1. b.40.2 Bacterial enterotoxins
OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
1qoh d1qoha_ A:119-125,126-132,133-147,149-154
1qoh d1qohf_ F:119-125,126-132,133-147,149-154
1qoh d1qohn_ N:419-425,426-432,433-447,449-454
1qoh d1qohp_ P:119-125,126-132,133-147,149-154
1qoh d1qohl_ L:219-225,226-232,233-247,249-254
2bos d2bosc_ C:318-325,326-332,333-347,349-354
2bos d2bosa_ A:118-125,126-132,133-147,149-154
1qoh d1qohs_ S:419-425,426-432,433-447,449-454
1qoh d1qoho_ O:518-525,526-532,533-547,549-554
2bos d2bosb_ B:219-225,226-232,233-247,249-254
1qoh d1qohg_ G:218-225,226-232,233-247,249-254
1qoh d1qohc_ C:318-325,326-332,333-347,349-354
2bos d2bosd_ D:418-425,426-432,433-447,449-454
2bos d2bose_ E:519-525,526-532,533-547,549-554
1qoh d1qohe_ E:518-525,526-532,533-547,549-554
1qoh d1qohi_ I:418-425,426-432,433-447,449-454
1qoh d1qohb_ B:218-225,226-232,233-247,249-254
1qoh d1qohq_ Q:218-225,226-232,233-247,249-254
1qoh d1qohm_ M:318-325,326-332,333-347,349-354
1qoh d1qohd_ D:418-425,426-432,433-447,449-454
1qoh d1qohj_ J:518-525,526-532,533-547,549-554
1qoh d1qohr_ R:318-325,326-332,333-347,349-354
1qoh d1qohh_ H:318-325,326-332,333-347,349-354
1qoh d1qohk_ K:118-125,126-132,133-147,149-154
1qoh d1qoht_ T:518-525,526-532,533-547,549-554
1c48 d1c48d_ D:418-425,426-432,433-447,449-454
1c4q d1c4qc_ C:318-325,326-332,333-347,349-354
1dm0 d1dm0g_ G:19-25,26-32,33-47,49-54
1c4q d1c4qe_ E:518-525,526-532,533-547,549-554
1c4q d1c4qa_ A:118-125,126-132,133-147,149-154
1c48 d1c48b_ B:218-225,226-232,233-247,249-254
2ga4 d2ga4e1 E:18-24,25-31,32-46,47-53
1c48 d1c48a_ A:118-125,126-132,133-147,149-154
1dm0 d1dm0d_ D:18-25,26-32,33-47,49-54
1r4q d1r4qk_ K:18-25,26-32,33-47,49-54
1r4q d1r4qc_ C:18-25,26-32,33-47,49-54
1czw d1czwc_ C:318-325,326-332,333-347,349-354
1czw d1czwd_ D:418-425,426-432,433-447,449-454
1czw d1czwf_ F:118-125,126-132,133-147,149-154
1czw d1czwg_ G:218-225,226-232,233-247,249-254
1czw d1czwh_ H:318-325,326-332,333-347,349-354
1czw d1czwa_ A:118-125,126-132,133-147,149-154
1czw d1czwe_ E:518-525,526-532,533-547,549-554
1czw d1czwj_ J:518-525,526-532,533-547,549-554
1czw d1czwb_ B:218-225,226-232,233-247,249-254
1czw d1czwi_ I:418-425,426-432,433-447,449-454
1c4q d1c4qd_ D:418-425,426-432,433-447,449-454
1r4q d1r4qf_ F:18-25,26-31,33-47,49-54
1c4q d1c4qb_ B:218-225,226-232,233-247,249-254
1dm0 d1dm0j_ J:19-25,26-32,33-47,49-54
1r4p d1r4pd_ D:18-24,25-31,32-46,47-53
1d1i d1d1ic_ C:318-325,326-332,333-347,349-354
