1. d.52.8 Fe-S cluster assembly (FSCA) domain-like similar putative active site with a conserved cysteine residue ! Alpha-lytic protease prodomain-like core: alpha-beta(2)-(alpha)-beta; 2 layers: alpha/beta 2cu6 d2cu6b1 B:32-40,41-48,58-72,75-82 2cu6 d2cu6a1 A:32-40,41-48,58-72,75-82 1wcj d1wcja_ A:32-40,42-49,57-73,76-83 1uwd d1uwda_ A:32-40,42-49,57-73,76-81 1th5 d1th5a1 A:177-187,188-197,201-217,220-226 1xhj d1xhja_ A:29-37,38-45,52-71,74-81 1veh d1veha_ A:34-44,45-53,58-78,81-86 2. d.109.1 Actin depolymerizing proteins Gelsolin-like 3 layers: a/b/a; contains mixed beta-sheet 1svy d1svya_ A:188-195,196-203,207-226,229-236 2fh4 d2fh4a3 A:670-677,678-685,689-707,715-722 2fh1 d2fh1a3 A:670-677,678-685,689-707,715-722 1h1v d1h1vg3 G:670-676,678-685,689-707,715-722 1rgi d1rgig2 G:185-194,195-203,206-226,229-236 1p8x d1p8xa3 A:670-677,678-685,689-707,716-722 1d0n d1d0na2 A:184-194,195-203,206-226,229-236 1kcq d1kcqa_ A:184-194,195-203,206-226,229-236 1d0n d1d0nb2 B:184-194,195-203,206-226,229-236 2fh2 d2fh2a3 A:670-677,678-685,689-707,715-722 2fh3 d2fh3c3 C:670-677,678-685,689-708,715-722 2fh1 d2fh1c3 C:670-677,678-685,689-708,715-722 2fh2 d2fh2c3 C:670-677,678-685,689-708,715-722 1jhw d1jhwa3 A:280-287,290-297,301-320,326-332 2fh4 d2fh4b3 B:670-677,678-685,689-708,716-722 2fh2 d2fh2b3 B:670-677,678-685,689-708,716-722 2fh4 d2fh4c3 C:670-677,678-685,689-708,715-722 1p8x d1p8xc3 C:670-676,678-685,689-708,715-722 2fh1 d2fh1b3 B:670-677,678-685,689-708,716-722 2fh3 d2fh3b3 B:670-677,678-685,689-708,716-722 1p8x d1p8xb3 B:670-677,678-685,689-708,716-722 1j72 d1j72a3 A:280-287,290-297,301-320,326-332 2fh3 d2fh3a3 A:668-677,678-686,689-707,715-722 1nph d1npha1 A:445-453,460-468,472-491,494-501 1d0n d1d0nb3 B:303-309,313-320,330-343,348-355 2fh3 d2fh3b1 B:443-453,460-469,472-491,494-501 1rgi d1rgig3 G:303-309,313-320,324-343,348-355 1d0n d1d0na3 A:303-309,313-320,330-343,348-355 1p8x d1p8xc1 C:445-453,460-468,472-491,494-501 1nph d1npha3 A:670-677,678-685,689-708,716-722 1p8x d1p8xb1 B:445-453,460-468,472-491,494-501 2fh1 d2fh1b1 B:445-453,460-468,472-491,494-501 1m4j d1m4jb_ B:65-72,83-90,94-113,118-124 1m4j d1m4ja_ A:65-72,83-90,94-113,118-124 2fh1 d2fh1c1 C:445-453,460-468,472-491,494-501 1h1v d1h1vg1 G:445-453,460-468,472-491,494-501 1jhw d1jhwa2 A:161-170,171-179,182-202,205-212 2fh2 d2fh2c1 C:445-453,460-468,472-491,494-501 2fh4 d2fh4c1 C:445-453,460-468,472-491,494-501 2fh2 d2fh2b1 B:445-453,460-468,472-491,494-501 1hqz d1hqz2_ 2:63-72,79-88,98-112,115-121 2fh3 d2fh3c1 C:445-453,460-468,472-491,494-501 1d0n d1d0na5 A:565-572,573-580,584-599,602-607 1hqz d1hqz5_ 5:63-72,79-88,98-112,115-121 1j72 d1j72a2 A:163-170,171-178,182-201,205-212 1hqz d1hqz6_ 6:63-72,79-88,98-112,115-121 1hqz d1hqz9_ 9:63-72,79-88,98-112,115-121 1d0n d1d0na6 A:668-677,678-686,695-707,716-722 1hqz d1hqz1_ 1:63-72,79-88,98-112,115-121 1hqz d1hqz4_ 4:63-72,79-88,98-112,115-121 1d0n d1d0nb6 B:668-677,678-686,695-707,716-722 1hqz d1hqz3_ 3:63-72,79-88,98-112,115-122 1hqz d1hqz8_ 8:63-72,79-88,98-112,115-121 1svr d1svra_ A:188-195,196-201,207-226,229-234 1nph d1npha2 A:565-572,573-580,584-599,602-607 1svq d1svqa_ A:188-195,196-201,209-226,229-234 1d0n d1d0nb5 B:565-572,573-580,584-599,602-607 2fh4 d2fh4b2 B:565-572,573-580,584-599,602-607 2fh3 d2fh3a2 A:565-572,573-580,584-599,602-607 2fh1 d2fh1b2 B:565-572,573-580,584-599,602-607 2fh1 d2fh1a2 A:565-572,573-580,584-599,602-607 1hqz d1hqz7_ 7:63-73,78-88,98-112,115-121 2fh4 d2fh4c2 C:565-572,573-580,584-599,602-607 2fh4 d2fh4b1 B:444-453,460-469,472-491,494-501 1p8x d1p8xa2 A:565-572,573-580,584-599,602-607 1p8x d1p8xb2 B:565-572,573-580,584-599,602-607 2fh2 d2fh2a2 A:565-572,573-580,584-599,602-607 2fh3 d2fh3c2 C:565-572,573-580,584-599,602-607 2fh2 d2fh2b2 B:565-572,573-580,584-599,602-607 2fh1 d2fh1c2 C:565-572,573-580,584-599,602-607 2fh4 d2fh4a2 A:565-572,573-580,584-599,602-607 2fh2 d2fh2c2 C:565-572,573-580,584-599,602-607 1p8x d1p8xc2 C:565-572,573-580,584-599,602-607 2fh3 d2fh3b2 B:565-572,573-580,584-599,602-607 1h1v d1h1vg2 G:565-572,573-580,584-599,602-607 1wnj d1wnja_ A:60-69,76-85,100-109,112-118 1j72 d1j72a1 A:46-55,57-66,70-89,92-99 1jhw d1jhwa1 A:46-55,56-66,70-89,92-99 1cfy d1cfya_ A:61-73,78-90,104-113,116-123 1ahq d1ahqa_ A:60-71,74-86,100-109,112-119 1cfy d1cfyb_ B:61-73,78-90,104-113,116-123 1udm d1udma_ A:61-74,80-91,104-113,115-122 1cof d1cofa_ A:62-73,78-90,104-113,116-123 1ak6 d1ak6a_ A:80-89,96-106,119-129,133-139 1ak7 d1ak7a_ A:81-89,96-106,119-129,133-139 1mdu d1mdua_ A:42-52,56-66,70-89,92-99 1d0n d1d0na1 A:65-77,79-91,94-113,116-123 1qpv d1qpva_ A:62-75,76-90,104-113,116-123 1d0n d1d0na4 A:445-456,457-468,472-491,494-501 1cnu d1cnua_ A:60-72,73-86,100-109,112-119 2fh4 d2fh4a1 A:445-456,457-468,472-491,494-501 2vik d2vika_ A:42-54,55-67,70-89,92-99 1p8x d1p8xa1 A:445-456,457-468,472-491,494-501 1d0n d1d0nb4 B:445-456,457-468,472-491,494-501 1d0n d1d0nb1 B:66-77,79-90,94-113,116-123 2fh1 d2fh1a1 A:445-456,457-468,472-491,494-501 1udm d1udma_ A:61-74,80-91,94-105,115-122 2fh3 d2fh3a1 A:445-456,457-468,472-491,494-501 1t2l d1t2la_ A:54-69,70-84,97-106,109-115 2fh2 d2fh2a1 A:445-456,457-468,472-491,494-501 1rgi d1rgig1 G:66-77,79-90,94-113,116-123 1mdu d1mdud_ D:42-53,55-66,70-89,92-99 3cjc d3cjcg1 G:42-53,55-66,70-89,92-99 1t3x d1t3xa1 A:56-69,70-83,97-106,109-115 3ci5 d3ci5g1 G:42-53,55-66,70-89,92-99 1yag d1yagg_ G:42-53,55-66,70-89,92-99 3cip d3cipg1 G:42-53,55-66,70-89,92-99 1yvn d1yvng_ G:42-53,55-66,70-89,92-99 1nlv d1nlvg_ G:42-53,55-66,70-89,92-99 1p8z d1p8zg_ G:66-77,79-90,94-113,116-123 2ff3 d2ff3a1 A:66-77,79-90,94-113,116-123 1nm1 d1nm1g_ G:42-53,55-66,70-89,92-99 2ff6 d2ff6g1 G:66-77,79-90,94-113,116-123 2vil d2vila_ A:42-54,55-67,70-89,92-99 1d4x d1d4xg_ G:42-53,55-66,70-89,92-99 1c0g d1c0gs_ S:44-55,57-68,72-91,94-101 1t44 d1t44g_ G:66-77,79-90,94-113,116-123 1nmd d1nmdg_ G:42-53,55-66,70-89,92-99 3cjb d3cjbg1 G:42-53,55-66,70-89,92-99 1eqy d1eqys_ S:42-53,55-66,70-89,92-99 1esv d1esvs_ S:42-53,55-66,70-89,92-99 1dej d1dejs_ S:44-55,57-68,72-91,94-101 1c0f d1c0fs_ S:44-55,57-68,72-91,94-101 1f7s d1f7sa_ A:64-77,79-92,106-115,118-125 1ak6 d1ak6a_ A:80-89,96-106,110-120,133-139 1vfq d1vfqa1 A:56-67,72-83,87-106,109-115 1wm4 d1wm4a_ A:56-66,73-83,87-105,109-115 1wnj d1wnja_ A:60-69,76-85,90-101,112-118 1q8g d1q8ga_ A:80-92,93-105,120-129,133-137 1q8x d1q8xa_ A:80-92,93-105,120-129,133-138 1t2l d1t2la_ A:54-69,70-84,87-98,109-115 1t2l d1t2lb_ B:56-68,71-83,87-106,109-115 1v6f d1v6fa_ A:71-84,86-99,103-122,125-131 1vkk d1vkka_ A:65-78,80-93,97-116,119-125 1t3y d1t3ya1 A:56-69,70-83,87-106,109-115 1wfs d1wfsa_ A:71-84,86-99,103-122,125-129 1cfy d1cfyb_ B:61-73,78-90,94-105,116-123 1cfy d1cfya_ A:61-73,78-90,94-105,116-123 1t3x d1t3xa1 A:56-69,70-83,87-98,109-115 1f7s d1f7sa_ A:64-77,79-92,96-107,118-125 3. c.14.1 ClpP/crotonase ClpP/crotonase core: 4 turns of (beta-beta-alpha)n superhelix 2fbm d2fbmc1 C:285-292,293-301,310-328,330-337 2f6q d2f6qa1 A:111-118,119-126,135-152,155-162 2fw2 d2fw2d1 D:4-12,13-22,30-47,50-57 2f6q d2f6qb1 B:111-118,119-126,135-152,155-162 2fbm d2fbmb1 B:285-292,293-300,310-327,330-337 1ef8 d1ef8c_ C:5-12,13-20,29-45,49-55 1ef8 d1ef8b_ B:5-12,13-20,29-45,49-55 1ef8 d1ef8a_ A:5-12,13-20,29-45,49-55 2fbm d2fbma1 A:285-292,293-301,310-328,330-337 2f6q d2f6qc1 C:111-118,119-126,135-152,155-162 1ef9 d1ef9a_ A:5-12,13-20,29-45,49-55 2fw2 d2fw2e1 E:5-12,13-20,30-47,50-57 1q51 d1q51e_ E:36-43,46-53,62-80,83-90 2fw2 d2fw2b1 B:5-12,13-20,30-47,50-57 1q51 d1q51g_ G:36-43,46-53,62-80,83-90 2fw2 d2fw2a1 A:5-12,13-21,30-47,50-57 1nzy d1nzya_ A:5-11,12-19,28-46,49-56 1q51 d1q51h_ H:36-43,46-53,62-80,83-90 1q52 d1q52g_ G:36-43,46-53,62-80,83-90 1q51 d1q51b_ B:36-43,46-53,62-80,83-90 1q51 d1q51j_ J:36-43,46-53,62-80,83-90 1k39 d1k39b_ B:10-17,18-25,34-52,55-62 1q51 d1q51a_ A:36-43,46-53,62-80,83-90 1rjn d1rjnc_ C:36-43,46-53,62-80,83-90 1q51 d1q51f_ F:36-43,46-53,62-80,83-90 1q52 d1q52b_ B:36-43,46-53,62-80,83-90 1hnu d1hnua_ A:10-17,18-25,34-52,55-62 1q51 d1q51d_ D:36-43,46-53,62-80,83-90 1rjn d1rjna_ A:36-43,46-53,62-80,83-90 1q51 d1q51i_ I:36-43,46-53,62-80,83-90 1q51 d1q51k_ K:36-43,46-53,62-80,83-90 1rjn d1rjnb_ B:36-43,46-53,62-80,83-90 1jxz d1jxzc_ C:5-11,12-19,28-46,49-56 1hno d1hnoa_ A:10-17,18-25,34-52,55-62 1q52 d1q52c_ C:36-43,46-53,62-80,83-90 1q51 d1q51l_ L:36-43,46-53,62-80,83-90 1pjh d1pjhb_ B:10-17,18-25,34-52,55-62 1pjh d1pjhc_ C:10-17,18-25,34-52,55-62 1q52 d1q52h_ H:36-43,46-53,62-80,83-90 1q52 d1q52a_ A:36-43,46-53,62-80,83-90 1rjm d1rjma_ A:36-43,46-53,62-80,83-90 1q51 d1q51c_ C:36-43,46-53,62-80,83-90 1q52 d1q52e_ E:36-43,46-53,62-80,83-90 1q52 d1q52d_ D:36-43,46-53,62-80,83-90 1k39 d1k39c_ C:10-17,18-25,34-52,55-62 1pjh d1pjha_ A:10-17,18-25,34-52,55-62 1nzy d1nzyc_ C:5-11,12-19,28-46,49-56 1q52 d1q52i_ I:36-43,46-53,62-80,83-90 2a7k d2a7ki1 I:1-8,9-16,25-43,46-52 1jxz d1jxzb_ B:5-11,12-19,28-46,49-56 1q52 d1q52l_ L:36-43,46-53,62-80,83-90 1rjm d1rjmb_ B:36-43,46-53,62-80,83-90 1sg4 d1sg4b1 B:4-11,14-21,29-47,50-57 1jxz d1jxza_ A:5-11,12-19,28-46,49-56 2a7k d2a7ke1 E:1-8,9-16,25-43,46-52 1q52 d1q52f_ F:36-43,46-53,62-80,83-90 1uiy d1uiya_ A:1-7,8-15,24-42,45-52 2a7k d2a7kg1 G:1-8,9-16,25-43,46-52 1rjm d1rjmc_ C:36-43,46-53,62-80,83-90 1q52 d1q52j_ J:36-43,46-53,62-80,83-90 2a7k d2a7kc1 C:1-8,9-16,25-43,46-52 1sg4 d1sg4a1 A:4-12,13-21,29-47,50-57 2a7k d2a7kb1 B:1-8,9-16,25-43,46-52 2fw2 d2fw2c1 C:5-12,13-20,30-47,50-57 1k39 d1k39a_ A:10-17,18-25,34-52,55-62 2a81 d2a81a1 A:1-8,9-16,25-43,46-52 1q52 d1q52k_ K:36-43,46-53,62-80,83-90 2a7k d2a7kh1 H:1-8,9-16,25-43,46-52 2fw2 d2fw2f1 F:5-12,13-20,30-47,50-57 2a81 d2a81c1 C:1-8,9-16,25-43,46-52 1nzy d1nzyb_ B:5-11,12-19,28-46,49-56 2a7k d2a7kd1 D:1-8,9-16,25-43,46-52 2a7k d2a7ka1 A:1-8,9-16,25-43,46-52 2a81 d2a81b1 B:1-8,9-16,25-43,46-52 2a7k d2a7kf1 F:1-8,9-16,25-43,46-52 1wdk d1wdka4 A:7-14,16-25,33-51,54-61 1wdl d1wdla4 A:7-14,16-25,33-51,54-61 1wdk d1wdkb4 B:7-14,16-25,33-51,54-61 1wdl d1wdlb4 B:7-14,16-25,33-51,54-61 2d3t d2d3ta4 A:7-14,16-23,33-51,54-61 1mj3 d1mj3c_ C:35-42,46-53,62-80,83-89 1ey3 d1ey3f_ F:35-42,46-53,62-80,83-89 1mj3 d1mj3e_ E:35-42,46-53,62-80,83-89 1ey3 d1ey3e_ E:35-42,46-53,62-80,83-89 1mj3 d1mj3b_ B:35-42,46-53,62-80,83-89 1mj3 d1mj3d_ D:35-42,46-53,62-80,83-89 1wdm d1wdmb4 B:7-14,16-25,33-51,54-61 1mj3 d1mj3f_ F:35-42,46-53,62-80,83-89 1mj3 d1mj3a_ A:35-42,46-53,62-80,83-89 1wdm d1wdma4 A:7-14,16-25,33-51,54-61 2d3t d2d3tb4 B:7-14,16-25,33-51,54-61 1sg4 d1sg4c1 C:4-10,14-21,29-47,50-57 1ey3 d1ey3a_ A:35-42,46-53,62-80,83-89 1dub d1dubd_ D:35-42,46-53,62-80,83-89 1dub d1dubc_ C:35-42,46-53,62-80,83-89 1dub d1dubf_ F:35-42,46-53,62-80,83-89 1dub d1duba_ A:35-42,46-53,62-80,83-89 1dub d1dube_ E:35-42,46-53,62-80,83-89 1dub d1dubb_ B:35-42,46-53,62-80,83-89 1xx4 d1xx4a_ A:33-38,43-50,58-76,79-86 1pix d1pixb2 B:93-102,103-112,121-139,141-147 2dub d2duba_ A:35-42,46-53,62-80,83-89 2dub d2dubd_ D:35-42,46-53,62-80,83-89 2dub d2dube_ E:35-42,46-53,62-80,83-89 2dub d2dubf_ F:35-42,46-53,62-80,83-89 2dub d2dubb_ B:35-42,46-53,62-80,83-89 1j7x d1j7xa_ A:100-106,108-114,126-141,142-149 1pix d1pixa2 A:93-102,103-112,121-139,141-147 1ey3 d1ey3d_ D:35-42,46-53,62-80,83-89 1ey3 d1ey3c_ C:35-42,46-53,62-80,83-89 2dub d2dubc_ C:35-42,46-53,62-80,83-89 1on3 d1on3f1 F:85-94,95-104,113-131,132-139 1o8u d1o8ud_ D:17-24,25-32,41-59,62-69 1ey3 d1ey3b_ B:35-42,46-53,62-80,83-89 1o8u d1o8uc_ C:17-24,25-32,41-59,62-69 1szo d1szoj_ J:17-24,25-32,41-59,62-69 1szo d1szog_ G:17-24,25-32,41-59,62-69 1o8u d1o8uf_ F:17-24,25-32,41-59,62-69 1szo d1szof_ F:17-24,25-32,41-59,62-69 1szo d1szoh_ H:17-24,25-32,41-59,62-69 1szo d1szoi_ I:17-24,25-32,41-59,62-69 1szo d1szob_ B:17-24,25-32,41-59,62-69 2f9y d2f9yb1 B:107-116,117-126,135-153,155-161 1o8u d1o8ue_ E:17-24,25-32,41-59,62-69 1szo d1szol_ L:17-24,25-32,41-59,62-69 1hzd d1hzde_ E:76-82,88-95,104-122,125-132 1on3 d1on3d2 D:316-325,326-335,344-362,363-370 1szo d1szoe_ E:17-24,25-32,41-59,62-68 1o8u d1o8ua_ A:17-24,25-32,41-59,62-68 2a7s d2a7sc2 C:336-345,346-355,364-382,384-390 1szo d1szoa_ A:17-24,25-32,41-59,62-68 1on9 d1on9a2 A:316-325,326-335,344-362,363-370 1o8u d1o8ub_ B:17-24,25-32,41-59,62-68 1on3 d1on3e2 E:316-325,326-335,344-362,363-370 1xo6 d1xo6a1 A:86-95,96-105,114-132,133-141 1szo d1szod_ D:17-24,25-32,41-59,62-68 1szo d1szok_ K:17-24,25-32,41-59,62-68 1hzd d1hzdb_ B:76-82,88-95,104-121,125-132 1hzd d1hzdc_ C:76-82,88-95,104-121,125-132 1on9 d1on9d2 D:316-325,326-335,344-362,363-370 1szo d1szoc_ C:17-24,25-32,41-59,62-68 1hzd d1hzda_ A:76-82,88-95,104-121,125-132 1xnw d1xnwf1 F:86-95,96-105,114-132,133-140 1on9 d1on9e2 E:316-325,326-335,344-362,364-370 2a7s d2a7sf1 F:97-106,107-116,125-143,145-151 1xo6 d1xo6e1 E:86-95,96-105,114-132,133-141 1on9 d1on9b2 B:316-325,326-335,344-362,364-370 1on3 d1on3b2 B:316-325,326-335,344-362,364-370 1hzd d1hzdf_ F:76-82,88-95,104-121,125-132 2a7s d2a7sa1 A:97-106,107-116,125-143,145-151 1xo6 d1xo6f1 F:86-95,96-105,114-132,133-141 1xnv d1xnva1 A:86-95,96-105,114-132,133-141 1xo6 d1xo6c1 C:86-95,96-105,114-132,133-141 1xnw d1xnwc1 C:86-95,96-105,114-132,133-141 1on3 d1on3c2 C:316-325,326-335,344-362,364-370 1on9 d1on9f2 F:316-325,326-335,344-362,364-370 1xnv d1xnvb1 B:86-95,96-105,114-132,133-141 1vrg d1vrgc2 C:307-316,317-326,335-353,355-361 1od2 d1od2a2 A:1876-1885,1886-1895,1925-1944,1945-1951 1on9 d1on9c2 C:316-325,326-335,344-362,364-370 2a7s d2a7sc1 C:97-106,107-116,125-143,145-151 2a7s d2a7sb2 B:336-345,346-355,364-382,384-390 2a7s d2a7sd1 D:97-106,107-116,125-143,145-151 1vrg d1vrgb2 B:307-316,317-326,335-353,355-361 1xnw d1xnwa1 A:86-95,96-105,114-132,133-141 1xny d1xnya1 A:86-95,96-105,114-132,133-141 1fc7 d1fc7a4 A:254-262,275-283,286-304,306-313 1dci d1dcic_ C:56-62,65-72,81-99,102-109 1hzd d1hzdd_ D:76-82,88-95,104-121,125-132 1xny d1xnyb1 B:86-95,96-105,114-132,133-141 1xo6 d1xo6b1 B:86-95,96-105,114-132,133-141 1vrg d1vrgf2 F:307-316,317-326,335-353,355-361 1vrg d1vrge2 E:307-316,317-326,335-353,355-361 2a7s d2a7sb1 B:97-106,107-116,125-143,145-151 1fc6 d1fc6a4 A:254-262,275-283,286-304,306-313 1dci d1dcib_ B:56-62,65-72,81-99,102-109 1on9 d1on9f1 F:85-94,95-104,113-131,132-140 1xnw d1xnwd1 D:86-95,96-105,114-132,133-141 1vrg d1vrgd2 D:307-316,317-326,335-353,355-361 1fc9 d1fc9a4 A:254-262,275-283,286-304,306-313 1vrg d1vrge1 E:75-84,85-94,103-121,122-130 1dci d1dcia_ A:56-62,65-72,81-99,102-109 2a7s d2a7se1 E:97-106,107-116,125-143,145-151 1xo6 d1xo6d1 D:86-95,96-105,114-132,133-141 1on3 d1on3b1 B:85-94,95-104,113-131,132-140 1on3 d1on3f2 F:316-325,326-335,344-362,364-371 1vrg d1vrgf1 F:75-84,85-94,103-121,122-130 1vrg d1vrga2 A:307-316,317-326,335-353,355-361 1on9 d1on9a1 A:85-94,95-104,113-131,132-140 1pix d1pixa3 A:345-354,355-364,387-405,407-414 1on3 d1on3d1 D:85-94,95-104,113-131,132-140 1fcf d1fcfa4 A:254-262,275-283,286-304,306-313 1xnw d1xnwb1 B:86-95,96-105,114-132,133-141 1on3 d1on3a1 A:85-94,95-104,113-131,132-140 2a7s d2a7sd2 D:336-345,346-355,364-382,384-390 1on9 d1on9d1 D:85-94,95-104,113-131,132-140 1on9 d1on9b1 B:85-94,95-104,113-131,132-140 1vrg d1vrgb1 B:75-84,85-94,103-121,122-130 1on9 d1on9c1 C:85-94,95-104,113-131,132-140 1on9 d1on9e1 E:85-94,95-104,113-131,132-140 1od4 d1od4b2 B:1876-1885,1886-1895,1925-1944,1946-1951 1vrg d1vrga1 A:75-84,85-94,103-121,122-130 1vrg d1vrgc1 C:75-84,85-94,103-121,123-130 1uyt d1uyta2 A:1876-1885,1886-1895,1925-1944,1946-1951 1on3 d1on3e1 E:85-94,95-104,113-131,132-140 1vrg d1vrgd1 D:75-84,85-94,103-121,122-130 1on3 d1on3c1 C:85-94,95-104,113-131,132-140 1od4 d1od4a2 A:1876-1885,1886-1895,1925-1944,1946-1951 2a7s d2a7se2 E:336-345,346-355,364-382,384-390 1uys d1uysb2 B:1876-1885,1886-1895,1925-1944,1946-1951 1w2x d1w2xa2 A:1876-1885,1886-1895,1925-1944,1946-1951 1od2 d1od2b2 B:1876-1885,1886-1895,1925-1944,1946-1951 1w2x d1w2xb2 B:1876-1885,1886-1895,1925-1944,1946-1951 1uys d1uysc2 C:1876-1885,1886-1895,1925-1944,1946-1951 1uyv d1uyva2 A:1876-1885,1886-1895,1925-1944,1946-1951 1uyv d1uyvc2 C:1876-1885,1886-1895,1925-1944,1946-1951 1xnw d1xnwd2 D:321-330,331-340,349-367,369-376 1xnw d1xnwe1 E:86-95,96-105,114-132,133-141 1uyt d1uytc2 C:1876-1885,1886-1895,1925-1944,1946-1951 1uyr d1uyrb2 B:1876-1885,1886-1895,1925-1944,1946-1951 1uyr d1uyra2 A:1876-1885,1886-1895,1925-1944,1946-1951 1od4 d1od4c2 C:1876-1885,1886-1895,1925-1944,1946-1951 1uys d1uysa2 A:1876-1885,1886-1895,1925-1944,1946-1951 1uyt d1uytb2 B:1876-1885,1886-1895,1925-1944,1946-1951 1uyv d1uyvb2 B:1876-1885,1886-1895,1925-1944,1946-1951 1w2x d1w2xc2 C:1876-1885,1886-1895,1925-1944,1946-1951 1wz8 d1wz8f1 F:11-17,20-27,44-53,56-63 1wz8 d1wz8b1 B:11-17,20-27,44-53,56-63 1wz8 d1wz8d1 D:11-17,20-27,44-53,56-63 1xnw d1xnwb2 B:321-330,331-340,349-367,369-376 1wz8 d1wz8c1 C:11-17,20-27,44-53,56-63 1xo6 d1xo6d2 D:321-330,331-340,349-367,369-376 1wz8 d1wz8a1 A:11-17,20-27,44-53,56-63 1xo6 d1xo6e2 E:321-330,331-340,349-367,369-376 1wz8 d1wz8e1 E:11-17,20-27,44-53,56-63 1xnw d1xnwa2 A:321-330,331-340,349-367,369-376 1xnw d1xnwe2 E:321-330,331-340,349-367,369-376 1on3 d1on3a2 A:316-325,326-335,344-362,363-375 1uyv d1uyvc1 C:1563-1573,1577-1588,1597-1615,1617-1623 1uyv d1uyva1 A:1563-1573,1577-1588,1597-1615,1617-1623 1uyt d1uytc1 C:1563-1573,1577-1588,1597-1615,1617-1623 1uyt d1uytb1 B:1563-1573,1577-1588,1597-1615,1617-1623 1w2x d1w2xb1 B:1563-1573,1577-1588,1597-1615,1617-1623 1uyv d1uyvb1 B:1563-1573,1577-1588,1597-1615,1617-1623 1w2x d1w2xa1 A:1563-1573,1577-1588,1597-1615,1617-1623 1w2x d1w2xc1 C:1563-1573,1577-1588,1597-1615,1617-1623 1uys d1uysc1 C:1563-1573,1577-1588,1597-1615,1617-1623 1od2 d1od2a1 A:1563-1573,1577-1588,1597-1615,1617-1623 1od4 d1od4c1 C:1563-1573,1577-1588,1597-1615,1617-1623 1uyt d1uyta1 A:1563-1573,1577-1588,1597-1615,1617-1623 1od4 d1od4a1 A:1563-1573,1577-1588,1597-1615,1617-1623 1uyr d1uyrb1 B:1563-1573,1577-1588,1597-1615,1617-1623 1pix d1pixb3 B:345-354,355-364,387-405,407-418 1uys d1uysa1 A:1563-1573,1577-1588,1597-1615,1617-1623 1uyr d1uyra1 A:1563-1573,1577-1588,1597-1615,1617-1623 2f9y d2f9ya1 A:100-109,110-119,136-154,156-165 1od4 d1od4b1 B:1563-1573,1577-1588,1597-1615,1617-1623 1od2 d1od2b1 B:1563-1573,1577-1588,1597-1615,1617-1623 1xo6 d1xo6c2 C:321-330,331-340,349-367,369-377 2a7s d2a7sa2 A:336-345,346-355,364-382,384-395 1uys d1uysb1 B:1563-1573,1577-1588,1597-1615,1617-1623 1xnw d1xnwf2 F:321-330,331-340,349-367,369-377 2a7s d2a7sf2 F:336-345,346-355,364-382,384-395 1xnw d1xnwc2 C:321-330,331-340,349-367,369-380 1xo6 d1xo6b2 B:321-330,331-340,349-367,369-380 1xo6 d1xo6a2 A:321-330,331-340,349-367,369-380 1xo6 d1xo6f2 F:321-330,331-340,349-367,369-380 1xnv d1xnva2 A:321-330,331-340,349-367,369-380 1xny d1xnya2 A:321-330,331-340,349-367,369-380 1xnv d1xnvb2 B:321-330,331-340,349-367,369-380 1xny d1xnyb2 B:321-330,331-340,349-367,369-380 1wz8 d1wz8b1 B:11-17,20-27,35-45,56-63 1wz8 d1wz8c1 C:11-17,20-27,35-45,56-63 1wz8 d1wz8d1 D:11-17,20-27,35-45,56-63 1wz8 d1wz8f1 F:11-17,20-27,35-45,56-63 1wz8 d1wz8a1 A:11-17,20-27,35-45,56-63 1wz8 d1wz8e1 E:11-17,20-27,35-45,56-63 6. c.97.1 Cytidine deaminase-like contains extra C-terminal strand 5, order 21345 ! Cytidine deaminase-like core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest 1aln d1alna2 A:211-218,256-265,271-284,287-293 1af2 d1af2a2 A:211-218,256-265,271-284,287-293 1ctt d1ctta2 A:211-218,256-265,271-284,287-293 1ctu d1ctua2 A:211-218,256-265,271-284,287-293 1p6o d1p6ob_ B:233-241,281-288,291-302,304-310 1ox7 d1ox7b_ B:233-241,281-288,291-302,304-310 1ysb d1ysbb1 B:233-241,281-288,291-302,304-310 1ysd d1ysdb1 B:233-241,281-288,291-302,304-310 1p6o d1p6oa_ A:33-41,81-88,91-102,104-110 1uaq d1uaqa_ A:33-41,81-88,91-102,104-110 1ysd d1ysda1 A:33-41,81-88,91-102,104-110 1ox7 d1ox7a_ A:33-41,81-88,91-102,104-110 1ysb d1ysba1 A:33-41,81-88,91-102,104-110 1rb7 d1rb7a_ A:33-41,81-88,91-102,104-110 1uaq d1uaqb_ B:33-41,81-88,91-102,104-110 1pkx d1pkxa2 A:431-438,534-539,544-555,557-562 1pkx d1pkxb2 B:431-438,534-539,544-555,557-562 1zcz d1zcza2 A:356-363,394-399,404-415,417-422 1pl0 d1pl0b2 B:431-438,534-539,544-555,557-562 1m9n d1m9nb2 B:432-439,535-540,545-556,558-563 1zcz d1zczb2 B:356-363,394-399,404-415,417-422 1pkx d1pkxc2 C:431-438,534-539,544-555,557-562 1p4r d1p4rb2 B:431-438,534-539,544-555,557-562 1pkx d1pkxd2 D:431-438,534-539,544-555,557-562 1g8m d1g8mb2 B:432-439,535-540,545-556,558-563 1thz d1thza2 A:432-439,535-540,545-556,558-563 1rb7 d1rb7b_ B:33-41,81-88,91-102,104-110 1thz d1thzb2 B:432-439,535-540,545-556,558-563 1p4r d1p4ra2 A:431-438,534-539,544-555,557-562 1g8m d1g8ma2 A:432-439,535-540,545-556,558-563 1pl0 d1pl0a2 A:431-438,534-539,544-555,557-562 1m9n d1m9na2 A:432-439,535-540,545-556,558-563 1oz0 d1oz0b2 B:432-439,535-540,545-556,558-563 1oz0 d1oz0a2 A:432-439,535-540,545-556,558-563 1pl0 d1pl0c2 C:431-438,534-539,544-555,557-562 1pl0 d1pl0d2 D:431-438,534-539,544-555,557-562 2a8n d2a8nb1 B:26-33,74-80,83-94,96-102 1wkq d1wkqa_ A:26-33,74-80,83-94,96-102 1wkq d1wkqb_ B:26-33,74-80,83-94,96-102 2a8n d2a8na1 A:26-33,74-80,83-94,96-103 1pkx d1pkxb2 B:260-267,316-323,326-337,337-345 1pkx d1pkxd2 D:260-267,316-323,326-337,337-345 1g8m d1g8mb2 B:261-268,317-324,327-338,338-346 2pw9 d2pw9d1 D:153-161,193-198,202-213,215-220 1m9n d1m9na2 A:261-268,317-324,327-338,338-346 2g84 d2g84a1 A:48-56,102-109,112-123,125-131 1g8m d1g8ma2 A:261-268,317-324,327-338,338-346 1z3a d1z3ab1 B:41-48,89-95,98-109,111-117 2b3j d2b3jc1 C:26-33,74-80,83-94,96-102 2b3j d2b3jb1 B:26-33,74-80,83-94,96-102 1pkx d1pkxc2 C:260-267,316-323,326-337,337-345 1wwr d1wwra1 A:25-32,73-79,82-93,95-101 1oz0 d1oz0a2 A:261-268,317-324,327-338,338-346 2b3j d2b3ja1 A:26-33,74-80,83-94,96-102 2pw9 d2pw9a1 A:153-161,193-198,202-213,215-220 1wwr d1wwrd1 D:25-32,73-79,82-93,95-101 1z3a d1z3aa1 A:41-48,89-95,98-109,111-117 1tiy d1tiya_ A:26-33,74-80,83-94,96-102 1pl0 d1pl0b2 B:260-267,316-323,326-337,337-345 1vq2 d1vq2a_ A:24-31,123-129,132-143,145-151 1wwr d1wwrc1 C:25-32,73-79,82-93,95-101 2b3j d2b3jd1 D:26-33,74-80,83-94,96-102 1thz d1thza2 A:261-268,317-324,327-338,338-346 1p4r d1p4ra2 A:260-267,316-323,326-337,337-345 1pkx d1pkxa2 A:260-267,316-323,326-337,337-345 2d5n d2d5nd2 D:26-33,65-71,82-91,93-99 1m9n d1m9nb2 B:261-268,317-324,327-338,338-346 2b3z d2b3zb2 B:26-33,65-71,82-91,93-99 2pw9 d2pw9b1 B:153-161,193-198,202-213,215-220 2hxv d2hxva2 A:26-33,68-74,85-94,96-102 1ux1 d1ux1c_ C:26-33,69-78,86-98,101-108 2pw9 d2pw9c1 C:153-161,193-198,202-213,215-220 1vk9 d1vk9a_ A:19-24,49-58,60-71,73-79 1thz d1thzb2 B:261-268,317-324,327-338,338-346 2d5n d2d5nb2 B:26-33,65-71,82-91,93-99 2d5n d2d5nc2 C:26-33,63-71,82-91,93-99 1ux1 d1ux1a_ A:26-33,69-78,86-98,101-108 2b3z d2b3zd2 D:26-33,65-71,82-91,93-99 1ux1 d1ux1b_ B:26-33,69-78,86-98,101-108 2d5n d2d5na2 A:26-33,65-71,82-91,93-99 1ux0 d1ux0b_ B:26-33,69-78,86-98,101-108 2b3z d2b3za2 A:26-33,65-71,82-91,93-99 1uwz d1uwzb_ B:26-33,69-78,86-98,101-108 1wwr d1wwrb1 B:25-32,72-79,82-93,95-101 1ux0 d1ux0a_ A:26-33,69-78,86-98,101-108 1uwz d1uwza_ A:26-33,69-78,86-98,101-108 1jtk d1jtkb_ B:26-33,69-78,86-98,101-108 1ux1 d1ux1d_ D:26-33,69-78,86-98,101-108 1jtk d1jtka_ A:26-33,69-78,86-98,101-108 1tiy d1tiyb_ B:26-33,74-80,83-94,96-102 1pl0 d1pl0d2 D:260-267,316-323,326-336,337-345 2b3z d2b3zc2 C:26-33,63-71,82-91,93-99 1pl0 d1pl0c2 C:260-267,317-322,326-337,339-345 2fr5 d2fr5b1 B:37-45,81-90,99-110,113-120 1oz0 d1oz0b2 B:261-268,318-323,327-338,340-346 2d30 d2d30a1 A:26-33,69-78,86-98,101-108 2fr5 d2fr5c1 C:37-45,81-90,99-110,113-120 2fr5 d2fr5a1 A:37-45,81-90,99-110,113-120 2fr6 d2fr6c1 C:37-45,81-90,99-110,113-120 2fr5 d2fr5d1 D:38-45,81-89,99-110,113-120 2d30 d2d30b1 B:26-33,69-78,86-97,101-108 2fr6 d2fr6b1 B:38-45,81-89,99-110,113-120 1ctu d1ctua1 A:74-80,118-125,129-140,145-150 1mq0 d1mq0a_ A:37-45,81-90,99-110,113-120 1zab d1zabd1 D:38-45,81-89,99-110,113-120 1zab d1zabc1 C:38-45,81-89,99-110,113-120 1af2 d1af2a1 A:74-80,118-125,129-140,145-150 1zab d1zabb1 B:38-45,81-89,99-110,113-120 2fr6 d2fr6d1 D:38-45,81-89,99-110,113-120 2fr6 d2fr6a1 A:38-45,81-89,99-110,113-120 1aln d1alna1 A:74-80,118-125,129-140,145-150 1mq0 d1mq0b_ B:37-45,81-90,99-111,113-120 1zab d1zaba1 A:38-45,81-89,99-110,113-120 1r5t d1r5td_ D:33-41,78-87,96-107,112-118 1r5t d1r5ta_ A:33-41,78-87,96-107,112-118 1r5t d1r5tb_ B:33-41,78-87,96-107,112-118 1p4r d1p4rb2 B:260-267,317-323,326-337,339-345 1pl0 d1pl0a2 A:260-267,317-323,326-337,339-344 1r5t d1r5tc_ C:33-41,78-87,96-107,112-117 1ctt d1ctta1 A:74-80,118-125,129-140,145-149 2z3g d2z3gb1 B:28-36,70-79,88-100,102-109 2z3g d2z3gd1 D:28-36,70-79,88-100,102-109 2z3h d2z3hb1 B:28-36,70-79,88-100,102-109 2z3g d2z3gc1 C:28-36,70-79,88-100,102-109 2z3h d2z3hd1 D:28-36,70-79,88-100,102-109 2z3h d2z3hc1 C:28-36,70-79,88-100,102-109 1wn5 d1wn5d1 D:28-36,70-79,88-100,102-109 1wn5 d1wn5c1 C:28-36,70-79,88-100,102-109 1wn5 d1wn5b1 B:28-36,70-79,88-100,102-109 2z3h d2z3ha1 A:28-36,70-79,88-100,102-109 2z3g d2z3ga1 A:28-36,70-79,88-100,102-109 1wn5 d1wn5a1 A:28-36,70-79,88-100,102-109 1wn6 d1wn6b1 B:28-36,70-79,88-100,102-109 1wn6 d1wn6a1 A:28-36,70-79,88-100,102-109 1zcz d1zczb2 B:217-224,253-259,263-270,273-279 1zcz d1zcza2 A:217-224,254-259,263-271,275-279 7. d.159.1 Metallo-dependent phosphatases different families of this superfamily are groupped in a single Pfam family, Metallo-dependent phosphatases 4 layers: alpha/beta/beta/alpha; mixed beta sheets; contains duplication 2nxf d2nxfa1 A:132-138,141-148,202-220,221-229 3d03 d3d03a1 A:105-110,114-120,132-147,150-157 2zo9 d2zo9b1 B:105-110,114-120,132-147,150-157 3d03 d3d03b1 B:105-110,114-120,132-147,150-157 2dxl d2dxla1 A:105-110,114-120,132-147,150-157 3d03 d3d03d1 D:105-110,114-120,132-147,150-157 3d03 d3d03f1 F:105-110,114-120,132-147,150-157 3d03 d3d03e1 E:105-110,114-120,132-147,150-157 3d03 d3d03c1 C:105-110,114-120,132-147,150-157 2zoa d2zoaa1 A:105-110,114-120,132-147,150-157 2dxn d2dxna1 A:105-110,114-120,132-147,150-157 2zo9 d2zo9c1 C:105-110,114-120,132-147,150-157 2zoa d2zoab1 B:105-110,114-120,132-147,150-157 2dxn d2dxnb1 B:105-110,114-120,132-147,150-157 2dxl d2dxlb1 B:105-110,114-120,132-147,150-157 1ho5 d1ho5b2 B:154-161,162-172,191-208,210-218 2z1a d2z1aa2 A:155-162,163-173,190-206,209-216 4kbp d4kbpb2 B:236-243,244-251,260-274,279-287 1s3l d1s3la_ A:83-89,90-98,100-111,114-120 1ho5 d1ho5a2 A:154-161,162-172,191-208,210-218 1s3l d1s3lb_ B:283-289,290-298,300-311,314-320 2ush d2usha2 A:154-161,162-172,191-208,210-218 1xzw d1xzwa2 A:235-242,243-250,259-272,278-286 1xzw d1xzwb2 B:735-742,743-750,759-772,778-786 1hpu d1hpud2 D:154-161,162-172,191-208,210-218 1hp1 d1hp1a2 A:154-161,162-172,191-208,210-218 2ush d2ushb2 B:154-161,162-172,191-208,210-218 1ush d1usha2 A:154-161,162-172,191-208,210-218 1hpu d1hpuc2 C:154-161,162-172,191-208,210-218 1hpu d1hpua2 A:154-161,162-172,191-208,210-218 1oi8 d1oi8a2 A:154-161,162-172,191-208,210-218 1oie d1oiea2 A:154-161,162-172,191-208,210-218 1hpu d1hpub2 B:154-161,162-172,191-208,210-218 1s3n d1s3na_ A:83-89,90-98,100-111,114-120 1s3n d1s3nb_ B:283-289,290-298,300-311,314-320 