1. d.159.1 Metallo-dependent phosphatases different families of this superfamily are groupped in a single Pfam family, Metallo-dependent phosphatases 4 layers: alpha/beta/beta/alpha; mixed beta sheets; contains duplication 2nxf d2nxfa1 A:259-265,267-275,277-285,313-321 3d03 d3d03c1 C:189-195,197-205,206-214,235-244 3d03 d3d03a1 A:189-195,197-205,206-214,235-244 3d03 d3d03f1 F:189-195,197-205,206-214,235-244 3kbp d3kbpc2 C:317-324,326-332,353-361,387-395 3kbp d3kbpb2 B:317-324,326-332,353-361,387-395 3kbp d3kbpa2 A:317-324,326-332,353-361,387-395 3kbp d3kbpd2 D:317-324,326-332,353-361,387-395 2zo9 d2zo9b1 B:189-195,197-205,206-214,234-244 2zoa d2zoab1 B:187-195,197-205,206-214,234-244 2zoa d2zoaa1 A:187-195,197-205,206-214,234-244 2hyo d2hyoa1 A:199-207,209-217,218-226,248-256 2qfr d2qfrb2 B:317-323,325-332,354-361,387-395 1qhw d1qhwa_ A:236-242,244-252,254-262,313-323 2qfr d2qfra2 A:315-323,327-332,353-361,387-395 4kbp d4kbpd2 D:317-323,327-332,353-361,387-395 1w24 d1w24a1 A:109-115,117-125,126-134,170-181 2hy1 d2hy1a1 A:199-207,209-217,218-226,248-256 2hyp d2hypa1 A:199-207,209-217,218-226,248-256 4kbp d4kbpa2 A:317-324,326-332,353-361,387-396 2r17 d2r17b1 B:109-115,117-125,126-134,170-181 2qfp d2qfpc2 C:317-323,326-332,354-360,387-395 1z2x d1z2xb1 B:109-115,117-125,126-134,170-181 1z2w d1z2wa1 A:109-115,117-125,126-134,170-181 1z2x d1z2xa1 A:109-115,117-125,126-134,170-181 1kbp d1kbpb2 B:317-323,326-332,354-360,387-396 1kbp d1kbpc2 C:317-323,326-332,354-360,387-396 1z2w d1z2wb1 B:109-115,117-125,126-134,170-181 1kbp d1kbpd2 D:317-323,326-332,354-360,387-396 1kbp d1kbpa2 A:317-323,326-332,354-360,387-396 2r17 d2r17a1 A:109-115,117-125,126-134,170-181 2yvt d2yvta1 A:214-220,222-229,230-237,242-250 2qfp d2qfpb2 B:317-323,326-332,354-360,387-396 2qfp d2qfpd2 D:317-323,326-332,354-360,387-396 3dsc d3dsca1 A:200-206,208-216,217-225,253-260 1s8e d1s8eb_ B:200-206,208-216,217-225,253-260 1ii7 d1ii7a_ A:200-206,208-216,217-225,253-260 1s8e d1s8ea_ A:200-206,208-216,217-225,253-260 1qhw d1qhwa_ A:236-242,244-252,254-262,292-300 1ii7 d1ii7b_ B:200-206,208-216,217-225,253-260 3ck2 d3ck2a1 A:104-110,112-120,121-129,168-172 2a22 d2a22b1 B:124-130,132-140,141-149,185-196 1it6 d1it6a_ A:242-248,254-259,262-267,279-287 1qfc d1qfca_ A:214-221,223-231,233-241,292-301 1it6 d1it6b_ B:242-248,254-259,262-267,279-287 1xzw d1xzwa2 A:316-322,326-331,353-360,386-395 1xzw d1xzwb2 B:816-822,826-831,853-860,886-895 1jk7 d1jk7a_ A:242-248,254-259,262-267,279-287 1ute d1utea_ A:215-221,223-231,233-241,292-301 1u32 d1u32a_ A:242-248,254-259,262-267,279-287 1qfc d1qfca_ A:214-221,223-231,233-241,271-280 3ck2 d3ck2a1 A:104-110,112-120,121-129,140-149 2qfp d2qfpa2 A:317-323,327-332,354-361,387-396 1fjm d1fjma_ A:242-248,254-259,262-267,278-287 1ute d1utea_ A:215-221,223-231,233-241,271-280 3c9f d3c9fb2 B:242-248,251-258,261-269,272-280 1g5b d1g5bb_ B:180-186,192-196,197-202,212-218 1fjm d1fjmb_ B:242-248,254-259,262-267,278-287 3c9f d3c9fa2 A:242-248,251-258,261-269,272-280 2bcd d2bcda1 A:242-248,254-259,262-267,278-287 1z2w d1z2wb1 