1d1k d1d1ka_ A:118-125,126-132,133-147,149-154
1dm0 d1dm0h_ H:19-25,26-32,33-47,49-54
1d1k d1d1kd_ D:418-425,426-432,433-447,449-454
1d1k d1d1ke_ E:518-525,526-532,533-547,549-554
1d1i d1d1ia_ A:118-125,126-132,133-147,149-154
1d1k d1d1kc_ C:318-325,326-332,333-347,349-354
1d1i d1d1ie_ E:518-525,526-532,533-547,549-554
1d1k d1d1kb_ B:218-225,226-232,233-247,249-254
1r4q d1r4qh_ H:18-25,26-32,33-47,49-54
1d1i d1d1ib_ B:218-225,226-232,233-247,249-254
1d1i d1d1id_ D:418-425,426-432,433-447,449-454
1dm0 d1dm0c_ C:18-25,26-32,33-47,49-54
1r4q d1r4qe_ E:18-25,26-32,33-47,49-54
2ga4 d2ga4f1 F:18-24,25-31,32-46,47-53
1r4p d1r4pe_ E:17-24,25-31,32-46,47-53
1dm0 d1dm0k_ K:18-25,26-32,33-47,49-54
1c48 d1c48c_ C:318-325,326-332,333-347,349-354
1r4q d1r4qg_ G:18-25,26-32,33-47,49-54
1c48 d1c48e_ E:518-525,526-532,533-547,549-554
1dm0 d1dm0i_ I:19-25,26-32,33-47,49-54
1czg d1czge_ E:518-525,526-532,533-547,549-554
1dm0 d1dm0b_ B:18-25,26-32,33-47,49-54
1r4p d1r4pb_ B:18-24,25-31,32-46,47-53
1r4q d1r4qb_ B:18-25,26-32,33-47,49-54
1czg d1czga_ A:118-125,126-132,133-147,149-154
1czg d1czgd_ D:418-425,426-432,433-447,449-454
1czg d1czgb_ B:218-225,226-232,233-247,249-254
1czg d1czgc_ C:318-325,326-332,333-347,349-354
1dm0 d1dm0e_ E:19-25,26-32,33-47,49-54
1r4q d1r4qd_ D:18-25,26-32,33-47,49-54
1qnu d1qnud_ D:418-425,426-432,433-447,449-454
1qnu d1qnue_ E:518-525,526-532,533-547,549-554
1qnu d1qnub_ B:218-225,226-232,233-247,249-254
1qnu d1qnuc_ C:318-325,326-332,333-347,349-354
1qnu d1qnua_ A:118-125,126-132,133-147,149-154
1cqf d1cqfb_ B:218-225,226-232,233-247,249-254
1cqf d1cqfc_ C:318-325,326-332,333-347,349-354
1cqf d1cqfa_ A:118-125,126-132,133-147,149-154
1cqf d1cqfd_ D:418-425,426-432,433-447,449-454
2c5c d2c5cj1 J:18-25,26-32,33-47,49-54
2c5c d2c5cf1 F:18-25,26-32,33-47,49-54
1cqf d1cqfe_ E:518-525,526-532,533-547,549-554
1bos d1bosf_ F:2118-2125,2126-2132,2133-2147,2149-2154
2ga4 d2ga4b1 B:17-24,25-31,32-46,47-53
1bos d1bosj_ J:2518-2525,2526-2532,2533-2547,2549-2554
1bos d1bosk_ K:3118-3125,3126-3132,3133-3147,3149-3154
1bos d1bosc_ C:1318-1325,1326-1332,1333-1347,1349-1354
2c5c d2c5cb1 B:18-25,26-32,33-47,49-54
1bos d1bosr_ R:4318-4325,4326-4332,4333-4347,4349-4354
2c5c d2c5ci1 I:18-25,26-32,33-47,49-54
1bos d1bost_ T:4518-4525,4526-4532,4533-4547,4549-4554
1bos d1bosh_ H:2318-2325,2326-2332,2333-2347,2349-2354
1bos d1bosa_ A:1118-1125,1126-1132,1133-1147,1149-1154
1bos d1bosp_ P:4118-4125,4126-4132,4133-4147,4149-4154