1oid d1oida2 A:154-161,162-172,191-208,210-218 1s3m d1s3ma_ A:83-89,90-98,100-111,114-120 1oid d1oidb2 B:154-161,162-172,191-208,210-218 1s3m d1s3mb_ B:283-289,290-298,300-311,314-320 1oi8 d1oi8b2 B:154-161,162-172,191-208,210-218 2z06 d2z06a1 A:96-103,104-114,123-136,138-146 2z06 d2z06d1 D:96-103,104-114,123-136,138-146 3kbp d3kbpc2 C:236-243,244-251,260-273,279-287 2qfp d2qfpd2 D:236-243,244-251,260-273,279-287 2qfp d2qfpb2 B:236-243,244-251,260-273,279-287 2ahd d2ahdd1 D:283-289,290-298,300-311,314-320 3kbp d3kbpa2 A:236-243,244-251,260-273,279-287 2ahd d2ahdb1 B:283-289,290-298,300-311,314-320 2ahd d2ahda1 A:83-89,90-98,100-111,114-120 2ahd d2ahdc1 C:83-89,90-98,100-111,114-120 3kbp d3kbpd2 D:236-243,244-251,260-273,279-287 3kbp d3kbpb2 B:236-243,244-251,260-273,279-287 2z06 d2z06c1 C:96-103,104-114,123-136,138-146 2z06 d2z06b1 B:96-103,104-114,123-136,138-146 2qfp d2qfpa2 A:236-243,244-251,260-273,279-287 2qfp d2qfpc2 C:236-243,244-251,260-273,279-287 4kbp d4kbpa2 A:236-243,244-251,260-273,279-287 1uf3 d1uf3d_ D:100-105,107-114,132-147,150-156 1t70 d1t70f_ F:1599-1606,1607-1617,1626-1638,1641-1649 2cv9 d2cv9d1 D:96-103,104-114,123-136,138-146 1t70 d1t70e_ E:1299-1306,1307-1317,1326-1338,1341-1349 4kbp d4kbpd2 D:236-243,244-251,260-273,279-287 4kbp d4kbpc2 C:236-243,244-251,260-273,279-287 2cv9 d2cv9c1 C:96-103,104-114,123-136,138-146 2qfr d2qfrb2 B:236-243,244-251,260-273,279-287 1t71 d1t71a_ A:107-114,115-125,136-148,151-159 2qfr d2qfra2 A:236-243,244-251,260-273,279-287 1t70 d1t70b_ B:399-406,407-417,426-438,441-449 1t70 d1t70c_ C:699-706,707-717,726-738,741-749 1t70 d1t70h_ H:2199-2206,2207-2217,2226-2238,2241-2249 1uf3 d1uf3e_ E:100-105,107-114,132-147,150-156 1kbp d1kbpa2 A:236-243,244-251,260-273,279-287 1kbp d1kbpb2 B:236-243,244-251,260-273,279-287 1kbp d1kbpd2 D:236-243,244-251,260-273,279-287 2cv9 d2cv9b1 B:96-103,104-114,123-136,138-146 1t70 d1t70a_ A:99-106,107-117,126-138,141-149 1kbp d1kbpc2 C:236-243,244-251,260-273,279-287 2cv9 d2cv9a1 A:96-103,104-114,123-136,138-146 1uf3 d1uf3a_ A:100-105,107-114,132-147,150-156 2hy1 d2hy1a1 A:118-125,126-133,145-159,161-170 1qfc d1qfca_ A:116-124,129-137,162-176,179-187 1t70 d1t70d_ D:999-1006,1007-1017,1026-1038,1041-1049 2hyo d2hyoa1 A:118-125,126-133,145-159,161-170 1t70 d1t70g_ G:1899-1906,1907-1917,1926-1938,1941-1949 2hyp d2hypa1 A:118-125,126-133,145-159,161-170 3ck2 d3ck2a1 A:67-73,74-82,90-102,104-110 2nyl d2nylf1 F:155-160,162-168,221-233,235-241 1uf3 d1uf3b_ B:100-105,107-114,132-147,150-156 2nyl d2nylc1 C:155-160,162-168,222-233,235-241 3dw8 d3dw8c1 C:155-160,162-168,222-233,235-241 2a22 d2a22a1 A:87-93,94-102,110-122,124-130 1uf3 d1uf3c_ C:100-105,107-114,132-147,150-156 1z2x d1z2xb1 B:72-78,79-88,95-108,109-115 2npp d2nppf1 F:155-160,162-168,222-233,235-241 2npp d2nppc1 C:155-160,162-168,222-233,235-241 3dw8 d3dw8f1 F:155-160,162-168,222-233,235-241 2a22 d2a22b1 B:87-93,94-102,110-122,124-130 2r17 d2r17b1 B:72-78,79-87,95-107,109-115 2r17 d2r17a1 A:72-78,79-87,95-107,109-115 2nym d2nymf1 F:155-160,162-168,222-233,235-241 2nym d2nymc1 C:155-160,162-168,222-233,235-241 1w24 d1w24a1 A:72-78,79-87,95-107,109-115 1xm7 d1xm7a_ A:97-103,104-112,122-137,139-145 1wao d1wao32 3:340-345,347-353,408-419,421-427 1jk7 d1jk7a_ A:161-166,168-174,229-240,242-248 1wao d1wao22 2:340-345,347-353,408-419,421-427 1wao d1wao42 4:340-345,347-353,408-419,421-427 3c5w d3c5wc1 C:155-160,162-168,222-233,235-241 1it6 d1it6a_ A:161-166,168-174,229-240,242-248 2ie4 d2ie4c1 C:155-160,162-168,222-233,235-241 1wao d1wao12 1:340-345,347-353,408-419,421-427 2bcd d2bcda1 A:161-166,168-174,229-240,242-248 1fjm d1fjmb_ B:161-166,168-174,229-240,242-248 1u32 d1u32a_ A:161-166,168-174,229-240,242-248 2ie3 d2ie3c1 C:155-160,162-168,222-233,235-241 1it6 d1it6b_ B:161-166,168-174,229-240,242-248 1s70 d1s70a_ A:161-166,168-174,229-240,242-248 1xm7 d1xm7b_ B:97-103,104-112,122-137,139-145 1m63 d1m63e_ E:187-192,194-200,262-273,275-281 1s95 d1s95b_ B:340-345,347-353,408-419,421-427 1fjm d1fjma_ A:161-166,168-174,229-240,242-248 2o8g d2o8gb1 B:161-166,168-174,229-240,242-248 1m63 d1m63a_ A:187-192,194-200,262-273,275-281 2o8a d2o8ab1 B:161-166,168-174,229-240,242-248 2o8g d2o8ga1 A:161-166,168-174,229-240,242-248 2o8a d2o8aa1 A:161-166,168-174,229-240,242-248 1s95 d1s95a_ A:340-345,347-353,408-419,421-427 1mf8 d1mf8a_ A:187-192,194-200,262-273,275-281 2p6b d2p6ba1 A:187-192,194-200,262-273,275-281 1aui d1auia_ A:187-192,194-200,262-273,275-281 3c9f d3c9fb2 B:159-166,167-178,198-207,210-218 1uf3 d1uf3f_ F:101-105,107-114,132-147,150-156 2bdx d2bdxa1 A:162-166,168-174,229-240,242-248 1tco d1tcoa_ A:187-192,194-200,262-273,275-281 2p6b d2p6bc1 C:187-192,194-200,262-273,275-281 3c9f d3c9fa2 A:159-166,167-178,198-207,210-218 2yvt d2yvta1 A:124-131,133-140,157-171,174-182 1z2x d1z2xa1 A:72-78,79-87,95-108,109-115 1z2w d1z2wb1 B:72-78,79-87,95-108,109-115 1z2w d1z2wa1 A:72-78,79-87,95-108,109-115 1qhw d1qhwa_ A:137-145,150-158,179-197,200-208 1ute d1utea_ A:116-124,129-137,158-176,179-187 1ii7 d1ii7b_ B:127-136,137-143,156-163,167-174 1ii7 d1ii7a_ A:127-136,137-143,156-163,167-174 1s8e d1s8eb_ B:127-136,137-143,156-163,167-174 3dsc d3dsca1 A:127-136,137-143,156-163,167-174 1s8e d1s8ea_ A:127-136,137-143,156-163,167-174 1nnw d1nnwb_ B:124-130,131-139,154-166,169-175 9. d.157.1 Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase duplication of beta(4)-alpha-beta-alpha motif; 4 layers a/b/b/a; mixed beta-sheets 2bib d2biba2 A:18-26,27-36,61-74,77-83 1wra d1wraa1 A:43-51,52-61,86-99,102-108 1wra d1wrab1 B:43-51,53-61,86-99,102-108 1qh3 d1qh3b_ B:11-21,22-29,32-44,45-52 1qh3 d1qh3a_ A:11-21,22-29,32-44,45-52 1qh5 d1qh5a_ A:11-21,22-29,32-44,45-52 1bmc d1bmca_ A:40-49,50-56,60-76,78-84 1qh5 d1qh5b_ B:11-21,22-29,32-44,45-52 1ww1 d1ww1b1 B:11-19,20-28,27-35,42-46 2q42 d2q42b1 B:11-21,22-29,32-42,48-52 2qed d2qeda1 A:11-20,22-28,31-43,44-51 2p97 d2p97a1 A:121-128,130-135,156-171,174-179 1ww1 d1ww1a1 A:11-19,20-28,27-35,42-46 2q42 d2q42b1 B:115-122,125-130,145-160,163-168 1bc2 d1bc2a_ A:39-49,50-56,60-76,78-84 2q42 d2q42a1 A:11-20,23-29,32-44,48-52 2p97 d2p97b1 B:121-128,130-135,156-171,174-179 1xm8 d1xm8b_ B:11-21,22-29,32-44,48-52 3bc2 d3bc2a_ A:39-49,50-56,60-76,78-84 1dxk d1dxka_ A:38-49,50-56,60-76,78-84 1xm8 d1xm8a_ A:11-21,22-29,32-44,48-52 2q42 d2q42a1 A:115-123,124-130,145-160,163-168 2bc2 d2bc2a_ A:38-49,50-56,60-76,78-84 2znb d2znba_ A:52-62,63-69,73-89,90-97 1xm8 d1xm8a_ A:115-123,124-130,145-160,163-168 1xm8 d1xm8b_ B:115-123,124-130,145-160,163-168 1vme d1vmea2 A:153-161,162-167,205-220,222-227 2bc2 d2bc2b_ B:39-49,50-56,60-76,80-84 1bc2 d1bc2b_ B:39-49,50-56,60-76,80-84 2doo d2doob1 B:29-41,42-48,52-67,68-75 1jje d1jjea_ A:29-41,42-48,52-67,68-75 4znb d4znbb_ B:51-62,63-69,73-89,90-97 1dd6 d1dd6a_ A:29-41,42-48,52-67,68-75 1jje d1jjeb_ B:29-41,42-48,52-67,68-75 1jjt d1jjtb_ B:29-41,42-48,52-67,68-75 1ddk d1ddka_ A:29-41,42-48,52-67,68-75 1dd6 d1dd6b_ B:29-41,42-48,52-67,68-75 2doo d2dooa1 A:29-41,42-48,52-67,68-75 1jjt d1jjta_ A:29-41,42-48,52-67,68-75 2gkl d2gkla1 A:67-77,78-84,88-105,108-114 1x8h d1x8ha_ A:67-77,78-84,88-105,108-114 1x8i d1x8ia_ A:67-77,78-84,88-105,108-114 1vgn d1vgna1 A:29-41,42-48,52-67,68-75 1vme d1vmeb2 B:153-161,162-167,205-220,222-227 2qdt d2qdta1 A:37-46,47-53,56-71,76-82 2fm6 d2fm6b1 B:68-77,78-84,87-103,108-114 1vgn d1vgnb1 B:29-41,42-48,52-67,68-75 2bmi d2bmib_ B:33-45,46-52,56-72,73-80 2qds d2qdsa1 A:67-77,78-84,88-105,108-114 1sml d1smla_ A:37-46,47-53,56-71,76-82 1x8g d1x8ga_ A:67-77,78-84,88-105,108-114 2hb9 d2hb9a1 A:68-77,78-84,87-103,108-114 2h6a d2h6ab1 B:68-77,78-84,87-103,108-114 2qed d2qeda1 A:112-119,121-126,141-156,159-164 1a8t d1a8tb_ B:33-45,46-52,56-72,73-80 2fu7 d2fu7a1 A:68-77,78-84,87-103,108-114 2fm6 d2fm6a1 A:68-77,78-84,87-103,108-114 2q0j d2q0jb1 B:162-170,171-177,197-212,215-220 2fu8 d2fu8b1 B:68-77,78-84,87-103,108-114 2fu9 d2fu9b1 B:68-77,78-84,87-103,108-114 2fu6 d2fu6b1 B:68-77,78-84,87-103,108-114 2fu6 d2fu6a1 A:68-77,78-84,87-103,108-114 2gfk d2gfkb1 B:68-77,78-84,87-103,108-114 2h6a d2h6aa1 A:68-77,78-84,87-103,108-114 1zkp d1zkpc1 C:138-146,147-154,159-167,170-175 2aio d2aioa1 A:67-76,78-84,87-103,108-114 2cg2 d2cg2a2 A:124-131,132-138,142-158,161-167 2cfu d2cfua2 A:124-131,132-138,142-158,161-167 3znb d3znbb_ B:167-173,174-181,198-214,217-222 2cfz d2cfza2 A:124-131,132-138,142-158,161-167 2gfj d2gfjb1 B:68-77,78-84,87-103,108-114 2cg3 d2cg3a2 A:124-131,132-138,142-158,161-167 2fu7 d2fu7b1 B:68-77,78-84,87-103,108-114 1znb d1znbb_ B:167-173,174-181,198-214,217-222 2bmi d2bmib_ B:150-156,157-164,181-197,200-205 2fu8 d2fu8a1 A:68-77,78-84,87-103,108-114 3znb d3znba_ A:50-62,63-69,73-89,90-97 3znb d3znbb_ B:50-62,63-69,73-89,90-97 2gfk d2gfka1 A:68-77,78-84,87-103,108-114 2fu9 d2fu9a1 A:68-77,78-84,87-103,108-114 1e5d d1e5db2 B:32-41,45-49,52-68,73-77 2znb d2znbb_ B:50-62,63-69,73-89,90-97 1znb d1znba_ A:167-173,174-181,198-214,217-222 1a7t d1a7tb_ B:33-45,46-52,56-72,73-80 1zkp d1zkpb1 B:138-146,147-154,159-167,170-176 2gfj d2gfja1 A:68-77,78-84,87-103,108-114 1qh3 d1qh3b_ B:112-121,127-133,148-164,166-172 1zkp d1zkpd1 D:138-146,147-154,159-167,170-176 2q0j d2q0ja1 A:23-30,32-38,41-57,61-67 1a7t d1a7ta_ A:33-45,46-52,56-72,73-80 2znb d2znbb_ B:167-173,174-181,198-214,217-222 1zkp d1zkpa1 A:138-146,147-154,159-167,170-176 2bmi d2bmia_ A:33-45,46-52,56-72,73-80 4znb d4znba_ A:50-62,63-69,73-89,90-97 1bc2 d1bc2a_ A:154-160,161-168,185-201,204-209 1hlk d1hlkb_ B:50-62,63-69,73-89,90-97 4znb d4znbb_ B:167-173,174-181,198-214,217-222 1mqo d1mqoa_ A:63-77,78-84,88-105,107-114 1znb d1znba_ A:50-62,63-69,73-89,90-97 1znb d1znbb_ B:50-62,63-69,73-89,90-97 3znb d3znba_ A:167-173,174-180,198-214,217-222 1a7t d1a7tb_ B:150-156,157-164,181-197,200-205 1a8t d1a8ta_ A:33-45,46-52,56-72,73-80 1ycf d1ycfd2 D:34-43,47-51,54-70,75-79 1kr3 d1kr3a_ A:50-62,63-69,73-89,90-97 1zkp d1zkpa1 A:19-27,28-34,38-47,53-57 1hlk d1hlka_ A:50-62,63-69,73-89,90-97 2bc2 d2bc2a_ A:154-160,161-168,185-201,204-209 2p97 d2p97a1 A:19-31,32-38,43-54,57-61 1kr3 d1kr3b_ B:167-173,174-181,198-214,217-222 1a7t d1a7ta_ A:150-156,157-164,181-197,200-205 1zkp d1zkpc1 C:19-27,28-34,38-47,53-57 1zkp d1zkpd1 D:19-27,28-34,38-47,53-57 4znb d4znba_ A:167-173,174-180,198-214,217-222 2bmi d2bmia_ A:150-156,157-164,181-197,200-205 1hlk d1hlka_ A:167-173,174-181,198-214,217-222 1bvt d1bvta_ A:36-49,50-56,60-76,78-84 2q0i d2q0ia1 A:23-30,32-38,41-57,61-67 1bmc d1bmca_ A:154-160,161-168,185-201,204-209 1a8t d1a8ta_ A:150-156,157-164,181-197,200-205 1e5d d1e5da2 A:31-41,45-49,52-68,73-77 1bc2 d1bc2b_ B:154-160,161-168,185-201,204-209 1zkp d1zkpb1 B:19-27,28-34,38-47,53-57 1k07 d1k07a_ A:67-76,78-84,87-103,108-114 1jt1 d1jt1a_ A:67-76,78-84,87-103,108-114 1l9y d1l9yb_ B:67-76,78-84,87-103,108-114 1k07 d1k07b_ B:67-76,78-84,87-103,108-114 1kr3 d1kr3a_ A:167-173,174-181,198-214,217-222 1hlk d1hlkb_ B:167-173,174-181,198-214,217-222 1dxk d1dxka_ A:154-160,161-168,185-201,204-209 1kr3 d1kr3b_ B:50-62,63-69,73-89,90-97 2znb d2znba_ A:167-173,174-180,198-214,217-222 1l9y d1l9ya_ A:67-76,78-84,87-103,108-114 1ycf d1ycfc2 C:34-43,47-51,54-70,75-79 1bvt d1bvta_ A:154-160,161-168,185-201,204-209 2p97 d2p97b1 B:20-31,32-38,43-54,57-61 2bc2 d2bc2b_ B:154-160,161-167,185-201,204-209 1mqo d1mqoa_ A:201-210,211-221,238-254,257-262 3bc2 d3bc2a_ A:154-160,161-168,185-201,204-209 1ko3 d1ko3a_ A:201-210,211-221,238-254,257-262 1p9e d1p9ea_ A:236-246,247-254,276-295,296-301 2fk6 d2fk6a1 A:20-27,31-39,41-50,55-61 2yz3 d2yz3a1 A:164-170,171-178,195-211,214-219 1ycg d1ycga2 A:33-43,47-51,57-70,75-79 1a8t d1a8tb_ B:150-156,157-163,181-197,200-205 1ko2 d1ko2a_ A:201-210,211-220,238-254,257-262 2gmn d2gmnb1 B:54-63,64-70,73-88,93-99 1e5d d1e5da2 A:148-157,158-164,201-216,220-225 1p9e d1p9eb_ B:236-246,247-254,276-295,296-301 1m2x d1m2xa_ A:202-210,211-221,238-254,257-262 2gmn d2gmna1 A:54-63,64-70,73-88,93-99 2yz3 d2yz3b1 B:164-170,171-177,195-211,214-219 1m2x d1m2xc_ C:202-210,211-221,238-254,257-262 1m2x d1m2xd_ D:63-77,78-84,88-105,107-114 1e5d d1e5db2 B:148-157,158-164,201-216,220-225 1m2x d1m2xa_ A:63-77,78-84,88-105,107-114 2e7y d2e7yb1 B:12-19,20-28,34-41,42-46 1xto d1xtoa_ A:39-46,51-55,59-68,81-86 1ycf d1ycfa2 A:34-44,46-51,54-70,75-79 1m2x d1m2xc_ C:63-77,78-84,88-105,110-114 1ycf d1ycfc2 C:150-159,160-166,203-218,222-227 1m2x d1m2xb_ B:202-210,211-220,238-254,257-262 1m2x d1m2xd_ D:202-210,211-220,238-254,257-262 1m2x d1m2xb_ B:63-77,78-84,88-105,110-114 2e7y d2e7ya1 A:11-19,20-28,34-41,42-46 2fk6 d2fk6a1 A:144-158,197-210,215-223,226-231 1ycf d1ycfb2 B:34-44,46-51,57-70,75-79 1ztc d1ztca1 A:143-151,155-161,179-190,193-198 1y44 d1y44b1 B:19-27,31-39,41-50,55-61 2cbn d2cbna1 A:19-29,30-40,42-51,58-62 1ztc d1ztcd1 D:143-151,155-161,179-190,193-198 1ztc d1ztcb1 B:143-151,155-161,179-190,193-198 1ztc d1ztcc1 C:143-151,155-161,179-190,193-198 1ycf d1ycfd2 D:150-159,160-166,203-218,222-227 1ycf d1ycfb2 B:150-159,160-166,203-218,222-227 1ych d1ychc2 C:150-159,160-166,203-218,222-227 1ycg d1ycgc2 C:150-159,160-166,203-218,222-227 1ych d1ychb2 B:150-159,160-166,203-218,222-227 1ych d1ychd2 D:150-159,160-166,203-218,222-227 1ycg d1ycgb2 B:150-159,160-166,203-218,222-227 1ycg d1ycgd2 D:150-159,160-166,203-218,222-227 2cg2 d2cg2a2 A:282-291,292-298,318-334,338-343 1ycg d1ycga2 A:150-159,160-166,203-218,222-227 1ych d1ycha2 A:150-159,160-166,203-218,222-227 2cfu d2cfua2 A:282-291,292-298,318-334,338-343 1jjt d1jjtb_ B:144-150,151-157,172-188,191-196 1ycg d1ycgb2 B:34-44,46-51,57-70,75-79 2cfz d2cfza2 A:282-291,292-298,318-334,338-343 1ztc d1ztcb1 B:143-151,155-161,166-176,193-198 1dd6 d1dd6b_ B:144-150,151-157,172-188,191-196 1x8g d1x8ga_ A:201-210,211-220,238-253,257-262 1dd6 d1dd6a_ A:144-150,151-157,172-188,191-196 2doo d2doob1 B:144-150,151-157,172-188,191-196 1vgn d1vgna1 A:144-150,151-157,172-188,191-196 1ztc d1ztca1 A:143-151,155-161,166-176,193-198 1ztc d1ztcc1 C:143-151,155-161,166-176,193-198 2gkl d2gkla1 A:201-210,211-220,238-253,257-262 1y44 d1y44a1 A:19-27,31-37,41-50,55-61 1ycg d1ycgd2 D:33-44,46-51,57-70,75-79 1jje d1jjeb_ B:144-150,151-157,172-188,191-196 1ycg d1ycgc2 C:33-44,46-51,57-70,75-79 1jjt d1jjta_ A:144-150,151-157,172-188,191-196 1ych d1ychc2 C:33-44,46-51,57-70,75-79 1ych d1ycha2 A:33-44,46-51,57-70,75-79 2cbn d2cbna1 A:145-160,199-211,216-224,227-232 1ych d1ychb2 B:33-44,46-51,57-70,75-79 2qds d2qdsa1 A:201-210,211-220,238-253,257-262 1ych d1ychd2 D:33-44,46-51,57-70,75-79 2doo d2dooa1 A:144-150,151-157,172-188,191-196 2cg3 d2cg3a2 A:284-291,292-298,318-334,338-342 1jje d1jjea_ A:144-150,151-157,172-188,191-196 1y44 d1y44a1 A:144-158,197-210,215-223,226-231 1xto d1xtoa_ A:180-189,190-197,204-214,215-222 1ddk d1ddka_ A:144-150,151-158,172-188,190-196 2q0i d2q0ia1 A:162-170,171-177,197-211,215-220 2q0j d2q0ja1 A:162-170,171-177,197-211,215-220 1wra d1wraa1 A:212-219,220-227,234-244,247-251 1vgn d1vgnb1 B:144-150,151-157,172-188,190-196 2q0j d2q0jb1 B:23-30,32-38,41-54,61-67 1qh5 d1qh5b_ B:112-121,128-133,148-163,167-172 1wra d1wrab1 B:212-219,220-227,234-244,247-251 2bib d2biba2 A:187-194,195-202,209-219,222-226 1x8h d1x8ha_ A:201-210,211-219,238-253,257-261 1x8i d1x8ia_ A:201-210,211-219,238-253,257-261 1ko2 d1ko2a_ A:63-77,78-84,88-105,107-114 2yz3 d2yz3b1 B:44-57,58-64,68-84,88-92 1ko3 d1ko3a_ A:63-77,78-84,88-105,107-114 1y44 d1y44b1 B:144-159,196-210,215-223,226-232 2yz3 d2yz3a1 A:44-57,58-64,68-84,88-92 2az4 d2az4b1 B:172-180,181-188,196-208,211-217 1qh3 d1qh3a_ A:112-121,127-133,148-163,166-172 1vjn d1vjnb_ B:93-102,103-110,117-125,128-134 1qh5 d1qh5a_ A:112-121,127-133,148-163,166-172 2az4 d2az4a1 A:172-180,181-188,196-208,211-217 1vjn d1vjna_ A:92-102,103-110,117-125,128-134 1p9e d1p9ea_ A:92-105,106-112,124-134,141-145 1p9e d1p9eb_ B:92-105,106-112,124-134,141-145 2i7x d2i7xa1 A:16-23,24-32,39-51,55-59 1vme d1vmea2 A:36-48,49-55,61-74,79-83 1vme d1vmeb2 B:36-48,49-55,58-74,79-83 1ztc d1ztcc1 C:17-31,32-38,44-56,63-67 2fu6 d2fu6b1 B:198-210,211-220,239-254,257-262 2fu6 d2fu6a1 A:198-210,211-220,239-254,257-261 2h6a d2h6aa1 A:198-210,211-220,239-254,257-261 2h6a d2h6ab1 B:198-210,211-220,239-254,257-261 2fu9 d2fu9a1 A:198-210,211-220,239-254,257-261 2fu8 d2fu8a1 A:198-210,211-220,239-254,257-261 2hb9 d2hb9a1 A:198-210,211-220,239-254,257-261 2fm6 d2fm6b1 B:198-210,211-220,239-254,257-261 1sml d1smla_ A:162-174,175-184,201-216,219-223 2fu9 d2fu9b1 B:198-210,211-220,239-254,257-261 2fu7 d2fu7b1 B:198-210,211-220,239-254,257-261 2fm6 d2fm6a1 A:198-210,211-220,239-254,257-261 2fu8 d2fu8b1 B:198-210,211-220,239-254,257-261 2aio d2aioa1 A:198-210,211-220,238-254,257-261 2gfk d2gfka1 A:198-210,211-220,239-254,257-261 2gfk d2gfkb1 B:198-210,211-220,239-254,257-261 2qdt d2qdta1 A:162-174,175-184,201-216,219-223 2fu7 d2fu7a1 A:198-210,211-220,239-254,257-261 2gfj d2gfja1 A:198-210,211-220,239-254,257-261 2gfj d2gfjb1 B:198-210,211-220,239-254,257-261 10. c.52.3 Eukaryotic RPB5 N-terminal domain Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest 1twg d1twge1 E:58-63,77-83,89-104,106-112 1k83 d1k83e1 E:58-63,77-83,89-104,106-112 1i50 d1i50e1 E:58-63,77-83,89-104,106-112 1twc d1twce1 E:59-63,77-83,89-104,106-112 1twh d1twhe1 E:59-63,77-83,89-104,106-112 1twa d1twae1 E:59-63,77-83,89-104,106-112 2nvy d2nvye1 E:58-63,77-83,89-104,106-112 1dzf d1dzfa1 A:59-63,77-83,89-104,106-112 2b63 d2b63e1 E:59-63,77-82,89-104,106-112 2e2h d2e2he1 E:58-64,76-82,95-104,106-111 2nvq d2nvqe1 E:59-63,77-83,89-104,106-112 2e2j d2e2je1 E:58-63,77-83,89-104,106-112 2ja6 d2ja6e1 E:59-63,77-82,89-104,106-112 2ja7 d2ja7e1 E:59-63,77-82,89-104,106-112 2ja7 d2ja7q1 Q:59-63,77-82,89-104,106-112 2nvz d2nvze1 E:59-64,76-82,95-104,106-111 2ja8 d2ja8e1 E:59-63,77-82,89-104,106-112 2ja5 d2ja5e1 E:59-63,77-82,89-104,106-112 2b8k d2b8ke1 E:59-63,77-82,89-104,106-112 1i6h d1i6he1 E:59-64,76-83,89-104,106-112 1i3q d1i3qe1 E:59-64,76-83,89-104,106-112 1twf d1twfe1 E:59-65,76-83,89-104,106-112 2nvt d2nvte1 E:58-64,76-83,89-104,106-112 2e2i d2e2ie1 E:59-63,77-83,89-104,106-112 2yu9 d2yu9e1 E:59-64,76-82,89-104,106-112 2nvx d2nvxe1 E:59-64,76-83,88-104,106-112 11. c.52.1 Restriction endonuclease-like Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest 1xmx d1xmxa_ A:293-299,300-309,317-332,334-342 2fok d2fokb4 B:450-455,462-469,478-495,514-521 1d2i d1d2ia_ A:84-88,89-95,98-116,125-133 1d2i d1d2ib_ B:84-88,89-95,98-116,125-133 1dfm d1dfmb_ B:84-88,89-95,98-116,125-133 2p0j d2p0ja1 A:119-123,124-130,133-152,155-162 1dfm d1dfma_ A:84-88,89-95,98-116,125-133 1sdo d1sdoa_ A:119-123,124-130,133-152,155-162 1y88 d1y88a2 A:38-44,45-54,62-77,82-89 1es8 d1es8a_ A:81-88,89-96,100-114,125-133 1fok d1foka4 A:450-456,461-469,478-495,514-521 2fok d2foka4 A:449-456,461-469,478-495,514-521 1avq d1avqa_ A:119-123,125-132,151-166,168-176 2bhn d2bhnc2 C:52-56,58-66,75-90,90-98 2bgw d2bgwa2 A:52-56,58-65,75-90,90-98 1avq d1avqc_ C:119-123,125-132,151-166,168-176 2ot9 d2ot9a1 A:68-74,76-85,88-100,100-107 1fiu d1fiuc_ C:140-146,178-189,191-209,214-222 2bhn d2bhna2 A:52-56,58-65,75-90,90-98 1fiu d1fiua_ A:140-146,178-189,191-209,214-222 1fiu d1fiud_ D:140-146,178-189,191-209,214-222 2g3w d2g3wb1 B:68-74,76-85,88-100,100-107 1na6 d1na6a2 A:299-303,318-326,327-336,345-350 1fiu d1fiub_ B:140-146,178-189,191-209,214-222 1gef d1gefd_ D:33-39,40-50,58-73,74-82 2g3w d2g3wa1 A:68-74,76-85,88-100,100-107 2jpd d2jpda1 A:129-133,135-142,149-165,165-173 1avq d1avqb_ B:119-123,125-132,151-166,168-176 1rzn d1rznb_ B:87-93,94-104,116-130,131-140 2bhn d2bhnb2 B:52-56,58-65,75-90,90-98 1rzn d1rzna_ A:87-93,94-104,116-130,131-140 1wdj d1wdjc_ C:86-91,112-118,123-138,140-148 1wdj d1wdja_ A:86-91,112-118,123-138,140-148 2p0j d2p0jb1 B:119-123,124-130,133-152,156-162 1w36 d1w36e3 E:1067-1073,1074-1083,1106-1127,1137-1143 1w36 d1w36b3 B:1067-1073,1074-1083,1106-1127,1137-1143 1cfr d1cfra_ A:134-140,182-191,194-220,227-234 1j24 d1j24a_ A:38-42,44-51,62-76,76-84 1j23 d1j23a_ A:38-42,44-51,62-76,76-84 1j22 d1j22a_ A:38-42,44-51,62-76,76-84 1j25 d1j25a_ A:38-42,44-51,62-76,76-84 1d02 d1d02a_ A:83-90,91-104,116-127,148-155 2a1i d2a1ia1 A:129-133,135-142,149-161,165-173 1f1z d1f1za2 A:114-120,125-133,139-157,159-165 1gef d1gefa_ A:33-39,40-51,58-73,74-83 1t0f d1t0fb2 B:114-120,125-133,139-157,159-165 1t0f d1t0fa2 A:114-120,125-133,139-157,159-165 1d02 d1d02b_ B:83-90,91-104,116-127,147-155 1f1z d1f1zb2 B:114-120,125-133,139-157,159-165 1ipi d1ipib_ B:33-39,40-51,58-73,74-83 1gef d1gefe_ E:33-39,40-51,58-73,74-83 1ipi d1ipia_ A:33-39,40-51,58-73,74-83 1gef d1gefb_ B:33-39,40-51,58-73,74-83 1wdj d1wdjb_ B:86-91,111-118,123-138,140-147 1dc1 d1dc1b_ B:212-218,234-243,246-272,275-282 1na6 d1na6b2 B:299-303,319-326,327-339,343-350 1dc1 d1dc1a_ A:212-218,234-243,246-272,275-282 1y1o d1y1oc_ C:86-92,93-104,115-129,130-140 1y1o d1y1oa_ A:86-92,93-104,115-129,130-140 1y1o d1y1ob_ B:86-92,93-104,115-129,130-140 1d02 d1d02b_ B:83-90,91-104,127-139,147-155 2jnw d2jnwa1 A:129-133,135-142,149-161,165-173 1d02 d1d02a_ A:83-90,91-104,127-139,148-155 1knv d1knva_ A:146-152,190-200,202-228,234-242 1y1o d1y1od_ D:86-92,93-104,115-129,130-140 1m0i d1m0ic_ C:55-59,61-68,71-86,89-95 1m0d d1m0db_ B:55-59,61-68,71-86,89-95 1knv d1knvb_ B:146-152,190-200,202-228,234-242 1wte d1wteb_ B:110-116,118-128,133-152,156-164 1wte d1wtea_ A:110-116,118-128,133-152,156-164 1m0i d1m0ib_ B:55-59,61-68,71-86,89-95 1m0d d1m0dc_ C:55-59,61-68,71-86,89-95 1qps d1qpsa_ A:91-100,102-115,141-158,164-171 1eyu d1eyua_ A:57-62,64-74,87-97,97-106 1m0d d1m0da_ A:55-59,61-68,71-86,89-95 1fzr d1fzrb_ B:55-59,61-68,71-86,89-95 1odg d1odga_ A:51-56,57-65,82-108,109-116 1m0i d1m0ia_ A:55-59,61-68,71-86,89-95 1qri d1qria_ A:91-100,102-115,141-158,164-171 1m0i d1m0id_ D:55-59,61-68,71-86,89-95 1m0d d1m0dd_ D:55-59,61-68,71-86,89-95 1fzr d1fzrc_ C:55-59,61-68,71-86,89-95 1fzr d1fzra_ A:55-59,61-68,71-86,89-95 1qrh d1qrha_ A:91-100,102-115,141-158,164-171 1ckq d1ckqa_ A:91-100,102-115,141-158,164-171 1cw0 d1cw0a_ A:51-56,57-64,82-108,109-115 1cl8 d1cl8a_ A:91-100,102-115,141-158,164-171 2okf d2okfa1 A:45-51,52-60,67-91,93-100 2okf d2okfb1 B:45-51,52-60,67-91,93-100 1wtd d1wtdb_ B:110-116,118-129,133-152,156-164 1qc9 d1qc9a_ A:91-100,102-115,141-158,164-171 1qc9 d1qc9c_ C:91-100,102-115,141-158,164-171 1ob9 d1ob9a_ A:39-45,46-57,64-79,80-92 1qc9 d1qc9b_ B:91-100,102-115,141-158,164-171 1eri d1eria_ A:91-100,102-115,140-158,164-171 2inb d2inba1 A:45-51,52-60,67-91,93-100 1fzr d1fzrd_ D:55-59,61-68,71-86,89-95 1vsr d1vsra_ A:51-56,57-64,82-108,109-115 1f0o d1f0oa_ A:58-62,64-74,87-97,98-106 1f0o d1f0ob_ B:58-62,64-74,87-97,98-106 1ob8 d1ob8b_ B:39-45,46-57,64-79,80-92 1ob8 d1ob8a_ A:39-45,46-57,64-79,80-92 1esg d1esga_ A:94-102,103-113,116-134,137-144 1esg d1esgb_ B:94-102,103-113,116-134,137-144 2pvi d2pvia_ A:57-62,64-74,87-97,98-106 1hh1 d1hh1a_ A:42-48,49-57,69-84,85-94 3pvi d3pvia_ A:57-62,64-74,87-97,98-106 1bam d1bama_ A:94-102,103-113,116-134,137-144 2pvi d2pvib_ B:57-62,64-74,87-97,98-106 1ni0 d1ni0b_ B:58-62,64-74,87-97,98-106 1eyu d1eyub_ B:57-62,64-74,87-97,97-106 1k0z d1k0zb_ B:58-62,64-74,87-97,98-106 1pvi d1pvia_ A:57-61,65-74,87-97,97-106 1k0z d1k0za_ A:58-62,64-74,87-97,98-106 1ni0 d1ni0a_ A:58-62,64-74,87-97,97-106 1h56 d1h56a_ A:58-62,64-74,87-97,98-106 1wtd d1wtda_ A:110-116,118-127,133-152,156-163 1pvi d1pvib_ B:57-62,64-74,87-97,98-106 1h56 d1h56b_ B:58-62,64-74,87-97,98-106 3bam d3bamb_ B:94-102,103-113,116-134,137-144 1pvu d1pvua_ A:58-62,64-74,87-97,97-106 1ni0 d1ni0c_ C:57-62,64-74,87-97,97-106 1pvu d1pvub_ B:58-62,64-74,87-97,98-106 3bam d3bama_ A:94-102,103-113,116-134,137-144 2bam d2bama_ A:94-102,103-113,116-134,137-144 1bhm d1bhma_ A:94-102,103-113,116-134,137-144 3pvi d3pvib_ B:57-62,64-74,87-97,97-106 1bhm d1bhmb_ B:94-102,103-113,116-134,137-145 2bam d2bamb_ B:94-102,103-113,116-134,137-145 12. d.52.3 Prokaryotic type KH domain (KH-domain type II) Prokaryotic and eukaryotic domains share a KH-motif but have different topologies ! Alpha-lytic protease prodomain-like core: alpha-beta(2)-(alpha)-beta; 2 layers: alpha/beta 3df3 d3df3c1 C:52-60,61-69,80-95,96-103 2qou d2qouc1 C:49-60,61-71,80-95,96-103 1vs7 d1vs7c1 C:51-60,61-69,82-95,96-104 2qb9 d2qb9c1 C:49-60,61-71,80-95,96-104 2qbb d2qbbc1 C:49-60,61-71,80-95,96-104 2aw7 d2aw7c1 C:51-60,61-69,82-95,96-104 2qbf d2qbfc1 C:49-60,61-71,80-95,96-105 2qbd d2qbdc1 C:49-60,61-71,80-95,96-105 2qoy d2qoyc1 C:49-60,61-71,78-95,96-105 2qbj d2qbjc1 C:49-60,61-71,80-95,96-104 3df1 d3df1c1 C:49-60,61-71,80-95,96-103 2qbh d2qbhc1 C:49-60,61-71,80-95,96-104 2qal d2qalc1 C:49-60,61-71,80-95,96-105 2qan d2qanc1 C:49-60,61-71,80-95,96-105 2z4k d2z4kc1 C:49-60,61-71,80-95,96-105 2z4m d2z4mc1 C:49-60,61-71,80-95,96-105 2qp0 d2qp0c1 C:50-60,61-70,80-95,97-105 2vhp d2vhpc1 C:50-60,61-70,82-95,97-104 2ow8 d2ow8d1 D:54-61,62-72,81-96,99-106 2qow d2qowc1 C:50-60,61-70,80-95,98-105 2vho d2vhoc1 C:49-60,61-71,80-95,98-104 2i2u d2i2uc1 C:50-57,61-70,82-95,96-102 2i2p d2i2pc1 C:49-60,61-71,78-95,96-105 2asb d2asba3 A:277-286,287-296,295-304,319-327 2atw d2atwc2 C:204-213,216-225,230-237,253-259 2atw d2atwa2 A:204-213,216-225,230-237,253-259 2asb d2asba2 A:204-213,216-225,230-237,253-259 1k0r d1k0ra2 A:204-213,216-225,230-237,253-260 1hh2 d1hh2p2 P:219-228,231-240,245-252,268-275 2atw d2atwa3 A:277-286,287-296,295-304,319-327 2uub d2uubc1 C:50-61,62-72,81-96,99-106 1k0r d1k0rb2 B:204-213,216-225,230-237,253-260 2uuc d2uucc1 C:50-61,62-72,81-96,99-106 1k0r d1k0ra3 A:277-286,287-295,307-318,319-326 1l2f d1l2fa2 A:219-228,231-240,245-252,268-274 2atw d2atwc3 C:277-286,287-295,295-304,319-326 2uua d2uuac1 C:50-61,62-72,81-96,99-106 1l2f d1l2fa3 A:292-301,302-310,322-333,334-341 1k0r d1k0rb3 B:277-286,287-295,307-318,319-326 1hh2 d1hh2p3 P:292-301,302-310,322-333,334-341 2j00 d2j00c1 C:50-61,62-72,83-96,97-106 2j02 d2j02c1 C:50-61,62-72,83-96,97-106 1l2f d1l2fa3 A:292-301,302-310,310-319,334-341 2uxc d2uxcc1 C:50-61,62-72,81-96,99-106 1vs5 d1vs5c1 C:50-60,61-70,80-95,96-105 2asb d2asba3 A:277-286,287-296,307-318,319-327 1xmo d1xmoc1 C:50-61,62-72,81-96,99-106 1k0r d1k0ra3 A:277-286,287-295,295-304,319-326 2avy d2avyc1 C:50-60,61-70,80-95,96-105 2atw d2atwc3 C:277-286,287-295,307-318,319-326 1hh2 d1hh2p3 P:292-301,302-310,310-319,334-341 2uu9 d2uu9c1 C:50-61,62-72,79-96,99-106 1i97 d1i97c1 C:52-61,62-71,81-96,101-106 1hnz d1hnzc1 C:50-61,62-72,81-96,97-106 1xnq d1xnqc1 C:50-61,62-72,81-96,99-106 2asb d2asba2 A:204-213,216-225,240-251,253-259 1xmq d1xmqc1 C:50-61,62-72,81-96,99-106 1n36 d1n36c1 C:53-61,62-70,81-93,99-105 2atw d2atwa2 A:204-213,216-225,240-251,253-259 1i94 d1i94c1 C:50-61,62-72,81-96,97-106 1xnr d1xnrc1 C:50-61,62-72,81-96,99-106 1hnx d1hnxc1 C:50-61,62-72,81-96,97-106 1k0r d1k0rb2 B:204-213,216-225,240-251,253-260 1k0r d1k0ra2 A:204-213,216-225,240-251,253-260 1hr0 d1hr0c1 C:50-61,62-72,81-96,97-106 2hgi d2hgif1 F:52-59,63-71,81-95,98-106 2atw d2atwa3 A:277-286,287-296,307-318,319-327 2atw d2atwc2 C:204-213,216-225,240-251,253-259 1hnw d1hnwc1 C:50-61,62-72,81-96,97-106 