d1nnpa_ A:59-64,130-136,138-147,184-190
1p1w d1p1wb_ B:62-67,133-139,141-150,187-193
1lbc d1lbcb_ B:62-67,133-139,141-150,187-193
1lbc d1lbcc_ C:62-67,133-139,141-150,187-193
3bbr d3bbrb1 B:62-67,133-139,141-150,187-193
1m5f d1m5fb_ B:62-67,133-139,141-150,187-193
1p1o d1p1oa_ A:62-67,133-139,141-150,187-193
1lb8 d1lb8a_ A:62-67,133-139,141-150,187-193
1ftj d1ftjc_ C:62-67,133-139,141-150,187-193
1lb8 d1lb8b_ B:62-67,133-139,141-150,187-193
1mm6 d1mm6a_ A:62-67,133-139,141-150,187-193
1ftm d1ftmb_ B:62-67,133-139,141-150,187-193
1mxz d1mxzb_ B:62-67,133-139,141-150,187-193
1mm7 d1mm7c_ C:62-67,133-139,141-150,187-193
1mxz d1mxza_ A:62-67,133-139,141-150,187-193
1mm6 d1mm6b_ B:62-67,133-139,141-150,187-193
1my2 d1my2a_ A:62-67,133-139,141-150,187-193
1my1 d1my1a_ A:62-67,133-139,141-150,187-193
1lbc d1lbca_ A:62-67,133-139,141-150,187-193
1ftm d1ftma_ A:62-67,133-139,141-150,187-193
1my2 d1my2b_ B:62-67,133-139,141-150,187-193
2al4 d2al4f1 F:62-67,133-139,141-150,187-193
2al4 d2al4c1 C:62-67,133-139,141-150,187-193
1my1 d1my1b_ B:62-67,133-139,141-150,187-193
1m5b d1m5bb_ B:62-67,133-139,141-150,187-193
1my0 d1my0b_ B:62-67,133-139,141-150,187-193
1m5f d1m5fa_ A:62-67,133-139,141-150,187-193
1m5b d1m5ba_ A:62-67,133-139,141-150,187-193
2al4 d2al4b1 B:62-67,133-139,141-150,187-193
2al4 d2al4e1 E:62-67,133-139,141-150,187-193
2p2a d2p2aa1 A:59-64,130-136,138-147,184-190
1ms7 d1ms7a_ A:59-64,130-136,138-147,184-190
1mxy d1mxyc_ C:62-67,133-139,141-150,187-193
1my0 d1my0a_ A:62-66,133-139,141-150,187-193
1mm7 d1mm7b_ B:62-67,133-139,141-150,187-193
1ms7 d1ms7b_ B:59-64,130-136,138-147,184-190
1ftj d1ftjb_ B:62-67,133-139,141-150,187-193
2al4 d2al4a1 A:62-67,133-139,141-150,187-193
2al4 d2al4d1 D:62-67,133-139,141-150,187-193
1ms7 d1ms7c_ C:59-64,130-136,138-147,184-190
1mqd d1mqdb_ B:59-64,130-136,138-147,184-190
3bfu d3bfuc1 C:62-67,133-139,141-150,187-193
1mm7 d1mm7a_ A:62-67,133-139,141-150,187-193
1yae d1yaee1 E:489-494,680-686,688-697,732-738
1yae d1yaea1 A:489-494,680-686,688-697,732-738
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 84 (enumeration index: query17) of S4
3ms3 A:15-25,37-44,64-89,97-105
3o6h A:62-67,133-139,141-150,187-193
3ik6 B:62-67,133-139,141-150,187-193
3ik6 H:62-67,133-139,141-150,187-193
3ik6 E:62-67,133-139,141-150,187-193
3o6g A:62-67,133-139,141-150,187-193
2i3v A:62-67,133-139,141-150,187-193
2i3v D:62-67,133-139,141-150,187-193
2i3v B:62-67,133-139,141-150,187-193
3p7r E:15-25,37-44,64-89,97-105
3p7r E:27-31,37-44,64-89,97-105
3do2 A:15-25,37-47,64-89,97-105
3do2 A:27-31,37-47,64-89,97-105
3o2a A:62-67,133-139,141-150,187-193
3gd3 B:129-133,155-163,212-219,221-229
3gd3 C:128-133,155-163,212-219,221-229
3gd3 D:129-133,155-163,212-219,221-229
3ssb A:15-25,37-44,64-89,97-105