1bos d1bosn_ N:3418-3425,3426-3432,3433-3447,3449-3454
1bos d1bosq_ Q:4218-4225,4226-4232,4233-4247,4249-4254
1r4p d1r4pf_ F:17-24,25-31,32-46,47-53
2c5c d2c5ch1 H:18-25,26-32,33-47,49-54
1bos d1bosb_ B:1218-1225,1226-1232,1233-1247,1249-1254
2c5c d2c5cc1 C:18-25,26-32,33-47,49-54
2c5c d2c5cg1 G:18-25,26-32,33-47,49-54
1bos d1bosg_ G:2218-2225,2226-2232,2233-2247,2249-2254
2c5c d2c5cd1 D:18-25,26-32,33-47,49-54
1bos d1boso_ O:3518-3525,3526-3532,3533-3547,3549-3554
1bos d1bosi_ I:2418-2425,2426-2432,2433-2447,2449-2454
1bos d1bose_ E:1518-1525,1526-1532,1533-1547,1549-1554
1bos d1bosl_ L:3218-3225,3226-3232,3233-3247,3249-3254
2c5c d2c5ce1 E:18-25,26-32,33-47,49-54
1bos d1bosd_ D:1418-1425,1426-1432,1433-1447,1449-1454
1bos d1boss_ S:4418-4425,4426-4432,4433-4447,4449-4454
1r4p d1r4pc_ C:17-24,25-31,32-46,47-53
1bos d1bosm_ M:3318-3325,3326-3332,3333-3347,3349-3354
2c5c d2c5ca1 A:18-25,26-32,33-47,49-54
1r4q d1r4qi_ I:18-25,26-32,33-47,49-54
2ga4 d2ga4c1 C:17-24,25-31,32-46,47-53
2ga4 d2ga4d1 D:17-24,25-31,32-46,47-53
1r4q d1r4qj_ J:18-25,26-32,33-47,49-54
1dm0 d1dm0f_ F:18-25,26-31,33-47,49-55
1seb d1sebh1 H:47-53,62-68,70-80,81-87
1seb d1sebd1 D:47-53,62-68,70-80,81-87
1uns d1unsa1 A:47-53,62-68,70-80,81-87
1ste d1stea1 A:47-53,62-68,70-80,81-87
1i4x d1i4xa1 A:47-55,62-68,70-80,81-87
1se2 d1se2a1 A:47-55,62-68,70-80,81-87
4ull d4ulla_ A:19-24,27-32,35-47,49-55
1enf d1enfa1 A:39-45,51-57,59-67,70-76
2. b.52.1 Barwin-like endoglucanases
Double psi beta-barrel barrel, closed; n=6, S=10; complex topology with crossover (psi) loops
2pi8 d2pi8a1 A:117-122,145-151,152-163,164-169
2pi8 d2pi8c1 C:117-122,145-151,152-163,164-169
3. g.37.1 beta-beta-alpha zinc fingers
beta-beta-alpha zinc fingers simple fold, consisting of the N-terminal beta-hairpin and C-terminal alpha-helical region; each part provides two zinc-coordinating residues with the observed sequences including C2H2, C2HC and CHHC
2dlq d2dlqa2 A:35-40,41-46,47-59,66-71
4. g.44.1 RING/U-box
RING/U-box dimetal(zinc)-bound alpha+beta motif; structurally diverse
1t1h d1t1ha_ A:264-268,270-274,274-285,287-291
1v87 d1v87a_ A:55-60,61-66,66-77,82-87
5. b.52.2 ADC-like
Double psi beta-barrel barrel, closed; n=6, S=10; complex topology with crossover (psi) loops
2pjh d2pjhb1 B:55-62,64-74,85-93,148-155
1s3s d1s3sb1 B:54-61,65-74,85-93,149-156
1cz4 d1cz4a1 A:40-46,48-56,70-78,132-136
1s3s d1s3se1 E:55-62,64-74,85-93,149-156
1s3s d1s3sa1 A:53-62,64-74,85-93,149-156