1k0r d1k0rb3 B:277-286,287-295,295-304,319-326 1j5e d1j5ec1 C:50-61,62-72,81-96,97-106 1n32 d1n32c1 C:50-61,62-72,81-96,99-106 2f4v d2f4vc1 C:50-61,62-72,81-96,97-104 1n33 d1n33c1 C:50-59,64-72,81-96,99-105 2hhh d2hhhc1 C:50-61,62-72,81-96,97-106 1l2f d1l2fa2 A:219-228,231-240,255-266,268-274 1fjg d1fjgc1 C:50-61,62-72,81-96,97-106 1i95 d1i95c1 C:50-61,62-72,81-96,98-106 1i96 d1i96c1 C:50-61,62-72,81-96,97-106 2zkq d2zkqc1 C:32-43,44-54,63-79,82-91 2e5l d2e5lc1 C:50-61,62-72,81-96,99-106 1wh9 d1wh9a_ A:24-34,35-44,54-69,74-82 2b9m d2b9mc1 C:50-61,62-72,81-96,98-106 2b64 d2b64c1 C:50-61,62-72,81-96,98-106 2b9o d2b9oc1 C:50-61,62-72,81-96,98-106 1hh2 d1hh2p2 P:219-228,231-240,255-266,268-275 1n34 d1n34c1 C:51-61,62-71,81-96,97-104 1x18 d1x18x2 X:220-225,226-238,251-270,272-282 1x1l d1x1lx2 X:220-225,226-238,251-270,272-282 1wf3 d1wf3a2 A:213-224,226-237,238-247,271-281 1ega d1egaa2 A:214-225,226-238,251-270,273-282 2hgp d2hgpf1 F:52-59,64-71,81-96,102-106 1wf3 d1wf3a2 A:213-224,226-237,250-269,271-281 2hgr d2hgrf1 F:52-59,64-71,81-95,102-106 1ega d1egaa2 A:214-225,226-238,239-248,273-282 1ega d1egab2 B:213-225,226-238,251-270,273-281 1ega d1egab2 B:213-225,226-238,239-248,273-281 1yl4 d1yl4f1 F:51-59,64-71,81-96,102-106 13. d.126.1 Pentein Pentein, beta/alpha-propeller duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis 1h70 d1h70a_ A:117-122,123-129,134-149,150-156 2abr d2abrd1 D:227-232,234-241,245-260,263-270 2abr d2abrb1 B:227-232,234-241,245-260,263-270 2aci d2acib1 B:227-232,234-241,245-260,263-270 1rxx d1rxxd_ D:227-232,234-241,245-260,263-270 1rxx d1rxxb_ B:227-232,234-241,245-260,263-270 2aaf d2aafb1 B:227-232,234-241,245-260,263-270 1rxx d1rxxa_ A:227-232,234-241,245-260,263-270 1bwd d1bwdb_ B:182-187,188-194,199-211,214-220 2aaf d2aafd1 D:227-232,234-241,245-260,263-270 2aci d2acid1 D:227-232,234-241,245-260,263-270 2a9g d2a9gb1 B:227-232,234-241,245-260,263-270 1rxx d1rxxc_ C:227-232,234-241,245-260,263-270 1bwd d1bwda_ A:182-187,188-194,199-211,214-220 2a9g d2a9gd1 D:227-232,234-241,245-260,263-270 1zbr d1zbra1 A:212-217,219-226,231-248,255-262 2aaf d2aafc1 C:227-232,234-241,245-260,263-270 2aaf d2aafa1 A:227-232,234-241,245-260,263-270 1wd9 d1wd9a3 A:409-415,424-432,444-455,457-463 2abr d2abrc1 C:227-232,234-241,245-260,263-270 2aci d2acic1 C:227-232,234-241,245-260,263-270 2a9g d2a9gc1 C:227-232,234-241,245-260,263-270 2cmu d2cmua1 A:277-281,282-289,291-306,307-314 2dw5 d2dw5a3 A:409-415,424-432,444-455,457-463 2jdw d2jdwa_ A:171-176,177-182,191-207,208-213 1jdw d1jdwa_ A:171-176,177-182,191-207,208-213 6jdw d6jdwa_ A:171-176,177-182,191-207,208-213 5jdw d5jdwa_ A:171-176,177-182,191-207,208-213 1wda d1wdaa3 A:409-415,424-432,444-455,457-463 8jdw d8jdwa_ A:171-176,177-182,191-207,208-213 2abr d2abra1 A:227-232,234-241,245-260,263-270 1jdx d1jdxa_ A:171-176,177-182,191-207,208-213 2dew d2dewx3 X:409-415,424-433,444-455,457-465 7jdw d7jdwa_ A:171-176,177-182,191-207,208-213 3jdw d3jdwa_ A:171-176,177-182,191-207,208-213 9jdw d9jdwa_ A:171-176,177-182,191-207,208-213 2dex d2dexx3 X:409-415,424-433,444-455,457-465 2jer d2jerc1 C:306-311,312-318,321-336,338-344 2jer d2jerf1 F:306-311,312-318,321-336,338-344 1ynf d1ynfb1 B:178-183,190-197,214-226,231-238 1ynf d1ynfa1 A:178-183,190-197,214-226,231-238 1ynf d1ynfe1 E:178-183,190-197,214-226,231-238 1ynf d1ynfc1 C:178-183,190-197,214-226,231-238 1ynf d1ynfd1 D:178-183,190-197,214-226,231-238 1xkn d1xkna_ A:289-293,294-300,303-318,320-326 1ynf d1ynff1 F:178-183,190-197,214-226,231-238 2dey d2deyx3 X:409-415,424-432,444-455,457-463 1ynh d1ynhd1 D:178-183,190-197,214-226,231-238 1yni d1ynic1 C:178-183,190-197,214-226,231-238 1yni d1ynib1 B:178-183,190-197,214-226,231-238 1yni d1ynid1 D:178-183,190-197,214-226,231-238 2a9g d2a9ga1 A:227-231,234-241,245-260,263-270 1ynh d1ynhc1 C:178-183,190-197,214-226,231-238 1yni d1ynia1 A:178-183,190-197,214-226,231-238 1ynh d1ynhb1 B:178-183,190-197,214-226,231-238 1zbr d1zbra1 A:280-284,285-291,294-309,311-317 1ynh d1ynha1 A:178-183,190-197,214-226,231-238 2jdx d2jdxa_ A:257-262,263-268,274-286,289-294 2jdw d2jdwa_ A:257-262,263-268,274-286,289-294 9jdw d9jdwa_ A:257-262,263-268,274-286,289-294 1jdw d1jdwa_ A:257-262,263-268,274-286,289-294 1jdx d1jdxa_ A:257-262,263-268,274-286,289-294 4jdw d4jdwa_ A:257-262,263-268,274-286,289-294 1wd8 d1wd8a3 A:409-415,424-432,444-455,458-463 1zbr d1zbrb1 B:212-217,219-225,231-248,255-261 8jdw d8jdwa_ A:257-262,263-268,274-286,289-294 5jdw d5jdwa_ A:257-262,263-268,274-286,289-294 6jdw d6jdwa_ A:257-262,263-268,274-286,289-294 7jdw d7jdwa_ A:257-262,263-268,274-286,289-294 3jdw d3jdwa_ A:257-262,263-268,274-286,289-294 2aci d2acia1 A:227-231,234-241,245-260,263-270 1g61 d1g61b_ B:4154-4158,4159-4164,4168-4180,4182-4187 1zbr d1zbrb1 B:280-284,285-291,294-309,311-317 1h70 d1h70a_ A:67-72,73-78,92-101,103-107 2jer d2jerd1 D:307-311,312-318,321-336,338-344 7jdw d7jdwa_ A:362-366,368-374,376-387,388-394 2ewo d2ewoh1 H:311-315,316-322,325-340,342-348 2jer d2jerb1 B:307-311,312-318,321-336,338-344 2q3u d2q3ua1 A:314-318,319-326,328-344,346-353 5jdw d5jdwa_ A:362-366,368-374,376-387,388-394 9jdw d9jdwa_ A:362-366,368-374,376-387,388-394 1xkn d1xkna_ A:221-226,228-235,240-256,264-271 3jdw d3jdwa_ A:362-366,368-374,376-387,388-394 2jer d2jera1 A:307-311,312-318,321-336,338-344 2jer d2jere1 E:307-311,312-318,321-336,338-344 2jdx d2jdxa_ A:362-366,368-374,376-387,388-394 1vkp d1vkpa_ A:314-318,319-325,328-344,346-352 1vkp d1vkpb_ B:314-318,319-325,328-344,346-352 1ynh d1ynhc1 C:252-257,258-264,269-282,284-290 1s9r d1s9ra_ A:162-167,168-173,177-194,201-206 1s9r d1s9rb_ B:162-167,168-173,177-194,201-206 1yni d1ynic1 C:307-313,315-323,328-342,344-352 2q3u d2q3ub1 B:314-318,319-325,328-344,346-352 1yni d1ynib1 B:307-313,315-323,328-342,344-352 1yni d1ynid1 D:307-313,315-323,328-342,344-352 1h70 d1h70a_ A:205-209,210-216,218-229,230-236 1yni d1ynic1 C:252-257,258-264,269-282,284-290 1ynh d1ynhd1 D:252-257,258-264,269-282,284-290 1yni d1ynia1 A:252-257,258-264,269-282,284-290 1yni d1ynid1 D:252-257,258-264,269-282,284-290 1ynf d1ynfa1 A:252-257,258-264,269-282,284-290 1yni d1ynib1 B:252-257,258-264,269-282,284-290 1ynf d1ynfb1 B:252-257,258-264,269-282,284-290 1g61 d1g61a_ A:2154-2158,2159-2164,2168-2180,2183-2187 1ynf d1ynfd1 D:252-257,258-264,269-282,284-290 1lxy d1lxyb_ B:162-167,168-173,177-194,201-206 1vkp d1vkpb_ B:228-232,235-241,247-263,271-277 1ynf d1ynfa1 A:111-117,124-130,135-154,158-164 1ynf d1ynfc1 C:111-117,124-130,135-154,158-164 1ynf d1ynff1 F:252-257,258-264,269-282,284-290 1ynf d1ynfd1 D:111-117,124-130,135-154,158-164 2jdx d2jdxa_ A:171-176,177-182,196-207,208-213 1yni d1ynia1 A:307-313,315-323,328-342,346-352 1ynf d1ynfe1 E:252-257,258-264,269-282,284-290 1ynf d1ynff1 F:111-117,124-130,135-154,158-164 1ynh d1ynha1 A:252-257,258-264,269-282,284-290 1ynf d1ynfb1 B:111-117,124-130,135-154,158-164 1ynh d1ynhb1 B:307-313,315-323,328-342,344-352 1ynf d1ynfc1 C:252-257,258-264,269-282,284-290 1ynf d1ynfe1 E:111-117,124-130,135-154,158-164 1ynh d1ynhb1 B:252-257,258-264,269-282,284-290 1vkp d1vkpa_ A:228-232,235-241,247-263,271-277 1lxy d1lxya_ A:162-167,168-173,177-194,201-206 1ynh d1ynha1 A:307-313,315-323,328-342,344-352 2abr d2abrd1 D:361-365,367-373,375-386,387-393 2cmu d2cmua1 A:208-213,215-221,227-243,251-257 2dex d2dexx3 X:351-360,361-370,376-386,387-393 2a9g d2a9gb1 B:361-365,367-373,375-386,387-393 4jdw d4jdwa_ A:171-176,177-182,196-207,208-213 2abr d2abrc1 C:361-365,367-373,375-386,387-393 1ynh d1ynhd1 D:307-313,315-323,328-342,344-352 1wda d1wdaa3 A:351-360,361-370,376-386,388-393 2dew d2dewx3 X:351-360,361-370,376-386,388-393 2dw5 d2dw5a3 A:351-360,361-370,376-386,388-393 1ynh d1ynhc1 C:307-313,315-323,328-342,344-352 2a9g d2a9gd1 D:361-365,367-373,375-386,387-393 2q3u d2q3ua1 A:228-232,235-241,247-263,271-277 1lxy d1lxyb_ B:216-221,223-231,234-249,254-261 2aaf d2aafd1 D:361-365,367-373,375-386,387-393 1ynf d1ynfe1 E:307-313,315-323,328-341,346-352 1s9r d1s9ra_ A:216-221,223-231,234-249,254-261 1ynf d1ynff1 F:307-313,315-323,328-341,346-352 1ynf d1ynfc1 C:307-313,315-323,328-341,346-352 1ynf d1ynfd1 D:307-313,315-323,328-341,346-352 1ynf d1ynfa1 A:307-313,315-323,328-341,346-352 2ewo d2ewoi1 I:226-230,233-239,245-262,269-275 2ewo d2ewog1 G:226-230,233-239,245-262,269-275 2ewo d2ewol1 L:226-230,233-239,245-262,269-275 2ewo d2ewoa1 A:226-230,233-239,245-262,269-275 2ewo d2ewoe1 E:226-230,233-239,245-262,269-275 2ewo d2ewod1 D:226-230,233-239,245-262,269-275 2ewo d2ewoc1 C:226-230,233-239,245-262,269-275 2ewo d2ewoj1 J:226-230,233-239,245-262,269-275 1s9r d1s9rb_ B:216-221,223-231,234-249,254-261 2ewo d2ewof1 F:226-230,233-239,245-262,269-275 2ewo d2ewok1 K:226-230,233-239,245-262,269-275 2ewo d2ewob1 B:226-230,233-239,245-262,269-275 1yni d1ynia1 A:111-117,123-130,141-154,158-164 1xkn d1xkna_ A:160-164,166-173,185-198,200-207 1ynh d1ynha1 A:111-117,123-130,141-154,158-164 1ynf d1ynfb1 B:307-313,315-323,328-341,346-352 1bwd d1bwdb_ B:109-114,115-120,134-145,146-151 1bwd d1bwda_ A:109-114,115-120,134-145,146-151 2a9g d2a9gc1 C:361-365,367-373,375-386,387-393 2ewo d2ewoj1 J:311-315,316-322,325-340,342-348 2ewo d2ewoc1 C:311-315,316-322,325-340,342-348 2ewo d2ewoe1 E:311-315,316-322,325-340,342-348 2ewo d2ewoi1 I:311-315,316-322,325-340,342-348 2ewo d2ewod1 D:311-315,316-322,325-340,342-348 2ewo d2ewol1 L:311-315,316-322,325-340,342-348 2ewo d2ewok1 K:311-315,316-322,325-340,342-348 2ewo d2ewof1 F:311-315,316-322,325-340,342-348 2ewo d2ewoa1 A:311-315,316-322,325-340,342-348 2ewo d2ewob1 B:311-315,316-322,325-340,342-348 2ewo d2ewog1 G:311-315,316-322,325-340,342-348 2aaf d2aafc1 C:167-172,173-178,182-199,207-212 1g62 d1g62a_ A:16-20,22-27,31-43,46-51 1rxx d1rxxa_ A:167-172,173-178,182-199,207-212 2aci d2acia1 A:167-172,173-178,182-199,207-212 2aci d2acib1 B:167-172,173-178,182-199,207-212 1rxx d1rxxc_ C:167-172,173-178,182-199,207-212 2aaf d2aafa1 A:167-172,173-178,182-199,207-212 1rxx d1rxxb_ B:167-172,173-178,182-199,207-212 2aaf d2aafb1 B:167-172,173-178,182-199,207-212 2abr d2abrd1 D:167-172,173-178,182-199,207-212 1rxx d1rxxd_ D:167-172,173-178,182-199,207-212 2aci d2acic1 C:167-172,173-178,182-199,207-212 2q3u d2q3ua1 A:97-102,114-122,136-151,153-160 2ewo d2ewoh1 H:226-230,233-239,245-262,269-275 1lxy d1lxya_ A:216-220,223-231,234-249,254-261 2aci d2acid1 D:167-172,173-178,182-199,207-212 2ewo d2ewof1 F:103-108,112-118,133-149,150-155 2ewo d2ewoj1 J:103-108,112-118,133-149,150-155 2ewo d2ewoe1 E:103-108,112-118,133-149,150-155 1h70 d1h70a_ A:166-171,173-178,184-191,190-195 2ewo d2ewoi1 I:103-108,112-118,133-149,150-155 2ewo d2ewol1 L:103-108,112-118,133-149,150-155 2ewo d2ewoa1 A:103-108,112-118,133-149,150-155 2ewo d2ewog1 G:103-108,112-118,133-149,150-155 2ewo d2ewob1 B:103-108,112-118,133-149,150-155 2ewo d2ewod1 D:103-108,112-118,133-149,150-155 2ewo d2ewok1 K:103-108,112-118,133-149,150-155 2ewo d2ewoc1 C:103-108,112-118,133-149,150-155 2abr d2abrb1 B:167-172,173-178,182-199,207-212 2abr d2abrc1 C:167-172,173-178,182-199,207-212 2dw5 d2dw5a3 A:589-593,594-600,610-624,625-631 2aaf d2aafd1 D:167-172,173-178,182-199,207-212 2a9g d2a9gc1 C:167-172,173-178,182-199,207-212 2dew d2dewx3 X:589-593,594-600,610-624,625-631 1wda d1wdaa3 A:589-593,594-600,610-624,625-631 2a9g d2a9gb1 B:167-172,173-178,182-199,207-212 2a9g d2a9gd1 D:167-172,173-178,182-199,207-212 2a9g d2a9ga1 A:167-172,173-178,182-199,207-212 1wd9 d1wd9a3 A:589-593,594-600,610-624,625-631 2dex d2dexx3 X:589-593,594-600,610-624,625-631 1zbr d1zbra1 A:150-154,156-162,175-188,190-196 2abr d2abra1 A:167-172,173-178,182-199,207-212 2dey d2deyx3 X:589-593,594-600,610-624,625-631 1zbr d1zbra1 A:90-96,97-105,115-129,135-141 1wd8 d1wd8a3 A:589-593,594-599,610-624,625-630 2jer d2jere1 E:222-226,229-235,241-257,265-271 2jer d2jerd1 D:222-226,229-235,243-257,265-271 2jer d2jerc1 C:222-226,229-235,241-257,265-271 2jer d2jerb1 B:222-226,229-235,241-257,265-271 1vkp d1vkpa_ A:97-102,114-121,136-151,153-158 1ynh d1ynhb1 B:111-118,123-130,135-154,158-164 1vkp d1vkpb_ B:97-102,114-121,136-151,153-158 2jer d2jerf1 F:99-104,108-114,130-145,146-151 2jer d2jera1 A:99-104,108-114,130-145,146-151 1yni d1ynib1 B:111-117,123-130,135-154,158-164 1yni d1ynic1 C:111-117,123-130,135-154,158-164 1yni d1ynid1 D:111-117,123-130,135-154,158-164 2jer d2jera1 A:222-226,229-235,241-257,265-271 2jer d2jerd1 D:99-104,108-114,130-145,146-151 2jer d2jerf1 F:222-226,229-235,241-257,265-271 1zbr d1zbrb1 B:90-96,97-105,115-129,135-141 1ynh d1ynhd1 D:111-118,123-130,135-154,158-164 2ewo d2ewoh1 H:103-108,112-118,133-149,150-155 1ynh d1ynhc1 C:111-117,123-130,135-154,158-164 1wd9 d1wd9a3 A:352-360,361-369,376-386,388-393 2dew d2dewx3 X:475-481,486-493,532-558,563-568 2q3u d2q3ub1 B:97-102,114-121,136-151,153-158 5jdw d5jdwa_ A:307-312,314-319,326-334,335-339 1bwd d1bwdb_ B:231-235,238-243,253-260,259-264 2dex d2dexx3 X:475-482,486-493,532-558,563-568 1wda d1wdaa3 A:475-482,486-493,532-558,563-568 1s9r d1s9rb_ B:273-278,280-285,314-324,327-332 2dey d2deyx3 X:475-482,486-493,532-558,563-568 1bwd d1bwda_ A:231-235,238-243,253-260,259-264 2dw5 d2dw5a3 A:475-482,486-493,532-558,563-568 1wd8 d1wd8a3 A:475-482,486-493,532-558,563-568 2dey d2deyx3 X:351-360,361-370,374-386,388-393 1lxy d1lxyb_ B:273-278,280-285,314-324,327-332 2jer d2jere1 E:99-105,107-114,130-145,146-151 1wd9 d1wd9a3 A:475-481,486-493,532-558,563-568 2jdw d2jdwa_ A:307-311,314-319,326-334,335-339 4jdw d4jdwa_ A:307-311,314-319,326-334,335-339 1s9r d1s9ra_ A:273-278,280-285,314-324,327-332 1jdw d1jdwa_ A:307-311,314-319,326-334,335-339 1lxy d1lxya_ A:273-278,280-285,314-324,327-332 8jdw d8jdwa_ A:307-311,314-319,326-334,335-339 9jdw d9jdwa_ A:307-311,314-319,326-334,335-339 3jdw d3jdwa_ A:307-311,314-319,326-334,335-339 1jdx d1jdxa_ A:307-311,314-319,326-334,335-339 7jdw d7jdwa_ A:307-311,314-319,326-334,335-339 6jdw d6jdwa_ A:307-311,314-319,326-334,335-339 2jer d2jerb1 B:99-105,107-114,130-145,146-151 2jdx d2jdxa_ A:307-311,314-319,326-334,335-339 2jer d2jerc1 C:99-105,107-114,130-145,146-151 2aci d2acia1 A:282-287,289-294,324-334,338-343 2a9g d2a9gb1 B:282-287,289-294,324-334,338-343 2a9g d2a9gc1 C:282-287,289-294,324-334,338-343 1rxx d1rxxa_ A:282-287,289-294,324-334,338-343 2aaf d2aafb1 B:282-287,289-294,324-334,338-343 1rxx d1rxxb_ B:282-287,289-294,324-334,338-343 2abr d2abrc1 C:282-287,289-294,324-334,338-343 1rxx d1rxxc_ C:282-287,289-294,324-334,338-343 2abr d2abrd1 D:282-287,289-294,324-334,338-343 2a9g d2a9gd1 D:282-287,289-294,324-334,338-343 2a9g d2a9ga1 A:282-287,289-294,324-334,338-343 2aaf d2aafd1 D:282-287,289-294,324-334,338-343 2aci d2acib1 B:282-287,289-294,324-334,338-343 1rxx d1rxxd_ D:282-287,289-294,324-334,338-343 2abr d2abrb1 B:282-287,289-294,324-334,338-343 2aci d2acid1 D:282-287,289-294,324-334,338-343 2aaf d2aafa1 A:282-287,289-294,324-334,338-343 2aci d2acic1 C:282-287,289-294,324-334,338-343 2abr d2abra1 A:282-287,289-294,324-334,338-343 1xkn d1xkna_ A:101-108,109-119,129-145,147-152 2aaf d2aafc1 C:282-287,289-294,324-334,338-343 2cmu d2cmua1 A:89-95,96-103,114-128,133-137 1h70 d1h70a_ A:67-72,73-78,82-93,103-107 15. d.322.1 PHP14-like PHP14-like beta(3)-alpha-beta(2)-alpha-beta; 3 layers, a/b/a; mixed beta-sheet, half-barrel, order: 132456; strands 2 and 5 are antiparallel to the rest 2hw4 d2hw4a1 A:74-84,85-94,101-114,116-121 2nmm d2nmma1 A:74-84,85-94,101-114,116-121 2nmm d2nmmc1 C:70-84,85-94,101-114,116-121 2nmm d2nmmb1 B:69-84,85-94,101-114,116-121 1xdo d1xdob2 B:218-230,259-265,269-281,285-291 1xdo d1xdoa2 A:218-230,259-265,269-281,285-291 1xdp d1xdpb2 B:218-230,259-265,269-281,286-291 1xdp d1xdpa2 A:218-230,259-265,269-281,286-291 2o8r d2o8ra2 A:222-234,265-270,274-286,291-295 2ozw d2ozwa1 A:69-81,87-94,101-114,117-121 2ozx d2ozxa1 A:68-82,87-94,101-114,118-122 2ai6 d2ai6a1 A:69-81,87-94,101-113,117-121 16. c.77.1 Isocitrate/Isopropylmalate dehydrogenase-like the constituent families form similar dimers ! Isocitrate/Isopropylmalate dehydrogenase-like consists of two intertwined (sub)domains related by pseudo dyad; duplication ! 3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest 1ps7 d1ps7a_ A:149-156,157-164,177-197,259-265 1ps7 d1ps7c_ C:149-156,157-164,177-197,259-265 1idf d1idfa_ A:125-132,148-155,202-221,297-302 1ps6 d1ps6a_ A:149-156,157-164,177-197,259-265 1bl5 d1bl5a_ A:125-132,148-155,202-221,297-302 1ptm d1ptma_ A:149-156,157-164,177-197,259-265 1iso d1isoa_ A:125-132,148-155,202-221,297-302 1hqs d1hqsa_ A:116-123,139-146,193-212,301-306 1hqs d1hqsb_ B:116-123,139-146,193-212,301-306 1r8k d1r8ka_ A:149-156,157-164,177-197,259-265 1ika d1ikaa_ A:124-132,148-155,202-221,297-302 1ptm d1ptmb_ B:149-156,157-164,177-197,259-265 1ps7 d1ps7b_ B:149-156,157-164,177-197,259-265 1ps6 d1ps6b_ B:149-156,157-164,177-197,259-265 1ps7 d1ps7d_ D:149-156,157-164,177-197,259-265 1idc d1idca_ A:125-133,147-155,202-221,297-302 1r8k d1r8kb_ B:149-156,157-164,177-197,259-265 1a05 d1a05a_ A:101-108,128-135,163-182,236-241 1a05 d1a05b_ B:101-108,128-135,163-182,236-241 1idd d1idda_ A:125-133,147-155,202-221,297-302 1ide d1idea_ A:125-133,147-155,202-221,297-302 1ai3 d1ai3a_ A:125-133,147-155,202-221,297-302 1sjs d1sjsa_ A:125-133,147-155,202-221,297-302 1v53 d1v53b1 B:102-110,128-136,163-182,236-241 1ai2 d1ai2a_ A:125-133,147-155,202-221,297-302 1p8f d1p8fa_ A:125-133,147-155,202-221,297-302 2af4 d2af4c1 C:148-156,165-171,179-199,268-272 1pb3 d1pb3a_ A:125-133,147-155,202-221,297-302 1cw4 d1cw4a_ A:125-133,147-155,202-221,297-302 4icd d4icda_ A:125-133,147-155,202-221,297-302 2ayq d2ayqb_ B:102-110,128-136,163-182,236-241 1pb1 d1pb1a_ A:125-133,147-155,202-221,297-302 1u7n d1u7na_ A:120-128,134-140,148-168,220-224 9icd d9icda_ A:125-133,147-155,202-221,297-302 1cw1 d1cw1a_ A:125-133,147-155,202-221,297-302 1cw7 d1cw7a_ A:125-133,147-155,202-221,297-302 1u7n d1u7nb_ B:120-128,134-140,148-168,220-224 1grp d1grpa_ A:125-133,147-155,202-221,297-302 1vmi d1vmia_ A:147-156,161-166,174-194,263-267 6icd d6icda_ A:125-133,147-155,202-221,297-302 7icd d7icda_ A:125-133,147-155,202-221,297-302 1qzt d1qztb_ B:148-156,165-171,179-199,268-272 2af3 d2af3c1 C:148-156,165-171,179-199,268-272 1gro d1groa_ A:125-133,147-155,202-221,297-302 3icd d3icda_ A:125-133,147-155,202-221,297-302 2g4o d2g4ob1 B:93-101,115-123,151-170,225-230 1v53 d1v53a1 A:102-110,128-136,163-182,236-241 2af4 d2af4d1 D:148-156,165-171,179-199,268-272 2g4o d2g4od1 D:93-101,115-123,151-170,225-230 8icd d8icda_ A:125-133,147-155,202-221,297-302 1hj6 d1hj6a_ A:125-133,147-155,202-221,297-302 2af3 d2af3d1 D:148-157,165-171,179-199,268-272 2g4o d2g4oa1 A:93-101,115-123,151-170,225-230 1qzt d1qztd_ D:148-156,165-171,179-199,268-272 1w0d d1w0db_ B:93-101,115-123,151-170,225-230 2ayq d2ayqa_ A:102-110,128-136,163-182,236-241 1qzt d1qztc_ C:148-157,165-171,179-199,268-272 1w0d d1w0dd_ D:93-101,115-123,151-170,225-230 1qzt d1qzta_ A:148-157,165-171,179-199,268-272 5icd d5icda_ A:125-133,147-155,202-221,297-302 1w0d d1w0da_ A:93-101,115-123,151-170,225-230 1gc8 d1gc8a_ A:1100-1108,1126-1134,1158-1177,1231-1237 1vi1 d1vi1b_ B:121-130,132-139,147-167,219-223 1vi1 d1vi1a_ A:121-130,132-139,147-167,219-223 1wpw d1wpwb_ B:91-99,110-118,142-161,214-219 1wpw d1wpwa_ A:91-99,110-118,142-161,214-219 1cnz d1cnzb_ B:105-113,132-140,168-187,241-246 1cm7 d1cm7b_ B:105-113,132-140,168-187,241-247 1gc8 d1gc8b_ B:98-108,126-134,158-177,231-237 1dr0 d1dr0b_ B:98-108,126-134,158-177,231-236 1dr0 d1dr0a_ A:98-108,126-134,158-177,231-236 1dr8 d1dr8b_ B:98-108,126-134,158-177,231-236 1cnz d1cnza_ A:105-113,132-140,168-187,241-246 1dr8 d1dr8a_ A:97-108,126-134,158-177,231-236 1osj d1osjb_ B:98-108,126-134,158-177,231-237 1cm7 d1cm7a_ A:105-113,132-140,168-187,241-246 1hex d1hexa_ A:98-108,126-134,158-177,231-236 1osj d1osja_ A:98-108,126-134,158-177,231-237 1osi d1osic_ C:98-108,126-134,158-177,231-237 1dpz d1dpzb_ B:98-108,126-134,158-177,231-237 1idm d1idma_ A:96-106,124-132,156-175,229-234 1osi d1osid_ D:98-108,126-134,158-177,231-237 1dpz d1dpza_ A:98-108,126-134,158-177,231-237 1wal d1wala_ A:98-108,126-134,158-177,231-236 1ipd d1ipda_ A:98-108,126-134,158-177,231-236 2g4o d2g4oc1 C:93-101,115-123,151-171,225-230 1osi d1osia_ A:98-108,126-134,158-177,231-236 1itw d1itwd_ D:140-147,404-415,462-481,535-543 1g2u d1g2ua_ A:98-108,126-134,158-177,231-236 1itw d1itwa_ A:140-147,404-415,462-481,535-543 1itw d1itwb_ B:140-147,404-415,462-481,535-543 1osi d1osib_ B:98-108,126-134,158-177,231-236 1itw d1itwc_ C:140-147,404-415,462-481,535-543 1w0d d1w0dc_ C:93-101,115-123,151-171,225-230 1j1w d1j1wd_ D:140-147,404-415,462-481,535-544 1j1w d1j1wc_ C:140-147,404-415,462-481,535-544 1j1w d1j1wa_ A:140-147,404-415,462-481,535-544 1j1w d1j1wb_ B:140-147,404-415,462-481,535-544 1vlc d1vlca_ A:99-109,128-136,160-179,233-238 1xad d1xada_ A:98-108,126-134,158-178,231-236 1xac d1xaca_ A:98-108,126-134,158-178,231-236 1gc9 d1gc9a_ A:98-108,126-134,158-178,231-237 1xab d1xaba_ A:98-108,126-134,158-178,231-236 1xaa d1xaaa_ A:98-108,126-134,158-178,231-236 1t09 d1t09b_ B:105-112,125-133,185-204,262-270 1xco d1xcoe_ E:150-158,159-166,174-193,262-267 1td9 d1td9a_ A:149-158,159-166,174-193,262-266 1xco d1xcob_ B:149-158,159-166,174-193,262-267 1t09 d1t09a_ A:105-112,125-133,185-204,262-270 1t0l d1t0la_ A:105-112,125-134,185-204,262-270 1xco d1xcod_ D:149-158,159-166,174-193,262-267 1t0l d1t0lc_ C:105-112,125-134,185-204,262-270 1xco d1xcof_ F:149-158,159-166,174-193,262-267 1td9 d1td9b_ B:149-158,159-166,174-193,262-267 1xco d1xcoc_ C:149-158,159-166,174-193,262-267 1t0l d1t0ld_ D:105-112,125-134,185-204,262-270 1td9 d1td9f_ F:149-158,159-166,174-193,262-267 1td9 d1td9d_ D:149-158,159-166,174-193,262-267 1td9 d1td9c_ C:149-158,159-166,174-193,262-267 1xco d1xcoa_ A:149-158,159-166,174-193,262-267 1t0l d1t0lb_ B:105-112,125-134,185-204,262-270 1td9 d1td9e_ E:149-158,159-166,174-193,262-267 1lwd d1lwda_ A:106-113,126-135,185-204,262-270 1lwd d1lwdb_ B:106-113,126-135,185-204,262-270 1r5j d1r5ja_ A:151-161,162-170,178-197,266-270 1r5j d1r5jb_ B:151-161,162-170,178-197,266-270 1ide d1idea_ A:125-133,147-155,234-254,297-302 17. d.218.1 Nucleotidyltransferase Nucleotidyltransferase core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123 2o5a d2o5aa1 A:19-27,35-43,44-63,84-92 2o5a d2o5ab1 B:19-27,35-43,44-63,84-92 2id1 d2id1b1 B:19-27,35-42,44-63,84-91 2id1 d2id1a1 A:19-27,35-42,44-63,84-91 1ueu d1ueua2 A:41-45,59-66,72-84,106-115 1vj7 d1vj7a2 A:236-241,267-272,274-290,319-328 1uet d1ueta2 A:41-45,59-66,71-84,106-115 2zha d2zhaa2 A:41-45,59-66,71-88,106-115 1bpd d1bpda3 A:173-178,190-197,207-222,252-260 1jn3 d1jn3a2 A:173-178,190-197,207-222,252-260 1zqz d1zqza2 A:173-178,190-197,207-222,252-260 1uev d1ueva2 A:41-45,59-66,70-84,106-115 1rpl d1rpla2 A:173-178,190-197,207-222,252-260 7icl d7icla4 A:173-178,190-197,207-222,252-260 2bpf d2bpfa4 A:173-178,190-197,207-222,252-260 2van d2vana2 A:173-178,190-197,207-222,252-260 1zqc d1zqca4 A:173-178,190-197,207-222,252-260 9ich d9icha4 A:173-178,190-197,207-222,252-260 2bpc d2bpca2 A:173-178,190-197,207-222,252-260 1vfg d1vfga2 A:11-16,30-38,39-52,70-78 1zqr d1zqra4 A:173-178,190-197,207-222,252-260 7icf d7icfa4 A:173-178,190-197,207-222,252-260 1zqv d1zqva2 A:173-178,190-197,207-222,252-260 7ics d7icsa4 A:173-178,190-197,207-222,252-260 1vfg d1vfgb2 B:11-16,30-38,39-52,70-78 9icq d9icqa4 A:173-178,190-197,207-222,252-260 9ict d9icta4 A:173-178,190-197,207-222,252-260 8ice d8icea4 A:173-178,190-197,207-222,252-260 7icu d7icua4 A:173-178,190-197,207-222,252-260 2gws d2gwsi3 I:410-415,427-434,440-455,486-495 1zqo d1zqoa4 A:173-178,190-197,207-222,252-260 8ics d8icsa4 A:173-178,190-197,207-222,252-260 1zqu d1zqua2 A:173-178,190-197,207-222,252-260 1zqe d1zqea4 A:173-178,190-197,207-222,252-260 1zqf d1zqfa4 A:173-178,190-197,207-222,252-260 1no5 d1no5a_ A:28-33,46-53,58-73,77-84 1zqh d1zqha4 A:173-178,190-197,207-222,252-260 1zqw d1zqwa2 A:173-178,190-197,207-222,252-260 9ics d9icsa4 A:173-178,190-197,207-222,252-260 9icf d9icfa4 A:173-178,190-197,207-222,252-260 7ice d7icea4 A:173-178,190-197,207-222,252-260 8ich d8icha4 A:173-178,190-197,207-222,252-260 8icz d8icza4 A:173-178,190-197,207-222,252-260 1zqt d1zqta4 A:173-178,190-197,207-222,252-260 9ice d9icea4 A:173-178,190-197,207-222,252-260 8icb d8icba4 A:173-178,190-197,207-222,252-260 9icm d9icma4 A:173-178,190-197,207-222,252-260 9ici d9icia4 A:173-178,190-197,207-222,252-260 7ich d7icha4 A:173-178,190-197,207-222,252-260 9icj d9icja4 A:173-178,190-197,207-222,252-260 9icv d9icva4 A:173-178,190-197,207-222,252-260 8icl d8icla4 A:173-178,190-197,207-222,252-260 9icl d9icla4 A:173-178,190-197,207-222,252-260 1zqy d1zqya2 A:173-178,190-197,207-222,252-260 9icy d9icya4 A:173-178,190-197,207-222,252-260 1zqm d1zqma4 A:173-178,190-197,207-222,252-260 1zqs d1zqsa4 A:173-178,190-197,207-222,252-260 8icm d8icma4 A:173-178,190-197,207-222,252-260 9ica d9icaa4 A:173-178,190-197,207-222,252-260 7icj d7icja4 A:173-178,190-197,207-222,252-260 7ici d7icia4 A:173-178,190-197,207-222,252-260 1zqa d1zqaa4 A:173-178,190-197,207-222,252-260 7icm d7icma4 A:173-178,190-197,207-222,252-260 1huz d1huza4 A:173-178,190-197,207-222,252-260 9ico d9icoa4 A:173-178,190-197,207-222,252-260 1zqg d1zqga4 A:173-178,190-197,207-222,252-260 7icq d7icqa4 A:173-178,190-197,207-222,252-260 9ick d9icka4 A:173-178,190-197,207-222,252-260 7ick d7icka4 A:173-178,190-197,207-222,252-260 7ict d7icta4 A:173-178,190-197,207-222,252-260 9icu d9icua4 A:173-178,190-197,207-222,252-260 9icb d9icba4 A:173-178,190-197,207-222,252-260 1zqk d1zqka4 A:173-178,190-197,207-222,252-260 2bpg d2bpgb4 B:173-178,190-197,207-222,252-260 9icx d9icxa4 A:173-178,190-197,207-222,252-260 9icr d9icra4 A:173-178,190-197,207-222,252-260 1zql d1zqla4 A:173-178,190-197,207-222,252-260 1nom d1noma2 A:173-178,190-197,207-222,252-260 8icx d8icxa4 A:173-178,190-197,207-222,252-260 8icv d8icva4 A:173-178,190-197,207-222,252-260 1zqd d1zqda4 A:173-178,190-197,207-222,252-260 7icv d7icva4 A:173-178,190-197,207-222,252-260 1zqx d1zqxa2 A:173-178,190-197,207-222,252-260 8icj d8icja4 A:173-178,190-197,207-222,252-260 1bpe d1bpea3 A:172-178,190-198,207-222,252-260 8icr d8icra4 A:173-178,190-197,207-222,252-260 1zqn d1zqna4 A:173-178,190-197,207-222,252-260 8icq d8icqa4 A:173-178,190-197,207-222,252-260 8icf d8icfa4 A:173-178,190-197,207-222,252-260 8ici d8icia4 A:173-178,190-197,207-222,252-260 1zqi d1zqia4 A:173-178,190-197,207-222,252-260 9icw d9icwa4 A:173-178,190-197,207-222,252-260 8ica d8icaa4 A:173-178,190-197,207-222,252-260 1huz d1huzb4 B:173-178,190-197,207-222,252-260 9icn d9icna4 A:173-178,190-197,207-222,252-260 1zqp d1zqpa4 A:173-178,190-197,207-222,252-260 8ico d8icoa4 A:173-178,190-197,207-222,252-260 1bpb d1bpba2 A:173-178,190-197,207-222,252-260 8icu d8icua4 A:173-178,190-197,207-222,252-260 1vj7 d1vj7b2 B:236-241,265-272,274-290,319-328 3c5f d3c5fb3 B:410-415,427-434,440-455,486-495 8icw d8icwa4 A:173-178,190-197,207-222,252-260 8icg d8icga4 