3g3k A:61-67,133-139,141-150,185-191
3g3k B:62-67,133-139,141-150,185-191
3dnz A:15-25,37-44,64-89,97-105
3dnz A:27-31,37-44,64-89,97-105
3q9t C:4-10,9-14,16-30,261-266
3q9t B:4-10,9-14,16-30,261-266
3m3k E:62-67,133-139,141-150,187-193
3m3k A:62-67,133-139,141-150,187-193
3m3k C:62-67,133-139,141-150,187-193
3msa A:15-25,37-47,64-89,97-105
3fv4 A:15-25,37-47,64-89,97-105
3fv4 A:27-31,37-47,64-89,97-105
3hsi A:123-127,136-140,177-194,386-397
3hsi A:80-87,136-140,177-194,386-397
3fv1 A:475-479,665-671,673-682,717-723
3fv1 B:475-479,665-671,673-682,717-723
3fcq A:15-25,37-47,64-89,97-105
3p7t E:15-25,37-47,64-89,97-105
3p7t E:27-31,37-47,64-89,97-105
3m3f A:61-67,133-139,141-150,187-193
3dp6 A:62-67,133-139,141-150,187-193
3dp6 C:62-67,133-139,141-150,187-193
3dp6 B:62-67,133-139,141-150,187-193
2gfe C:62-67,133-139,141-150,187-193
2zns A:475-479,665-671,673-682,717-723
2wi0 A:15-25,37-44,64-89,97-105
2wi0 A:27-31,37-44,64-89,97-105
2xx7 A:62-67,133-139,141-150,187-193
2xx7 C:62-67,133-139,141-150,187-193
2xx7 B:62-67,133-139,141-150,187-193
2zbw B:2-8,7-12,14-28,111-116
3gd4 A:128-133,132-137,139-154,253-258
2av4 A:96-104,108-112,126-144,146-150
3eim A:15-25,37-47,64-89,97-105
3eim A:27-31,37-47,64-89,97-105
2xx8 A:62-67,133-139,141-150,187-193
2xx8 C:62-67,133-139,141-150,187-193
2xx8 B:62-67,133-139,141-150,187-193
2whz A:15-25,37-44,64-89,97-105
2whz A:27-31,37-44,64-89,97-105
3gbb B:62-66,132-138,140-149,184-190
3gbb A:62-66,132-138,140-149,184-190
3qxm A:458-463,649-655,657-666,701-707
3qxm B:458-463,649-655,657-666,701-707
3dp4 A:62-67,133-139,141-150,187-193
3o29 A:62-67,133-139,141-150,187-193
2i0c A:62-67,133-139,141-150,185-191
2i0c B:62-67,133-139,141-150,185-191
3ijo B:62-67,133-139,141-150,187-193
3ijo H:62-67,133-139,141-150,187-193
3ijo E:62-67,133-139,141-150,187-193
3lsw A:62-67,133-139,141-150,187-193
3fbo A:15-25,37-44,64-89,97-105
3fbo A:27-31,37-44,64-89,97-105
2i0b A:62-67,133-139,141-150,185-191
2i0b B:62-67,133-139,141-150,185-191
3rnn A:62-67,133-139,141-150,187-193
3rnn C:62-67,133-139,141-150,187-193
3rnn B:62-67,133-139,141-150,187-193
3p7s E:15-25,37-44,64-89,97-105
3p7s E:27-31,37-44,64-89,97-105
3g3j A:62-67,133-139,141-150,185-191
3g3j B:62-67,133-139,141-150,185-191
3t9x B:62-67,133-139,141-150,187-193
3t9x F:62-67,133-139,141-150,187-193
3t9x D:62-67,133-139,141-150,187-193
3fvn B:475-479,665-671,673-682,717-723
3fas A:60-65,131-137,139-148,185-191
3fvg A:475-479,665-671,673-682,717-723
3fvg B:475-479,665-671,673-682,717-723
3mxn A:526-530,538-546,567-588,600-610
3b6t A:451-456,645-651,653-662,699-705
3h6u A:62-67,133-139,141-150,187-193
3lsf B:62-67,133-139,141-150,187-193
3lsf E:62-67,133-139,141-150,187-193
3lsf H:62-67,133-139,141-150,187-193
3bft C:62-67,133-139,141-150,187-193