B:109-115,117-125,126-134,147-157 2r17 d2r17a1 A:109-115,117-125,126-134,147-157 1z2w d1z2wa1 A:109-115,117-125,126-134,147-157 3d03 d3d03d1 D:189-195,197-205,206-213,235-244 3d03 d3d03e1 E:189-195,197-205,206-213,235-244 1s3n d1s3na_ A:114-120,122-130,131-139,146-156 4kbp d4kbpa2 A:317-324,326-332,353-361,414-422 1aui d1auia_ A:275-281,287-294,301-306,315-326 1s3n d1s3nb_ B:314-320,322-330,331-339,346-356 2ahd d2ahdc1 C:114-120,122-130,131-139,146-156 1z2x d1z2xb1 B:109-115,117-125,126-134,147-157 2ahd d2ahda1 A:114-120,122-130,131-139,146-156 2ahd d2ahdd1 D:314-320,322-330,331-339,346-356 2ahd d2ahdb1 B:314-320,322-330,331-339,346-356 3kbp d3kbpb2 B:317-324,326-332,353-361,414-422 4kbp d4kbpc2 C:317-323,326-332,353-360,414-422 4kbp d4kbpb2 B:317-323,326-332,353-360,414-422 2r17 d2r17b1 B:109-115,117-125,126-134,147-157 3kbp d3kbpc2 C:317-324,326-332,353-361,414-422 3kbp d3kbpd2 D:317-324,326-332,353-361,414-422 2dxl d2dxla1 A:187-195,197-205,206-213,234-244 2zo9 d2zo9c1 C:187-195,197-205,206-213,234-244 2dxl d2dxlb1 B:187-195,197-205,206-213,234-244 3kbp d3kbpa2 A:317-324,326-332,353-361,414-422 2a22 d2a22a1 A:124-130,132-140,141-149,185-196 1s3m d1s3ma_ A:114-120,122-130,131-139,146-156 1s3m d1s3mb_ B:314-320,322-330,331-339,346-356 2dxn d2dxnb1 B:187-195,197-205,206-213,234-244 2dxn d2dxna1 A:187-195,197-205,206-213,234-244 3d03 d3d03b1 B:189-195,198-205,206-213,235-244 2qfr d2qfra2 A:315-323,327-332,353-361,414-422 1w24 d1w24a1 A:109-115,117-125,126-134,147-157 2a22 d2a22b1 B:124-130,132-140,141-149,162-172 1su1 d1su1d_ D:119-127,129-137,138-146,173-182 2a22 d2a22a1 A:124-130,132-140,141-149,162-172 1su1 d1su1c_ C:119-127,129-137,138-146,173-182 4kbp d4kbpd2 D:317-323,327-332,353-361,414-422 4kbp d4kbpb2 B:317-323,326-332,353-360,387-396 4kbp d4kbpc2 C:317-323,326-332,353-360,387-396 1su1 d1su1a_ A:119-127,129-137,138-146,173-182 1z2x d1z2xa1 A:109-115,117-125,126-134,146-157 1su1 d1su1b_ B:119-127,129-137,138-146,173-182 1uf3 d1uf3e_ E:182-187,189-197,198-206,210-218 1s3l d1s3la_ A:114-120,124-130,131-137,146-156 1s3l d1s3lb_ B:314-320,324-330,331-337,346-356 1kbp d1kbpc2 C:317-323,326-332,354-360,414-422 1uf3 d1uf3a_ A:182-187,189-197,198-206,210-218 1kbp d1kbpb2 B:317-323,326-332,354-360,414-422 1kbp d1kbpa2 A:317-323,326-332,354-360,414-422 1mf8 d1mf8a_ A:275-281,287-295,301-306,314-326 1kbp d1kbpd2 D:317-323,326-332,354-360,414-422 1uf3 d1uf3d_ D:182-187,189-197,198-206,210-218 2qfp d2qfpb2 B:317-323,326-332,354-360,414-422 2cv9 d2cv9c1 C:164-170,178-182,184-193,227-238 1m63 d1m63e_ E:275-281,287-296,301-306,314-326 2qfp d2qfpc2 C:317-323,326-332,354-360,414-422 1uf3 d1uf3f_ F:182-187,189-197,198-206,210-218 1uf3 d1uf3b_ B:182-187,189-197,198-206,210-218 2qfp d2qfpd2 D:317-323,326-332,354-360,414-422 1wao d1wao22 2:421-427,433-438,441-446,455-467 1nnw d1nnwa_ A:169-175,177-185,186-194,204-213 1su1 d1su1a_ A:119-127,129-137,138-146,156-163 1uf3 d1uf3c_ C:182-187,189-197,198-206,210-218 1wao d1wao12 1:421-427,433-438,441-446,455-467 2npp d2nppc1 C:235-241,247-252,255-260,268-280 1su1 