A:173-178,190-197,207-222,252-260 8icc d8icca4 A:173-178,190-197,207-222,252-260 1huo d1huob4 B:173-178,190-197,207-222,252-260 1tv9 d1tv9a3 A:173-178,190-197,207-222,252-260 9icc d9icca4 A:173-178,190-197,207-222,252-260 8ict d8icta4 A:173-178,190-197,207-222,252-260 1zqj d1zqja4 A:173-178,190-197,207-222,252-260 2dr9 d2dr9a2 A:41-45,59-67,71-88,106-116 8icp d8icpa4 A:173-178,190-197,207-222,252-260 1zqb d1zqba4 A:173-178,190-197,207-222,252-260 1huo d1huoa4 A:173-178,190-197,207-222,252-260 2i9g d2i9ga3 A:173-178,190-197,207-222,252-260 1tva d1tvaa3 A:173-178,190-197,207-222,252-260 1zqq d1zqqa4 A:173-178,190-197,207-222,252-260 1sz1 d1sz1b2 B:41-45,59-67,71-88,106-116 8icn d8icna4 A:173-178,190-197,207-222,252-260 1bpy d1bpya4 A:173-178,190-197,207-222,252-260 8ick d8icka4 A:173-178,190-197,207-222,252-260 1sz1 d1sz1a2 A:41-45,59-67,71-88,106-116 1tfw d1tfwb2 B:41-45,59-67,71-88,106-116 7ico d7icoa4 A:172-178,190-198,207-222,252-260 7icg d7icga4 A:172-178,190-198,207-222,252-260 1rzt d1rzte3 E:410-415,427-434,440-455,486-494 7icp d7icpa4 A:172-178,190-198,207-222,252-260 1tfy d1tfyd2 D:41-45,59-67,71-88,106-116 2zh6 d2zh6a2 A:41-45,59-67,71-87,106-116 9icg d9icga4 A:172-178,190-198,207-222,252-260 1rzt d1rzta3 A:410-415,427-434,440-455,486-494 2zhb d2zhba2 A:41-45,59-67,71-88,106-116 2dra d2draa2 A:41-45,59-67,71-87,106-116 7icr d7icra4 A:172-178,190-198,207-222,252-260 1tfy d1tfya2 A:41-45,59-67,71-87,106-116 1tfw d1tfwa2 A:41-45,59-66,71-87,106-115 1xsl d1xsla3 A:410-415,427-434,440-455,486-494 9icp d9icpa4 A:172-178,190-198,207-222,252-260 7icn d7icna4 A:172-178,190-198,207-222,252-260 1tfw d1tfwc2 C:41-45,59-67,71-87,106-116 2dr7 d2dr7a2 A:41-45,59-67,71-87,106-116 2dvi d2dvia2 A:41-45,59-67,71-87,106-116 8icy d8icya4 A:172-178,190-198,207-222,252-260 2dr8 d2dr8a2 A:41-45,59-67,71-87,106-116 1miy d1miyb2 B:21-26,41-46,48-57,75-83 3c5g d3c5gb3 B:410-415,427-434,440-455,486-494 1miy d1miya2 A:21-26,41-46,48-57,75-83 1xsl d1xslm3 M:410-415,427-434,440-455,486-494 2zh5 d2zh5a2 A:41-45,59-67,71-87,106-116 1r8a d1r8aa2 A:41-45,59-67,71-87,106-116 2drb d2drba2 A:41-45,59-67,71-87,106-116 1mq2 d1mq2a3 A:173-178,190-197,207-222,252-260 1no5 d1no5b_ B:27-33,46-53,58-72,77-84 2gws d2gwsm3 M:410-415,427-434,440-455,486-494 1tfy d1tfyc2 C:41-45,59-67,71-87,106-116 1bpz d1bpza4 A:172-178,190-198,207-222,252-260 1bpx d1bpxa4 A:172-178,190-198,207-222,252-260 1ylq d1ylqa1 A:15-21,34-41,46-62,65-72 2zh2 d2zh2a2 A:41-45,59-66,71-87,106-116 2zh3 d2zh3a2 A:41-45,59-67,71-87,106-116 2zh7 d2zh7a2 A:41-45,59-67,71-87,106-116 2zh4 d2zh4a2 A:41-45,59-67,71-87,106-116 1wot d1wota_ A:22-28,42-48,53-69,72-77 2zh1 d2zh1a2 A:41-45,59-67,71-87,106-116 2zh9 d2zh9a2 A:41-45,59-67,71-87,106-116 2zh8 d2zh8a2 A:41-45,59-67,71-87,106-116 2dr5 d2dr5a2 A:41-45,59-67,71-87,106-116 2gws d2gwse3 E:410-415,427-434,440-455,486-494 2bpg d2bpga4 A:172-178,190-198,207-222,252-260 1ylq d1ylqb1 B:15-21,34-41,46-62,65-72 1r89 d1r89a2 A:41-45,59-67,71-87,106-116 1miv d1miva2 A:21-26,42-46,48-57,75-83 3c5f d3c5fa3 A:410-415,427-434,440-455,486-494 1tfw d1tfwd2 D:41-45,59-67,71-87,106-116 1miv d1mivb2 B:21-26,42-46,48-57,75-83 1tfy d1tfyb2 B:41-45,59-67,71-87,106-116 2p66 d2p66a3 A:173-178,190-197,208-222,252-260 3c5g d3c5ga3 A:410-415,427-434,440-455,486-494 2iso d2isoa3 A:173-178,190-197,209-222,252-260 1r8b d1r8ba2 A:41-45,59-67,71-87,106-116 3c2k d3c2ka3 A:173-178,190-197,209-222,252-260 2fms d2fmsa3 A:173-178,190-197,209-222,252-260 1r8c d1r8ca2 A:41-45,59-67,71-87,106-116 2fmq d2fmqa3 A:173-178,190-197,209-222,252-260 2pxi d2pxia3 A:173-178,190-197,209-222,252-260 3c2m d3c2ma3 A:173-178,190-197,209-222,252-260 2fmp d2fmpa3 A:173-178,190-197,209-222,252-260 2isp d2ispa3 A:173-178,190-197,209-222,252-260 1zjm d1zjma3 A:173-178,190-197,209-222,252-260 2ewr d2ewra1 A:23-27,43-49,50-61,87-101 1f5a d1f5aa4 A:95-100,113-122,125-140,163-174 1q79 d1q79a2 A:95-100,113-122,125-140,163-174 1q78 d1q78a2 A:95-100,113-122,125-140,163-174 1miw d1miwb2 B:21-25,42-46,48-57,75-83 1mq3 d1mq3a3 A:173-178,190-197,209-222,252-260 1miw d1miwa2 A:21-25,42-46,48-57,75-83 3c2l d3c2la3 A:173-178,190-197,209-222,252-260 1jaj d1jaja_ A:33-38,49-57,58-67,94-106 2hhp d2hhpa2 A:82-87,100-109,112-128,150-161 3c66 d3c66b2 B:82-87,100-109,112-128,150-161 2o1p d2o1pb2 B:82-87,100-109,112-128,150-161 1fa0 d1fa0a4 A:82-87,100-109,112-128,150-161 2o1p d2o1pa2 A:82-87,100-109,112-128,150-161 3c66 d3c66a2 A:82-87,100-109,112-128,150-161 2q66 d2q66a2 A:82-87,100-109,112-128,150-161 1fa0 d1fa0b4 B:82-87,100-109,112-128,150-161 2pfn d2pfna3 A:410-415,427-434,442-455,486-494 1zjn d1zjna3 A:172-178,190-198,209-222,252-260 1jqr d1jqra_ A:33-37,49-56,61-69,94-105 2bcs d2bcsa3 A:410-415,427-434,442-455,486-494 1jms d1jmsa4 A:326-331,343-350,354-373,427-438 2bcr d2bcra3 A:410-415,427-434,442-455,486-494 1kdh d1kdha4 A:326-331,343-350,354-373,427-438 1xsp d1xspa3 A:410-415,427-434,442-455,486-494 2pfo d2pfoa3 A:410-415,427-434,442-455,486-494 2bcv d2bcva3 A:410-415,427-434,442-455,486-494 2bcu d2bcua3 A:410-415,427-434,442-455,486-494 1xsn d1xsna3 A:410-415,427-434,442-455,486-494 2pfp d2pfpa3 A:410-415,427-434,442-455,486-494 2bcq d2bcqa3 A:410-415,427-434,442-455,486-494 2pfq d2pfqa3 A:410-415,427-434,442-455,486-494 1rzt d1rzti3 I:410-415,427-434,443-455,486-494 2be3 d2be3a1 A:38-47,73-81,82-96,131-144 1rzt d1rztm3 M:410-415,427-434,443-455,486-494 1xsl d1xsli3 I:410-415,427-434,443-455,486-494 1kej d1keja4 A:326-331,343-350,354-373,427-438 1xsl d1xsle3 E:410-415,427-434,442-455,486-494 2gws d2gwsa3 A:410-415,427-434,443-455,486-494 2nrk d2nrka1 A:30-37,50-58,59-67,95-105 2be3 d2be3b1 B:39-47,73-80,82-96,131-144 1px5 d1px5b2 B:52-64,71-83,93-113,140-153 1px5 d1px5a2 A:52-63,72-83,93-112,140-153 18. c.59.1 MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 126345; strand 1 is antiparallel to the rest 1e8c d1e8cb2 B:341-346,351-357,360-376,457-464 1e8c d1e8ca2 A:341-346,351-357,360-375,457-464 1jbw d1jbwa1 A:300-306,309-314,317-333,405-411 2gcb d2gcba1 A:300-306,309-315,317-333,406-412 2gc6 d2gc6a1 A:300-306,309-314,317-333,406-412 1jbv d1jbva1 A:300-306,309-314,317-333,406-411 2gc5 d2gc5a1 A:300-306,309-316,317-333,406-412 1fgs d1fgsa1 A:300-306,309-314,317-333,406-411 2gca d2gcaa1 A:300-306,309-314,317-333,406-411 1j6u d1j6ua2 A:300-309,310-318,321-337,419-427 1o5z d1o5za1 A:295-302,303-310,313-329,402-408 1p3d d1p3da2 A:326-336,337-346,349-365,450-458 1p31 d1p31a2 A:326-336,337-346,349-365,449-458 1p31 d1p31b2 B:326-336,337-346,349-365,449-458 1p3d d1p3db2 B:326-336,337-346,349-365,449-458 1gqq d1gqqb2 B:326-336,337-346,349-365,449-458 1gg4 d1gg4b1 B:815-823,825-832,836-850,926-933 1gqy d1gqya2 A:326-336,337-346,349-365,449-458 1gqy d1gqyb2 B:326-336,337-346,349-365,451-458 1gg4 d1gg4a1 A:315-322,325-332,336-350,426-433 1gqq d1gqqa2 A:326-336,337-346,349-365,450-458 2jfg d2jfga2 A:301-310,311-318,322-333,404-410 3uag d3uaga2 A:303-310,311-318,322-333,403-410 4uag d4uaga2 A:301-310,311-318,322-333,403-410 1uag d1uaga2 A:301-310,311-318,322-333,403-410 2jfh d2jfha2 A:301-310,311-318,322-333,404-410 2uuo d2uuoa2 A:303-310,311-318,322-333,404-410 2jff d2jffa2 A:301-310,311-318,322-333,404-410 2uup d2uupa2 A:301-310,311-318,322-333,404-410 1e0d d1e0da2 A:301-310,311-318,322-333,404-410 2uag d2uaga2 A:301-310,311-318,322-331,404-410 1eeh d1eeha2 A:303-310,311-317,322-333,403-410 19. d.109.2 C-terminal, gelsolin-like domain of Sec23/24 Gelsolin-like 3 layers: a/b/a; contains mixed beta-sheet 1m2v d1m2va4 A:652-658,660-667,684-705,709-716 2qtv d2qtva4 A:652-658,660-667,684-705,709-716 1pd1 d1pd1a4 A:796-804,806-814,846-862,869-876 1pd0 d1pd0a4 A:796-804,806-814,846-862,869-876 1m2o d1m2oa4 A:652-658,660-667,681-705,709-716 1m2o d1m2oc4 C:652-658,660-667,681-705,709-716 1m2v d1m2vb4 B:796-804,806-814,848-862,869-875 1pcx d1pcxa4 A:798-804,806-815,817-826,869-878 1pcx d1pcxa4 A:798-804,806-815,846-862,869-878 1pd1 d1pd1a4 A:796-804,806-814,817-826,869-876 1pd0 d1pd0a4 A:796-804,806-814,817-826,869-876 20. d.108.1 Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 3 layers: a/b/a; contains mixed beta-sheet 1xmt d1xmta_ A:24-32,35-44,52-69,70-76 2q44 d2q44a1 A:24-32,35-44,52-69,70-76 1ozp d1ozpa_ A:60-70,75-83,90-104,106-113 1p0h d1p0ha_ A:60-70,75-83,90-104,106-113 2fia d2fiab1 B:60-69,74-84,91-108,110-118 1xeb d1xebh_ H:58-70,74-84,91-109,112-119 2i00 d2i00a2 A:223-235,236-246,247-265,266-274 2g3a d2g3aa1 A:46-58,59-68,76-93,95-102 2i00 d2i00d2 D:223-235,236-246,247-265,266-274 2i00 d2i00e2 E:223-235,236-246,247-265,266-274 1yvo d1yvoa1 A:63-74,82-91,98-115,117-125 2hqy d2hqya2 A:50-59,60-69,72-88,91-97 2arh d2arha1 A:44-57,59-70,80-94,95-101 2i00 d2i00c2 C:223-235,236-246,247-265,266-274 2arh d2arhc1 C:44-57,59-70,80-94,95-101 2i00 d2i00f2 F:223-235,236-246,247-265,266-274 1zo0 d1zo0a1 A:127-136,137-143,152-168,170-178 2arh d2arhb1 B:44-57,59-70,80-94,95-101 1yvo d1yvob1 B:63-74,82-91,98-115,117-125 1ghe d1ghea_ A:71-82,89-99,106-123,125-133 2evn d2evna1 A:23-32,35-45,51-69,70-76 2i00 d2i00b2 B:223-235,236-246,247-265,266-274 2fia d2fiaa1 A:59-69,74-84,91-108,110-118 1ghe d1gheb_ B:71-82,89-99,106-123,125-133 1j4j d1j4ja_ A:82-93,100-110,117-134,136-144 1l0c d1l0ca_ A:88-100,117-127,134-151,154-161 1ib1 d1ib1f_ F:88-100,117-127,134-151,154-161 1ib1 d1ib1h_ H:88-100,117-127,134-151,154-161 1xeb d1xebf_ F:58-70,74-84,92-109,112-119 1kuv d1kuva_ A:88-100,117-127,134-151,154-161 1ib1 d1ib1g_ G:88-100,117-127,134-151,154-161 1ib1 d1ib1e_ E:88-100,117-127,134-151,154-161 1cjw d1cjwa_ A:88-100,117-127,134-151,154-161 1y9k d1y9kb1 B:44-55,58-68,75-92,94-102 1y9k d1y9kd1 D:44-55,58-68,75-92,94-102 1y9w d1y9wb1 B:49-61,62-72,79-96,98-106 1y9w d1y9wa1 A:49-61,62-72,79-96,98-106 1qso d1qsob_ B:68-79,86-96,103-120,123-130 2hv2 d2hv2d2 D:208-220,221-231,232-250,251-259 2hv2 d2hv2b2 B:208-220,221-231,232-250,251-259 2hv2 d2hv2e2 E:208-220,221-231,232-250,251-259 2gan d2ganb1 B:76-86,105-115,122-139,140-147 1m1d d1m1da_ A:104-117,118-129,136-153,155-163 1qsm d1qsmc_ C:67-79,86-96,103-120,123-130 1qsm d1qsmd_ D:67-79,86-96,103-120,123-130 2hv2 d2hv2c2 C:208-220,221-231,232-250,251-259 2hv2 d2hv2f2 F:208-220,221-231,232-250,251-259 1kuy d1kuya_ A:88-100,117-127,134-151,154-161 1b6b d1b6ba_ A:88-100,117-127,134-151,154-161 1qso d1qsoc_ C:68-79,86-96,103-120,123-130 5gcn d5gcna_ A:60-72,75-85,92-109,111-118 2hv2 d2hv2a2 A:208-220,221-231,232-250,251-259 1kux d1kuxa_ A:88-100,117-127,134-151,154-161 1q2y d1q2ya_ A:51-63,64-73,81-98,100-108 1xeb d1xeba_ A:58-68,75-84,91-109,112-119 1xeb d1xebc_ C:58-68,75-84,91-109,112-119 1ygh d1yghb_ B:155-167,170-180,185-204,207-214 1ygh d1ygha_ A:155-167,170-180,185-204,207-214 1vhs d1vhsa_ A:60-71,79-88,95-112,114-122 1xeb d1xebd_ D:58-68,75-84,91-109,112-119 2gan d2gana1 A:76-86,105-115,122-139,140-147 1wwz d1wwza1 A:64-79,82-94,101-118,119-127 1sqh d1sqha_ A:79-88,90-98,103-113,120-128 1b6b d1b6bb_ B:88-100,117-127,134-151,154-161 1xeb d1xebb_ B:58-68,75-84,90-109,112-119 1y7r d1y7rb1 B:48-59,62-72,78-96,100-108 1lrz d1lrza3 A:310-322,323-333,340-357,359-366 1xeb d1xebg_ G:58-68,75-84,91-109,112-119 1vhs d1vhsb_ B:60-71,79-88,95-112,114-122 1wwz d1wwzb1 B:64-79,82-94,101-118,119-127 1nsl d1nslb_ B:76-89,92-101,108-126,128-136 2b3u d2b3ua1 A:70-82,86-97,104-121,123-131 1xeb d1xebe_ E:58-68,75-84,89-109,112-119 1nsl d1nsla_ A:76-89,92-101,108-126,128-136 2ge3 d2ge3b1 B:67-78,85-94,101-118,120-128 2b4d d2b4da1 A:70-82,86-97,104-121,123-131 1nsl d1nsld_ D:76-89,92-101,108-126,128-136 1nsl d1nslc_ C:76-89,92-101,108-126,128-136 1bo4 d1bo4b_ B:85-98,103-114,121-138,141-146 1bo4 d1bo4a_ A:85-98,103-114,121-138,141-146 2c27 d2c27a1 A:59-72,73-83,90-104,107-113 2b4b d2b4bb1 B:70-82,86-97,104-121,123-131 1r57 d1r57a_ A:21-31,34-44,51-68,69-75 1m1d d1m1dc_ C:404-417,418-429,436-453,455-462 1nsl d1nslf_ F:76-90,91-101,108-126,128-136 1yvk d1yvkb1 B:48-59,62-72,79-96,98-106 1yvk d1yvka1 A:48-59,62-72,79-96,98-106 1yvk d1yvkd1 D:48-59,62-72,79-96,98-106 1yvk d1yvkc1 C:48-59,62-72,79-96,98-106 1ne9 d1ne9a2 A:237-249,250-260,266-283,285-292 1xe4 d1xe4a2 A:237-249,250-260,266-283,285-292 1xix d1xixa2 A:237-249,250-260,266-283,285-292 1p4n d1p4na2 A:237-249,250-260,266-283,285-292 2aj6 d2aj6a1 A:62-75,76-87,94-111,112-116 1xf8 d1xf8a2 A:237-249,250-260,266-283,285-292 2a4n d2a4nb1 B:54-66,69-79,86-103,105-114 2eui d2euid1 D:59-73,74-87,94-111,113-121 1yre d1yreb1 B:77-91,92-103,110-128,130-138 1y9k d1y9ka1 A:44-55,58-68,75-92,94-102 2fl4 d2fl4a1 A:54-66,68-78,85-103,105-112 1z4r d1z4ra1 A:557-569,572-582,589-606,608-615 1y7r d1y7ra1 A:48-59,62-72,78-96,100-107 2ge3 d2ge3a1 A:67-78,85-94,101-118,120-128 1pua d1puaa_ A:104-117,118-129,136-153,155-162 1n71 d1n71c_ C:54-66,69-79,86-103,105-114 1on0 d1on0d_ D:71-80,87-97,104-121,123-127 1n71 d1n71a_ A:54-66,69-79,86-103,105-114 1vkc d1vkcb_ B:63-78,79-92,99-116,117-122 1n71 d1n71d_ D:54-66,69-79,86-103,105-114 1qsr d1qsra_ A:104-117,118-129,136-153,155-161 1q2d d1q2da_ A:104-117,118-129,136-153,155-162 1qso d1qsod_ D:66-79,86-96,103-120,123-130 1qsn d1qsna_ A:104-117,118-129,136-153,155-162 1mk4 d1mk4b_ B:50-61,66-76,80-100,102-109 1qst d1qsta_ A:104-117,118-129,136-153,155-161 2a4n d2a4na1 A:54-66,69-79,86-103,105-114 1qsm d1qsma_ A:66-79,86-96,103-120,123-130 1yre d1yrec1 C:77-91,92-103,110-128,130-138 1mk4 d1mk4a_ A:50-61,66-76,80-100,102-109 2ge3 d2ge3c1 C:67-78,85-94,101-118,120-128 1n71 d1n71b_ B:54-65,69-79,86-103,105-114 1q2c d1q2ca_ A:104-117,118-129,136-153,155-162 1b87 d1b87a_ A:54-66,69-79,86-103,105-114 1yre d1yred1 D:77-91,92-103,110-128,130-138 1pu9 d1pu9a_ A:104-117,118-129,136-153,155-161 2q4v d2q4vb1 B:70-82,86-97,104-121,123-131 2bei d2beib1 B:70-82,86-97,104-121,123-131 2ge3 d2ge3d1 D:67-78,85-94,101-118,120-128 1cm0 d1cm0a_ A:552-564,567-577,584-601,603-610 1qso d1qsoa_ A:66-79,86-96,103-120,123-130 1yre d1yrea1 A:77-91,92-103,110-128,130-138 2d4p d2d4pa1 A:44-58,59-71,72-91,93-97 1vkc d1vkca_ A:63-78,79-92,99-116,117-122 1j4j d1j4jb_ B:82-93,100-110,117-134,136-144 1cm0 d1cm0b_ B:552-564,567-577,584-601,603-610 2hqy d2hqyb1 B:215-227,229-239,244-258,262-269 1qsm d1qsmb_ B:66-79,86-96,103-120,123-130 2fck d2fcka1 A:77-92,93-103,110-128,130-137 1y9k d1y9kc1 C:44-55,58-68,74-92,94-102 2bei d2beia1 A:69-82,86-97,104-121,124-131 1yr0 d1yr0d1 D:64-75,83-92,99-116,118-126 1on0 d1on0c_ C:71-80,87-97,104-121,123-127 2fsr d2fsra1 A:75-84,91-98,105-123,126-132 1nsl d1nsle_ E:76-90,91-101,108-126,128-136 2d4o d2d4oa1 A:44-58,59-71,72-91,93-97 2hqy d2hqya1 A:215-227,229-239,244-258,262-269 1wk4 d1wk4b_ B:68-79,88-97,104-121,123-131 1yr0 d1yr0a1 A:64-75,83-92,99-116,118-126 1rxt d1rxtb2 B:323-335,345-355,376-392,394-399 2b4d d2b4db1 B:70-83,85-97,104-121,122-131 2fe7 d2fe7a1 A:60-74,77-89,96-113,114-123 2fxf d2fxfb1 B:70-83,85-97,104-121,124-130 1rxt d1rxtc2 C:323-335,345-355,376-392,394-399 1ufh d1ufha_ A:71-80,87-97,104-121,123-127 2atr d2atra1 A:51-62,65-75,82-96,99-103 2b3u d2b3ub1 B:70-83,85-97,104-121,124-131 2vbq d2vbqb1 B:52-64,74-84,91-108,110-117 2b4b d2b4ba1 A:70-83,85-97,104-121,122-131 2b5g d2b5ga1 A:70-83,85-97,104-121,122-131 2jdc d2jdca1 A:48-59,68-78,85-102,104-112 2fe7 d2fe7b1 B:61-74,77-89,96-113,114-123 1ro5 d1ro5a_ A:60G-74,98-108,116-136,138-145 2fxf d2fxfa1 A:70-83,85-97,104-121,124-131 1s3z d1s3zb_ B:52-64,74-84,91-108,110-117 2eui d2euie1 E:59-73,74-87,91-111,113-121 1rxt d1rxtd1 D:147-159,160-173,181-198,201-207 2bsw d2bswa1 A:48-59,68-78,85-102,104-112 2ozg d2ozga2 A:56-72,73-87,94-111,113-118 2jdd d2jdda1 A:48-59,68-78,85-102,104-112 1yle d1ylea1 A:68-80,118-129,135-153,158-166 2vbq d2vbqa1 A:52-64,74-84,91-108,110-117 1s5k d1s5ka_ A:52-64,74-84,91-108,110-117 1yx0 d1yx0a1 A:55-67,69-75,86-103,105-109 1s5k d1s5kb_ B:52-64,74-84,91-108,110-117 2bl1 d2bl1a1 A:62-74,82-91,98-115,117-125 2cy2 d2cy2a1 A:68-79,88-97,104-121,123-131 2c27 d2c27a1 A:214-226,231-241,248-265,277-285 2ozg d2ozga2 A:209-223,224-236,237-255,256-262 1s3z d1s3za_ A:52-64,74-84,91-108,110-117 1yr0 d1yr0c1 C:64-75,83-92,99-116,118-126 1wk4 d1wk4a_ A:68-79,88-97,104-121,123-131 2eui d2euia1 A:59-73,74-87,91-111,113-120 2q4v d2q4va1 A:69-82,86-97,103-121,124-131 1iid d1iida1 A:143-159,160-174,181-198,201-207 1s7f d1s7fa1 A:76-90,91-101,108-125,128-136 1sqh d1sqha_ A:219-230,232-240,247-265,267-274 1yr0 d1yr0b1 B:64-74,83-92,99-116,118-126 2g3t d2g3tb1 B:70-83,85-97,104-121,122-127 1rxt d1rxtd2 D:323-336,345-355,376-392,394-399 1ozp d1ozpa_ A:215-225,231-241,248-265,277-285 2ae6 d2ae6c1 C:59-69,78-87,94-111,113-121 2h5m d2h5ma1 A:21-31,34-39,49-68,69-74 2ae6 d2ae6a1 A:59-69,78-87,94-111,113-121 2hqy d2hqyb2 B:50-59,60-66,72-88,91-97 2f5i d2f5ia1 A:70-83,85-97,104-121,124-131 2ae6 d2ae6d1 D:59-69,78-87,94-111,113-121 2ae6 d2ae6b1 B:59-69,78-87,94-111,113-121 1p0h d1p0ha_ A:215-225,231-241,248-265,277-285 2eui d2euib1 B:59-72,75-87,91-111,113-121 2jev d2jeva1 A:70-83,85-97,104-121,124-131 2g3t d2g3ta1 A:70-83,85-97,104-121,122-127 1on0 d1on0a_ A:71-81,87-96,104-121,123-127 1z4e d1z4eb1 B:64-79,81-94,101-118,120-128 2jev d2jevb1 B:70-83,85-97,104-121,124-131 2b5g d2b5gb1 B:70-83,85-97,102-121,124-131 1rxt d1rxtc1 C:147-159,160-173,181-198,201-207 2f5i d2f5ib1 B:70-83,85-97,104-121,122-131 1tiq d1tiqa_ A:68-78,89-99,106-123,125-133 1yk3 d1yk3b1 B:100-111,125-134,142-160,162-171 1iic d1iicb1 B:142-159,160-174,181-198,201-207 1iic d1iica1 A:142-159,160-174,181-198,201-207 1i21 d1i21x_ X:74-87,91-103,110-127,130-136 1yk3 d1yk3e1 E:100-111,126-134,142-160,163-171 1u6m d1u6mc_ C:66-77,112-121,128-145,147-155 2hv2 d2hv2a2 A:53-69,70-84,91-108,110-115 1kzf d1kzfa_ A:61-72,95-104,117-134,136-143 1yk3 d1yk3d1 D:100-111,126-134,142-160,163-171 2hv2 d2hv2b2 B:53-69,70-84,91-108,110-115 1s7l d1s7la1 A:76-90,91-101,108-125,128-136 1yk3 d1yk3f1 F:100-111,126-134,142-160,163-171 1k4j d1k4ja_ A:61-72,95-104,117-134,136-143 1yk3 d1yk3c1 C:100-111,126-134,142-160,163-171 1z4e d1z4ea1 A:64-79,81-94,101-118,120-128 1wk4 d1wk4c_ C:68-79,88-97,104-121,123-131 2hv2 d2hv2d2 D:53-69,70-84,91-108,110-115 2hv2 d2hv2e2 E:53-69,70-84,91-108,110-115 1yk3 d1yk3a1 A:100-111,126-134,142-160,163-171 2i00 d2i00b2 B:70-85,87-100,107-124,126-131 2cxa d2cxaa1 A:138-150,151-161,164-181,183-188 1u6m d1u6ma_ A:66-77,112-121,128-145,147-155 1z9u d1z9ub1 B:76-90,91-101,108-125,128-136 2hv2 d2hv2c2 C:53-69,70-84,91-108,110-115 1z9u d1z9ua1 A:76-90,91-101,108-125,128-136 1s7n d1s7nd1 D:76-90,91-101,108-125,128-136 1m4i d1m4ia_ A:56-72,73-87,94-111,112-118 2nmt d2nmta1 A:142-159,161-174,181-198,201-207 2i00 d2i00a2 A:70-85,87-100,107-124,126-131 1s7n d1s7nb1 B:76-90,91-101,108-125,128-136 1yk3 d1yk3g1 G:100-111,126-134,142-160,163-171 2hv2 d2hv2f2 F:53-69,70-84,91-108,110-115 1s7n d1s7nc1 C:76-90,91-101,108-125,128-136 1s7n d1s7na1 A:76-90,91-101,108-125,128-136 1m4g d1m4ga_ A:56-72,73-87,94-111,112-118 1yk3 d1yk3h1 H:100-111,126-134,142-160,163-171 1i21 d1i21m_ M:72-87,91-103,110-127,129-136 1m4d d1m4da_ A:56-72,73-87,94-111,112-118 2i00 d2i00f2 F:70-85,87-100,107-124,126-131 1s7k d1s7ka1 A:76-90,91-101,108-125,128-136 1tiq d1tiqb_ B:68-78,89-99,106-123,125-133 2i00 d2i00c2 C:70-85,87-100,107-124,126-131 1u6m d1u6md_ D:66-77,111-121,128-145,147-155 1m4i d1m4ib_ B:56-72,73-87,94-111,112-118 2i00 d2i00e2 E:70-85,87-100,107-124,126-131 1m4g d1m4gb_ B:56-72,73-87,94-111,112-118 1i1d d1i1db_ B:72-87,91-103,110-127,129-136 1u6m d1u6mb_ B:66-77,111-121,128-145,147-155 1i21 d1i21n_ N:72-87,91-103,110-127,130-136 1m4d d1m4db_ B:56-72,73-87,94-111,112-118 1m44 d1m44a_ A:56-72,73-87,94-111,112-118 1i21 d1i21y_ Y:72-87,91-103,110-127,130-136 1i21 d1i21a_ A:72-87,91-103,110-127,130-136 1i12 d1i12c_ C:72-87,91-103,110-127,129-136 1ufh d1ufhb_ B:70-80,87-97,104-121,123-127 1bob d1boba_ A:184-197,212-223,230-247,248-255 1m44 d1m44b_ B:56-72,73-87,94-111,112-118 2i00 d2i00d2 D:70-85,87-100,107-124,126-131 1i21 d1i21b_ B:72-87,91-103,110-127,130-136 1i12 d1i12b_ B:72-87,91-103,110-127,129-136 1i12 d1i12d_ D:72-87,91-103,110-127,129-136 2fiw d2fiwa1 A:68-78,80-88,95-112,114-121 1i1d d1i1dd_ D:72-87,91-103,110-127,129-136 1lrz d1lrza2 A:50-64,66-73,82-101,101-108 1rxt d1rxta2 A:323-337,344-355,376-392,394-399 1on0 d1on0b_ B:71-80,87-96,104-121,123-127 1i12 d1i12a_ A:72-87,91-103,110-127,130-136 1iyl d1iylb1 B:147-164,165-180,187-204,207-212 1rxt d1rxtb1 B:144-159,160-174,179-198,201-207 2i6c d2i6ca1 A:1059-1071,1073-1084,1091-1109,1108-1119 1nmt d1nmtb1 B:146-164,165-180,187-204,207-213 1nmt d1nmtc1 C:146-164,165-180,187-204,207-213 1rxt d1rxta1 A:144-159,160-174,179-198,201-207 1nmt d1nmta1 A:146-164,165-180,187-204,207-213 1iyk d1iykb1 B:146-164,165-180,187-204,207-213 1i1d d1i1dc_ C:72-88,90-103,110-127,129-136 1iyk d1iyka1 A:146-164,165-180,187-204,207-213 1iyl d1iyla1 A:146-164,165-180,187-204,207-212 1iyl d1iylc1 C:146-164,165-180,187-204,207-213 1i1d d1i1da_ A:72-88,90-103,110-127,129-136 1iyl d1iyld1 D:146-164,165-180,187-204,207-213 1iyl d1iyla2 A:326-342,348-361,367-387,389-396 1iyl d1iylb2 B:326-342,348-361,367-387,389-396 1ne9 d1ne9a1 A:51-64,68-74,83-99,103-108 1xf8 d1xf8a1 A:51-64,68-74,83-99,103-108 1p4n d1p4na1 A:51-64,68-74,83-99,103-108 1xe4 d1xe4a1 A:51-64,68-74,83-99,103-108 1xix d1xixa1 A:51-64,68-74,83-99,103-108 1iyl d1iyld2 D:327-341,348-361,367-387,389-396 1iyk d1iyka2 A:326-342,348-361,365-387,389-395 1nmt d1nmta2 A:326-342,348-361,365-387,389-396 1nmt d1nmtc2 C:326-342,348-361,365-387,389-396 1nmt d1nmtb2 B:326-342,348-361,365-387,389-396 1iyk d1iykb2 B:326-342,348-361,365-387,389-395 1iyl d1iylc2 C:326-342,348-361,365-387,389-396 1iic d1iicb2 B:321-337,343-356,366-392,394-400 1iid d1iida2 A:321-338,343-356,366-392,394-400 1iic d1iica2 A:321-337,343-356,366-392,394-400 2nmt d2nmta2 A:321-337,343-356,366-392,394-400 21. c.122.1 L-sulfolactate dehydrogenase-like topological similarity to the domain 2 of TM1585 ! L-sulfolactate dehydrogenase-like core: 3 layers, a/b/a; mixed sheet of 7 strands, order 1237456; strands 1, 6 and 7 are antiparallel to the rest 1xrh d1xrhc_ C:68-75,77-84,87-107,107-117 1s20 d1s20a_ A:67-74,75-81,85-105,105-113 1xrh d1xrhf_ F:68-75,77-84,87-107,107-115 1xrh d1xrhe_ E:68-75,77-84,87-107,107-115 1xrh d1xrhd_ D:68-75,77-84,87-107,107-115 1xrh d1xrhg_ G:68-75,77-84,87-107,107-115 1xrh d1xrhh_ H:68-75,77-84,87-107,107-115 1xrh d1xrha_ A:68-75,77-84,87-107,107-115 1xrh d1xrhb_ B:68-75,77-84,87-107,107-115 1s20 d1s20h_ H:66-74,75-82,85-105,105-113 1s20 d1s20b_ B:66-74,75-82,85-105,105-113 1s20 d1s20f_ F:66-74,75-82,85-105,105-113 1s20 d1s20g_ G:66-74,75-82,85-105,105-113 1s20 d1s20e_ E:66-74,75-82,85-105,105-113 1s20 d1s20d_ D:66-74,75-82,85-105,105-113 1nxu d1nxua_ A:66-74,75-82,85-105,105-113 1s20 d1s20c_ C:66-74,75-82,85-105,105-113 1nxu d1nxub_ B:66-74,75-82,85-105,105-113 22. c.102.1 Cell-division inhibitor MinC, N-terminal domain Cell-division inhibitor MinC, N-terminal domain beta(2)-(alpha-beta)2-beta; 2 layers, a/b; mixed beta-sheet of 5 strands, order 12345; strands 1 & 5 are antiparallel to the rest 1hf2 d1hf2a2 A:1-7,10-17,20-36,43-51 1hf2 d1hf2c2 C:1-7,10-17,20-36,43-51 1hf2 d1hf2b2 B:2-7,10-17,20-36,43-51 1hf2 d1hf2d2 D:3-7,10-17,20-36,44-51 23. c.13.2 SpoIIaa-like SpoIIaa-like core: 4 turns of a (beta-alpha)n superhelix 1h4x d1h4xb_ B:2-8,11-18,22-40,43-51 1h4z d1h4za_ A:2-8,11-18,22-40,43-51 1thn d1thnb_ B:2-11,12-19,23-42,44-52 1h4y d1h4ya_ A:2-8,11-18,22-41,43-49 1th8 d1th8b_ B:2-11,12-19,23-42,44-52 1thn d1thnd_ D:2-11,12-19,23-42,44-52 1sbo d1sboa_ A:4-12,13-24,24-42,45-53 1til d1tilf_ F:2-11,12-23,23-42,44-52 1til d1tilb_ B:2-11,12-19,23-42,44-50 1tid d1tidb_ B:2-11,12-19,23-42,44-50 1h4x d1h4xa_ A:2-8,11-18,22-40,43-49 1tid d1tidd_ D:2-11,12-19,23-42,44-50 1h4y d1h4yb_ B:2-8,11-18,22-41,43-49 1til d1tild_ D:2-11,12-23,23-42,44-50 1buz d1buza_ A:2-10,11-19,22-39,43-51 1auz d1auza_ A:2-10,11-19,22-39,43-51 1vc1 d1vc1a_ A:4-12,13-21,24-42,45-52 2q3l d2q3lb1 B:5-16,17-28,30-48,53-59 1vc1 d1vc1b_ B:4-12,13-21,24-42,45-51 1t6r d1t6ra1 A:4-10,14-24,24-43,45-53 2q3l d2q3la1 A:6-16,17-28,30-46,53-61 2ook d2ookb1 B:5-16,17-27,30-49,53-60 2ook d2ooka1 A:5-16,17-27,30-48,53-59 1t6r d1t6ra1 A:4-10,14-24,24-43,53-58 1til d1tilf_ F:2-11,12-23,23-42,52-57 1sbo d1sboa_ A:4-12,13-24,24-42,53-58 2q3l d2q3la1 A:6-16,17-28,30-46,61-66 1thn d1thnb_ B:2-11,19-23,23-42,52-57 1th8 d1th8b_ B:2-11,19-23,23-42,52-57 1thn d1thnd_ D:2-11,19-23,23-42,52-57 2q3l d2q3lb1 B:5-16,17-28,30-48,62-66 24. c.135.1 NIF3 (NGG1p interacting factor 3)-like di-iron binding protein ! NIF3 (NGG1p interacting factor 3)-like consist of two intertwined domains; duplication: contains two structural repeats of alpha-beta-(beta-alpha)3 motif with mixed beta-sheet, order: 1432, strand 1 is antiparallel to the rest 1nmo d1nmof_ F:127-133,166-174,174-186,188-194 2fyw d2fywb1 B:132-140,176-183,184-196,198-203 2fyw d2fywc1 C:132-140,176-184,185-196,198-204 2fyw d2fywa1 A:132-140,176-183,185-196,198-203 1nmo d1nmod_ D:127-134,166-174,174-186,188-194 1nmo d1nmob_ B:127-134,166-174,174-186,188-194 1nmp d1nmpf_ F:127-134,166-174,174-186,188-194 1nmo d1nmoa_ A:127-134,166-174,175-186,188-194 1nmo d1nmoe_ E:127-134,166-174,174-186,188-194 1nmp d1nmpe_ E:127-134,166-174,175-186,188-194 1nmp d1nmpa_ A:127-134,166-174,175-186,188-194 1nmp d1nmpb_ B:127-134,166-174,175-186,188-194 1nmp d1nmpd_ D:127-134,166-174,175-186,188-194 1nmo d1nmoc_ C:127-134,166-174,175-186,188-194 1nmp d1nmpc_ C:127-134,166-174,175-186,188-194 2gx8 d2gx8a1 A:238-251,284-292,293-304,306-312 2gx8 d2gx8c1 C:238-251,284-292,293-304,306-312 2gx8 d2gx8b1 B:238-251,284-292,293-304,306-312 26. d.133.1 Molybdenum cofactor-binding domain duplication: consists of 4 structural repeats arranged in 2 lobes ! contains one left-hand beta-alpha-beta unit per lobe ! Molybdenum cofactor-binding domain beta(2)-alpha-beta-alpha-beta; 2 layers: a/b; mixed sheet: order 1243: crossing loops 1jrp d1jrpf2 F:179-187,188-195,198-211,216-222 1jro d1jrof2 F:179-187,188-195,198-211,216-222 1jrp d1jrpd2 D:179-187,188-195,198-211,216-222 1jrp d1jrpb2 B:179-187,188-195,198-211,216-222 1jro d1jrod2 D:179-187,188-195,198-211,216-222 1jro d1jrob2 B:179-187,188-195,198-211,216-222 1jrp d1jrph2 H:179-187,188-195,198-211,216-222 1jro d1jroh2 H:179-187,188-195,198-211,216-222 1sb3 d1sb3d2 D:459-467,471-477,484-498,503-509 1rm6 d1rm6d2 D:459-467,471-477,484-498,503-509 1sb3 d1sb3a2 A:459-467,471-477,484-498,503-509 1rm6 d1rm6a2 A:459-467,471-477,484-498,503-509 1fiq d1fiqc2 C:747-755,758-765,768-781,786-792 1v97 d1v97b5 B:747-756,757-765,768-781,786-792 1v97 d1v97a5 A:747-756,757-765,768-781,786-792 1n62 d1n62e2 E:220-229,230-238,241-254,259-264 1fo4 d1fo4b5 B:747-756,757-765,768-781,786-792 1fo4 d1fo4a5 A:747-756,757-765,768-781,786-792 1vdv d1vdva5 A:747-756,757-765,768-781,786-792 1vdv d1vdvb5 B:747-756,757-765,768-781,786-792 1n62 d1n62b2 B:220-229,230-238,241-254,259-264 1t3q d1t3qb2 B:204-213,214-222,225-238,243-248 1t3q d1t3qe2 E:204-213,214-222,225-238,243-248 1n60 d1n60e2 E:220-229,230-238,241-254,259-264 1n5x d1n5xa5 A:747-756,757-765,768-781,786-792 1n5x d1n5xb5 B:747-756,757-765,768-781,786-792 