3bft B:62-67,133-139,141-150,187-193
3f2p A:15-25,37-44,64-89,97-105
3f2p A:27-31,37-44,64-89,97-105
3f28 A:15-25,37-47,64-89,97-105
3f28 A:27-31,37-47,64-89,97-105
3g3i A:62-67,133-139,141-150,185-191
3g3i B:62-67,133-139,141-150,185-191
3djg X:18-23,22-27,29-43,150-155
3tdj A:62-67,133-139,141-150,187-193
3tdj B:62-67,133-139,141-150,187-193
3h6v A:62-67,133-139,141-150,187-193
3h6v B:62-67,133-139,141-150,187-193
3rn8 A:62-67,133-139,141-150,187-193
3rn8 C:62-67,133-139,141-150,187-193
3rn8 B:62-67,133-139,141-150,187-193
2xxr A:489-494,680-686,688-697,732-738
2xxr B:489-494,680-686,688-697,732-738
3b6w A:451-456,645-651,653-662,699-705
3b6w B:451-456,645-651,653-662,699-705
3il1 B:62-67,133-139,141-150,187-193
3il1 H:62-67,133-139,141-150,187-193
3il1 E:62-67,133-139,141-150,187-193
3p7w E:15-25,37-44,64-89,97-105
3h6t A:62-67,133-139,141-150,187-193
3h6t C:62-67,133-139,141-150,187-193
2xxi A:62-67,133-139,141-150,187-193
2xxi C:62-67,133-139,141-150,187-193
2xxi B:62-67,133-139,141-150,187-193
3epe A:58-63,129-135,137-146,183-189
3t96 B:62-67,133-139,141-150,187-193
3t96 F:62-67,133-139,141-150,187-193
3t96 D:62-67,133-139,141-150,187-193
3lsl A:62-67,133-139,141-150,187-193
3lsl D:62-67,133-139,141-150,187-193
3lsl G:62-67,133-139,141-150,187-193
3s9e A:63-68,134-140,142-151,185-191
3s9e B:64-68,134-140,142-151,185-191
2xxt A:489-494,680-686,688-697,732-738
3pd8 A:59-64,130-136,138-147,184-190
3pd8 C:59-64,130-136,138-147,184-190
3pd8 B:59-64,130-136,138-147,184-190
3t9u A:62-67,133-139,141-150,187-193
3t9u C:62-67,133-139,141-150,187-193
3t93 B:62-67,133-139,141-150,187-193
3t93 D:62-67,133-139,141-150,187-193
3t93 F:62-67,133-139,141-150,187-193
2xxu A:489-494,680-686,688-697,732-738
2xxu B:489-494,680-686,688-697,732-738
3h6w A:62-67,133-139,141-150,187-193
3h6w B:62-67,133-139,141-150,187-193
3do1 A:15-25,37-44,64-89,97-105
3do1 A:27-31,37-44,64-89,97-105
3gix B:79-86,90-94,108-126,128-132
3gix A:79-86,90-94,108-126,128-132
2xxx A:489-494,680-686,688-697,732-738
2xxx B:489-494,680-686,688-697,732-738
2xxx C:489-494,680-686,688-697,732-738
2i3w B:62-67,133-139,141-150,187-193
2i3w A:62-67,133-139,141-150,187-193
2cn2 C:356-362,382-387,438-445,447-453
2cn2 D:356-362,382-387,438-445,447-453
2cn2 A:356-362,382-387,438-445,447-453
2cn2 B:356-362,382-387,438-445,447-453
3fat A:60-65,131-137,139-148,185-191
3fat C:60-65,131-137,139-148,185-191
3fat B:60-65,131-137,139-148,185-191
3p7v E:15-25,37-44,64-89,97-105
3r7x B:62-67,133-139,141-150,187-193
3p7p E:15-25,37-44,64-89,97-105
3p7p E:27-31,37-44,64-89,97-105
3n21 A:15-25,37-44,64-89,97-105
3nn7 A:15-25,37-44,64-89,97-105
3nn7 A:27-31,37-44,64-89,97-105
2cn3 A:356-362,382-387,438-445,447-453
2xxy C:489-494,680-686,688-697,732-738
2xxy A:489-494,680-686,688-697,732-738