d1su1b_ B:119-127,129-137,138-146,156-163 1wao d1wao42 4:421-427,433-438,441-446,455-467 2p6b d2p6bc1 C:275-281,287-296,301-306,314-326 1su1 d1su1c_ C:119-127,129-137,138-146,156-163 2p6b d2p6ba1 A:275-281,287-295,301-306,314-326 2z06 d2z06d1 D:164-170,178-182,184-193,226-238 1nnw d1nnwb_ B:169-175,177-185,186-194,204-213 2nyl d2nylc1 C:235-241,247-252,255-260,268-280 2z06 d2z06b1 B:164-170,178-182,184-193,226-238 1wao d1wao32 3:421-427,433-438,441-446,455-467 1m63 d1m63a_ A:275-281,287-292,301-306,314-326 1su1 d1su1d_ D:119-127,129-137,138-146,156-163 1tco d1tcoa_ A:275-281,287-294,301-306,314-326 1t70 d1t70a_ A:167-173,181-185,187-196,229-241 2nyl d2nylf1 F:235-241,247-252,255-260,268-280 2npp d2nppf1 F:235-241,247-252,255-260,268-280 2z06 d2z06c1 C:164-170,178-182,184-193,226-238 2nym d2nymf1 F:235-241,247-252,255-260,268-280 2nym d2nymc1 C:235-241,247-252,255-260,268-280 1t70 d1t70b_ B:467-473,481-485,487-496,529-541 1t70 d1t70c_ C:767-773,781-785,787-796,829-841 2bdx d2bdxa1 A:242-248,254-259,262-269,278-287 2cv9 d2cv9d1 D:164-170,177-182,184-190,227-238 1oid d1oidb2 B:245-251,277-281,282-287,293-304 1oi8 d1oi8a2 A:245-251,277-281,282-287,293-304 1oid d1oida2 A:245-251,277-281,282-287,293-304 1oi8 d1oi8b2 B:245-251,277-281,282-287,293-304 1t70 d1t70g_ G:1967-1973,1981-1985,1987-1993,2029-2041 1t70 d1t70h_ H:2267-2273,2281-2285,2287-2295,2329-2341 1hpu d1hpub2 B:245-251,277-281,282-287,293-304 1t70 d1t70d_ D:1067-1073,1081-1085,1087-1095,1129-1141 1t70 d1t70f_ F:1667-1673,1681-1685,1687-1695,1729-1741 1ho5 d1ho5a2 A:245-251,277-281,282-287,293-304 1hp1 d1hp1a2 A:245-251,277-281,282-287,293-304 3dw8 d3dw8f1 F:235-241,247-252,255-260,268-280 1ush d1usha2 A:245-251,277-281,282-287,293-304 1ho5 d1ho5b2 B:245-251,277-281,282-287,293-304 3c5w d3c5wc1 C:235-241,247-252,255-260,268-280 1oie d1oiea2 A:245-251,277-281,282-287,293-304 1hpu d1hpud2 D:245-251,277-281,282-287,293-304 1s95 d1s95b_ B:421-427,433-438,441-446,454-467 1hpu d1hpua2 A:245-251,277-281,282-287,293-304 1s95 d1s95a_ A:421-427,433-438,441-446,454-466 1t70 d1t70e_ E:1367-1373,1381-1385,1387-1393,1429-1441 2ush d2ushb2 B:245-251,277-281,282-287,293-304 1hpu d1hpuc2 C:245-251,277-281,282-287,293-304 2ie3 d2ie3c1 C:235-241,247-252,255-260,268-280 3dw8 d3dw8c1 C:235-241,247-252,255-260,268-280 2cv9 d2cv9b1 B:164-170,178-182,184-192,227-238 2ie4 d2ie4c1 C:235-241,247-252,255-260,268-280 2ush d2usha2 A:245-251,277-281,282-287,293-304 2nxf d2nxfa1 A:259-265,267-275,277-285,296-303 1s70 d1s70a_ A:242-248,254-259,262-267,275-287 2z06 d2z06a1 A:164-170,178-182,184-192,226-238 1t71 d1t71a_ A:177-183,190-195,197-203,239-253 1g5b d1g5ba_ A:180-186,192-196,197-201,212-218 2cv9 d2cv9a1 A:164-170,178-182,184-192,226-238 2z1a d2z1aa2 A:232-237,258-264,266-273,279-290 1g5b d1g5bc_ C:180-186,192-196,197-201,212-218 2qfr d2qfrb2 B:317-323,325-332,354-361,414-422 2qfp d2qfpa2 A:317-323,327-332,354-361,414-422 1xzw d1xzwb2 B:816-822,826-831,853-860,913-921 1xzw d1xzwa2 A:316-322,326-331,353-360,413-421 4. b.133.1 Dextranase, N-terminal domain Dextranase, N-terminal