1t3q d1t3qb2 B:484-493,495-501,509-523,528-533 1n60 d1n60b2 B:220-229,230-238,241-254,259-264 1n62 d1n62e2 E:506-515,517-524,531-545,550-555 1n60 d1n60e2 E:506-515,517-524,531-545,550-555 1t3q d1t3qe2 E:484-493,495-501,509-523,528-533 1n63 d1n63b2 B:220-229,230-238,241-254,259-264 1n61 d1n61e2 E:220-229,230-238,241-254,259-264 1zxi d1zxib2 B:220-229,230-238,241-254,259-264 1n61 d1n61b2 B:220-229,230-238,241-254,259-264 1n63 d1n63e2 E:220-229,230-238,241-254,259-264 1n5w d1n5we2 E:220-229,230-238,241-254,259-264 1ffu d1ffub2 B:217-226,227-235,238-251,256-261 1n62 d1n62b2 B:506-515,517-524,531-545,550-555 3b9j d3b9jc2 C:747-754,759-765,768-781,786-792 1n5w d1n5wb2 B:220-229,230-238,241-254,259-264 1n63 d1n63e2 E:506-515,517-524,531-545,550-555 1n60 d1n60b2 B:506-515,517-524,531-545,550-555 1n61 d1n61e2 E:506-515,517-524,531-545,550-555 1n5w d1n5we2 E:506-515,517-524,531-545,550-555 1rm6 d1rm6a2 A:194-203,204-212,215-228,233-238 1ffv d1ffvb2 B:217-226,227-235,238-251,256-261 1n61 d1n61b2 B:506-515,517-524,531-545,550-555 1zxi d1zxib2 B:506-515,517-524,531-545,550-555 1rm6 d1rm6d2 D:194-203,204-212,215-228,233-238 1n63 d1n63b2 B:506-515,517-524,531-545,550-555 1sb3 d1sb3d2 D:194-203,204-212,215-228,233-238 1sb3 d1sb3a2 A:194-203,204-212,215-228,233-238 1ffv d1ffve2 E:500-509,511-518,525-539,544-549 1n5w d1n5wb2 B:506-515,517-524,531-545,550-555 1ffu d1ffue2 E:500-509,511-518,525-539,544-549 1jrp d1jrpd2 D:465-475,477-484,491-505,510-514 1ffu d1ffub2 B:500-509,511-518,525-539,544-549 1ffv d1ffve2 E:217-226,227-235,238-251,256-261 1ffu d1ffue2 E:217-226,227-235,238-251,256-261 1ffv d1ffvb2 B:500-509,511-518,525-539,544-549 1jrp d1jrpf2 F:465-475,477-484,491-505,510-514 1jrp d1jrph2 H:465-475,477-484,491-505,510-514 1jrp d1jrpb2 B:465-475,477-484,491-505,510-514 1vlb d1vlba4 A:629-640,642-648,656-673,678-682 1jro d1jroh2 H:465-475,477-484,491-505,510-514 1jro d1jrob2 B:465-475,477-484,491-505,510-514 1jro d1jrod2 D:465-475,477-484,491-505,510-514 1jro d1jrof2 F:465-475,477-484,491-505,510-514 1dgj d1dgja4 A:372-380,382-388,392-405,411-416 1vlb d1vlba4 A:370-379,381-387,391-404,409-414 1sij d1sija4 A:629-640,642-648,656-670,678-682 1sij d1sija4 A:370-379,381-387,391-404,409-414 1dgj d1dgja4 A:630-642,644-651,658-672,680-686 3b9j d3b9jc2 C:838-852,854-869,873-887,892-903 1fo4 d1fo4b5 B:838-852,854-869,871-887,892-903 1v97 d1v97a5 A:838-852,854-869,871-887,892-903 1v97 d1v97b5 B:838-852,854-869,871-887,892-903 1vdv d1vdvb5 B:838-852,854-869,871-887,892-903 1fo4 d1fo4a5 A:838-852,854-869,871-887,892-903 1vdv d1vdva5 A:838-852,854-869,871-887,892-903 1fiq d1fiqc2 C:838-852,854-869,871-887,892-903 1n5x d1n5xb5 B:838-852,854-869,871-887,892-904 1n5x d1n5xa5 A:838-852,854-869,871-887,892-904 1sb3 d1sb3a2 A:284-298,300-315,319-336,338-350 1sb3 d1sb3d2 D:284-298,300-315,319-336,338-350 1vlb d1vlba4 A:459-473,475-490,494-506,514-525 1sij d1sija4 A:459-473,475-490,494-506,514-525 1rm6 d1rm6a2 A:284-298,300-315,317-336,338-350 1rm6 d1rm6d2 D:284-298,300-315,317-336,338-350 1jrp d1jrph2 H:268-282,284-299,303-317,322-334 1dgj d1dgja4 A:461-475,477-492,496-508,515-527 1jrp d1jrpd2 D:268-282,284-299,303-317,322-334 1jrp d1jrpb2 B:268-282,284-299,303-317,322-334 1jrp d1jrpf2 F:268-282,284-299,303-317,322-334 1jro d1jrod2 D:268-282,284-299,303-317,322-334 1jro d1jrob2 B:268-282,284-299,303-317,322-334 1jro d1jroh2 H:268-282,284-299,303-317,322-334 1jro d1jrof2 F:268-282,284-299,303-317,322-334 1t3q d1t3qb2 B:295-308,310-325,332-344,351-362 1sb3 d1sb3a2 A:620-635,636-651,655-677,703-712 1dgj d1dgja4 A:765-780,781-795,800-822,847-853 1rm6 d1rm6d2 D:620-635,636-651,655-677,703-712 1t3q d1t3qe2 E:636-651,652-666,671-693,722-727 1sb3 d1sb3d2 D:620-635,636-651,655-677,703-712 1rm6 d1rm6a2 A:620-635,636-651,655-677,703-712 1n62 d1n62b2 B:655-671,672-686,691-713,742-747 1t3q d1t3qb2 B:636-651,652-666,671-693,722-727 1n62 d1n62e2 E:655-671,672-686,691-713,742-747 1n60 d1n60b2 B:655-671,672-686,691-713,742-747 1vlb d1vlba4 A:765-780,781-797,800-822,847-856 1fo4 d1fo4b5 B:1150-1167,1168-1182,1187-1209,1237-1244 1vdv d1vdva5 A:1152-1166,1169-1181,1187-1209,1237-1244 1n60 d1n60e2 E:655-671,672-686,691-713,742-747 1t3q d1t3qe2 E:295-308,310-325,332-344,351-363 1n63 d1n63b2 B:655-671,672-686,691-713,742-747 1n61 d1n61b2 B:655-671,672-686,691-713,742-747 1zxi d1zxib2 B:655-671,672-686,691-713,742-747 1sij d1sija4 A:765-780,781-796,800-822,847-856 1n61 d1n61e2 E:655-671,672-686,691-713,742-747 1n5w d1n5wb2 B:655-671,672-686,691-713,742-747 1n63 d1n63e2 E:655-671,672-686,691-713,742-747 1fo4 d1fo4a5 A:1150-1166,1169-1181,1187-1209,1237-1244 1n5w d1n5we2 E:655-671,672-686,691-713,742-747 1ffu d1ffub2 B:649-665,666-680,685-707,736-741 1ffu d1ffue2 E:649-665,666-680,685-707,736-741 1ffv d1ffvb2 B:649-665,666-680,685-707,736-741 1ffv d1ffve2 E:649-665,666-680,685-707,736-741 1vdv d1vdvb5 B:1152-1167,1168-1181,1187-1209,1237-1244 3b9j d3b9jc2 C:1150-1167,1168-1181,1187-1209,1237-1244 1n5x d1n5xa5 A:1150-1167,1168-1181,1187-1209,1237-1244 1n5x d1n5xb5 B:1150-1167,1168-1181,1187-1209,1237-1244 1fiq d1fiqc2 C:1150-1167,1168-1181,1187-1209,1237-1244 1v97 d1v97b5 B:1150-1167,1168-1181,1187-1209,1237-1244 1v97 d1v97a5 A:1151-1167,1168-1181,1187-1209,1237-1244 1jrp d1jrph2 H:621-636,637-650,656-679,706-713 1jrp d1jrpd2 D:621-636,637-650,656-679,706-713 1jrp d1jrpb2 B:621-636,637-650,656-679,706-713 1jro d1jrod2 D:621-636,637-650,656-679,706-713 1jro d1jroh2 H:621-636,637-650,656-679,706-713 1jro d1jrob2 B:621-636,637-650,656-679,706-713 1jrp d1jrpf2 F:621-636,637-650,656-679,706-713 1jro d1jrof2 F:621-636,637-650,656-679,706-713 28. d.154.1 DmpA/ArgJ-like convergent similarity to the Ntn amidohydrolases ! DmpA/ArgJ-like duplication of beta(3)-alpha-beta-alpha motif; 4 layers: alpha/beta/beta/alpha 1vz6 d1vz6a_ A:28-35,67-74,80-100,105-112 1vz6 d1vz6b_ B:28-35,67-74,80-100,105-112 1vz8 d1vz8a_ A:28-35,67-74,80-100,105-114 1vz7 d1vz7a_ A:28-35,67-74,80-100,105-114 1vz8 d1vz8b_ B:28-35,67-74,81-100,105-114 1vz7 d1vz7b_ B:28-35,67-74,81-100,105-112 1vz7 d1vz7d_ D:28-34,67-74,81-100,105-112 1vz7 d1vz7c_ C:28-35,67-74,81-98,105-114 1vz8 d1vz8d_ D:28-35,67-74,81-100,105-114 1vz8 d1vz8c_ C:28-35,67-74,81-100,105-114 1b65 d1b65d_ D:206-218,250-258,262-281,288-297 1b65 d1b65a_ A:206-218,250-258,262-281,288-297 1b65 d1b65c_ C:206-218,250-258,262-281,288-297 1b65 d1b65e_ E:206-218,250-258,262-281,288-297 1b65 d1b65b_ B:206-218,250-258,262-281,288-297 1b65 d1b65f_ F:206-218,250-258,262-281,288-297 1vz7 d1vz7c_ C:164-171,181-190,193-212,221-230 1vz7 d1vz7d_ D:163-171,181-190,193-212,221-230 1b65 d1b65f_ F:50-65,102-108,110-127,141-146 1b65 d1b65d_ D:50-65,102-108,110-127,141-146 1b65 d1b65c_ C:50-65,102-108,110-127,141-146 1b65 d1b65b_ B:50-65,102-108,110-127,141-146 1b65 d1b65a_ A:50-65,102-108,110-127,141-146 1b65 d1b65e_ E:50-65,102-108,110-127,141-146 1vz7 d1vz7a_ A:162-171,181-190,193-212,221-230 1vz8 d1vz8c_ C:162-171,181-190,193-212,221-230 1vz8 d1vz8a_ A:162-171,181-190,193-212,221-230 1vz8 d1vz8b_ B:162-171,181-190,193-212,221-230 1vz7 d1vz7b_ B:162-171,181-190,193-212,221-230 1vz6 d1vz6b_ B:162-171,181-190,193-212,221-230 1vz6 d1vz6a_ A:162-171,181-190,193-212,221-230 1vz8 d1vz8d_ D:162-171,181-190,193-212,221-230 30. d.80.1 Tautomerase/MIF Tautomerase/MIF (beta-alpha-beta)2; 2 layers: alpha/beta; mixed beta-sheet ! generally forms trimers with three closely packed beta-sheets 1u9d d1u9db_ B:0-8,53-60,63-83,88-95 1u9d d1u9da_ A:0-8,52-60,63-83,87-95 1hfo d1hfob_ B:1-8,56-64,71-88,93-101 3b9s d3b9sc1 C:1-8,56-64,68-88,93-101 1hfo d1hfoe_ E:1-8,56-64,71-88,93-101 2gdg d2gdga1 A:1-8,56-64,68-88,93-101 3b9s d3b9sa1 A:1-8,56-64,68-88,93-101 1dpt d1dpta_ A:1-8,56-64,69-89,94-102 3b9s d3b9sb1 B:1-8,56-64,68-88,93-101 1hfo d1hfoa_ A:1-8,56-64,71-88,93-101 1gcz d1gczb_ B:1-8,56-64,68-88,93-101 2ooz d2oozb1 B:1-8,56-64,68-88,93-101 1fim d1fima_ A:1-8,56-64,68-88,93-101 2ooz d2ooza1 A:1-8,56-64,68-88,93-101 2gdg d2gdgc1 C:1-8,56-64,68-88,93-101 1gcz d1gcza_ A:1-8,56-64,68-88,93-101 1gcz d1gczc_ C:1-8,56-64,68-88,93-101 2oow d2oowc1 C:1-8,56-64,68-88,93-101 1dpt d1dptb_ B:1-8,56-64,69-89,94-102 2oow d2oowa1 A:1-8,56-64,68-88,93-101 1dpt d1dptc_ C:1-8,56-64,69-89,94-102 1ca7 d1ca7b_ B:1-8,56-64,68-88,93-101 2oow d2oowb1 B:1-8,56-64,68-88,93-101 2ooh d2oohb1 B:1-8,56-64,68-88,93-101 1ca7 d1ca7a_ A:1-8,56-64,68-88,93-101 1gd0 d1gd0a_ A:1-8,56-64,68-88,93-101 1ca7 d1ca7c_ C:1-8,56-64,68-88,93-101 1gif d1gifc_ C:2-9,57-65,69-89,94-102 1gd0 d1gd0b_ B:1-8,56-64,68-88,93-101 2ooz d2oozc1 C:1-8,56-64,68-88,93-101 1gd0 d1gd0c_ C:1-8,56-64,68-88,93-101 2gdg d2gdgb1 B:1-8,56-64,68-88,93-101 1mif d1mifb_ B:2-9,57-65,69-89,94-102 2ooh d2oohc1 C:1-8,56-64,68-88,93-101 1p1g d1p1gc_ C:1-8,56-64,68-88,93-101 1hfo d1hfof_ F:1-8,56-64,68-88,93-101 1p1g d1p1gb_ B:1-8,56-64,68-88,93-101 2ooh d2ooha1 A:1-8,56-64,68-88,93-101 1p1g d1p1ga_ A:1-8,56-64,68-88,93-101 1hfo d1hfod_ D:1-8,56-64,68-88,93-101 1mff d1mffa_ A:1-8,56-64,68-88,93-101 1mfi d1mfic_ C:1-8,56-64,68-88,93-101 1mff d1mffc_ C:1-8,56-64,68-88,93-101 1ljt d1ljtc_ C:1-8,56-64,68-88,93-101 1uiz d1uizc_ C:0-8,56-64,68-88,93-101 1ljt d1ljtb_ B:1-8,56-64,68-88,93-101 1uiz d1uiza_ A:0-8,56-64,68-88,93-101 1uiz d1uizd_ D:0-8,56-64,68-88,93-101 1uiz d1uizb_ B:0-8,56-64,68-88,93-101 1ljt d1ljta_ A:1-8,56-64,68-88,93-101 1cgq d1cgqa_ A:0-8,56-64,68-88,93-101 1gif d1gifb_ B:1-9,57-65,69-89,94-102 1cgq d1cgqb_ B:0-8,56-64,68-88,93-101 1mif d1mifa_ A:2-9,57-65,69-89,94-102 1cgq d1cgqc_ C:0-8,56-64,68-88,93-101 1mfi d1mfib_ B:1-8,56-64,68-88,93-101 1mif d1mifc_ C:2-9,57-65,69-89,94-102 1mff d1mffb_ B:1-8,56-64,68-88,93-101 1mfi d1mfia_ A:1-8,56-64,68-88,93-101 1hfo d1hfoc_ C:1-8,56-64,68-88,93-101 1mww d1mwwc_ C:1-7,59-68,71-91,96-105 1mww d1mwwa_ A:1-7,59-68,71-91,96-105 1gif d1gifa_ A:1-9,57-65,69-89,94-102 1mww d1mwwb_ B:1-7,59-68,71-91,96-105 2aal d2aale1 E:1-8,65-73,76-96,101-109 2aal d2aalf1 F:1-8,65-73,76-96,101-109 2aal d2aalb1 B:1-8,65-73,76-96,101-109 2aal d2aala1 A:1-8,65-73,76-96,101-109 2aal d2aald1 D:1-8,65-73,76-96,101-109 2aal d2aalc1 C:1-8,65-73,76-96,101-109 2aag d2aage1 E:1-9,65-73,76-96,101-109 2aag d2aagc1 C:1-9,65-73,76-96,101-109 2aag d2aagd1 D:1-9,65-73,76-96,101-109 2aag d2aagf1 F:1-9,65-73,76-96,101-109 2aag d2aaga1 A:1-9,65-73,76-96,101-109 2aag d2aagb1 B:1-9,65-73,76-96,101-109 1otg d1otgb_ B:2-10,59-69,73-93,100-110 2aaj d2aaja1 A:1-9,65-73,76-96,101-109 1otg d1otgc_ C:2-10,59-69,73-93,100-110 2aaj d2aajb1 B:1-9,65-73,76-96,101-109 1otg d1otga_ A:2-10,59-69,73-93,100-110 34. d.165.1 Ribosome inactivating proteins (RIP) Ribosome inactivating proteins (RIP) contains mixed beta-sheet 1qcj d1qcja_ A:70-80,84-92,94-107,111-120 1qcj d1qcjb_ B:70-80,84-92,94-107,111-120 1j1q d1j1qa_ A:70-81,82-90,93-106,110-117 1j1r d1j1ra_ A:70-81,82-90,93-106,110-117 1j1s d1j1sa_ A:70-81,82-90,93-106,110-117 1sz6 d1sz6a_ A:74-83,84-91,95-102,104-112 1gik d1gika_ A:70-81,82-90,93-106,110-117 1paf d1pafa_ A:70-81,83-92,94-107,111-120 1d6a d1d6aa_ A:70-81,83-92,94-107,111-120 1pag d1paga_ A:70-81,83-92,94-107,111-120 1pag d1pagb_ B:70-81,83-92,94-107,111-120 1d6a d1d6ab_ B:70-81,83-92,94-107,111-120 1ahc d1ahca_ A:68-77,78-85,85-95,100-108 1ggp d1ggpa_ A:72-81,82-89,91-100,102-110 1apa d1apaa_ A:75-86,87-96,99-112,116-125 1qci d1qcib_ B:70-81,83-92,94-107,111-120 1qcg d1qcga_ A:70-81,83-92,94-107,111-120 2jdl d2jdlb1 B:68-77,78-85,85-95,100-108 1puu d1puua_ A:74-83,84-91,95-102,104-112 1ahb d1ahba_ A:68-77,78-85,85-95,100-108 1qci d1qcia_ A:70-81,83-92,94-107,111-120 1tcs d1tcsa_ A:68-77,78-85,85-95,100-108 1qcg d1qcgb_ B:70-81,83-92,94-107,111-120 1hwo d1hwoa_ A:75-84,85-91,94-101,105-111 1mrk d1mrka_ A:68-77,78-85,85-95,100-108 1qd2 d1qd2a_ A:68-77,78-85,85-95,100-108 1nli d1nlia_ A:68-77,78-85,85-95,100-108 1abr d1abra_ A:72-81,82-88,91-100,102-110 1mrj d1mrja_ A:68-77,78-85,85-95,100-108 1hwp d1hwpa_ A:75-84,85-91,94-101,105-111 1j4g d1j4gb_ B:68-77,78-85,85-95,100-108 1giu d1giua_ A:68-77,78-85,85-95,100-108 3ctk d3ctka1 A:68-79,80-89,91-98,104-111 1mri d1mria_ A:68-77,78-85,85-95,100-108 1paf d1pafb_ B:70-81,83-92,94-107,111-120 1j4g d1j4gd_ D:68-77,78-85,85-95,100-108 1bry d1bryz_ Z:68-77,78-85,85-95,100-108 1bry d1bryy_ Y:68-77,78-85,85-95,100-108 1hwn d1hwna_ A:75-84,85-91,94-101,105-111 1j4g d1j4gc_ C:68-77,78-85,85-95,100-108 1hwm d1hwma_ A:75-84,85-91,94-101,105-111 2q3n d2q3na1 A:72-80,81-87,90-97,101-107 1cf5 d1cf5a_ A:68-77,78-84,87-94,98-104 1cf5 d1cf5b_ B:68-77,78-84,87-94,98-104 1d8v d1d8va_ A:68-77,78-83,83-96,98-103 1f8q d1f8qa_ A:68-77,78-84,85-95,100-106 1mrg d1mrga_ A:68-77,78-84,85-95,100-106 1mom d1moma_ A:68-77,78-84,85-95,100-106 1qi7 d1qi7a_ A:70-81,83-90,95-104,110-114 1lpc d1lpca_ A:71-82,84-91,96-105,111-115 1lpd d1lpda_ A:71-82,84-91,96-105,111-115 2r2x d2r2xa1 A:78-87,88-94,97-109,112-118 2pjo d2pjoa1 A:78-87,88-94,97-109,112-118 1uq4 d1uq4a_ A:78-87,88-94,97-109,112-118 1lp8 d1lp8a_ A:71-82,84-91,96-105,111-115 1rtc d1rtca_ A:78-87,88-94,97-109,112-118 1ifu d1ifua_ A:78-87,88-94,97-109,112-118 2r3d d2r3da1 A:78-87,88-94,97-109,112-118 1ift d1ifta_ A:78-87,88-94,97-109,112-118 1br5 d1br5a_ A:78-87,88-94,97-109,112-118 1uq5 d1uq5a_ A:78-87,88-94,97-109,112-118 2p8n d2p8na1 A:78-87,88-94,97-109,112-118 1obs d1obsa_ A:78-87,88-94,97-109,112-118 1ifs d1ifsa_ A:78-87,88-94,97-109,112-118 1obt d1obta_ A:78-87,88-94,97-109,112-118 1j1m d1j1ma_ A:78-87,88-94,97-109,112-118 1il5 d1il5a_ A:78-87,88-94,97-109,112-118 1rl0 d1rl0a_ A:71-82,84-91,96-105,111-115 1br6 d1br6a_ A:78-87,88-94,97-109,112-118 1il3 d1il3a_ A:78-87,88-94,97-107,112-118 1il4 d1il4a_ A:78-87,88-94,97-107,112-118 2aai d2aaia_ A:78-87,88-94,97-109,113-118 1il9 d1il9a_ A:78-87,88-94,97-107,112-118 1rzo d1rzoa_ A:1078-1087,1088-1094,1097-1109,1113-1118 1nio d1nioa_ A:69-78,79-84,86-96,100-105 1gis d1gisa_ A:69-78,79-84,86-96,101-106 1aha d1ahaa_ A:68-77,78-83,85-95,100-105 2jdl d2jdla1 A:68-77,78-83,85-95,100-105 1il5 d1il5b_ B:78-87,88-94,97-107,112-118 1mrh d1mrha_ A:68-77,78-83,85-95,100-105 1j4g d1j4ga_ A:68-77,78-83,85-95,100-105 1rzo d1rzoc_ C:1078-1087,1088-1094,1097-1109,1113-1118 35. d.333.1 UbiD C-terminal domain-like UbiD C-terminal domain-like alpha-beta(2)-alpha-beta-alpha-beta(2); 3 layers, a/b/a; mixed beta-sheet, order: 12354, strands 2,3 and 5 are parallel to each other 2idb d2idba2 A:350-357,364-371,376-390,396-403 2idb d2idbc2 C:350-357,364-371,376-390,396-403 2idb d2idbb2 B:350-356,364-371,376-390,396-403 36. e.17.1 D-aminoacid aminotransferase-like PLP-dependent enzymes D-aminoacid aminotransferase-like PLP-dependent enzymes 2 domains: (1) alpha+beta: beta3-alpha2-beta2; (2) alpha/beta, a part of its mixed sheet forms barrel: n=6, S=8 1i2l d1i2la_ A:176-184,185-190,199-213,214-219 1i2k d1i2ka_ A:176-184,185-190,199-213,214-219 1et0 d1et0a_ A:196-204,205-210,219-233,234-239 1a3g d1a3ga_ A:196-204,205-210,219-233,235-239 1iye d1iyeb_ B:196-204,205-210,219-233,235-239 1iyd d1iydb_ B:196-204,205-210,219-233,235-239 1iyd d1iydc_ C:196-204,205-210,219-233,235-239 1g2w d1g2wa_ A:180-188,189-194,203-217,219-223 1iyd d1iyda_ A:196-204,205-210,219-233,235-239 1daa d1daaa_ A:180-188,189-194,203-217,219-223 1iye d1iyec_ C:196-204,205-210,219-233,235-239 2dab d2dabb_ B:180-188,189-194,203-217,219-223 4daa d4daaa_ A:180-188,189-194,203-217,219-223 4daa d4daab_ B:180-188,189-194,203-217,219-223 1a0g d1a0gb_ B:180-188,189-194,203-217,219-223 1iye d1iyea_ A:196-204,205-210,219-233,235-239 1g2w d1g2wb_ B:180-188,189-194,203-217,219-223 3daa d3daab_ B:180-188,189-194,203-217,219-223 1a3g d1a3gb_ B:196-204,205-210,219-233,235-239 1i1k d1i1ka_ A:196-204,205-210,219-233,235-239 1i1k d1i1kc_ C:1196-1204,1205-1210,1219-1233,1235-1239 1a0g d1a0ga_ A:180-188,189-194,203-217,219-223 2daa d2daaa_ A:180-188,189-194,203-217,219-223 1daa d1daab_ B:180-188,189-194,203-217,219-223 5daa d5daab_ B:180-188,189-194,203-217,219-223 1i1k d1i1kb_ B:696-704,705-710,719-733,735-739 2dab d2daba_ A:180-188,189-194,203-217,219-223 2daa d2daab_ B:180-188,189-194,203-217,219-223 1i1l d1i1lb_ B:696-704,705-710,719-733,735-739 1i1m d1i1mb_ B:696-704,705-710,719-733,735-739 1i1l d1i1la_ A:196-204,205-210,219-233,235-239 1i1m d1i1ma_ A:196-204,205-210,219-233,235-239 1i1l d1i1lc_ C:1196-1204,1205-1210,1219-1233,1235-1239 1a3g d1a3gc_ C:196-204,205-210,219-233,235-239 3daa d3daaa_ A:180-188,189-194,203-217,219-223 1i1m d1i1mc_ C:1196-1204,1205-1210,1219-1233,1235-1239 5daa d5daaa_ A:180-188,189-194,203-217,219-223 2a1h d2a1hb1 B:240-250,252-259,268-282,284-289 2hhf d2hhfb1 B:740-750,752-759,768-782,784-789 2a1h d2a1ha1 A:240-250,252-259,268-282,284-289 1ekf d1ekfb_ B:240-250,252-259,268-282,284-289 1kt8 d1kt8a_ A:240-250,252-259,268-282,284-289 2hhf d2hhfa1 A:240-250,252-259,268-282,284-289 1kt8 d1kt8b_ B:740-750,752-759,768-782,784-789 1kta d1ktab_ B:740-750,752-759,768-782,784-789 1kta d1ktaa_ A:240-250,252-259,268-282,284-289 1ekp d1ekpb_ B:240-250,252-259,268-282,284-289 1ekp d1ekpa_ A:240-250,252-259,268-282,284-289 1ekf d1ekfa_ A:240-250,252-259,268-282,285-289 1ekv d1ekva_ A:240-250,252-259,268-282,285-289 1ekv d1ekvb_ B:240-250,252-259,268-282,285-289 37. d.151.1 DNase I-like DNase I-like contains beta-sandwich; duplication of alpha+beta motif 2f1n d2f1na1 A:119-128,129-137,143-159,167-175 2f2f d2f2fb1 B:145-152,153-161,166-184,192-200 2f2f d2f2fe1 E:145-152,153-161,166-184,192-200 1sr4 d1sr4b_ B:145-152,153-161,166-182,192-200 2isi d2isib1 B:156-163,164-172,179-203,204-210 1atn d1atnd_ D:113-120,126-135,139-159,162-168 2a42 d2a42b1 B:113-120,126-135,139-159,162-168 1dnk d1dnka_ A:113-120,126-135,139-159,162-168 1dew d1dewb_ B:156-163,164-172,179-204,204-210 3cjc d3cjcd1 D:113-120,126-135,139-159,162-168 2a40 d2a40e1 E:113-120,126-135,139-159,162-168 2isi d2isia1 A:156-163,164-172,179-204,204-211 2a40 d2a40b1 B:113-120,126-135,139-159,162-168 2dnj d2dnja_ A:112-120,126-135,139-159,162-168 1dew d1dewa_ A:156-163,164-172,179-204,204-210 2a3z d2a3zb1 B:113-120,126-135,139-159,162-168 2a41 d2a41b1 B:113-120,126-135,139-159,162-168 1hd7 d1hd7a_ A:156-163,164-172,179-204,204-210 3dni d3dnia_ A:113-120,126-135,139-159,162-168 1de9 d1de9b_ B:156-163,164-172,179-204,204-210 1bix d1bixa_ A:156-163,164-172,179-204,204-210 1e9n d1e9nb_ B:156-163,164-172,179-204,204-210 2d1k d2d1kb1 B:113-120,126-135,139-159,162-168 1e9n d1e9na_ A:156-163,164-172,179-204,204-210 1de9 d1de9a_ A:156-163,164-172,179-204,204-210 1de8 d1de8a_ A:156-163,164-172,179-204,204-210 2isi d2isic1 C:156-163,164-172,179-204,204-210 1vyb d1vyba_ A:96-105,106-116,120-133,139-146 1vyb d1vybb_ B:96-105,106-116,120-133,139-146 1de8 d1de8b_ B:156-163,164-172,179-201,204-210 1wdu d1wdub_ B:107-116,117-127,132-148,151-158 1wdu d1wdua_ A:107-116,117-127,132-148,151-158 2dds d2ddsb1 B:131-141,142-152,163-183,189-195 2dds d2ddsc1 C:131-141,142-152,163-183,189-195 2ddr d2ddra1 A:131-141,142-152,163-183,189-195 2dds d2ddsd1 D:131-141,142-152,163-183,189-195 2ddr d2ddrb1 B:131-141,142-152,163-183,189-195 2dds d2ddsa1 A:131-141,142-152,163-183,189-195 2ddr d2ddrc1 C:131-141,142-152,163-183,189-195 2ddt d2ddta1 A:131-141,142-152,163-183,189-195 2ddr d2ddrd1 D:131-141,142-152,163-183,189-195 2ddt d2ddtb1 B:131-141,142-152,163-183,189-195 1i9y d1i9ya_ A:679-689,690-700,706-722,733-740 1i9z d1i9za_ A:679-689,690-700,706-722,733-740 1zwx d1zwxa1 A:165-175,176-186,194-217,223-229 1ako d1akoa_ A:91-99,100-110,118-140,145-151 38. c.45.1 (Phosphotyrosine protein) phosphatases II share with the family I the common active site structure with a circularly permuted topology ! (Phosphotyrosine protein) phosphatases II core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 1423 3d1h d3d1ha1 A:68-73,101-107,109-125,245-253 3d1q d3d1qa1 A:68-73,101-107,109-125,245-253 2psz d2psza1 A:68-73,101-107,109-125,245-253 1u24 d1u24a_ A:57-62,90-96,98-113,234-242 3d1h d3d1hb1 B:68-73,101-107,109-125,245-253 3d1o d3d1oa1 A:68-73,101-107,109-125,245-253 1u25 d1u25b_ B:57-62,90-96,98-114,234-242 1u26 d1u26b_ B:57-62,90-96,98-114,234-242 2pt0 d2pt0b1 B:68-73,101-107,109-125,245-253 3d1o d3d1ob1 B:68-73,101-107,109-125,245-253 3d1q d3d1qb1 B:68-73,101-107,109-125,245-253 1u24 d1u24b_ B:57-62,90-96,98-114,234-242 1lw3 d1lw3a2 A:268-275,278-286,296-311,411-418 2psz d2pszb1 B:68-73,101-107,109-125,245-253 2pt0 d2pt0a1 A:67-73,101-107,109-125,245-253 1u25 d1u25c_ C:57-62,90-96,98-114,234-242 1m7r d1m7rb2 B:268-276,277-286,296-311,411-418 1u25 d1u25a_ A:57-62,90-96,98-114,234-242 1zvr d1zvra2 A:266-276,277-286,296-311,411-418 1zsq d1zsqa2 A:266-276,277-286,296-311,411-418 1m7r d1m7ra2 A:268-276,277-286,296-311,411-418 1p15 d1p15b_ B:582-587,594-600,602-617,719-725 1lar d1larb1 B:1381-1386,1393-1398,1401-1416,1517-1522 1gwz d1gwza_ A:305-310,322-327,330-345,450-455 1yfo d1yfoa_ A:288-293,300-305,308-323,428-433 1jln d1jlna_ A:340-345,353-358,361-376,475-480 1yfo d1yfob_ B:288-293,300-305,308-323,428-433 1lar d1lara1 A:1381-1386,1393-1398,1401-1416,1517-1522 1i9t d1i9ta_ A:15-21,23-28,46-58,120-127 1i9s d1i9sa_ A:15-21,23-28,46-58,120-127 1ohe d1ohea2 A:215-220,223-228,244-256,309-315 1p15 d1p15a_ A:582-587,594-600,602-617,719-725 1ohd d1ohda2 A:214-220,223-228,244-256,309-315 2shp d2shpb1 B:306-311,326-332,334-349,454-460 2shp d2shpa1 A:306-311,326-332,334-349,454-460 1lar d1larb2 B:1670-1675,1682-1687,1690-1705,1808-1813 1lar d1lara2 A:1670-1675,1682-1688,1690-1705,1808-1814 1rpm d1rpmb_ B:955-960,967-973,975-990,1090-1095 1rpm d1rpma_ A:955-960,967-973,975-990,1090-1095 1ohc d1ohca2 A:215-220,223-229,244-256,309-315 1u26 d1u26a_ A:57-62,90-96,98-110,234-242 1r6h d1r6ha_ A:12-18,19-26,32-44,100-107 1d5r d1d5ra2 A:24-28,31-37,49-62,118-125 1fpr d1fpra_ A:305-310,322-328,333-345,450-455 2q47 d2q47a1 A:57-63,65-71,73-84,145-151 1c86 d1c86a_ A:68-76,77-86,88-103,210-216 1xri d1xria_ A:57-63,65-71,73-84,145-151 1aax d1aaxa_ A:68-76,77-86,88-103,210-216 1xri d1xrib_ B:57-63,65-71,73-84,145-151 2q47 d2q47b1 B:57-63,65-71,73-84,145-151 2oz5 d2oz5a1 A:10-15,26-32,37-48,155-161 1i57 d1i57a_ A:68-76,77-86,88-103,210-217 1ywf d1ywfa1 A:10-15,26-32,37-48,155-161 2oz5 d2oz5b1 B:11-15,26-32,37-48,155-161 1kak d1kaka_ A:68-75,78-85,88-103,210-215 1v3a d1v3aa_ A:9-15,16-22,29-41,99-103 1j4x d1j4xa_ A:29-33,36-41,47-55,119-124 1vhr d1vhra_ A:29-33,36-41,47-55,119-124 1eeo d1eeoa_ A:68-75,78-85,88-103,210-215 2cm7 d2cm7a1 A:68-75,78-85,88-103,210-215 1jf7 d1jf7a_ A:68-75,78-85,88-103,210-215 1bzh d1bzha_ A:68-76,77-85,88-103,210-215 2h4k d2h4ka1 A:68-76,77-85,88-103,210-215 2f6y d2f6ya1 A:68-76,77-85,88-103,210-215 2f6t d2f6ta1 A:68-76,77-85,88-103,210-215 1g7f d1g7fa_ A:68-76,77-85,88-103,210-215 2f6v d2f6va1 A:68-76,77-85,88-103,210-215 2f71 d2f71a1 A:68-76,77-85,88-103,210-215 2f6z d2f6za1 A:68-76,77-85,88-103,210-215 2b07 d2b07a1 A:68-76,77-85,88-103,210-215 2b4s d2b4sa1 A:68-76,77-85,88-103,210-215 2f6w d2f6wa1 A:68-76,77-85,88-103,210-215 1gfy d1gfya_ A:68-76,77-85,88-103,210-215 2hb1 d2hb1a1 A:68-76,77-85,88-103,210-215 1pa1 d1pa1a_ A:568-576,577-585,588-603,710-715 1sug d1suga_ A:68-76,77-85,88-103,210-215 2f70 d2f70a1 A:68-76,77-85,88-103,210-215 2h4g d2h4ga1 A:68-76,77-85,88-103,210-215 1wax d1waxa1 A:68-76,77-85,88-103,210-215 1bzj d1bzja_ A:68-76,77-85,88-103,210-215 1g7g d1g7ga_ A:68-76,77-85,88-103,210-215 1a5y d1a5ya_ A:68-76,77-85,88-103,210-215 2hnq d2hnqa_ A:68-76,77-85,88-103,210-215 1q1m d1q1ma_ A:68-76,77-85,88-103,210-215 2cng d2cnga1 A:68-76,77-85,88-103,210-215 1pxh d1pxha_ A:68-76,77-85,88-103,210-216 2azr d2azra1 A:68-76,77-85,88-103,210-215 1een d1eena_ A:68-76,77-85,88-103,210-215 1pty d1ptya_ A:68-76,77-85,88-103,210-215 2cma d2cmaa1 A:68-76,77-85,88-103,210-215 2hnp d2hnpa_ A:68-76,77-85,88-103,210-215 2cmc d2cmca1 A:68-76,77-85,88-103,210-216 2cnh d2cnha1 A:68-76,77-85,88-103,210-215 1onz d1onza_ A:68-76,77-85,88-103,210-215 1qxk d1qxka_ A:68-76,77-85,88-103,210-215 1vhr d1vhrb_ B:29-33,36-41,47-55,119-124 2cm8 d2cm8a1 A:68-76,77-85,88-103,210-215 2cni d2cnia1 A:68-76,77-85,88-103,210-215 2bgd d2bgda1 A:68-76,77-85,88-103,210-215 2cnf d2cnfa1 A:68-76,77-85,88-103,210-215 2bge d2bgea1 A:68-76,77-85,88-103,210-215 1nwe d1nwea_ A:68-76,77-85,88-103,210-215 1nwl d1nwla_ A:68-76,77-85,88-103,210-215 2cmb d2cmba1 A:68-76,77-85,88-103,210-215 1ptv d1ptva_ A:68-76,77-85,88-103,210-215 1q6s d1q6sb_ B:1068-1076,1077-1085,1088-1103,1210-1216 1l8g d1l8ga_ A:68-76,77-85,88-103,210-215 1c83 d1c83a_ A:68-76,77-85,88-103,210-215 1pyn d1pyna_ A:68-76,77-85,88-103,210-215 1q6s d1q6sa_ A:568-576,577-585,588-603,710-715 1xbo d1xboa_ A:68-76,77-85,88-103,210-215 1ptu d1ptua_ A:68-76,77-85,88-103,210-215 2cne d2cnea1 A:68-76,77-85,88-103,210-216 1ecv d1ecva_ A:68-76,77-85,88-103,210-215 1c85 d1c85a_ A:68-76,77-85,88-103,210-215 1bzc d1bzca_ A:68-76,77-85,88-103,210-216 1c87 d1c87a_ A:68-76,77-85,88-103,210-215 1no6 d1no6a_ A:68-76,77-85,88-103,210-215 1t4j d1t4ja_ A:68-76,77-85,88-103,210-215 1nny d1nnya_ A:68-76,77-85,88-103,210-215 2cm3 d2cm3a1 A:68-76,77-85,88-103,210-215 1c88 d1c88a_ A:68-76,77-85,88-103,210-215 1oev d1oeva_ A:68-76,77-85,88-103,210-215 1ptt d1ptta_ A:68-76,77-85,88-103,210-215 1g1f d1g1fa_ A:68-76,77-85,88-103,210-215 1q6t d1q6tb_ B:1068-1076,1077-1085,1088-1103,1210-1216 1t49 d1t49a_ A:68-76,77-85,88-103,210-215 1nl9 d1nl9a_ A:68-76,77-85,88-103,210-215 1ytw d1ytwa_ A:245-252,253-260,263-278,398-404 1nz7 d1nz7a_ A:68-76,77-85,88-103,210-215 1kav d1kava_ A:68-76,77-85,88-103,210-216 1q6m d1q6ma_ A:68-76,77-85,88-103,210-216 1l8k d1l8ka_ A:70-78,79-87,90-105,211-216 1pa9 d1pa9a_ A:83-90,91-98,101-116,236-242 1lyv d1lyva_ A:245-252,253-260,263-278,398-404 2cm3 d2cm3b1 B:68-76,77-85,88-103,210-215 1ph0 d1ph0a_ A:68-76,77-85,88-103,210-215 1oet d1oeta_ A:68-76,77-85,88-103,210-215 1ony d1onya_ A:68-76,77-85,88-103,210-215 1q6n d1q6na_ A:568-576,577-585,588-603,710-716 1g1g d1g1ga_ A:68-76,77-85,88-103,210-215 1c84 d1c84a_ A:68-76,77-85,88-103,210-215 1lqf d1lqfd_ D:568-576,577-585,588-603,710-715 1oeo d1oeox_ X:68-76,77-85,88-103,210-215 1lqf d1lqfa_ A:568-576,577-585,588-603,710-715 1lqf d1lqfb_ B:568-576,577-585,588-603,710-715 1q6j d1q6ja_ A:68-76,77-85,88-103,210-216 1yts d1ytsa_ A:245-252,253-260,263-278,398-404 1q6p d1q6pb_ B:1068-1076,1077-1085,1088-1103,1210-1216 1lqf d1lqfc_ C:568-576,577-585,588-603,710-715 1q6t d1q6ta_ A:568-576,577-585,588-603,710-716 1ypt d1ypta_ A:245-252,253-260,263-278,398-404 2i42 d2i42a1 A:245-252,253-260,263-278,398-404 1q6p d1q6pa_ A:568-576,577-585,588-603,710-716 2cm2 d2cm2a1 A:68-76,77-85,88-103,210-215 1q6n d1q6nb_ B:1068-1076,1077-1085,1088-1103,1210-1215 1oes d1oesa_ A:68-76,77-85,88-103,210-216 1jf7 d1jf7b_ B:68-76,77-85,88-103,210-215 1oem d1oemx_ X:68-76,77-85,88-103,210-216 1oeu d1oeua_ A:68-76,77-85,88-103,210-215 1t48 d1t48a_ A:68-76,77-85,88-103,210-215 1xxv d1xxvb1 B:245-252,253-260,263-278,398-404 1xxv d1xxva1 A:245-252,253-260,263-278,398-404 1ypt d1yptb_ B:245-252,253-260,263-278,398-404 1qz0 d1qz0b_ B:245-252,253-260,263-278,398-404 1qz0 d1qz0a_ A:245-252,253-260,263-278,398-404 1xxp d1xxpa1 A:245-252,253-260,263-278,398-404 