1e32 d1e32a1 A:53-62,64-74,85-93,149-156
1r7r d1r7ra1 A:53-62,64-74,85-93,149-156
1cz5 d1cz5a1 A:40-46,48-57,70-78,132-136
1s3s d1s3sc1 C:53-62,64-74,85-93,149-156
1s3s d1s3sd1 D:53-62,64-74,85-93,149-156
1wlf d1wlfa2 A:46-51,55-59,77-85,140-148
1qdn d1qdnc1 C:31-39,43-52,63-71,133-141
1qdn d1qdna1 A:31-39,43-52,63-71,133-141
1qcs d1qcsa1 A:31-39,43-51,63-71,133-141
1qdn d1qdnb1 B:31-39,43-51,63-71,133-141
6. c.103.1 MTH938-like
MTH938-like core: 3 layers, b+a/b/a ; the central mixed sheet of 5 strands: order 21534; strand 2 is antiparallel to the rest
2cyj d2cyja1 A:9-14,15-19,93-105,109-116
1ihn d1ihna_ A:18-23,24-28,95-110,112-120
1ihn d1ihnb_ B:18-23,24-28,95-110,112-120
2fi9 d2fi9a1 A:25-29,30-34,102-117,119-126
2fvt d2fvta1 A:23-27,28-32,101-113,118-126
7. b.45.1 FMN-binding split barrel related to the ferredoxin reductase-like FAD-binding domain !
Split barrel-like barrel; n=6, S=10; greek-key
2idb d2idbc1 C:162-167,214-222,224-234,263-267
2idb d2idba1 A:162-167,214-222,224-234,263-267
2idb d2idbb1 B:162-167,214-222,224-233,263-267
1eje d1ejea_ A:29-37,77-84,88-97,121-125
1usf d1usfb_ B:21-29,68-75,79-90,107-112
1usc d1uscb_ B:21-29,68-75,79-90,107-112
1usc d1usca_ A:21-29,68-75,79-90,107-112
1usf d1usfa_ A:21-29,68-75,79-90,107-112
1yoa d1yoaa1 A:17-25,64-71,75-85,104-110
1rz0 d1rz0f_ F:17-25,64-71,75-84,99-104
1rz0 d1rz0a_ A:17-25,64-71,75-84,99-104
1rz0 d1rz0c_ C:17-25,64-71,75-84,99-104
1rz0 d1rz0h_ H:17-25,64-71,75-84,99-104
1rz1 d1rz1f_ F:17-25,64-71,75-84,99-104
1rz0 d1rz0b_ B:17-25,64-71,75-84,99-104
1rz0 d1rz0e_ E:17-25,64-71,75-84,99-104
1rz0 d1rz0d_ D:17-25,64-71,75-84,99-104
1rz0 d1rz0g_ G:17-25,64-71,75-84,99-104
1rz1 d1rz1d_ D:17-25,64-71,75-84,99-104
1wgb d1wgba_ A:17-25,64-71,75-85,104-110
1rz1 d1rz1h_ H:17-25,64-71,75-84,99-104
1rz1 d1rz1a_ A:17-25,64-71,75-84,99-104
1rz1 d1rz1b_ B:17-25,64-71,75-84,99-104
1rz1 d1rz1c_ C:17-25,64-71,75-84,99-104
1rz1 d1rz1e_ E:17-25,64-71,75-84,99-104
1rz1 d1rz1g_ G:17-25,64-71,75-84,99-104
2nr4 d2nr4a1 A:28-38,73-80,82-93,108-113
1i0s d1i0sa_ A:13-21,60-68,72-83,101-106
1i0r d1i0ra_ A:13-21,60-68,72-82,101-106
2ptf d2ptfa1 A:30-43,80-87,89-99,111-116
2ptf d2ptfb1 B:30-43,80-87,89-99,111-116
8. b.40.1 Staphylococcal nuclease
OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
1joq d1joqa_ A:21-28,29-36,57-69,71-76
1rkn d1rkna_ A:21-27,32-36,61-70,71-77
2snm d2snma_ A:21-28,29-36,54-69,71-76
1aex d1aexa_ A:21-28,29-36,54-69,71-76