domain sandwich; 9 strands in 2 sheets; greek-key 1ogo d1ogox1 X:97-107,157-165,191-200,363-369 1ogm d1ogmx1 X:97-107,157-165,191-200,363-369 1ogo d1ogox1 X:97-107,157-165,191-200,387-395 1ogm d1ogmx1 X:97-107,157-165,191-200,387-395 1ogo d1ogox1 X:97-107,157-165,191-200,338-344 1ogm d1ogmx1 X:97-107,157-165,191-200,338-344 1ogo d1ogox1 X:97-107,157-165,191-200,408-416 1ogm d1ogmx1 X:97-107,157-165,191-200,408-416 1ogo d1ogox1 X:97-107,157-165,191-200,293-298 1ogm d1ogmx1 X:97-107,157-165,191-200,293-298 16. e.69.1 Poly(A) polymerase catalytic subunit-like Central domain d2 is distantly related to the nucleotidyltransferase superfamily (scop_sf 81301) Poly(A) polymerase catalytic subunit-like 3 domains; d1: all-alpha, contains HhH motif; d2: alpha+beta of nucleotidyltransferase fold (scop_cf 81302); d3: [alpha+beta; beta(3)-alpha-beta(3)-alpha(2); 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 123654, strands 2 and 5 are antiparallel to the rest 2gaf d2gafd1 D:355-361,387-393,394-400,402-408 2ga9 d2ga9d1 D:355-361,387-393,394-400,402-407 21. b.85.2 Head decoration protein D (gpD, major capsid protein D) beta-clip double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll 1c5e d1c5eb_ B:18-26,33-42,43-49,62-67 1tcz d1tcza_ A:18-26,33-42,43-49,62-67 1tcz d1tczd_ D:618-626,633-642,643-649,662-667 1c5e d1c5ec_ C:18-26,33-42,43-49,62-67 1c5e d1c5ea_ A:18-26,33-42,43-49,62-67 1tcz d1tczf_ F:1017-1026,1033-1042,1043-1049,1062-1067 1tcz d1tczc_ C:417-426,433-442,443-449,462-467 1tcz d1tczb_ B:218-226,233-242,243-249,262-267 1tcz d1tcze_ E:818-826,833-842,843-849,862-867 1td0 d1td0a_ A:21-29,36-45,46-52,65-70 1td0 d1td0c_ C:421-429,436-445,446-452,465-470 1td0 d1td0d_ D:621-629,636-645,646-652,665-670 1td0 d1td0b_ B:221-229,236-245,246-252,265-270 1td4 d1td4a_ A:21-29,36-45,46-52,65-70 1td3 d1td3a_ A:21-29,36-45,46-52,65-70 1td3 d1td3b_ B:221-229,236-245,246-252,265-270 1td3 d1td3c_ C:421-429,436-445,446-452,465-470 24. b.85.6 MoeA C-terminal domain-like beta-clip double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll 2fts d2ftsa1 A:655-663,669-680,687-693,720-725 1g8r d1g8rb1 B:330-337,344-357,359-366,391-396 1g8r d1g8ra1 A:330-337,344-357,359-366,391-396 1t3e d1t3eb1 B:655-663,669-680,687-692,720-725 2nqv d2nqvb1 B:330-337,344-357,359-366,391-396 2nrs d2nrsa1 A:330-337,344-357,359-366,391-396 2fu3 d2fu3b1 B:655-663,669-680,687-692,720-725 1t3e d1t3ea1 A:655-663,669-680,687-693,720-725 2nqv d2nqva1 A:330-337,344-357,359-366,391-396 2nqs d2nqsb1 B:330-336,344-357,359-366,391-396 2fu3 d2fu3a1 A:655-663,669-680,687-692,720-725 2nqs d2nqsa1 A:330-336,344-357,359-366,391-396 1wu2 d1wu2a1 A:326-333,342-352,353-358,383-388 2nro d2nrob1 B:330-337,344-357,359-366,388-396 2nqk d2nqka1 A:330-336,344-357,359-366,388-395 1xi8 d1xi8b1 B:326-334,341-352,353-358,381-388 2nqq d2nqqd1 D:330-337,344-357,359-366,388-396 2nqq d2nqqb1 B:330-337,344-357,359-366,388-396 1fc5 d1fc5b1 B:330-336,344-357,359-366,388-396 1fc5 d1fc5a1 A:330-336,344-357,359-366,388-396 2nqr d2nqra1 A:330-337,344-357,359-366,388-396