1g1h d1g1ha_ A:68-76,77-85,88-103,210-215 1xxp d1xxpb1 B:245-252,253-260,263-278,398-404 1ytn d1ytna_ A:245-252,253-260,263-278,398-404 3blu d3blua1 A:245-252,253-260,263-278,399-404 1rxd d1rxdc_ C:8-14,15-21,25-40,98-103 1rxd d1rxdb_ B:8-14,15-21,25-40,98-103 1rxd d1rxda_ A:8-14,15-21,25-40,98-103 1wch d1wcha_ A:2264-2273,2274-2283,2286-2301,2403-2408 1g4w d1g4wr2 R:333-339,340-347,353-368,475-481 1g4u d1g4us2 S:333-339,340-347,353-368,475-481 1fpz d1fpzf_ F:29-34,41-46,59-71,135-140 1fpz d1fpzc_ C:29-34,41-46,59-71,135-140 1fpz d1fpzd_ D:29-35,40-46,59-71,135-140 1fq1 d1fq1a_ A:29-34,41-46,59-71,135-140 40. c.52.2 tRNA-intron endonuclease catalytic domain-like Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest 1a79 d1a79d1 D:109-115,126-135,140-155,156-165 2gjw d2gjwb2 B:242-249,260-268,273-288,289-296 2gjw d2gjwd2 D:243-250,261-268,274-289,290-297 2gjw d2gjwc2 C:242-249,260-268,273-288,289-296 2gjw d2gjwa2 A:243-250,261-268,274-289,290-297 1r11 d1r11a2 A:240-247,258-265,271-286,287-294 1r0v d1r0vb2 B:240-247,259-265,271-286,287-294 1r0v d1r0vd2 D:240-247,259-265,271-286,287-294 1r0v d1r0va2 A:240-247,259-266,271-286,287-294 1r0v d1r0vc2 C:240-247,259-265,271-286,287-294 1r11 d1r11b2 B:240-247,258-266,271-286,287-294 1a79 d1a79b1 B:109-115,127-135,140-155,156-165 1rlv d1rlvb2 B:240-247,259-266,271-286,287-294 1rlv d1rlva2 A:240-247,259-266,271-286,287-294 1a79 d1a79c1 C:109-117,126-135,140-155,156-165 1a79 d1a79a1 A:109-117,126-135,140-155,156-165 1rlv d1rlva1 A:85-89,91-98,103-115,116-124 1rlv d1rlvb1 B:85-89,91-98,103-115,116-124 2gjw d2gjwc1 C:87-91,93-100,105-117,118-126 2gjw d2gjwb1 B:87-91,93-100,105-117,118-126 1r11 d1r11b1 B:85-89,91-98,103-115,116-124 2gw6 d2gw6a1 A:53-62,69-76,81-97,103-112 2gw6 d2gw6b1 B:353-362,369-376,381-397,403-412 1r0v d1r0va1 A:85-89,91-98,103-112,116-124 1r0v d1r0vd1 D:85-89,91-98,103-112,116-124 1r0v d1r0vb1 B:85-89,91-98,103-112,116-124 1r11 d1r11a1 A:85-89,91-98,103-112,116-124 2gjw d2gjwd1 D:88-92,94-101,106-118,120-127 2gjw d2gjwa1 A:88-92,94-101,106-118,120-127 1r0v d1r0vc1 C:85-89,91-98,103-112,117-124 44. c.55.2 Creatinase/prolidase N-terminal domain Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest 1chm d1chma1 A:66-72,73-81,83-91,94-100 1chm d1chmb1 B:66-72,73-81,83-91,94-100 1kp0 d1kp0b1 B:66-72,73-81,83-91,93-99 1kp0 d1kp0a1 A:66-72,73-81,83-91,93-99 1pv9 d1pv9a1 A:40-46,47-55,57-65,68-73 2bwy d2bwya1 A:60-68,70-79,94-103,105-110 2bwt d2bwta1 A:59-68,70-79,94-103,105-109 1a16 d1a16a1 A:59-68,70-79,94-103,105-109 2bwu d2bwua1 A:59-68,70-79,94-103,105-109 1jaw d1jawa1 A:59-68,70-79,94-103,105-109 1wlr d1wlra1 A:59-68,70-79,94-103,105-109 1n51 d1n51a1 A:59-68,70-79,94-103,105-109 1pv9 d1pv9b1 B:40-46,47-54,57-65,68-72 1m35 d1m35c1 C:59-68,70-79,94-103,105-109 2bn7 d2bn7a1 A:59-68,70-79,94-103,105-109 1m35 d1m35f1 F:59-68,70-79,94-103,105-109 1m35 d1m35b1 B:59-68,70-79,94-103,105-109 2bha d2bhaa1 A:59-68,70-79,94-103,105-109 1wbq d1wbqd1 D:59-68,70-79,94-103,105-109 1m35 d1m35d1 D:59-68,70-79,94-103,105-109 2bh3 d2bh3a1 A:59-68,70-79,94-103,105-109 1m35 d1m35e1 E:59-68,70-79,94-103,105-109 1wbq d1wbqb1 B:59-68,70-79,94-103,105-109 1wbq d1wbqc1 C:59-68,70-79,94-103,105-109 1m35 d1m35a1 A:59-68,70-79,94-103,105-109 1w7v d1w7vd1 D:59-68,70-79,94-103,105-109 2bwv d2bwva1 A:59-68,70-79,94-103,105-109 2v3y d2v3ya1 A:59-68,70-79,94-103,105-109 1wbq d1wbqa1 A:59-68,70-79,94-103,105-109 1w7v d1w7va1 A:59-68,70-79,94-103,105-109 2bww d2bwwa1 A:59-68,70-79,94-103,105-109 1w2m d1w2mb1 B:59-68,70-79,94-103,105-109 1w7v d1w7vb1 B:59-68,70-79,94-103,105-109 1w2m d1w2mc1 C:59-68,70-79,94-103,105-109 2bws d2bwsa1 A:59-68,70-79,94-103,105-109 1w7v d1w7vc1 C:59-68,70-79,94-103,105-109 1wl6 d1wl6a1 A:59-68,70-79,94-103,105-109 2bhd d2bhda1 A:59-68,70-79,94-103,105-109 1wl9 d1wl9a1 A:59-68,70-79,94-103,105-109 2v3x d2v3xa1 A:59-68,70-79,94-103,105-109 2bhb d2bhba1 A:59-68,70-79,94-103,105-109 2bwx d2bwxa1 A:59-68,70-79,94-103,105-109 2bhc d2bhca1 A:59-68,70-79,94-103,105-109 1w2m d1w2ma1 A:59-68,70-79,94-103,105-109 2v3z d2v3za1 A:59-68,70-79,94-103,105-109 1w2m d1w2mf1 F:59-68,70-79,94-103,105-109 1w2m d1w2md1 D:59-68,70-79,94-103,105-109 1w2m d1w2me1 E:59-68,70-79,94-103,105-109 45. d.328.1 CorA soluble domain-like CorA soluble domain-like beta(2)-alpha-beta-alpha(2)-beta(4)-alpha(3); 3 layers: a/b/a; mixed beta-sheet, order 2137654; strands 3 and 7 are parallel 2bbh d2bbha1 A:27-36,59-66,69-81,134-141 2iub d2iubd1 D:27-36,58-66,69-81,134-141 2iub d2iubj1 J:27-36,58-66,69-81,134-141 2iub d2iubf1 F:27-36,58-66,69-81,134-141 2iub d2iuba1 A:27-36,58-66,69-81,134-141 2bbj d2bbjd1 D:27-36,59-66,69-81,134-141 2iub d2iubi1 I:27-36,58-66,69-81,134-141 2iub d2iubg1 G:27-36,58-66,69-81,134-141 2iub d2iubh1 H:27-36,58-66,69-81,134-141 2iub d2iube1 E:27-36,58-66,69-81,134-141 2iub d2iubc1 C:27-36,58-66,69-81,134-141 2iub d2iubb1 B:27-36,58-66,69-81,134-141 2bbj d2bbjf1 F:27-36,58-66,69-81,134-141 2bbj d2bbja1 A:27-36,58-66,69-81,134-141 2hn2 d2hn2a1 A:1027-1036,1058-1066,1069-1081,1134-1141 2hn2 d2hn2b1 B:2027-2036,2058-2066,2069-2081,2134-2141 2hn2 d2hn2d1 D:4027-4036,4058-4066,4069-4081,4134-4141 2hn2 d2hn2c1 C:3027-3036,3058-3066,3069-3081,3134-3141 2hn2 d2hn2e1 E:5027-5036,5058-5066,5069-5081,5134-5141 2bbj d2bbjb1 B:27-36,58-66,69-81,134-141 2bbj d2bbje1 E:27-36,58-66,69-81,134-141 48. d.52.10 EspE N-terminal domain-like contains extra C-terminal helix that packs against shorter N-terminal helix Alpha-lytic protease prodomain-like core: alpha-beta(2)-(alpha)-beta; 2 layers: alpha/beta 2d27 d2d27a1 A:95-103,104-111,115-127,129-135 2d28 d2d28c1 C:95-103,104-111,115-127,129-135 2bh1 d2bh1x1 X:26-32,37-43,47-59,62-67 2bh1 d2bh1y1 Y:26-32,37-43,47-59,62-67 49. d.58.28 Peptide methionine sulfoxide reductase common fold is elaborated with additional secondary structures ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 1fvg d1fvga_ A:63-71,156-161,163-185,191-195 1fva d1fvaa_ A:63-71,156-161,163-185,191-195 1fva d1fvab_ B:63-71,156-161,163-185,191-195 1nwa d1nwaa_ A:4-12,93-99,100-118,126-131 1ff3 d1ff3b_ B:42-50,135-141,142-164,171-176 1ff3 d1ff3a_ A:42-50,135-141,142-164,171-176 1ff3 d1ff3c_ C:42-50,135-141,142-164,171-176 50. c.13.1 CRAL/TRIO domain SpoIIaa-like core: 4 turns of a (beta-alpha)n superhelix 1oiz d1oizb2 B:100-104,111-119,128-147,152-160 1r5l d1r5la2 A:100-104,111-119,128-147,152-160 1oiz d1oiza2 A:100-104,111-119,128-147,152-160 1oip d1oipa2 A:100-104,111-119,128-147,152-160 1aua d1auaa2 A:108-116,118-127,139-158,172-180 1olm d1olma3 A:85-93,95-104,116-143,148-156 1olm d1olmc3 C:85-93,95-104,116-143,148-156 1o6u d1o6ua3 A:85-93,95-104,116-143,148-156 1o6u d1o6uc3 C:85-93,95-104,116-143,148-156 1o6u d1o6ue3 E:85-93,95-104,116-143,148-156 1olm d1olme3 E:85-93,95-104,116-143,148-156 1aua d1auaa2 A:108-116,118-127,157-167,172-180 51. c.96.1 Fe-only hydrogenase Fe-only hydrogenase consist of two intertwined domains; contains partial duplication 1hfe d1hfem1 M:332-341,342-352,352-366,371-377 1hfe d1hfel1 L:332-341,342-352,352-366,371-377 3c8y d3c8ya1 A:453-462,463-473,473-484,492-498 1feh d1feha1 A:453-462,463-473,473-484,492-498 1c4c d1c4ca1 A:453-462,463-473,473-484,492-498 1c4a d1c4aa1 A:453-462,463-473,473-484,492-498 52. e.22.1 Dehydroquinate synthase-like Dehydroquinate synthase-like 2 domains: (1) alpha/beta of a Rossmann-fold topology, binds NAD (2) multihelical array 1nva d1nvaa_ A:4-10,11-20,20-35,170-178 1nva d1nvab_ B:4-10,11-20,20-35,170-178 1dqs d1dqsb_ B:4-10,11-20,20-35,171-178 1nve d1nvec_ C:4-10,11-20,20-35,171-178 1nve d1nvea_ A:4-10,11-20,20-35,171-178 1nvf d1nvfb_ B:4-10,11-20,20-35,170-178 1nve d1nveb_ B:4-10,11-20,20-35,170-178 1nvf d1nvfa_ A:4-10,11-20,20-35,170-178 1nvf d1nvfc_ C:4-10,11-20,20-35,171-178 1nve d1nved_ D:4-10,11-20,20-35,170-178 1nvd d1nvdb_ B:4-10,11-20,20-35,171-178 1nrx d1nrxa_ A:4-10,11-20,20-35,171-178 1dqs d1dqsa_ A:4-10,11-19,20-35,171-177 1nrx d1nrxb_ B:4-10,11-20,20-35,171-178 1nvb d1nvbb_ B:4-10,11-20,20-35,170-178 1nvb d1nvba_ A:4-10,11-20,20-35,170-178 1sg6 d1sg6b_ B:4-10,11-19,24-35,170-177 1nvd d1nvda_ A:4-10,11-20,24-35,171-178 1nua d1nuab_ B:4-10,11-20,25-35,171-178 1nr5 d1nr5b_ B:4-10,11-20,24-35,171-178 1sg6 d1sg6a_ A:4-10,11-19,25-35,170-177 1nr5 d1nr5a_ A:4-10,11-20,24-35,171-178 1nua d1nuaa_ A:4-8,14-20,25-35,170-178 53. d.52.7 Ribosome-binding factor A, RbfA possible distant homologue of the type I KH domain lacking the KH motif ! Alpha-lytic protease prodomain-like core: alpha-beta(2)-(alpha)-beta; 2 layers: alpha/beta 2dyj d2dyja1 A:30-39,43-52,54-66,83-90 1pa4 d1pa4a_ A:33-42,45-53,55-82,87-92 1jos d1josa_ A:32-43,47-57,60-75,92-98 2dyj d2dyjb1 B:30-39,43-52,54-66,83-90 2r1c d2r1ca1 A:31-39,43-51,55-66,83-89 1kkg d1kkga_ A:36-45,48-57,61-76,94-102 1kkg d1kkga_ A:36-45,48-57,75-88,94-102 2dyj d2dyjb1 B:30-39,43-52,65-78,83-90 2r1c d2r1ca1 A:31-39,43-51,65-78,83-89 1jos d1josa_ A:32-43,47-57,74-87,92-98 2dyj d2dyja1 A:30-39,43-52,65-78,83-90 2e7g d2e7ga1 A:123-130,134-141,145-160,177-182 2e7g d2e7ga1 A:123-130,134-141,159-171,177-182 54. d.215.1 Smc hinge domain Smc hinge domain consists of 2 different alpha+beta subdomains; forms subdomain-swapped dimers 1gxl d1gxlb_ B:591-596,616-621,622-634,636-642 1gxj d1gxja_ A:515-519,544-549,549-564,566-574 1gxl d1gxlc_ C:591-596,616-621,622-634,636-642 1gxl d1gxld_ D:591-596,616-621,622-634,636-642 1gxl d1gxla_ A:591-596,616-621,622-634,636-642 1gxk d1gxkc_ C:515-519,544-549,549-564,567-574 1gxl d1gxlc_ C:515-519,544-549,549-564,565-574 1gxl d1gxld_ D:515-519,544-549,549-564,565-574 1gxk d1gxkd_ D:515-519,544-549,549-564,568-574 1gxl d1gxlb_ B:515-519,544-549,549-564,565-574 1gxk d1gxka_ A:591-595,617-621,622-634,636-642 1gxj d1gxjb_ B:515-519,544-549,549-564,565-574 1gxk d1gxka_ A:515-519,544-549,549-564,568-574 1gxl d1gxla_ A:515-519,544-549,549-564,565-574 1gxk d1gxkb_ B:515-519,544-549,549-564,565-574 1gxk d1gxkb_ B:591-595,617-621,622-634,636-642 1gxk d1gxkd_ D:591-595,617-621,622-634,636-642 1gxk d1gxkc_ C:591-595,617-621,622-634,636-642 1gxj d1gxjb_ B:591-595,617-621,622-634,637-642 1gxj d1gxja_ A:591-595,617-621,622-634,636-642 55. b.43.2 FucI/AraA C-terminal domain-like Reductase/isomerase/elongation factor common domain barrel, closed; n=6, S=10; greek-key 2ajt d2ajta1 A:389-400,401-413,458-470,471-477 2ajt d2ajtc1 C:389-400,401-413,458-470,471-477 2ajt d2ajtb1 B:389-400,401-413,458-470,471-477 2hxg d2hxgb1 B:389-400,401-413,458-470,472-477 2hxg d2hxga1 A:388-400,401-413,458-470,471-477 1fui d1fuid1 D:454-466,470-482,536-548,549-555 1fui d1fuie1 E:454-467,469-481,536-548,549-555 2hxg d2hxgc1 C:388-400,401-413,458-470,472-477 1fui d1fuib1 B:455-467,469-481,536-548,549-555 1fui d1fuic1 C:454-467,469-482,536-548,549-555 1fui d1fuif1 F:454-467,469-482,536-548,549-555 1fui d1fuia1 A:454-467,469-482,536-548,549-555 56. d.52.9 Cation efflux protein cytoplasmic domain-like Alpha-lytic protease prodomain-like core: alpha-beta(2)-(alpha)-beta; 2 layers: alpha/beta 2qfi d2qfia1 A:229-238,240-248,257-275,280-284 2qfi d2qfib1 B:229-238,240-248,257-275,280-284 3byp d3bypb1 B:27-39,40-51,55-75,76-86 3byp d3bypa1 A:27-39,40-51,55-75,76-86 3byr d3byra1 A:27-39,40-51,55-75,76-86 57. d.334.1 IlvD/EDD N-terminal domain-like IlvD/EDD N-terminal domain-like contains a large cluster of helices and a mixed beta-sheet of 4 strands; order 2134, strands 3 and 4 are parallel 2gp4 d2gp4a2 A:99-105,146-152,154-169,172-176 2gp4 d2gp4b2 B:99-105,146-152,156-169,172-176 58. d.117.1 Thymidylate synthase/dCMP hydroxymethylase Thymidylate synthase/dCMP hydroxymethylase contains large mixed beta-sheet 1f4g d1f4ga_ A:146-156,157-167,169-190,194-205 1bko d1bkob_ B:163-171,172-182,184-208,209-220 1f4g d1f4gb_ B:146-156,157-167,169-190,194-205 1vze d1vzea_ A:198-208,209-219,221-245,247-257 1b02 d1b02a_ A:161-171,172-182,184-208,209-220 1vzb d1vzba_ A:198-208,209-219,221-245,249-257 1njc d1njca_ A:198-208,209-219,221-245,249-257 1fwm d1fwmb_ B:448-456,457-467,469-493,494-505 1tsy d1tsya_ A:198-208,209-219,221-245,249-257 1fwm d1fwma_ A:148-156,157-167,169-193,194-205 1vzd d1vzda_ A:198-208,209-219,221-245,246-257 1bsf d1bsfb_ B:161-171,172-182,184-208,209-220 1bsf d1bsfa_ A:161-171,172-182,184-208,209-220 1jmi d1jmia_ A:198-208,209-219,221-245,246-257 1bq2 d1bq2a_ A:146-156,157-167,169-193,194-205 1nje d1njea_ A:198-208,209-219,221-245,247-257 2tdd d2tdda_ A:198-208,209-219,221-245,246-257 1bsp d1bspa_ A:161-171,172-182,184-208,209-220 1b5e d1b5ea_ A:148-158,159-169,171-199,203-214 1vza d1vzaa_ A:198-208,209-219,221-245,247-257 1njb d1njba_ A:198-208,209-219,221-245,247-257 1ddu d1ddua_ A:146-156,157-167,169-193,194-205 1b5e d1b5eb_ B:148-158,159-169,171-199,203-214 1jmh d1jmha_ A:198-208,209-219,221-245,246-257 1lca d1lcaa_ A:198-208,209-219,221-245,246-257 1zpr d1zpra_ A:146-156,157-167,169-193,194-205 1tis d1tisa_ A:156-166,167-177,179-203,204-215 1jmf d1jmfa_ A:198-208,209-219,221-245,246-257 1nja d1njaa_ A:198-208,209-219,221-245,246-257 1kce d1kceb_ B:146-156,157-167,169-193,194-205 1bsp d1bspb_ B:161-171,172-182,184-208,209-220 1tvu d1tvua_ A:198-208,209-219,221-245,247-257 1ajm d1ajma_ A:146-156,157-167,169-193,194-205 2bbq d2bbqa_ A:146-156,157-167,169-193,194-205 1tvw d1tvwa_ A:198-208,209-219,221-245,247-257 1nce d1ncea_ A:146-156,157-167,169-193,194-205 1b5d d1b5db_ B:148-158,159-169,171-199,203-214 1axw d1axwb_ B:146-156,157-167,169-193,194-205 1tsm d1tsma_ A:198-208,209-219,221-245,246-257 1bp6 d1bp6a_ A:198-208,209-219,221-245,246-257 1nce d1nceb_ B:146-156,157-167,169-193,194-205 1trg d1trga_ A:146-156,157-167,169-193,194-205 1juj d1juja_ A:195-205,206-216,218-242,243-254 1juj d1jujd_ D:195-205,206-216,218-242,243-254 1juj d1jujc_ C:195-205,206-216,218-242,243-254 1juj d1jujb_ B:195-205,206-216,218-242,243-254 2tsc d2tscb_ B:146-156,157-167,169-193,194-205 1kce d1kcea_ A:146-156,157-167,169-193,194-205 1tsl d1tsla_ A:198-208,209-219,221-245,246-257 1ffl d1ffla_ A:146-156,157-167,169-193,194-205 3tms d3tmsa_ A:146-156,157-167,169-193,194-205 1syn d1syna_ A:146-156,157-167,169-193,194-205 1b49 d1b49a_ A:148-158,159-169,171-199,203-214 1jtq d1jtqb_ B:146-156,157-167,169-193,194-205 2bbq d2bbqb_ B:146-156,157-167,169-193,194-205 1an5 d1an5a_ A:146-156,157-167,169-193,194-205 1jtu d1jtub_ B:146-156,157-167,169-193,194-205 2kce d2kcea_ A:146-156,157-167,169-193,194-205 1b49 d1b49c_ C:148-158,159-169,171-199,203-214 2tsc d2tsca_ A:146-156,157-167,169-193,194-205 1bq1 d1bq1b_ B:146-156,157-167,169-193,194-205 1aob d1aoba_ A:146-156,157-167,169-193,194-205 1tdc d1tdca_ A:198-208,209-219,221-245,247-257 2kce d2kceb_ B:146-156,157-167,169-193,194-205 1lce d1lcea_ A:198-208,209-219,221-245,246-257 1kzi d1kzia_ A:146-156,157-167,169-193,194-205 1bko d1bkod_ D:161-171,172-182,184-208,209-220 1qzf d1qzfc2 C:402-412,414-424,426-450,451-462 1tls d1tlsb_ B:146-156,157-167,169-193,194-205 1an5 d1an5b_ B:146-156,157-167,169-193,194-205 1qzf d1qzfb2 B:402-412,414-424,426-450,451-462 1syn d1synb_ B:146-156,157-167,169-193,194-205 1b5d d1b5da_ A:148-158,159-169,171-199,203-214 1tjs d1tjsa_ A:146-156,157-167,169-193,194-205 1qzf d1qzfa2 A:402-412,414-424,426-450,451-462 1qzf d1qzfd2 D:402-412,414-424,426-450,451-462 1jtq d1jtqa_ A:146-156,157-167,169-193,194-205 1zpr d1zprb_ B:146-156,157-167,169-193,194-205 1qzf d1qzfe2 E:402-412,414-424,426-450,451-462 1dna d1dnab_ B:146-156,157-167,169-193,194-205 1bq1 d1bq1a_ A:146-156,157-167,169-193,194-205 1tls d1tlsa_ A:146-156,157-167,169-193,194-205 1dna d1dnaa_ A:146-156,157-167,169-193,194-205 1tsn d1tsna_ A:146-156,157-167,169-193,194-205 1tlc d1tlcb_ B:146-156,157-167,169-193,194-205 2g8o d2g8ob1 B:146-156,157-167,169-193,194-205 1bkp d1bkpb_ B:161-171,172-182,184-208,209-220 1bid d1bida_ A:146-156,157-167,169-193,194-205 1tys d1tysa_ A:146-156,157-167,169-193,194-205 1njd d1njda_ A:198-208,209-219,221-245,246-257 1bdu d1bdua_ A:146-156,157-167,169-193,194-205 1axw d1axwa_ A:146-156,157-167,169-193,194-205 1jut d1juta_ A:146-156,157-167,169-193,194-205 1tdu d1tdua_ A:146-156,157-167,169-193,194-205 1aiq d1aiqb_ B:146-156,157-167,169-193,194-205 1jut d1jutb_ B:146-156,157-167,169-193,194-205 1kzi d1kzib_ B:146-156,157-167,169-193,194-205 2oip d2oipc2 C:402-412,414-424,426-450,451-462 1bjg d1bjga_ A:146-156,157-167,169-193,194-205 1jtu d1jtua_ A:146-156,157-167,169-193,194-205 2tdm d2tdma_ A:198-208,209-219,221-245,246-257 2tsr d2tsrd_ D:189-199,200-210,212-236,237-248 1aiq d1aiqa_ A:146-156,157-167,169-193,194-205 1bkp d1bkpa_ A:161-171,172-182,184-208,209-220 1tdb d1tdba_ A:198-208,209-219,221-245,246-257 1jmg d1jmga_ A:198-208,209-219,221-245,246-257 4tms d4tmsa_ A:198-208,209-219,221-245,246-257 2tsr d2tsrc_ C:189-199,200-210,212-236,237-248 2tsr d2tsra_ A:189-199,200-210,212-236,237-248 1f4f d1f4fb_ B:146-156,157-167,169-193,194-205 2g8o d2g8oa1 A:146-156,157-167,169-193,194-205 1kzj d1kzjd_ D:146-156,157-167,169-193,194-205 1tsz d1tsza_ A:198-208,209-219,221-245,246-257 1sej d1seja2 A:402-412,414-424,426-450,451-462 1tlc d1tlca_ A:146-156,157-167,169-193,194-205 1sej d1sejc2 C:402-412,414-424,426-450,451-462 1sej d1seje2 E:402-412,414-424,426-450,451-462 1i00 d1i00a_ A:195-205,206-216,218-242,243-254 1bo8 d1bo8a_ A:198-208,209-219,221-245,246-257 1tdu d1tdub_ B:146-156,157-167,169-193,194-205 1bpj d1bpja_ A:198-208,209-219,221-245,246-257 1tsd d1tsdb_ B:146-156,157-167,169-193,194-205 1kzj d1kzjc_ C:146-156,157-167,169-193,194-205 1sej d1sejb2 B:402-412,414-424,426-450,451-462 1tsv d1tsva_ A:198-208,209-219,221-245,247-257 1sej d1sejd2 D:402-412,414-424,426-450,451-462 1tvv d1tvva_ A:198-208,209-219,221-245,246-257 1bo7 d1bo7a_ A:198-208,209-219,221-245,246-257 1ev8 d1ev8a_ A:146-156,157-167,169-193,194-205 1hvy d1hvyb_ B:195-205,206-216,218-242,243-254 1hvy d1hvyd_ D:195-205,206-216,218-242,243-254 1kzj d1kzja_ A:146-156,157-167,169-193,194-205 1tsd d1tsda_ A:146-156,157-167,169-193,194-205 1hvy d1hvya_ A:195-205,206-216,218-242,243-254 2tsr d2tsrb_ B:189-199,200-210,212-236,237-248 1hw4 d1hw4a_ A:196-205,206-216,218-242,243-254 1kzj d1kzjf_ F:146-156,157-167,169-193,194-205 1f4f d1f4fa_ A:146-156,157-167,169-193,194-205 1bp0 d1bp0a_ A:198-208,209-219,221-245,246-257 1tsw d1tswa_ A:198-208,209-219,221-245,246-257 1tsx d1tsxa_ A:198-208,209-219,221-245,246-257 1hzw d1hzwa_ A:195-205,206-216,218-242,243-254 1ddu d1ddub_ B:146-156,157-167,169-193,194-205 1f4d d1f4db_ B:146-156,157-167,169-193,194-205 1thy d1thya_ A:198-208,209-219,221-245,246-257 1hvy d1hvyc_ C:195-205,206-216,218-242,243-254 1qqq d1qqqa_ A:146-156,157-167,169-193,194-205 1f4c d1f4cb_ B:146-156,157-167,169-193,194-205 1j3j d1j3jd_ D:490-500,501-511,513-537,538-549 2a9w d2a9wd1 D:146-156,157-167,169-193,194-205 1rts d1rtsb_ B:189-199,200-210,212-236,237-248 1evf d1evfa_ A:146-156,157-167,169-193,194-205 1f4c d1f4ca_ A:146-156,157-167,169-193,194-205 1rts d1rtsa_ A:189-199,200-210,212-236,237-248 1f4b d1f4ba_ A:146-156,157-167,169-193,194-205 2a9w d2a9wb1 B:146-156,157-167,169-193,194-205 1ju6 d1ju6d_ D:195-205,206-216,218-242,243-254 1kzj d1kzje_ E:146-156,157-167,169-193,194-205 1tda d1tdaa_ A:198-208,209-219,221-245,246-257 1ju6 d1ju6a_ A:195-205,206-216,218-242,243-254 1ju6 d1ju6b_ B:195-205,206-216,218-242,243-254 1ju6 d1ju6c_ C:195-205,206-216,218-242,243-254 1j3i d1j3id_ D:490-500,501-511,513-537,538-549 1f4d d1f4da_ A:146-156,157-167,169-193,194-205 1hzw d1hzwb_ B:195-205,206-216,218-242,243-254 1hw3 d1hw3a_ A:196-205,206-216,218-242,243-254 1ev5 d1ev5a_ A:146-156,157-167,169-193,194-205 2a9w d2a9wa1 A:146-156,157-167,169-193,194-205 1bko d1bkoc_ C:161-171,172-182,184-208,209-220 1kzj d1kzjb_ B:146-156,157-167,169-193,194-205 2ftq d2ftqa1 A:146-156,157-167,169-193,194-205 1jg0 d1jg0a_ A:146-156,157-167,169-193,194-205 2a9w d2a9wc1 C:146-156,157-167,169-193,194-205 1f4e d1f4ea_ A:146-156,157-167,169-193,194-205 1i00 d1i00b_ B:195-205,206-216,218-242,243-254 1bko d1bkoa_ A:161-171,172-182,184-208,209-220 2oip d2oipe2 E:402-412,414-424,426-450,451-462 1j3i d1j3ic_ C:490-500,501-511,513-537,538-549 1j3j d1j3jc_ C:490-500,501-511,513-537,538-549 1ci7 d1ci7a_ A:173-183,190-200,202-226,227-238 2oip d2oipb2 B:402-412,414-424,426-450,451-462 1j3k d1j3kc_ C:490-500,501-511,513-537,538-549 2oip d2oipd2 D:402-412,414-424,426-450,451-462 1ci7 d1ci7b_ B:173-183,190-200,202-226,227-238 2oip d2oipa2 A:402-412,414-424,426-450,451-462 1jg0 d1jg0b_ B:146-156,157-167,169-193,194-205 1vzc d1vzca_ A:198-208,209-219,221-245,247-257 1evg d1evga_ A:146-156,157-167,169-193,194-205 1j3k d1j3kd_ D:490-500,501-511,513-537,538-549 1lcb d1lcba_ A:198-208,209-219,221-245,246-257 1f28 d1f28b_ B:173-186,187-200,202-226,227-238 1f28 d1f28d_ D:173-186,187-200,202-226,227-238 1f28 d1f28a_ A:173-186,187-200,202-226,227-238 1f28 d1f28c_ C:173-186,187-200,202-226,227-238 59. c.79.1 Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes consists of two similar domains related by pseudo dyad; duplication ! core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214 1kl7 d1kl7a_ A:97-102,109-116,243-263,442-450 1kl7 d1kl7b_ B:97-102,109-116,243-263,442-450 1v8z d1v8za1 A:51-56,66-73,200-216,364-371 1vb3 d1vb3a1 A:84-90,92-99,215-234,369-377 1wdw d1wdwh1 H:52-56,66-73,200-216,364-371 1wdw d1wdwf1 F:52-56,66-73,200-216,364-371 1wdw d1wdwj1 J:52-56,66-74,200-216,364-372 1wdw d1wdwl1 L:52-56,66-74,200-216,364-372 1wdw d1wdwb1 B:52-56,66-74,200-216,364-372 1wdw d1wdwd1 D:52-56,66-74,200-216,364-372 1kfk d1kfkb_ B:57-62,70-78,205-221,369-377 1tjp d1tjpb1 B:57-62,70-78,205-221,369-377 1qop d1qopb_ B:57-62,70-78,205-221,369-377 1a5b d1a5bb_ B:57-62,70-78,205-221,369-377 3cep d3cepb1 B:57-62,70-78,205-221,369-377 2trs d2trsb_ B:57-62,70-79,205-221,369-378 1c29 d1c29b_ B:57-62,70-79,205-221,369-378 1v8z d1v8zc1 C:52-56,66-73,200-216,364-371 2rhg d2rhgb1 B:57-62,70-79,205-221,369-378 1v8z d1v8zb1 B:52-56,66-74,200-216,364-372 1cx9 d1cx9b_ B:57-62,70-79,205-221,369-378 1a5a d1a5ab_ B:57-62,70-78,205-221,369-377 1kfe d1kfeb_ B:57-62,70-79,205-221,369-378 1v8z d1v8zd1 D:52-56,66-73,200-216,364-371 2rh9 d2rh9b1 B:57-62,70-79,205-221,369-378 1k3u d1k3ub_ B:57-62,70-79,205-221,369-378 1kfc d1kfcb_ B:57-62,70-79,205-221,369-378 2clm d2clmb1 B:57-62,70-79,205-221,369-378 1c9d d1c9db_ B:57-62,70-79,205-221,369-378 2clf d2clfb1 B:57-62,70-79,205-221,369-378 2cll d2cllb1 B:57-62,70-79,205-221,369-378 1a50 d1a50b_ B:57-62,70-79,205-221,369-378 1k8z d1k8zb_ B:57-62,70-79,205-221,369-378 1beu d1beub_ B:57-62,70-79,205-221,369-378 1a5s d1a5sb_ B:57-62,70-79,205-221,369-378 2wsy d2wsyb_ B:57-62,70-78,205-221,369-377 1bks d1bksb_ B:57-62,70-79,205-221,369-378 1k7x d1k7xb_ B:57-62,70-79,205-221,369-380 2clh d2clhb1 B:57-62,70-79,205-221,369-380 2cli d2clib1 B:57-62,70-79,205-221,369-380 1wbj d1wbjb1 B:58-62,70-78,205-221,369-377 2clk d2clkb1 B:58-62,70-78,205-221,369-377 2cle d2cleb1 B:57-62,70-79,205-221,369-380 2j9x d2j9xb1 B:57-62,70-79,205-221,369-380 1e5x d1e5xb_ B:131-136,148-155,263-283,426-433 1e5x d1e5xa_ A:131-136,148-155,263-283,426-433 1ttp d1ttpb_ B:57-62,70-79,205-221,369-378 1k8x d1k8xb_ B:58-62,70-78,205-221,369-377 1pwh d1pwha_ A:11-16,26-33,138-157,297-304 1pwh d1pwhd_ D:11-16,26-33,138-157,297-304 1pwh d1pwhb_ B:11-16,26-33,138-157,297-304 1kfj d1kfjb_ B:58-62,70-79,205-221,369-378 2tsy d2tsyb_ B:58-62,70-79,205-221,369-378 1k7e d1k7eb_ B:58-62,70-79,205-221,369-378 1pwe d1pweb_ B:11-16,26-33,138-157,297-304 2tys d2tysb_ B:58-62,70-78,205-221,369-377 1pwe d1pwec_ C:11-16,26-33,138-157,297-304 1pwe d1pwea_ A:11-16,26-33,138-157,297-304 1pwe d1pwee_ E:11-16,26-33,138-157,297-304 1pwe d1pwed_ D:11-16,26-33,138-157,297-304 1c8v d1c8vb_ B:58-62,70-79,205-221,369-378 1ttq d1ttqb_ B:58-62,70-79,205-221,369-378 1k8y d1k8yb_ B:58-62,70-79,205-221,369-378 1pwe d1pwef_ F:11-16,26-33,138-157,297-304 2clo d2clob1 B:58-62,70-79,205-221,369-378 1ubs d1ubsb_ B:58-62,70-79,205-221,369-378 1kfb d1kfbb_ B:58-62,70-79,205-221,369-378 1qoq d1qoqb_ B:58-62,70-79,205-221,369-378 1cw2 d1cw2b_ B:58-62,70-79,205-221,369-378 1k7f d1k7fb_ B:58-62,70-79,205-221,369-380 1fuy d1fuyb_ B:58-62,70-79,205-221,369-378 1kfe d1kfeb_ B:57-62,70-79,234-245,369-378 1v8z d1v8za1 A:51-56,66-73,229-240,364-371 1kfc d1kfcb_ B:57-62,70-79,234-245,369-378 1k3u d1k3ub_ B:57-62,70-79,234-245,369-378 2rh9 d2rh9b1 B:57-62,70-79,234-245,369-378 2cll d2cllb1 B:57-62,70-79,234-245,369-378 1c29 d1c29b_ B:57-62,70-79,234-245,369-378 2clm d2clmb1 B:57-62,70-79,234-245,369-378 1cx9 d1cx9b_ B:57-62,70-79,234-245,369-378 2rhg d2rhgb1 B:57-62,70-79,234-245,369-378 2clf d2clfb1 B:57-62,70-79,234-245,369-378 1a5s d1a5sb_ B:57-62,70-79,234-245,369-378 1o58 d1o58c_ C:10-14,20-27,135-155,275-282 1o58 d1o58b_ B:10-14,20-27,135-155,275-282 1beu d1beub_ B:57-62,70-79,234-245,369-378 1o58 d1o58d_ D:10-14,20-27,135-155,275-282 1qop d1qopb_ B:57-62,70-78,234-245,369-377 2trs d2trsb_ B:57-62,70-79,234-245,369-378 1v8z d1v8zb1 B:52-56,66-74,229-240,364-372 2j9x d2j9xb1 B:57-62,70-79,234-245,369-380 1j0c d1j0ca_ A:16-21,32-40,170-190,316-324 1wdw d1wdwj1 J:52-56,66-74,229-240,364-372 1wdw d1wdwb1 B:52-56,66-74,229-240,364-372 1o58 d1o58a_ A:10-14,20-27,135-155,275-282 1a50 d1a50b_ B:57-62,70-79,234-245,369-378 1wdw d1wdwl1 L:52-56,66-74,229-240,364-372 1tjp d1tjpb1 B:57-62,70-78,234-245,369-377 1bks d1bksb_ B:57-62,70-79,234-245,369-378 1wdw d1wdwd1 D:52-56,66-74,229-240,364-372 2clh d2clhb1 B:57-62,70-79,234-245,369-380 1fcj d1fcjd_ D:15-19,26-33,145-165,293-300 1fcj d1fcjc_ C:15-19,26-33,145-165,293-300 1p5j d1p5ja_ A:11-16,26-33,138-156,297-304 1fcj d1fcjb_ B:15-19,26-33,145-165,293-300 1fcj d1fcja_ A:15-19,26-33,145-165,293-300 1d6s d1d6sb_ B:15-19,26-33,145-165,293-300 2cli d2clib1 B:57-62,70-79,234-245,369-380 1kfk d1kfkb_ B:57-62,70-78,234-245,369-377 2cle d2cleb1 B:57-62,70-79,234-245,369-380 1oas d1oasb_ B:15-19,26-33,145-165,293-300 1oas d1oasa_ A:15-19,26-33,145-165,293-300 1a5b d1a5bb_ B:57-62,70-78,234-245,369-377 1d6s d1d6sa_ A:15-19,26-33,145-165,293-300 1wdw d1wdwf1 F:52-56,66-73,229-240,364-371 1k7x d1k7xb_ B:57-62,70-79,234-245,369-380 1wdw d1wdwh1 H:52-56,66-73,229-240,364-371 1a5a d1a5ab_ B:57-62,70-78,234-245,369-377 1v8z d1v8zd1 D:52-56,66-73,229-240,364-371 1v8z d1v8zc1 C:52-56,66-73,229-240,364-371 1y7l d1y7la1 A:15-19,27-34,146-166,293-300 1m54 d1m54a_ A:87-92,103-111,225-245,368-376 1kfb d1kfbb_ B:58-62,70-79,234-245,369-378 1k8y d1k8yb_ B:58-62,70-79,234-245,369-378 1qoq d1qoqb_ B:58-62,70-79,234-245,369-378 1ubs d1ubsb_ B:58-62,70-79,234-245,369-378 1cw2 d1cw2b_ B:58-62,70-79,234-245,369-378 1fuy d1fuyb_ B:58-62,70-79,234-245,369-378 2tsy d2tsyb_ B:58-62,70-79,234-245,369-378 1pwh d1pwhc_ C:11-16,26-33,138-156,297-304 1c8v d1c8vb_ B:58-62,70-79,234-245,369-378 1m54 d1m54f_ F:87-92,103-111,225-245,368-376 1m54 d1m54e_ E:87-92,103-111,225-245,368-376 1m54 d1m54c_ C:87-92,103-111,225-245,368-376 1m54 d1m54b_ B:88-92,103-111,225-245,368-376 1c9d d1c9db_ B:57-62,70-79,234-242,369-378 1m54 d1m54d_ D:87-92,103-111,225-245,368-376 1k7e d1k7eb_ B:58-62,70-79,234-242,369-378 3cep d3cepb1 