2xxy B:489-494,680-686,688-697,732-738
3pmv A:62-67,133-139,141-150,187-193
3o28 A:62-67,133-139,141-150,187-193
3tkd B:62-67,133-139,141-150,187-193
3tkd A:62-67,133-139,141-150,187-193
3fvk A:475-479,665-671,673-682,717-723
3fvk B:475-479,665-671,673-682,717-723
3p7u E:15-25,37-44,64-89,97-105
2xxh A:62-67,133-139,141-150,187-193
2xxh C:62-67,133-139,141-150,187-193
2xxh B:62-67,133-139,141-150,187-193
2uxa C:62-67,133-139,141-150,187-193
2uxa B:62-67,133-139,141-150,187-193
3kgc A:62-67,133-139,141-150,187-193
3o6i A:62-67,133-139,141-150,187-193
3ilu B:62-67,133-139,141-150,187-193
3ilu H:62-67,133-139,141-150,187-193
3ilu E:62-67,133-139,141-150,187-193
3fvp A:15-25,37-44,64-89,97-105
3fvp A:27-31,37-44,64-89,97-105
3pmw A:62-67,133-139,141-150,187-193
3pmx A:62-67,133-139,141-150,187-193
3fb0 A:15-25,37-47,64-89,97-105
3fb0 A:27-31,37-47,64-89,97-105
3fvo A:475-479,665-671,673-682,717-723
3fvo B:475-479,665-671,673-682,717-723
3kei A:58-63,129-135,137-146,183-189
3kei B:58-63,129-135,137-146,183-189
3ept B:4-9,8-13,15-29,166-171
3ept A:4-9,8-13,15-29,166-171
2xhd A:62-67,133-139,141-150,187-193
2xhd B:62-67,133-139,141-150,187-193
2xxv B:488-494,680-686,688-697,732-738
3fxp A:15-25,37-47,64-89,97-105
3fxp A:27-31,37-47,64-89,97-105
3for A:15-25,37-44,64-89,97-105
3for A:27-31,37-44,64-89,97-105
3t9h B:62-67,133-139,141-150,187-193
3t9h D:62-67,133-139,141-150,187-193
3t9h F:62-67,133-139,141-150,187-193
3gba B:62-66,132-138,140-149,184-190
3gba C:62-66,132-138,140-149,184-190
3gba D:62-66,132-138,140-149,184-190
3gba A:62-66,132-138,140-149,184-190
3fv2 A:475-479,665-671,673-682,717-723
3fv2 B:475-479,665-671,673-682,717-723
3g3f A:62-67,133-139,141-150,185-191
3g3f B:62-67,133-139,141-150,185-191
3ijx B:62-67,133-139,141-150,187-193
3ijx H:62-67,133-139,141-150,187-193
3ijx D:62-67,133-139,141-150,187-193
3m3l D:62-67,133-139,141-150,187-193
3m3l A:62-67,133-139,141-150,187-193
3m3l G:62-67,133-139,141-150,187-193
1xbs A:79-86,90-94,108-126,128-132
2xx9 A:62-67,133-139,141-150,187-193
2xx9 C:62-67,133-139,141-150,187-193
2xx9 B:62-67,133-139,141-150,187-193
2r0g B:4-9,8-13,15-29,166-171
3g3h A:62-67,133-139,141-150,185-191
3g3h B:62-67,133-139,141-150,185-191
3flf A:15-25,37-47,64-89,97-105
3flf A:27-31,37-47,64-89,97-105
3ilt E:62-67,133-139,141-150,187-193
3ilt B:62-67,133-139,141-150,187-193
3ilt H:62-67,133-139,141-150,187-193
2xxw B:489-494,680-686,688-697,732-738
3fgd A:15-25,37-44,64-89,97-105
3g3g A:62-67,133-139,141-150,185-191
3g3g B:62-67,133-139,141-150,185-191
3p7q E:15-25,37-44,64-89,97-105
3p7q E:27-31,37-44,64-89,97-105
3qss A:1-6,5-10,11-26,195-200
3ls7 A:15-25,37-47,64-89,97-105
3b6q A:451-456,645-651,653-662,699-705
3fuz A:475-479,665-671,673-682,717-723
3fuz B:475-479,665-671,673-682,717-723