B:57-62,70-78,234-242,369-377 1k8z d1k8zb_ B:57-62,70-79,234-242,369-378 1ttp d1ttpb_ B:57-62,70-79,234-242,369-378 1kfj d1kfjb_ B:58-62,70-79,234-242,369-378 2clo d2clob1 B:58-62,70-79,234-242,369-378 1k7f d1k7fb_ B:58-62,70-79,234-242,369-380 1ve1 d1ve1a1 A:11-15,24-32,144-164,282-290 2eco d2ecoa1 A:11-15,24-32,144-164,282-290 1jbq d1jbqf_ F:88-92,103-111,225-245,368-376 1jbq d1jbqb_ B:88-92,103-111,225-245,368-376 1jbq d1jbqa_ A:88-92,103-111,225-245,368-376 1jbq d1jbqe_ E:88-92,103-111,225-245,368-376 1jbq d1jbqd_ D:88-92,103-111,225-245,368-376 1ttq d1ttqb_ B:58-62,70-79,234-242,369-378 1jbq d1jbqc_ C:88-92,103-111,225-245,368-376 2efy d2efya1 A:11-15,24-32,144-164,282-292 1z7y d1z7ya1 A:17-21,30-38,150-170,289-297 2efy d2efyb1 B:11-15,24-32,144-164,282-292 2ecq d2ecqa1 A:11-15,24-32,144-164,282-292 1j0a d1j0ab_ B:22-27,36-44,160-179,301-309 1j0a d1j0aa_ A:22-27,36-44,160-179,301-309 1j0b d1j0bg_ G:22-27,36-44,160-179,301-309 2wsy d2wsyb_ B:57-62,70-78,234-242,369-377 1j0b d1j0ba_ A:22-27,36-44,160-179,301-309 1j0c d1j0cc_ C:16-21,31-40,170-190,314-324 1j0d d1j0dc_ C:16-21,31-40,170-190,314-324 1j0b d1j0bc_ C:22-27,36-43,160-179,301-308 1j0b d1j0bd_ D:23-27,36-44,160-179,301-309 1j0e d1j0ec_ C:16-21,31-40,170-190,314-324 1j0d d1j0dd_ D:16-21,31-40,170-190,314-324 1j0b d1j0bs_ S:22-27,36-43,160-179,301-309 1j0b d1j0bj_ J:22-27,36-44,160-179,301-309 1j0c d1j0cd_ D:16-21,31-40,170-190,314-324 1j0e d1j0ea_ A:16-21,31-40,168-190,314-324 1j0b d1j0bm_ M:23-27,36-44,160-179,301-309 1j0b d1j0bk_ K:23-27,36-43,160-179,301-308 1j0d d1j0da_ A:16-21,31-40,168-190,314-324 1j0e d1j0ed_ D:16-21,31-40,170-190,314-324 1j0b d1j0bu_ U:23-27,36-44,160-179,301-309 1j0b d1j0bq_ Q:23-27,36-43,160-179,301-308 1wkv d1wkvb1 B:98-102,109-118,227-250,360-369 1f2d d1f2da_ A:16-21,31-40,168-190,314-324 1j0b d1j0bo_ O:23-27,36-44,160-179,301-309 1wkv d1wkva1 A:98-102,109-118,227-250,360-369 1f2d d1f2dc_ C:16-21,31-40,168-190,314-324 1j0e d1j0eb_ B:16-21,31-40,168-190,314-324 1f2d d1f2dd_ D:16-21,31-40,168-190,314-324 1j0d d1j0db_ B:16-21,31-40,168-190,314-324 1f2d d1f2db_ B:16-21,31-40,168-190,314-324 2bht d2bhta1 A:11-16,24-33,143-163,271-281 1j0b d1j0bb_ B:22-27,36-44,160-178,301-309 1j0b d1j0be_ E:22-27,36-44,160-178,301-309 1tzk d1tzka_ A:16-21,31-40,165-187,313-323 1tdj d1tdja1 A:32-37,45-54,159-178,307-316 1j0b d1j0bt_ T:22-27,36-44,160-178,301-309 1tzm d1tzma_ A:17-21,31-40,165-187,313-323 1j0b d1j0bp_ P:22-27,36-44,160-178,301-309 1tzj d1tzja_ A:16-21,31-40,165-187,313-323 1tz2 d1tz2c_ C:16-21,31-40,165-187,313-323 1rqx d1rqxa_ A:16-21,31-40,165-187,313-323 1j0b d1j0bh_ H:22-27,36-43,160-178,301-308 1tzj d1tzjc_ C:16-21,31-40,165-187,313-323 1rqx d1rqxd_ D:16-21,31-40,165-187,313-323 1uin d1uinb_ B:30-34,44-53,157-176,309-318 1tzk d1tzkd_ D:16-21,31-40,165-187,313-323 1j0b d1j0br_ R:23-27,36-43,160-178,301-308 1j0b d1j0bf_ F:22-27,36-44,160-178,301-309 1tyz d1tyza_ A:17-21,31-40,165-187,313-323 1tzj d1tzjd_ D:16-21,31-40,165-187,313-323 1tz2 d1tz2a_ A:17-21,31-40,165-187,313-323 1z7w d1z7wa1 A:17-21,29-38,150-170,287-297 1tzj d1tzjb_ B:17-21,31-40,165-187,313-323 1j0b d1j0bv_ V:23-27,36-44,160-178,301-309 1uim d1uimb_ B:30-34,44-53,157-176,309-318 1j0b d1j0bx_ X:23-27,36-44,160-178,301-309 1uin d1uina_ A:30-34,44-53,157-176,309-318 1j0a d1j0ac_ C:23-27,36-44,160-178,301-309 1tyz d1tyzb_ B:17-21,31-40,165-187,313-323 1tyz d1tyzc_ C:17-21,31-40,165-187,313-323 1tzk d1tzkb_ B:17-21,31-40,165-187,313-323 1tzm d1tzmb_ B:17-21,31-40,165-187,313-323 2bht d2bhtd1 D:11-16,24-33,143-163,271-283 1tz2 d1tz2b_ B:17-21,31-40,165-187,313-323 1j0b d1j0bw_ W:23-27,36-44,160-178,301-309 1tzm d1tzmc_ C:17-21,31-40,165-187,313-323 1tz2 d1tz2d_ D:17-21,31-40,165-187,313-323 1v7c d1v7cb_ B:30-34,44-53,157-176,309-318 1rqx d1rqxc_ C:17-21,31-40,165-187,313-323 1v7c d1v7cd_ D:30-34,44-53,157-176,309-318 1v7c d1v7cc_ C:30-34,44-53,157-176,309-318 1j0b d1j0bn_ N:23-27,36-44,160-178,301-309 2bhs d2bhsc1 C:11-16,23-33,143-163,271-281 1rqx d1rqxb_ B:17-21,31-40,165-187,313-323 1tyz d1tyzd_ D:17-21,31-40,165-187,313-323 2bht d2bhtc1 C:11-16,23-33,143-163,271-281 1tzm d1tzmd_ D:17-21,31-40,165-187,313-323 1v7c d1v7ca_ A:30-34,44-53,157-176,309-318 1j0b d1j0bl_ L:23-27,36-43,160-178,301-308 2bhs d2bhsd1 D:11-16,23-33,143-163,271-281 2bhs d2bhsa1 A:12-16,23-33,143-163,271-281 1j0b d1j0bi_ I:23-27,36-44,160-178,301-309 2bhs d2bhsb1 B:11-16,23-33,143-163,271-283 1tzk d1tzkc_ C:17-21,31-40,165-185,313-323 2bht d2bhtb1 B:11-16,23-33,143-163,271-283 1uim d1uima_ A:30-34,43-53,157-176,308-318 60. c.141.1 Glycerate kinase I Glycerate kinase I consists of two different alpha/beta domains; (1) of the Flavodoxin-like fold (scop_cf 52171); (2) similar to the Restriction endonuclease-like fold (scop_cf 52979), inserted into domain 1 1to6 d1to6a_ A:70-81,82-88,108-123,125-131 1to6 d1to6b_ B:70-81,82-88,108-123,125-131 61. e.69.1 Poly(A) polymerase catalytic subunit-like Central domain d2 is distantly related to the nucleotidyltransferase superfamily (scop_sf 81301) Poly(A) polymerase catalytic subunit-like 3 domains; d1: all-alpha, contains HhH motif; d2: alpha+beta of nucleotidyltransferase fold (scop_cf 81302); d3: [alpha+beta; beta(3)-alpha-beta(3)-alpha(2); 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 123654, strands 2 and 5 are antiparallel to the rest 2ga9 d2ga9d1 D:341-348,355-361,362-374,394-400 2gaf d2gafd1 D:341-348,355-361,362-374,394-400 2ga9 d2ga9d1 D:182-186,204-208,209-226,248-257 2gaf d2gafd1 D:182-186,204-208,209-226,248-257 65. c.97.3 JAB1/MPN domain Cytidine deaminase-like core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest 1oi0 d1oi0d_ D:25-34,63-73,80-91,92-99 1oi0 d1oi0a_ A:25-34,63-73,80-91,92-99 1r5x d1r5xb_ B:22-31,62-70,77-88,89-96 1r5x d1r5xa_ A:22-31,63-70,77-88,89-96 1oi0 d1oi0b_ B:25-34,64-73,80-91,92-99 1oi0 d1oi0c_ C:25-34,64-73,80-91,92-99 66. e.25.1 Sec1/munc18-like (SM) proteins Sec1/munc18-like (SM) proteins 3 domains: (1 and 2) alpha+beta; (3) mostly alpha, inserted in domain 2 1fvf d1fvfb_ B:134-138,140-145,158-181,566-574 1fvf d1fvfa_ A:134-138,140-145,158-181,566-574 1fvh d1fvha_ A:134-138,140-145,158-181,565-574 1epu d1epua_ A:134-138,140-145,158-181,565-573 1mqs d1mqsa_ A:163-167,169-174,188-211,634-641 1epu d1epua_ A:134-138,140-145,158-181,572-576 68. b.170.1 WSSV envelope protein-like WSSV envelope protein-like beta-sandwich; 9 strands in 2 sheets; greek-key 2ed6 d2ed6j1 J:69-74,78-84,87-95,97-103 2ed6 d2ed6f1 F:69-74,78-84,87-95,97-103 2ed6 d2ed6i1 I:69-74,78-84,87-95,97-103 2ed6 d2ed6e1 E:69-74,78-84,87-95,97-103 2ed6 d2ed6a1 A:69-74,78-84,87-95,97-103 2ed6 d2ed6l1 L:69-74,78-84,87-95,97-103 2edm d2edma1 A:66-72,73-81,83-91,93-99 2ed6 d2ed6b1 B:69-74,78-83,87-95,97-103 2ed6 d2ed6c1 C:69-74,78-83,87-95,97-103 2ed6 d2ed6d1 D:69-74,78-83,87-95,97-103 2ed6 d2ed6h1 H:69-74,78-83,87-95,97-103 2ed6 d2ed6g1 G:69-74,78-83,87-95,97-103 2ed6 d2ed6k1 K:69-74,78-83,87-94,97-103 70. d.52.5 Probable GTPase Der, C-terminal domain possible distant relative of the Era C-terminal domain lacking the KH motif ! Alpha-lytic protease prodomain-like core: alpha-beta(2)-(alpha)-beta; 2 layers: alpha/beta 1mky d1mkya3 A:382-392,395-403,408-425,431-438 72. d.21.1 Diaminopimelate epimerase-like duplication: consists of two similar domain swapped with C-terminal strands ! Diaminopimelate epimerase-like mixed beta-sheet folds into a barrel (n=8, S=14) around the central helix 1qy9 d1qy9c1 C:3-11,18-26,31-43,46-52 2q9j d2q9ja2 A:145-155,157-164,171-182,189-197 1tm0 d1tm0a_ A:222-234,235-243,254-270,276-282 2q9h d2q9ha2 A:145-155,157-164,171-182,189-197 1u0k d1u0ka1 A:3-11,18-26,31-43,46-52 2h9f d2h9fa2 A:206-216,218-224,242-261,276-284 1qy9 d1qy9a1 A:3-11,18-26,31-43,46-53 2gkj d2gkja2 A:145-155,157-164,171-182,189-197 2gke d2gkea2 A:145-155,157-164,171-182,189-197 1bwz d1bwza2 A:145-155,157-164,171-182,189-197 1sdj d1sdja1 A:3-11,18-27,31-43,46-52 1gqz d1gqza2 A:145-155,157-164,171-182,189-197 1qy9 d1qy9d1 D:3-11,18-27,31-43,46-52 1qya d1qyab1 B:3-11,18-26,31-43,46-53 2gke d2gkea1 A:1-9,10-19,26-36,43-51 1qya d1qyaa1 A:3-11,18-26,31-43,46-53 2gkj d2gkja1 A:1-9,10-19,26-36,43-51 1u0k d1u0kb2 B:155-160,162-170,182-191,193-201 1u0k d1u0ka2 A:193-201,202-207,219-234,241-247 2q9h d2q9ha2 A:189-197,200-209,217-232,236-243 1gqz d1gqza2 A:189-197,200-209,217-232,236-243 2gke d2gkea2 A:189-197,200-209,217-232,236-243 1u0k d1u0ka2 A:155-160,162-170,182-191,193-201 1qy9 d1qy9b1 B:3-11,18-27,31-43,46-53 2gkj d2gkja2 A:189-197,200-209,217-232,236-243 2q9j d2q9ja2 A:189-197,200-209,217-232,236-243 1tm0 d1tm0b_ B:222-234,235-243,255-270,275-282 1tm0 d1tm0a_ A:162-170,172-179,187-204,222-234 1u0k d1u0kb2 B:193-201,202-207,219-234,241-247 1tm0 d1tm0b_ B:162-170,172-179,187-204,222-234 1bwz d1bwza2 A:189-197,200-209,217-232,236-243 2q9h d2q9ha1 A:1-9,10-18,26-36,43-50 1u0k d1u0kb1 B:2-11,18-26,31-43,46-53 1bwz d1bwza1 A:1-9,10-18,26-36,43-50 2q9j d2q9ja1 A:1-9,10-18,26-36,43-51 1gqz d1gqza1 A:1-9,10-18,26-36,43-51 2h9f d2h9fa1 A:6-17,18-26,37-49,69-77 1s7j d1s7jb_ B:137-143,144-150,162-169,173-181 1s7j d1s7ja_ A:137-143,144-150,162-169,173-181 1qya d1qyab2 B:154-160,161-169,180-192,195-202 1u1x d1u1xa2 A:182-191,192-201,211-226,233-239 1s7j d1s7jb_ B:46-54,55-64,71-87,91-98 1s7j d1s7ja_ A:46-54,55-64,71-87,91-98 1sdj d1sdja2 A:154-159,161-169,180-192,195-202 1t6k d1t6ka2 A:182-191,192-201,211-226,233-239 1u1w d1u1wa2 A:182-191,192-201,211-226,233-239 1qy9 d1qy9c2 C:154-160,161-169,180-192,195-202 1u1x d1u1xb2 B:182-191,192-201,211-226,233-239 1tm0 d1tm0a_ A:3-15,16-25,44-54,61-68 1tm0 d1tm0b_ B:3-15,16-25,44-54,61-68 1qy9 d1qy9d2 D:154-160,161-169,180-192,195-202 1u1w d1u1wb2 B:182-191,192-201,211-226,233-239 1qya d1qyaa2 A:154-160,161-169,180-192,195-202 1qy9 d1qy9b2 B:154-160,161-169,180-192,195-202 1qy9 d1qy9a2 A:154-160,161-169,180-192,195-202 1xua d1xuaa2 A:182-191,192-201,211-226,233-239 1xub d1xuba2 A:182-191,192-202,211-226,233-239 1s7j d1s7jb_ B:137-143,144-150,152-159,173-181 1xua d1xuab2 B:182-191,192-201,211-226,233-239 1s7j d1s7ja_ A:137-143,144-150,152-159,173-181 1u1v d1u1va2 A:182-191,192-202,211-226,233-239 1u1w d1u1wb1 B:0-10,17-24,30-42,44-52 1s7j d1s7jb_ B:173-181,185-193,203-219,221-229 1s7j d1s7ja_ A:173-181,185-193,203-219,221-229 1u1x d1u1xa1 A:45-52,57-65,72-84,90-97 1u1w d1u1wa1 A:45-52,57-65,72-84,90-97 1xua d1xuaa1 A:45-52,57-65,72-84,90-97 1t6k d1t6ka1 A:45-52,57-65,72-84,90-97 1bwz d1bwza1 A:43-50,57-65,76-88,93-100 1xub d1xuba1 A:45-52,57-65,72-84,90-97 2q9h d2q9ha1 A:43-50,57-65,76-88,93-100 2h9f d2h9fa2 A:276-284,301-309,317-331,345-352 2q9j d2q9ja1 A:43-51,57-65,76-88,93-100 1gqz d1gqza1 A:43-51,57-65,76-88,93-100 1u1v d1u1va1 A:45-52,57-65,72-87,90-97 1u1w d1u1wb1 B:44-52,57-65,72-84,90-97 1u1x d1u1xb1 B:44-52,57-65,72-84,90-96 1u1x d1u1xb1 B:0-10,16-24,30-42,44-52 1xua d1xuab1 B:44-52,57-65,72-84,90-97 2gkj d2gkja1 A:43-51,57-65,73-88,93-100 1xua d1xuab1 B:0-10,16-24,30-42,44-52 2gke d2gkea1 A:43-51,57-65,73-88,93-100 1u1x d1u1xa1 A:1-10,16-24,30-42,45-52 1u1w d1u1wa1 A:1-10,16-24,30-42,45-52 1xua d1xuaa1 A:1-10,16-24,30-42,45-52 2h9f d2h9fa2 A:276-284,301-309,333-340,345-352 1u1v d1u1va1 A:1-10,16-24,30-42,45-52 1xub d1xuba1 A:1-10,16-24,30-42,45-52 1sdj d1sdja2 A:195-202,206-214,225-240,247-256 1s7j d1s7ja_ A:1-11,17-26,31-43,46-54 1t6k d1t6ka1 A:1-10,16-24,30-42,45-52 1s7j d1s7jb_ B:1-11,17-26,31-43,46-54 1u1x d1u1xa2 A:146-151,153-160,172-180,182-191 1xub d1xuba2 A:146-151,153-160,172-180,182-191 1u1w d1u1wa2 A:146-151,153-160,172-180,182-191 1xua d1xuaa2 A:146-151,153-160,172-180,182-191 1u1w d1u1wb2 B:146-151,153-160,172-180,182-191 1u1v d1u1va2 A:146-151,153-160,172-180,182-191 1t6k d1t6ka2 A:146-151,153-160,172-180,182-191 1u1x d1u1xb2 B:146-151,153-160,172-180,182-191 1xua d1xuab2 B:146-151,153-160,172-180,182-191 1tm0 d1tm0a_ A:61-68,75-83,90-105,112-121 1tm0 d1tm0b_ B:61-68,75-83,90-105,112-121 1u0k d1u0kb1 B:46-53,57-66,74-89,93-101 1sdj d1sdja1 A:46-52,57-65,72-88,90-99 1qy9 d1qy9c1 C:46-52,57-65,72-88,90-99 1qya d1qyab1 B:46-53,57-65,72-88,90-99 1qy9 d1qy9b1 B:46-53,57-65,72-88,90-99 1qy9 d1qy9d1 D:46-52,57-65,72-88,90-99 1qy9 d1qy9a1 A:46-53,57-65,72-88,90-99 1qya d1qyaa1 A:46-53,57-65,74-88,90-98 2h9f d2h9fa1 A:69-77,83-92,104-119,128-140 1u0k d1u0ka1 A:46-52,57-66,74-89,93-101 1qya d1qyab2 B:195-202,206-215,225-240,247-256 1qy9 d1qy9c2 C:195-202,206-215,225-240,247-256 1qy9 d1qy9b2 B:195-202,206-215,225-240,247-256 1qy9 d1qy9a2 A:195-202,206-215,225-240,247-256 1qy9 d1qy9d2 D:195-202,206-215,225-240,247-256 1qya d1qyaa2 A:195-202,206-215,225-240,247-256 73. d.160.1 Carbon-nitrogen hydrolase Carbon-nitrogen hydrolase 4 layers: alpha/beta/beta/alpha; mixed beta sheets; contains duplication 1f89 d1f89a_ A:155-160,161-169,174-185,186-193 1f89 d1f89b_ B:455-460,461-469,474-485,486-494 1j31 d1j31b_ B:132-137,138-146,151-162,164-171 1j31 d1j31d_ D:132-137,138-146,151-162,164-171 1j31 d1j31a_ A:132-137,138-146,151-162,164-171 1j31 d1j31c_ C:132-137,138-146,151-162,164-171 2ggl d2gglc1 C:159-163,164-172,177-188,190-197 2ggl d2ggla1 A:159-163,164-172,177-188,190-197 2ggk d2ggkc1 C:159-163,164-172,177-188,190-197 2ggk d2ggka1 A:159-163,164-172,177-188,190-197 2ggl d2ggld1 D:159-163,164-172,177-188,190-197 2ggl d2gglb1 B:159-163,164-172,177-188,190-197 1fo6 d1fo6d_ D:159-163,164-172,177-188,190-197 2ggk d2ggkd1 D:159-163,164-172,177-188,190-197 1fo6 d1fo6b_ B:159-163,164-172,177-188,190-197 1fo6 d1fo6c_ C:159-163,164-172,177-188,190-197 2ggk d2ggkb1 B:159-163,164-172,177-188,190-197 1fo6 d1fo6a_ A:159-163,164-172,177-188,190-197 1erz d1erza_ A:158-162,163-171,176-187,189-196 1erz d1erzb_ B:158-162,163-171,176-187,189-196 1uf4 d1uf4a_ A:158-162,163-171,176-187,189-196 1uf7 d1uf7a_ A:158-162,163-171,176-187,189-196 1uf8 d1uf8a_ A:158-162,163-171,176-187,189-196 1uf5 d1uf5a_ A:158-162,163-171,176-187,189-196 1uf5 d1uf5b_ B:158-162,163-171,176-187,189-196 1uf8 d1uf8b_ B:158-162,163-171,176-187,189-196 1uf4 d1uf4b_ B:158-162,163-171,176-187,189-196 1uf7 d1uf7b_ B:158-162,163-171,176-187,189-196 74. a.104.1 Cytochrome P450 Cytochrome P450 multihelical 1cpt d1cpta_ A:39-44,50-55,56-67,334-341 1lfk d1lfka_ A:27-32,41-46,47-58,304-311 1ue8 d1ue8a_ A:13-18,19-24,25-36,274-281 1ued d1uedb_ B:38-44,54-59,60-71,313-320 1lgf d1lgfa_ A:27-32,41-46,47-58,304-311 1ued d1ueda_ A:38-44,54-59,60-71,313-320 1f4u d1f4ub_ B:13-18,19-24,25-36,274-281 1f4u d1f4ua_ A:13-18,19-24,25-36,274-281 1io9 d1io9b_ B:513-518,519-524,525-536,774-781 1f4t d1f4ta_ A:13-18,19-24,25-36,274-281 1io7 d1io7b_ B:513-518,519-524,525-536,774-781 1io9 d1io9a_ A:13-18,19-24,25-36,274-281 1wiy d1wiyb_ B:32-38,41-47,48-58,288-295 1f4t d1f4tb_ B:13-18,19-24,25-36,274-281 1io7 d1io7a_ A:13-18,19-24,25-36,274-281 1io8 d1io8b_ B:513-518,519-524,525-536,774-781 1wiy d1wiya_ A:32-37,42-47,48-58,288-295 1q5e d1q5ea_ A:40-44,49-53,54-64,321-329 1s1f d1s1fa_ A:38-45,50-55,56-66,310-317 1io8 d1io8a_ A:13-18,19-24,25-36,274-281 2j0d d2j0da1 A:70-77,78-85,86-103,390-397 2j0d d2j0db1 B:70-77,78-85,86-103,390-397 2v0m d2v0mb1 B:70-77,78-85,86-103,390-397 1pkf d1pkfa_ A:40-46,47-53,54-64,322-329 2v0m d2v0ma1 A:70-77,78-85,86-103,390-397 1q5d d1q5da_ A:40-46,47-53,54-64,322-329 1akd d1akda_ A:52-58,60-66,67-78,314-323 1w0e d1w0ea_ A:70-77,78-85,86-98,390-397 1n97 d1n97b_ B:32-39,40-47,48-58,288-295 1dz8 d1dz8a_ A:52-58,60-66,67-78,314-323 1phf d1phfa_ A:52-58,60-66,67-78,314-323 4cpp d4cppa_ A:52-58,60-66,67-78,314-323 1dz6 d1dz6a_ A:52-58,60-66,67-78,314-323 6cpp d6cppa_ A:52-58,60-66,67-78,314-323 1cp4 d1cp4a_ A:52-58,60-66,67-78,314-323 1dz9 d1dz9a_ A:52-58,60-66,67-78,314-323 1izo d1izoa_ A:35-42,43-50,51-61,310-317 1phc d1phca_ A:52-58,60-66,67-78,314-323 1iwk d1iwka_ A:52-58,60-66,67-78,314-323 1noo d1nooa_ A:52-58,60-66,67-78,314-323 2cpp d2cppa_ A:52-58,60-66,67-78,314-323 1izo d1izob_ B:35-42,43-50,51-61,310-317 1gem d1gema_ A:52-58,60-66,67-78,314-323 8cpp d8cppa_ A:52-58,60-66,67-78,314-323 1iwj d1iwja_ A:52-58,60-66,67-78,314-323 1iwi d1iwia_ A:52-58,60-66,67-78,314-323 1bvy d1bvyb_ B:38-45,46-53,54-64,349-356 3cpp d3cppa_ A:52-58,60-66,67-78,314-323 7cpp d7cppa_ A:52-58,60-66,67-78,314-323 4cp4 d4cp4a_ A:52-58,60-66,67-78,314-323 1w0f d1w0fa_ A:70-77,78-85,86-98,390-397 6cp4 d6cp4a_ A:52-58,60-66,67-78,314-323 5cpp d5cppa_ A:52-58,60-66,67-78,314-323 1phg d1phga_ A:52-58,60-66,67-78,314-323 2h7q d2h7qa1 A:52-58,60-66,67-78,314-323 1o76 d1o76a_ A:52-58,60-66,67-78,314-323 2z97 d2z97a1 A:52-58,60-66,67-78,314-322 3cp4 d3cp4a_ A:52-58,60-66,67-78,314-323 1phe d1phea_ A:52-58,60-66,67-78,314-323 1t86 d1t86a_ A:52-58,60-66,67-78,314-323 1k2o d1k2oa_ A:52-58,60-66,67-78,314-323 2cp4 d2cp4a_ A:52-58,60-66,67-78,314-323 1w0g d1w0ga_ A:70-77,78-85,86-98,390-397 2fe6 d2fe6a1 A:52-58,60-66,67-78,314-323 1pha d1phaa_ A:52-58,60-66,67-78,314-323 1phd d1phda_ A:52-58,60-66,67-78,314-323 1uyu d1uyua1 A:52-58,60-66,67-78,314-323 1phb d1phba_ A:52-58,60-66,67-78,314-323 1dz6 d1dz6b_ B:52-58,60-66,67-78,314-323 1dz4 d1dz4b_ B:52-58,60-66,67-78,314-323 1dz4 d1dz4a_ A:52-58,60-66,67-78,314-323 2feu d2feua1 A:52-58,60-66,67-78,314-323 5cp4 d5cp4a_ A:52-58,60-66,67-78,314-323 2fer d2fera1 A:52-58,60-66,67-78,314-323 1p2y d1p2ya_ A:52-58,60-66,67-78,314-323 1n97 d1n97a_ A:32-39,40-47,48-58,288-295 1mpw d1mpwb_ B:52-58,60-66,67-78,314-323 1t86 d1t86b_ B:52-58,60-66,67-78,314-323 1rf9 d1rf9a_ A:52-58,60-66,67-78,314-323 1o76 d1o76b_ B:52-58,60-66,67-78,314-323 2zax d2zaxa1 A:52-58,60-66,67-78,314-323 1p7r d1p7ra_ A:52-58,60-66,67-78,314-323 1tqn d1tqna_ A:70-77,78-85,86-98,390-397 1yrc d1yrca1 A:52-58,60-66,67-78,314-323 2feu d2feub1 B:52-58,60-66,67-78,314-323 1geb d1geba_ A:52-58,60-66,67-78,314-323 1c8j d1c8jb_ B:52-58,60-66,67-78,314-323 1re9 d1re9a_ A:42-48,50-56,57-68,304-313 1t88 d1t88a_ A:52-58,60-66,67-78,314-323 1t87 d1t87a_ A:52-58,60-66,67-78,314-323 2zaw d2zawa1 A:52-58,60-66,67-78,314-323 1gek d1geka_ A:52-58,60-66,67-78,314-323 1t88 d1t88b_ B:52-58,60-66,67-78,314-323 1mpw d1mpwa_ A:52-58,60-66,67-78,314-323 1c8j d1c8ja_ A:52-58,60-66,67-78,314-323 1uyu d1uyub1 B:52-58,60-66,67-78,314-323 1bvy d1bvya_ A:38-45,46-53,54-63,349-356 1j51 d1j51a_ A:52-58,60-66,67-78,314-323 1yrd d1yrda1 A:52-58,60-66,67-78,314-323 1j51 d1j51b_ B:52-58,60-66,67-78,314-323 1qmq d1qmqa_ A:52-58,60-66,67-78,314-323 1k2o d1k2ob_ B:52-58,60-66,67-78,314-323 2j1m d2j1mb1 B:38-45,46-53,54-64,349-356 2j1m d2j1ma1 A:38-45,46-53,54-64,349-356 1t85 d1t85a_ A:52-58,60-66,67-78,314-323 1dz9 d1dz9b_ B:52-58,60-66,67-78,314-323 2frz d2frza1 A:52-58,60-66,67-78,314-323 3ben d3bena1 A:38-45,46-53,54-64,349-356 1dz8 d1dz8b_ B:52-58,60-66,67-78,314-323 1t87 d1t87b_ B:52-58,60-66,67-78,314-323 1bu7 d1bu7a_ A:38-45,46-53,54-64,349-356 2frz d2frzb1 B:52-58,60-66,67-78,314-323 1jme d1jmea_ A:38-45,46-53,54-64,349-356 1smi d1smib_ B:38-45,46-53,54-64,349-356 2v0m d2v0md1 D:70-77,78-85,86-98,390-397 1fag d1fagd_ D:38-45,46-53,54-64,349-356 1p0x d1p0xa_ A:38-45,46-53,54-64,349-356 1j51 d1j51d_ D:52-58,60-66,67-78,314-323 2v0m d2v0mc1 C:70-77,78-85,86-98,390-397 1p0v d1p0va_ A:38-45,46-53,54-64,349-356 1zo9 d1zo9a1 A:38-45,46-53,54-64,349-356 3ben d3benb1 B:38-45,46-53,54-64,349-356 1jpz d1jpza_ A:38-45,46-53,54-64,349-356 1j51 d1j51c_ C:52-58,60-66,67-78,314-323 2a1m d2a1ma1 A:52-58,60-66,67-78,314-323 1gjm d1gjma_ A:52-58,60-66,67-78,314-323 1yqo d1yqoa1 A:38-45,46-53,54-64,349-356 2ij2 d2ij2b1 B:38-45,46-53,54-64,349-356 1lwl d1lwla_ A:52-58,60-66,67-78,314-323 1p0w d1p0wa_ A:38-45,46-53,54-64,349-356 2ci0 d2ci0a1 A:39-46,47-54,55-66,341-349 2a1m d2a1mb1 B:52-58,60-66,67-78,314-323 1fag d1fagc_ C:38-45,46-53,54-64,349-356 1izo d1izoc_ C:35-42,43-50,51-60,310-317 1jpz d1jpzb_ B:38-45,46-53,54-64,349-356 1fag d1faga_ A:38-45,46-53,54-64,349-356 1zo9 d1zo9b1 B:38-45,46-53,54-64,349-356 2cib d2ciba1 A:39-46,47-54,55-66,341-349 2bmh d2bmha_ A:38-45,46-53,54-64,349-356 2hpd d2hpda_ A:38-45,46-53,54-64,349-356 1smj d1smja_ A:38-45,46-53,54-64,349-356 1fah d1faha_ A:38-45,46-53,54-64,349-356 1smi d1smia_ A:38-45,46-53,54-64,349-356 2ij5 d2ij5f1 F:30-37,39-46,47-58,301-308 2ij7 d2ij7b1 B:30-37,39-46,47-58,301-308 2j4s d2j4sa1 A:38-45,46-53,54-64,349-356 2ij7 d2ij7c1 C:30-37,39-46,47-58,301-308 2ij7 d2ij7f1 F:30-37,39-46,47-58,301-308 2ij5 d2ij5e1 E:30-37,39-46,47-58,301-308 2ij5 d2ij5b1 B:30-37,39-46,47-58,301-308 2j4s d2j4sb1 B:38-45,46-53,54-64,349-356 2ij5 d2ij5a1 A:30-37,39-46,47-58,301-308 2ij5 d2ij5c1 C:30-37,39-46,47-58,301-308 2ij5 d2ij5d1 D:30-37,39-46,47-58,301-308 2ij7 d2ij7e1 E:30-37,39-46,47-58,301-308 2ij7 d2ij7a1 A:30-37,39-46,47-58,301-308 2ij2 d2ij2a1 A:38-45,46-53,54-64,349-356 1n40 d1n40a_ A:30-37,39-46,47-58,301-308 1bu7 d1bu7b_ B:38-45,46-53,54-64,349-356 2ij7 d2ij7d1 D:30-37,39-46,47-58,301-308 1yqo d1yqob1 B:38-45,46-53,54-64,349-356 1smj d1smjd_ D:38-45,46-53,54-64,348-356 3c6g d3c6gb1 B:75-82,83-90,91-103,396-403 1jme d1jmeb_ B:38-45,46-53,54-64,349-356 1p0x d1p0xb_ B:38-45,46-53,54-64,349-356 3dl9 d3dl9b1 B:75-82,83-90,91-103,396-403 2nnh d2nnha1 A:63-70,71-78,79-91,383-390 1n4g d1n4ga_ A:30-37,39-46,47-58,301-308 3czh d3czhb1 B:75-82,83-90,91-103,396-403 2q6n d2q6nb1 B:64-71,72-79,80-92,384-391 1p0v d1p0vb_ B:38-45,46-53,54-64,349-356 1z8p d1z8pa1 A:28-35,36-43,44-55,308-315 1egy d1egya_ A:28-35,36-43,44-55,308-315 3c6g d3c6ga1 A:75-82,83-90,91-103,396-403 1oxa d1oxaa_ A:28-35,36-43,44-55,308-315 3czh d3czha1 A:75-82,83-90,91-103,396-403 1p0w d1p0wb_ B:38-45,46-53,54-64,349-356 1z8o d1z8oa1 A:28-35,36-43,44-55,308-315 1jio d1jioa_ A:28-35,36-43,44-55,308-315 2nni d2nnia1 A:63-70,71-78,79-91,383-390 1u13 d1u13a_ A:39-46,47-54,55-65,341-349 2vn0 d2vn0a1 A:63-70,71-78,79-91,383-390 1fag d1fagb_ B:38-45,46-53,54-63,349-356 1jip d1jipa_ A:28-35,36-43,44-55,308-315 1nr6 d1nr6a_ A:63-70,71-78,79-91,380-387 1pq2 d1pq2b_ B:63-70,71-78,79-91,383-391 3dl9 d3dl9a1 A:75-82,83-90,91-103,396-403 1jin d1jina_ A:28-35,36-43,44-55,308-315 2nnh d2nnhb1 B:63-70,71-78,79-91,383-390 1eup d1eupa_ A:28-35,36-43,44-55,308-315 1x8v d1x8va_ A:39-46,47-54,55-65,341-349 1h5z d1h5za_ A:39-46,47-54,55-65,341-349 2vku d2vkua1 A:39-46,47-54,55-65,341-349 1e9x d1e9xa_ A:39-46,47-54,55-65,341-349 1ea1 d1ea1a_ A:39-46,47-54,55-65,341-349 2nnj d2nnja1 A:63-70,71-78,79-91,383-390 1dt6 d1dt6a_ A:63-70,71-78,79-91,380-387 2q6n d2q6nc1 C:64-71,72-79,80-92,384-391 1n6b d1n6ba_ A:63-70,71-78,79-91,380-387 1po5 d1po5a_ A:64-71,72-79,80-92,384-391 1pq2 d1pq2a_ A:63-70,71-78,79-91,383-390 2bz9 d2bz9b1 B:39-46,47-54,55-65,341-349 2bz9 d2bz9a1 A:39-46,47-54,55-65,341-349 2bdm d2bdma1 A:64-71,72-79,80-92,384-391 1smj d1smjb_ B:38-45,46-53,54-63,349-356 2q6n d2q6nd1 D:64-71,72-79,80-92,384-391 1jfb d1jfba_ A:30-37,39-46,47-57,307-314 2q6n d2q6na1 A:64-71,72-79,80-92,384-392 1gei d1geia_ A:30-37,39-46,47-57,307-314 1fah d1fahb_ B:38-45,46-53,54-63,349-356 1jfc d1jfca_ A:30-37,39-46,47-57,307-314 1cmj d1cmja_ A:30-37,39-46,47-57,307-314 2bmh d2bmhb_ B:38-45,46-53,54-63,349-356 1f25 d1f25a_ A:30-37,39-46,47-57,307-314 1f26 d1f26a_ A:30-37,39-46,47-57,307-314 1ehe d1ehea_ A:30-37,39-46,47-57,307-314 1gej d1geja_ A:30-37,39-46,47-57,307-314 1cl6 d1cl6a_ A:30-37,39-46,47-57,307-314 2q6n d2q6ne1 E:64-71,72-79,80-92,384-392 1rom d1roma_ A:30-37,39-46,47-57,307-314 1f24 d1f24a_ A:30-37,39-46,47-57,307-314 1smj d1smjc_ C:38-45,46-53,54-63,349-356 1cmn d1cmna_ A:30-37,39-46,47-57,307-314 1ged d1geda_ A:30-37,39-46,47-57,307-314 1ehg d1ehga_ A:30-37,39-46,47-57,307-314 2rom d2roma_ A:30-37,39-46,47-57,307-314 2q6n d2q6nf1 F:64-71,72-79,80-92,384-391 1ulw d1ulwa_ A:30-37,39-46,47-57,307-314 1ehf d1ehfa_ A:30-37,39-46,47-57,307-314 1suo d1suoa_ A:64-71,72-79,80-92,384-391 2hpd d2hpdb_ B:38-45,46-53,54-63,349-356 1odo d1odoa_ A:29-36,37-44,45-55,311-318 1r9o d1r9oa_ A:63-70,71-78,79-91,383-390 1og2 d1og2b_ B:63-70,71-78,79-91,383-390 1xqd d1xqda_ A:30-37,39-46,47-57,307-314 2q6n d2q6ng1 G:64-71,72-79,80-92,384-392 1og5 d1og5a_ A:63-70,71-78,79-91,383-390 1og5 d1og5b_ B:63-70,71-78,79-91,383-390 1og2 d1og2a_ A:63-70,71-78,79-91,383-390 1gwi d1gwib_ B:31-38,40-47,48-58,310-317 1gwi d1gwia_ A:31-38,40-47,48-58,310-317 77. c.109.1 PEP carboxykinase N-terminal domain PEP carboxykinase N-terminal domain contains mixed beta-sheets; topology is partly similar to that of the catalytic C-terminal domain 1khf d1khfa2 A:134-147,154-162,176-185,189-196 1m51 d1m51a2 A:134-147,154-162,176-185,189-196 1nhx d1nhxa2 A:134-147,154-162,176-185,189-196 2gmv d2gmva2 A:137-147,154-162,177-185,189-196 1khb d1khba2 A:137-147,154-162,176-185,189-196 1khg d1khga2 A:137-147,154-162,176-185,189-196 1khe d1khea2 A:137-147,154-162,176-185,189-196 2gmv d2gmvb2 B:137-147,154-162,176-185,189-196 1ii2 d1ii2a2 A:25-29,31-36,114-126,281-285 1ii2 d1ii2b2 B:25-29,31-36,114-126,281-285 1aq2 d1aq2a2 A:47-51,53-58,141-153,308-312 1k3d d1k3da2 A:47-51,53-58,141-153,308-312 1k3c d1k3ca2 A:47-51,53-58,141-153,308-312 2olq d2olqa2 A:47-51,53-58,141-153,308-312 2py7 d2py7x2 X:47-51,53-58,141-153,308-312 1ayl d1ayla2 A:47-51,53-58,141-153,308-312 2olr d2olra2 A:47-51,53-58,141-153,308-312 1os1 d1os1a2 A:47-51,53-58,141-153,308-312 2pxz d2pxzx2 X:47-51,53-58,141-153,308-312 2pc9 d2pc9d2 D:34-38,40-45,122-134,293-297 2pc9 d2pc9c2 C:34-38,40-45,122-134,293-297 2pc9 d2pc9a2 A:34-38,40-45,122-134,293-297 2pc9 d2pc9b2 B:34-38,40-45,122-134,293-297 1j3b d1j3ba2 A:34-38,40-45,122-134,293-297 1oen d1oena2 A:47-51,53-58,141-153,308-312 1xkv d1xkva2 A:34-38,40-45,122-134,293-297 1j3b d1j3bb2 B:34-38,40-45,122-134,293-297 1xkv d1xkvb2 B:34-38,40-45,122-134,293-297 78. c.110.1 DTD-like active form is a dimer ! DTD-like beta(2)-(alpha-beta)2-beta(3); 3 layers, a/b/b; some topological similarity to the N-terminal domain of MinC 1jke d1jkec_ C:1-9,24-33,38-52,71-78 1jke d1jkea_ A:1-9,24-33,38-52,71-78 1j7g d1j7ga_ A:1-9,24-33,38-52,71-78 1jke d1jked_ D:1-9,24-33,38-52,71-78 1jke d1jkeb_ B:1-9,24-33,38-52,71-78 1tc5 d1tc5a_ A:9-20,35-46,54-69,91-99 1tc5 d1tc5c_ C:9-20,35-46,54-69,91-99 1tc5 d1tc5b_ B:9-20,35-46,54-69,91-99 1tc5 d1tc5d_ D:9-20,35-46,54-68,91-99 79. d.130.1 S-adenosylmethionine synthetase S-adenosylmethionine synthetase duplication: consists of 3 similar intertwined domains ! structural repeat: beta-alpha-beta(2)-alpha-beta; two layers, alpha/beta 1fug d1fuga1 A:37-47,48-58,63-76,89-98 2p02 d2p02a1 A:74-84,85-95,100-113,126-131 1xrb d1xrba1 A:37-47,48-58,63-76,89-99 1mxa d1mxaa1 A:37-47,48-58,63-76,89-99 1xrc d1xrca1 A:37-47,48-58,63-76,89-99 1xra d1xraa1 A:37-47,48-58,63-76,89-99 1mxc d1mxca1 A:37-47,48-58,63-76,89-99 1mxb d1mxba1 A:37-47,48-58,63-76,89-99 1p7l d1p7la1 A:37-47,48-58,63-76,89-94 1rg9 d1rg9a1 A:37-47,48-58,63-76,89-94 1rg9 d1rg9c1 C:37-47,48-58,63-76,89-94 1p7l d1p7lc1 C:37-47,48-58,63-76,89-94 1p7l d1p7ld1 D:37-47,48-58,63-76,89-94 1xrb d1xrba2 A:163-174,175-188,194-207,220-225 1rg9 d1rg9d1 D:37-47,48-58,63-76,89-94 1p7l d1p7lb1 B:37-47,48-58,63-76,89-94 1rg9 d1rg9b1 B:37-47,48-58,63-76,89-94 1qm4 d1qm4b2 B:180-192,195-209,215-232,241-246 1qm4 d1qm4a2 A:180-192,195-209,215-232,241-246 1xra d1xraa2 A:163-174,175-188,194-206,220-225 1mxc d1mxca2 A:163-174,175-188,194-207,220-225 1qm4 d1qm4b1 B:53-63,64-74,79-92,105-115 1qm4 d1qm4a1 A:53-63,64-74,79-92,105-115 1fug d1fugb1 B:37-47,48-58,63-76,89-99 1o90 d1o90b1 B:53-63,64-74,79-92,105-115 1o90 d1o90a1 A:53-63,64-74,79-92,105-115 1o92 d1o92b1 B:53-63,64-74,79-92,105-115 1o92 d1o92a1 A:53-63,64-74,79-92,105-115 1o93 d1o93b1 B:53-63,64-74,79-92,105-115 1o93 d1o93a1 A:53-63,64-74,79-92,105-115 1o9t d1o9tb1 B:53-63,64-74,79-92,105-115 1o9t d1o9ta1 A:53-63,64-74,79-92,105-115 1p7l d1p7lc2 C:163-174,175-188,194-207,220-225 1rg9 d1rg9c2 C:163-174,175-188,194-207,220-225 1mxb d1mxba2 A:163-174,175-188,194-206,220-225 1p7l d1p7lb2 B:163-174,175-188,194-207,220-225 1rg9 d1rg9b2 B:163-174,175-188,194-207,220-225 1p7l d1p7ld2 D:163-174,175-188,194-207,220-225 1p7l d1p7la2 A:163-174,175-188,194-207,220-225 1rg9 d1rg9d2 D:163-174,175-188,194-207,220-225 1rg9 d1rg9a2 A:163-174,175-188,194-207,220-225 1xrc d1xrca2 A:163-174,175-188,194-207,220-225 1mxa d1mxaa2 A:163-174,175-188,194-207,220-225 1fug d1fuga2 A:163-174,177-188,194-207,220-225 2p02 d2p02a2 A:201-214,215-230,236-254,262-267 1fug d1fugb2 B:163-174,178-188,194-206,220-225 1o9t d1o9ta2 A:180-193,194-209,215-232,241-246 1o9t d1o9tb2 B:180-193,194-209,215-232,241-246 1o93 d1o93b2 B:180-193,194-209,215-232,241-246 1o93 d1o93a2 A:180-193,194-209,215-232,241-246 1o92 d1o92b2 B:180-193,194-209,215-233,241-246 1o90 d1o90b2 B:180-193,194-209,215-233,241-246 1o92 d1o92a2 A:180-193,194-209,215-233,241-246 1o90 d1o90a2 A:180-193,194-209,215-233,241-246 80. d.58.27 Translational regulator protein regA common fold is elaborated with additional secondary structures ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 1reg d1regx_ X:22-28,29-35,105-113,112-117 1reg d1regy_ Y:21-28,29-34,105-113,112-116 86. d.52.6 BolA-like Alpha-lytic protease prodomain-like core: alpha-beta(2)-(alpha)-beta; 2 layers: alpha/beta 1v9j d1v9ja_ A:46-53,60-68,75-88,95-103 1ny8 d1ny8a_ A:21-27,31-40,46-59,68-76 87. c.52.4 TBP-interacting protein-like contains extra C-terminal alpha+beta domain of complex fold with an embeded C2H2 zinc-finger Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest 2czr d2czra1 A:29-37,38-47,49-59,63-69 88. c.107.1 DHH phosphoesterases constituent families have similar domain organization with variable interdomain linker and spatial arrangement of the domains ! DHH phosphoesterases consists of two non-similar domains ! Domain 1 has parallel sheet of 6 strands, order 321456 ! Domain 2 has mixed sheet of 5 strands, order 12345; strands 1 & 4 are antiparallel to the rest 1wpm d1wpmb_ B:203-210,211-222,230-246,248-258 1wpp d1wppb_ B:205-212,213-224,232-248,250-260 1k23 d1k23a_ A:203-210,211-222,230-246,248-258 1k23 d1k23c_ C:203-210,211-222,230-246,248-258 1k23 d1k23b_ B:203-210,211-222,230-246,248-258 1wpp d1wppa_ A:205-212,213-224,232-248,250-260 1i74 d1i74b_ B:203-210,211-221,230-246,248-258 1i74 d1i74a_ A:203-210,211-221,230-246,248-258 1wpm d1wpma_ A:203-210,211-221,230-246,248-258 1k20 d1k20a_ A:205-212,213-223,232-248,250-260 2haw d2hawa1 A:203-210,211-221,230-246,248-258 1k20 d1k20b_ B:205-212,213-223,232-248,250-260 2haw d2hawb1 B:203-210,211-221,230-246,248-258 89. d.242.1 Obg GTP-binding protein C-terminal domain Obg GTP-binding protein C-terminal domain beta-(2)-alpha(3)-beta(2); 2 layers: beta/alpha; mixed beta-sheet: order 1234; strands 2 and 3 a parallel to each other 1udx d1udxa3 A:344-349,352-358,387-396,399-406 90. d.326.1 XisI-like XisI-like alpha-beta(4)-alpha-beta-alpha; 2 layers, a/b; antiparallel beta-sheet, order 1234, meander; the open side of beta-sheet provides dimerization interface 2nlv d2nlvb1 B:51-65,66-74,78-87,92-96 2nlv d2nlva1 A:51-65,66-74,78-87,92-96 2nwv d2nwva1 A:53-67,68-76,80-89,94-99 2nvm d2nvma1 A:65-79,80-88,91-101,106-110 2nvm d2nvmb1 B:65-79,80-88,91-101,106-110 91. d.147.1 Methenyltetrahydromethanopterin cyclohydrolase Methenyltetrahydromethanopterin cyclohydrolase consists of two alpha+beta subdomains 1qlm d1qlma_ A:202-212,233-241,243-254,287-295 1qlm d1qlma_ A:103-111,134-141,146-158,163-170 1qlm d1qlma_ A:24-30,32-38,45-58,163-170 92. d.52.4 YhbC-like, N-terminal domain Alpha-lytic protease prodomain-like core: alpha-beta(2)-(alpha)-beta; 2 layers: alpha/beta 1ib8 d1ib8a2 A:26-37,38-48,53-68,79-86 93. d.227.1 OsmC-like OsmC-like swapped dimer of beta(3)-alpha-beta(2)-alpha(2)-beta subunits; mixed beta-sheet; order: 321[4][5][6]; buried helix 1lql d1lqlc_ C:468-480,490-501,504-519,531-541 1usp d1uspb_ B:77-87,92-102,106-121,132-138 1lql d1lqle_ E:868-880,890-901,904-919,931-941 1lql d1lqld_ D:668-680,690-701,704-719,731-741 1lql d1lqlf_ F:1068-1080,1090-1101,1104-1119,1131-1141 1lql d1lqlg_ G:1268-1280,1290-1301,1304-1319,1331-1341 1lql d1lqlj_ J:1867-1880,1890-1902,1904-1919,1931-1941 1lql d1lqli_ I:1667-1680,1690-1702,1704-1720,1731-1741 1ml8 d1ml8a_ A:62-76,80-94,97-114,123-134 2pn2 d2pn2a1 A:71-82,85-97,101-115,125-132 1lql d1lqlb_ B:268-280,288-301,304-319,331-341 1lql d1lqlg_ G:1268-1280,1290-1301,1319-1329,1331-1341 1lql d1lqle_ E:868-880,890-901,919-929,931-941 1usp d1uspa_ A:77-89,90-102,106-121,133-139 1lql d1lqla_ A:67-80,88-102,104-119,131-141 1lql d1lqlf_ F:1068-1080,1090-1101,1119-1129,1131-1141 1vla d1vlad_ D:66-81,83-98,102-118,127-137 1vla d1vlab_ B:66-81,83-98,102-118,127-137 1lql d1lqlh_ H:1467-1480,1488-1502,1519-1529,1531-1541 1vla d1vlaa_ A:66-81,83-98,102-118,127-137 1vla d1vlac_ C:66-81,83-98,102-118,127-137 1lql d1lqlb_ B:268-280,288-301,319-329,331-341 1lql d1lqlc_ C:468-480,490-501,519-529,531-541 1lql d1lqld_ D:668-680,690-701,719-729,731-741 1lql d1lqlh_ H:1467-1480,1488-1502,1504-1519,1531-1541 1lql d1lqla_ A:67-80,88-102,119-129,131-141 1n2f d1n2fb_ B:80-92,93-105,109-124,135-142 1n2f d1n2fa_ A:80-92,93-105,109-124,135-142 1lql d1lqli_ I:1667-1680,1690-1702,1719-1729,1731-1741 1lql d1lqlj_ J:1867-1880,1890-1902,1919-1929,1931-1941 1ml8 d1ml8a_ A:62-76,80-94,113-124,123-134 2d7v d2d7va1 A:91-107,109-125,131-146,154-161 1ukk d1ukkb_ B:72-88,89-104,108-123,133-142 1ukk d1ukka_ A:72-88,89-104,108-123,133-142 2d7v d2d7vb1 B:91-107,109-125,131-146,154-161 2onf d2onfa1 A:68-84,86-102,105-120,130-139 2onf d2onfb1 B:68-84,86-102,105-120,130-139 1qwi d1qwia_ A:75-90,91-106,110-125,133-143 1nye d1nyea_ A:94-110,111-126,130-145,153-162 1qwi d1qwib_ B:75-90,91-106,110-125,133-143 1qwi d1qwic_ C:74-90,91-106,110-125,133-143 1qwi d1qwid_ D:74-90,91-106,110-125,133-143 1nye d1nyeb_ B:294-310,311-326,330-345,353-362 1nye d1nyef_ F:1094-1110,1111-1126,1130-1145,1153-1162 1nye d1nyec_ C:494-510,511-526,530-545,553-563 1nye d1nyed_ D:694-710,711-726,730-745,753-763 1nye d1nyee_ E:894-910,911-926,930-945,953-963 94. d.249.1 Hypothetical protein Ta1206 can be divided into an N-terminal, tetramerisation all-beta subdomain and a C-terminal alpha+beta subdomain related by a circular permutation to the Y-family DNA-polymerase 'fingers' subdomain ! Hypothetical protein Ta1206 beta(4)-alpha-beta(2)-alpha(2); mixed, predominately antiparallel beta-sheet, order: 123465, strands 4 and 5 are parallel to each other 1qw2 d1qw2a_ A:42-51,52-58,61-69,71-76 97. d.52.2 GMP synthetase C-terminal dimerisation domain Alpha-lytic protease prodomain-like core: alpha-beta(2)-(alpha)-beta; 2 layers: alpha/beta 1gpm d1gpma3 A:445-453,468-478,489-505,508-514 1gpm d1gpmb3 B:445-453,468-479,489-505,508-514 1gpm d1gpmd3 D:445-452,469-479,489-505,509-514 1gpm d1gpmc3 C:445-452,469-479,489-505,509-514 101. e.23.1 Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 4 domains: (1&2) duplication: share the same alpha/beta fold; (3) beta-barrel; (4) alpha+beta 1lci d1lcia_ A:463-474,478-488,494-506,515-519 1ba3 d1ba3a_ A:463-474,478-488,494-506,515-519 1ry2 d1ry2a_ A:603-607,618-623,640-654,660-665 1pg3 d1pg3a_ A:541-552,556-566,572-588,594-599 1pg4 d1pg4b_ B:541-552,556-566,572-588,594-599 1pg3 d1pg3b_ B:541-552,556-566,572-588,594-599 1pg4 d1pg4a_ A:541-552,556-566,572-588,594-599 3cw9 d3cw9a1 A:426-437,441-451,457-469,477-482 1amu d1amub_ B:455-466,468-478,483-496,502-507 3cw9 d3cw9b1 B:426-437,441-451,457-469,477-482 1ult d1ultb_ B:462-468,476-482,489-501,509-514 1amu d1amua_ A:455-466,468-478,483-495,502-507 1t5d d1t5dx_ X:426-438,440-451,457-469,477-482 1t5h d1t5hx_ X:426-438,440-451,457-469,477-482 1mdb d1mdba_ A:454-465,469-479,484-496,504-509 1md9 d1md9a_ A:454-465,469-479,484-496,504-509 1ult d1ulta_ A:459-470,474-484,489-501,510-514 1mdf d1mdfa_ A:454-465,469-479,484-496,504-509 102. d.307.1 Nqo5-like Nqo5-like core: alpha-beta(2)-alpha-beta(3); 2 layers, a/b; mixed beta-sheet, order 12534, strands 2 and 5 are parallel 2fug d2fugw1 W:15-20,24-29,30-43,86-95 2fug d2fuge1 E:15-20,24-29,33-43,86-94 2fug d2fug51 5:15-20,24-29,33-43,86-95 2fug d2fugn1 N:15-20,24-29,33-43,86-95 106. b.3.6 Aromatic compound dioxygenase Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold 1eo2 d1eo2b_ B:458-467,472-481,489-496,504-509 1eob d1eobb_ B:458-467,472-481,489-496,504-509 1eoc d1eocb_ B:458-467,472-481,489-496,504-509 3pcd d3pcdr_ R:459-467,472-481,489-496,504-509 2bux d2buxb1 B:460-467,472-481,489-496,504-509 1eo9 d1eo9b_ B:460-467,472-481,489-496,504-509 3pcc d3pccn_ N:458-467,472-481,489-496,504-509 1ykp d1ykpd1 D:459-467,472-481,489-496,504-509 2buz d2buzb1 B:459-467,473-481,489-496,504-509 2buq d2buqb1 B:459-467,473-481,489-496,504-509 2buy d2buyb1 B:459-467,473-481,489-496,504-509 2bum d2bumb1 B:460-467,473-481,489-496,504-509 2bur d2burb1 B:459-467,473-481,489-496,504-509 2bv0 d2bv0b1 B:460-467,473-481,489-496,504-509 1eoa d1eoab_ B:460-467,473-481,489-496,504-509 1ykn d1yknd1 D:458-467,472-481,489-496,505-509 1ykk d1ykkj1 J:458-467,472-481,489-496,505-509 1ykl d1yklh1 H:458-467,472-481,489-496,505-509 2buu d2buub1 B:459-467,473-481,489-496,504-509 1ykk d1ykkd1 D:458-467,472-481,489-496,505-509 1ykn d1yknl1 L:458-467,472-481,489-496,505-509 3pch d3pchr_ R:458-467,472-481,489-496,505-509 1ykk d1ykkh1 H:458-467,472-481,489-496,505-509 1ykm d1ykmj1 J:458-467,472-481,489-496,505-509 1ykm d1ykmf1 F:458-467,472-481,489-496,505-509 1ykk d1ykkf1 F:458-467,472-481,489-496,505-509 1ykn d1yknh1 H:459-467,472-481,489-496,505-509 1ykm d1ykmd1 D:458-467,472-481,489-496,505-509 3pca d3pcan_ N:458-467,472-481,489-496,505-509 1ykm d1ykmb1 B:458-467,472-481,489-496,505-509 3pch d3pcho_ O:458-467,472-481,489-496,505-509 1ykk d1ykkl1 L:458-467,472-481,489-496,505-509 3pcf d3pcfo_ O:459-467,472-481,489-496,505-509 2buv d2buvb1 B:459-467,473-481,489-496,504-509 1ykm d1ykmh1 H:458-467,472-481,489-496,505-509 3pch d3pchm_ M:458-467,472-481,489-496,505-509 3pcd d3pcdn_ N:458-467,472-481,489-496,505-509 2pcd d2pcdq_ Q:459-467,472-481,489-496,505-509 3pcf d3pcfp_ P:459-467,472-481,489-496,505-509 3pci d3pcip_ P:458-467,472-481,489-496,505-509 1ykm d1ykml1 L:458-467,472-481,489-496,505-509 1yko d1ykoj1 J:458-467,472-481,489-496,505-509 3pcf d3pcfn_ N:459-467,472-481,489-496,505-509 3pca d3pcam_ M:458-467,472-481,489-496,505-509 3pca d3pcao_ O:459-467,472-481,489-496,505-509 2pcd d2pcdp_ P:459-467,472-481,489-496,505-509 2pcd d2pcdr_ R:459-467,472-481,489-496,505-509 3pcf d3pcfm_ M:458-467,472-481,489-496,505-509 1yko d1ykoh1 H:458-467,472-481,489-496,505-509 1yko d1ykob1 B:458-467,472-481,489-496,505-509 3pcc d3pccp_ P:459-467,472-481,489-496,505-509 2but d2butb1 B:460-467,473-481,489-496,504-509 2buw d2buwb1 B:459-467,473-481,489-496,504-509 1ykk d1ykkb1 B:458-467,472-481,489-496,505-509 1ykp d1ykpj1 J:459-467,472-481,489-496,505-509 3pcb d3pcbm_ M:458-467,472-481,489-496,505-509 3pce d3pceo_ O:459-467,472-481,489-496,505-509 3pcj d3pcjr_ R:459-467,472-481,489-496,505-509 3pcl d3pclo_ O:459-467,472-481,489-496,505-509 3pcb d3pcbo_ O:459-467,472-481,489-496,505-509 3pce d3pcer_ R:459-467,472-481,489-496,505-509 3pcm d3pcmr_ R:459-467,472-481,489-496,505-509 1ykp d1ykph1 H:459-467,472-481,489-496,505-509 1yko d1ykod1 D:458-467,472-481,489-496,505-509 3pcn d3pcnr_ R:459-467,472-481,489-496,505-509 3pcg d3pcgn_ N:459-467,472-481,489-496,505-509 1yko d1ykol1 L:458-467,472-481,489-496,505-509 3pcg d3pcgr_ R:459-467,472-481,489-496,505-509 3pcc d3pccm_ M:458-467,472-481,489-496,505-509 3pcl d3pcln_ N:459-467,472-481,489-496,505-509 3pcb d3pcbr_ R:459-467,472-481,489-496,505-509 3pcb d3pcbn_ N:459-467,472-481,489-496,505-509 3pcm d3pcmo_ O:459-467,472-481,489-496,505-509 2pcd d2pcdn_ N:459-467,472-481,489-496,505-509 1yko d1ykof1 F:458-467,472-481,489-496,505-509 3pce d3pcen_ N:459-467,472-481,489-496,505-509 3pcj d3pcjn_ N:459-467,472-481,489-496,505-509 3pce d3pceq_ Q:459-467,472-481,489-496,505-509 3pcb d3pcbp_ P:459-467,472-481,489-496,505-509 3pck d3pckr_ R:459-467,472-481,489-496,505-509 3pcn d3pcnn_ N:459-467,472-481,489-496,505-509 3pca d3pcar_ R:459-467,472-481,489-496,505-509 3pcd d3pcdp_ P:459-467,472-481,489-496,505-509 3pci d3pcir_ R:458-467,472-481,489-496,505-509 3pcn d3pcno_ O:459-467,472-481,489-496,505-509 3pci d3pcin_ N:459-467,472-481,489-496,505-509 1ykp d1ykpf1 F:459-467,472-481,489-496,505-509 3pcm d3pcmn_ N:459-467,472-481,489-496,505-509 3pce d3pcep_ P:459-467,472-481,489-496,505-509 3pcc d3pcco_ O:459-467,472-481,489-496,505-509 3pcn d3pcnm_ M:459-467,472-481,489-496,505-509 3pcn d3pcnp_ P:459-467,472-481,489-496,505-509 3pci d3pcim_ M:459-467,472-481,489-496,505-509 3pck d3pckn_ N:459-467,472-481,489-496,505-509 3pce d3pcem_ M:459-467,472-481,489-496,505-509 3pci d3pcio_ O:459-467,472-481,489-496,505-509 3pcf d3pcfq_ Q:459-467,472-481,489-496,504-510 3pch d3pchn_ N:458-467,472-481,489-496,505-510 3pcf d3pcfr_ R:459-467,472-481,489-496,505-510 3pch d3pchp_ P:458-467,472-481,489-496,505-510 3pch d3pchq_ Q:458-467,472-481,489-496,505-510 3pca d3pcap_ P:458-467,472-481,489-496,505-510 3pcl d3pclr_ R:459-467,472-481,489-496,505-510 3pcl d3pclp_ P:459-467,472-481,489-496,505-510 3pck d3pckq_ Q:459-467,472-481,489-496,505-510 3pcg d3pcgp_ P:459-467,472-481,489-496,505-510 1ykp d1ykpl1 L:458-467,472-481,489-496,505-510 3pcn d3pcnq_ Q:459-467,472-481,489-496,505-510 3pcd d3pcdo_ O:459-467,472-481,489-496,505-510 3pck d3pckp_ P:459-467,472-481,489-496,505-510 3pcj d3pcjp_ P:459-467,472-481,489-496,505-510 3pck d3pckm_ M:459-467,472-481,489-496,505-510 3pcj d3pcjc_ C:125-132,138-146,148-155,170-178 3pci d3pcib_ B:125-132,138-146,148-155,170-178 3pcn d3pcne_ E:125-132,138-146,148-155,170-178 3pcg d3pcgb_ B:125-132,138-146,148-155,170-178 1ykl d1yklc1 C:125-132,138-146,148-155,170-178 3pcb d3pcbb_ B:125-132,138-146,148-155,170-178 3pcc d3pccb_ B:125-132,138-146,148-155,170-178 3pca d3pcae_ E:125-132,138-146,148-155,170-178 2pcd d2pcde_ E:125-132,138-146,148-155,170-178 3pcb d3pcbf_ F:125-132,138-146,148-155,170-178 3pcm d3pcme_ E:125-132,138-146,148-155,170-178 3pcc d3pcce_ E:125-132,138-146,148-155,170-178 3pch d3pchd_ D:125-132,138-146,148-155,170-178 3pcg d3pcge_ E:125-132,138-146,148-155,170-178 3pcb d3pcbe_ E:125-132,138-146,148-155,170-178 2pcd d2pcdb_ B:125-132,138-146,148-155,170-178 1ykp d1ykpi1 I:125-132,138-146,148-155,170-178 3pca d3pcab_ B:125-132,138-146,148-155,170-178 3pcj d3pcje_ E:125-132,138-146,148-155,170-178 3pcm d3pcmb_ B:125-132,138-146,148-155,170-178 3pch d3pchf_ F:125-132,138-146,148-155,170-178 3pcj d3pcjf_ F:125-132,138-146,148-155,170-178 3pcn d3pcnb_ B:125-132,138-146,148-155,170-178 1ykk d1ykkk1 K:125-132,138-146,148-155,170-178 3pck d3pckb_ B:125-132,138-146,148-155,170-178 3pci d3pcid_ D:125-132,138-146,148-155,170-178 3pcn d3pcnd_ D:125-132,138-146,148-155,170-178 3pcl d3pclc_ C:125-132,138-146,148-155,170-178 3pcf d3pcfe_ E:125-132,138-146,148-155,170-178 3pcn d3pcnc_ C:125-132,138-146,148-155,170-178 3pck d3pcke_ E:125-132,138-146,148-155,170-178 3pcf d3pcff_ F:125-132,138-146,148-155,170-178 3pcf d3pcfb_ B:125-132,138-146,148-155,170-178 3pcj d3pcjb_ B:125-132,138-146,148-155,170-178 3pce d3pcee_ E:125-132,138-146,148-155,170-178 1yko d1ykoi1 I:125-132,138-146,148-155,170-178 3pcb d3pcbd_ D:125-132,138-146,148-155,170-178 1ykk d1ykkc1 C:125-132,138-146,148-155,170-178 3pcl d3pcle_ E:125-132,138-146,148-155,170-178 1ykn d1ykne1 E:125-132,138-146,148-155,170-178 1yko d1ykok1 K:125-132,138-146,148-155,170-178 3pcb d3pcbc_ C:125-132,138-146,148-155,170-178 3pci d3pcie_ E:125-132,138-146,148-155,170-178 3pch d3pchb_ B:125-132,138-146,148-155,170-178 3pck d3pckc_ C:125-132,138-146,148-155,170-178 3pca d3pcaf_ F:125-132,138-146,148-155,170-178 3pca d3pcad_ D:125-132,138-146,148-155,170-178 3pcn d3pcnf_ F:125-132,138-146,148-155,170-178 3pcg d3pcgd_ D:125-132,138-146,148-155,170-178 3pck d3pckf_ F:125-132,138-146,148-155,170-178 3pcd d3pcdf_ F:125-132,138-146,148-155,170-178 1ykl d1yklk1 K:125-132,138-146,148-155,170-178 3pce d3pceb_ B:125-132,138-146,148-155,170-178 3pcj d3pcjd_ D:125-132,138-146,148-155,170-178 3pcf d3pcfd_ D:125-132,138-146,148-155,170-178 3pca d3pcaa_ A:125-132,138-146,148-155,170-178 3pce d3pcef_ F:125-132,138-146,148-155,170-178 3pca d3pcac_ C:125-132,138-146,148-155,170-178 3pcm d3pcmc_ C:125-132,138-146,148-155,170-178 3pcc d3pccf_ F:125-132,138-146,148-155,170-178 1ykl d1ykle1 E:125-132,138-146,148-155,170-178 3pce d3pcec_ C:125-132,138-146,148-155,170-178 3pcd d3pcde_ E:125-132,138-146,148-155,170-178 3pci d3pcif_ F:125-132,138-146,148-155,170-178 3pcf d3pcfc_ C:125-132,138-146,148-155,170-178 1ykl d1ykli1 I:125-132,138-146,148-155,170-178 3pci d3pcic_ C:125-132,138-146,148-155,170-178 3pck d3pckd_ D:125-132,138-146,148-155,170-178 1ykn d1yknc1 C:125-132,138-146,148-155,170-178 3pcn d3pcna_ A:125-132,138-146,148-155,170-178 3pce d3pced_ D:125-132,138-146,148-155,170-178 3pcm d3pcmd_ D:125-132,138-146,148-155,170-178 3pcl d3pclb_ B:125-132,138-146,148-155,170-178 3pch d3pche_ E:125-132,138-146,148-155,170-178 3pch d3pcha_ A:125-132,138-146,148-155,170-178 1ykm d1ykmi1 I:125-132,138-146,148-155,170-178 1ykk d1ykki1 I:125-132,138-146,148-155,170-178 3pcd d3pcdd_ D:125-132,138-146,148-155,170-178 3pcg d3pcgc_ C:125-132,138-146,148-155,170-178 1ykk d1ykka1 A:125-132,138-146,148-155,170-178 2pcd d2pcdf_ F:125-132,138-146,148-155,170-178 2pcd d2pcdc_ C:125-132,138-146,148-155,170-178 1ykm d1ykmk1 K:125-132,138-146,148-155,170-178 3pcd d3pcdc_ C:125-132,138-146,148-155,170-178 1ykk d1ykkg1 G:125-132,138-146,148-155,170-178 2pcd d2pcda_ A:125-132,138-146,148-155,170-178 3pcc d3pccd_ D:125-132,138-146,148-155,170-178 1yko d1ykoa1 A:125-132,138-146,148-155,170-178 3pcj d3pcja_ A:125-132,138-146,148-155,170-178 1ykm d1ykme1 E:125-132,138-146,148-155,170-178 3pci d3pcia_ A:125-132,138-146,148-155,170-178 3pcl d3pcld_ D:125-132,138-146,148-155,170-178 1ykn d1ykni1 I:125-132,138-146,148-155,170-178 3pcg d3pcgf_ F:125-132,138-146,148-155,170-178 3pcc d3pccc_ C:125-132,138-146,148-155,170-178 3pck d3pcka_ A:125-132,138-146,148-155,170-178 3pch d3pchc_ C:125-132,138-146,148-155,170-178 1ykl d1yklg1 G:125-132,138-146,148-155,170-178 3pcb d3pcba_ A:125-132,138-146,148-155,170-178 3pcf d3pcfa_ A:125-132,138-146,148-155,170-178 1ykn d1yknk1 K:125-132,138-146,148-155,170-178 3pcc d3pcca_ A:125-132,138-146,148-155,170-178 1ykm d1ykma1 A:125-132,138-146,148-155,170-178 3pce d3pcea_ A:125-132,138-146,148-155,170-178 1ykm d1ykmg1 G:125-132,138-146,148-155,170-178 3pcg d3pcga_ A:125-132,138-146,148-155,170-178 3pcm d3pcmf_ F:125-132,138-146,148-155,170-178 2pcd d2pcdd_ D:125-132,138-146,148-155,170-178 1ykp d1ykpa1 A:125-132,138-146,148-155,170-178 3pcm d3pcma_ A:125-132,138-146,148-155,170-178 3pcd d3pcdb_ B:125-132,138-146,148-155,170-178 1ykn d1ykna1 A:125-132,138-146,148-155,170-178 3pcd d3pcda_ A:125-132,138-146,148-155,170-178 3pcl d3pcla_ A:125-132,138-146,148-155,170-178 3pcl d3pclf_ F:125-132,138-146,148-155,170-178 1ykl d1ykla1 A:125-132,138-146,148-155,170-178 3pcg d3pcgb_ B:125-132,138-146,155-162,170-178 1ykk d1ykkk1 K:125-132,138-146,155-162,170-178 1ykn d1yknc1 C:125-132,138-146,155-162,170-178 1ykn d1ykng1 G:125-132,138-146,148-155,170-178 3pcb d3pcbb_ B:125-132,138-146,155-162,170-178 3pch d3pchb_ B:125-132,138-146,155-162,170-178 3pca d3pcae_ E:125-132,138-146,155-162,170-178 3pca d3pcab_ B:125-132,138-146,155-162,170-178 3pck d3pckb_ B:125-132,138-146,155-162,170-178 3pcn d3pcne_ E:125-132,138-146,155-162,170-178 1eo2 d1eo2a_ A:125-132,138-146,148-155,170-178 3pci d3pcib_ B:125-132,138-146,155-162,170-178 1ykn d1ykne1 E:125-132,138-146,155-162,170-178 2pcd d2pcdb_ B:125-132,138-146,155-162,170-178 1ykl d1yklg1 G:125-132,138-146,155-162,170-178 3pcc d3pccb_ B:125-132,138-146,155-162,170-178 3pcm d3pcmb_ B:125-132,138-146,155-162,170-178 3pcj d3pcje_ E:125-132,138-146,155-162,170-178 3pcl d3pclb_ B:125-132,138-146,155-162,170-178 2bux d2buxa1 A:125-132,138-146,148-155,170-178 3pcb d3pcbe_ E:125-132,138-146,155-162,170-178 1ykl d1yklc1 C:125-132,138-146,155-162,170-178 2bum d2buma1 A:125-132,138-146,148-155,170-178 3pci d3pcid_ D:125-132,138-146,155-162,170-178 1ykp d1ykpi1 I:125-132,138-146,155-162,170-178 3pcn d3pcnd_ D:125-132,138-146,155-162,170-178 3pck d3pcke_ E:125-132,138-146,155-162,170-178 1ykn d1yknk1 K:125-132,138-146,155-162,170-178 1ykl d1ykli1 I:125-132,138-146,155-162,170-178 3pca d3pcad_ D:125-132,138-146,155-162,170-178 3pcn d3pcnb_ B:125-132,138-146,155-162,170-178 1ykn d1ykni1 I:125-132,138-146,155-162,170-178 3pcj d3pcjc_ C:125-132,138-146,155-162,170-178 3pcd d3pcdf_ F:125-132,138-146,155-162,170-178 2buv d2buva1 A:125-132,138-146,148-155,170-178 1ykk d1ykkc1 C:125-132,138-146,155-162,170-178 3pcf d3pcfe_ E:125-132,138-146,155-162,170-178 1eoa d1eoaa_ A:125-132,138-146,148-155,170-178 3pcm d3pcme_ E:125-132,138-146,155-162,170-178 3pcj d3pcjd_ D:125-132,138-146,155-162,170-178 3pch d3pchd_ D:125-132,138-146,155-162,170-178 1eoc d1eoca_ A:125-132,138-146,148-155,170-178 3pcg d3pcge_ E:125-132,138-146,155-162,170-178 3pcl d3pcle_ E:125-132,138-146,155-162,170-178 3pca d3pcaa_ A:125-132,138-146,155-162,170-178 1eob d1eoba_ A:125-132,138-146,148-155,170-178 2buw d2buwa1 A:125-132,138-146,148-155,170-178 3pcf d3pcfb_ B:125-132,138-146,155-162,170-178 3pcj d3pcjb_ B:125-132,138-146,155-162,170-178 3pcf d3pcfd_ D:125-132,138-146,155-162,170-178 2pcd d2pcde_ E:125-132,138-146,155-162,170-178 3pce d3pcee_ E:125-132,138-146,155-162,170-178 2bur d2bura1 A:125-132,138-146,148-155,170-178 3pch d3pcha_ A:125-132,138-146,155-162,170-178 3pci d3pcie_ E:125-132,138-146,155-162,170-178 3pcd d3pcdc_ C:125-132,138-146,155-162,170-178 3pcb d3pcbc_ C:125-132,138-146,155-162,170-178 1yko d1ykoi1 I:125-132,138-146,155-162,170-178 3pcc d3pcce_ E:125-132,138-146,155-162,170-178 3pcl d3pclc_ C:125-132,138-146,155-162,170-178 3pcn d3pcnc_ C:125-132,138-146,155-162,170-178 3pcb d3pcbd_ D:125-132,138-146,155-162,170-178 3pce d3pceb_ B:125-132,138-146,155-162,170-178 3pcg d3pcgd_ D:125-132,138-146,155-162,170-178 3pcd d3pcde_ E:125-132,138-146,155-162,170-178 3pck d3pckd_ D:125-132,138-146,155-162,170-178 3pcd d3pcdd_ D:125-132,138-146,155-162,170-178 3pcg d3pcgc_ C:125-132,138-146,155-162,170-178 1ykk d1ykki1 I:125-132,138-146,155-162,170-178 3pcl d3pcld_ D:125-132,138-146,155-162,170-178 3pci d3pcic_ C:125-132,138-146,155-162,170-178 1yko d1ykok1 K:125-132,138-146,155-162,170-178 3pch d3pchf_ F:125-132,138-146,155-162,170-178 3pck d3pcka_ A:125-132,138-146,155-162,170-178 3pca d3pcac_ C:125-132,138-146,155-162,170-178 3pcf d3pcfc_ C:125-132,138-146,155-162,170-178 3pce d3pced_ D:125-132,138-146,155-162,170-178 3pce d3pcec_ C:125-132,138-146,155-162,170-178 3pcf d3pcff_ F:125-132,138-146,155-162,170-178 3pcf d3pcfa_ A:125-132,138-146,155-162,170-178 2pcd d2pcda_ A:125-132,138-146,155-162,170-178 3pch d3pche_ E:125-132,138-146,155-162,170-178 3pca d3pcaf_ F:125-132,138-146,155-162,170-178 3pcm d3pcmc_ C:125-132,138-146,155-162,170-178 1ykm d1ykmi1 I:125-132,138-146,155-162,170-178 3pcn d3pcna_ A:125-132,138-146,155-162,170-178 1ykk d1ykkg1 G:125-132,138-146,155-162,170-178 3pcc d3pccf_ F:125-132,138-146,155-162,170-178 3pcb d3pcbf_ F:125-132,138-146,155-162,170-178 3pcd d3pcdb_ B:125-132,138-146,155-162,170-178 3pcj d3pcjf_ F:125-132,138-146,155-162,170-178 3pcm d3pcmd_ D:125-132,138-146,155-162,170-178 1ykl d1yklk1 K:125-132,138-146,155-162,170-178 3pcc d3pccd_ D:125-132,138-146,155-162,170-178 3pck d3pckc_ C:125-132,138-146,155-162,170-178 3pch d3pchc_ C:125-132,138-146,155-162,170-178 3pcg d3pcga_ A:125-132,138-146,155-162,170-178 3pcj d3pcja_ A:125-132,138-146,155-162,170-178 1ykl d1ykle1 E:125-132,138-146,155-162,170-178 1ykk d1ykka1 A:125-132,138-146,155-162,170-178 3pce d3pcef_ F:125-132,138-146,155-162,170-178 2pcd d2pcdc_ C:125-132,138-146,155-162,170-178 3pcg d3pcgf_ F:125-132,138-146,155-162,170-178 3pck d3pckf_ F:125-132,138-146,155-162,170-178 3pce d3pcea_ A:125-132,138-146,155-162,170-178 3pci d3pcia_ A:125-132,138-146,155-162,170-178 1ykm d1ykmk1 K:125-132,138-146,155-162,170-178 3pcl d3pcla_ A:125-132,138-146,155-162,170-178 2pcd d2pcdd_ D:125-132,138-146,155-162,170-178 3pci d3pcif_ F:125-132,138-146,155-162,170-178 1yko d1ykoa1 A:125-132,138-146,155-162,170-178 2pcd d2pcdf_ F:125-132,138-146,155-162,170-178 3pcc d3pcca_ A:125-132,138-146,155-162,170-178 1ykn d1ykna1 A:125-132,138-146,155-162,170-178 3pcc d3pccc_ C:125-132,138-146,155-162,170-178 3pcn d3pcnf_ F:125-132,138-146,155-162,170-178 3pcd d3pcda_ A:125-132,138-146,155-162,170-178 3pcb d3pcba_ A:125-132,138-146,155-162,170-178 3pcm d3pcma_ A:125-132,138-146,155-162,170-178 1ykm d1ykma1 A:125-132,138-146,155-162,170-178 1ykm d1ykmg1 G:125-132,138-146,155-162,170-178 1ykm d1ykme1 E:125-132,138-146,155-162,170-178 3pcm d3pcmf_ F:125-132,138-146,155-162,170-178 3pcl d3pclf_ F:125-132,138-146,155-162,170-178 1ykp d1ykpa1 A:125-132,138-146,155-162,170-178 1ykn d1ykng1 G:125-132,138-146,155-162,170-178 1ykl d1ykla1 A:125-132,138-146,155-162,170-178 2bux d2buxa1 A:125-132,138-146,155-162,170-178 2buq d2buqa1 A:125-132,138-146,155-162,170-178 2buv d2buva1 A:125-132,138-146,155-162,170-178 1eo2 d1eo2a_ A:125-132,138-146,155-162,170-178 2but d2buta1 A:125-132,138-146,155-162,170-178 2buy d2buya1 A:125-132,138-146,155-162,170-178 1eob d1eoba_ A:125-132,138-146,155-162,170-178 1eo9 d1eo9a_ A:125-132,138-146,155-162,170-178 2bum d2buma1 A:125-132,138-146,155-162,170-178 2buu d2buua1 A:125-132,138-146,155-162,170-178 2bur d2bura1 A:125-132,138-146,155-162,170-178 1eoa d1eoaa_ A:125-132,138-146,155-162,170-178 1eoc d1eoca_ A:125-132,138-146,155-162,170-178 2buw d2buwa1 A:125-132,138-146,155-162,170-178 2buz d2buza1 A:125-132,138-146,155-162,170-178 2bv0 d2bv0a1 A:125-132,138-146,155-162,170-178 112. e.2.1 Replication terminator protein (Tus) Replication terminator protein (Tus) contains a cluster of helices and a beta-sandwich 1ecr d1ecra_ A:32-41,93-102,103-133,256-264 2i05 d2i05a1 A:32-41,93-103,103-133,256-265 2ewj d2ewja1 A:32-41,93-103,103-133,256-265 2i06 d2i06a1 A:32-41,94-103,103-133,259-265 117. c.1.33 EAL domain-like variant of the beta/alpha-barrel fold with strand 1 being antiparallel to the rest ! TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 2bas d2basb1 B:13-25,26-41,57-80,84-89 2bas d2basa1 A:13-25,26-41,57-80,84-89