1a2u d1a2ua_ A:21-28,29-36,54-69,71-76
1kda d1kdaa_ A:21-28,29-36,54-69,71-76
1a2t d1a2ta_ A:21-28,29-36,54-69,71-76
3nuc d3nuca_ A:21-28,29-36,54-69,71-76
1sta d1staa_ A:21-28,29-36,52-69,71-76
1a3t d1a3ta_ A:21-28,29-36,52-69,71-76
2nuc d2nuca_ A:21-28,29-36,52-69,71-76
5nuc d5nuca_ A:21-28,29-36,54-69,71-76
1nuc d1nuca_ A:21-28,29-36,52-69,71-76
1a3v d1a3va_ A:21-28,29-36,52-69,71-76
1a3u d1a3ua_ A:21-28,29-36,52-69,71-76
1jok d1joka_ A:21-28,29-36,51-69,71-77
9. e.54.1 CbiD-like
CbiD-like 2 domains; (1) alpha+beta (res 1-192), a circularly permuted rS5 domain 2-like fold (scop_cf 54210); (2) alpha/beta with parallel beta-sheet of 4 strands, order 2134
1sr8 d1sr8a_ A:2-6,7-11,18-28,29-34
10. d.93.1 SH2 domain
SH2-like 3 layers: a/b/a; antiparallel beta-sheet of 5 strands is flaked by two helices
1tce d1tcea_ A:40-48,49-57,72-84,86-90
11. c.67.2 PhnH-like single domain protein of similar topology to the core domain of PLP-transferases
PLP-dependent transferase-like main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
2fsu d2fsua1 A:132-140,146-152,154-164,171-179
12. c.52.1 Restriction endonuclease-like
Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
1f1z d1f1zb2 B:43-51,52-60,60-74,75-82
1f1z d1f1za2 A:43-51,52-60,60-74,75-82
1f1z d1f1za2 A:43-51,52-60,60-74,125-133
1t0f d1t0fb2 B:43-51,52-60,60-74,75-82
1f1z d1f1zb2 B:43-51,52-60,60-74,125-133
1t0f d1t0fa2 A:43-51,52-60,60-74,75-82
2ot9 d2ot9a1 A:4-18,19-33,36-51,54-58
2g3w d2g3wa1 A:4-18,23-33,36-51,55-60
1t0f d1t0fa2 A:43-51,52-60,60-74,125-133
1t0f d1t0fb2 B:43-51,52-60,60-74,125-133
13. c.79.1 Tryptophan synthase beta subunit-like PLP-dependent enzymes
Tryptophan synthase beta subunit-like PLP-dependent enzymes consists of two similar domains related by pseudo dyad; duplication ! core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214
1pwe d1pwea_ A:203-207,208-212,227-240,240-247
14. c.62.1 vWA-like
vWA-like core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 321456; strand 3 is antiparallel to the rest
2ok5 d2ok5a1 A:170-174,191-195,410-419,426-431
15. e.26.1 Prismane protein-like
Prismane protein-like 3 domains: (1) spectrin repeat-like 3-helical bundle; (2 and 3) alpha/beta: Rossmann-fold topology
1jqk d1jqkc_ C:242-249,405-412,480-490,525-530
1jqk d1jqkd_ D:242-249,405-412,480-490,525-530
1jqk d1jqkf_ F:242-249,405-412,480-490,525-530
1jqk d1jqkb_ B:242-249,405-412,480-490,525-530
1jqk d1jqka_ A:242-249,405-412,480-490,525-530
1jqk d1jqke_ E:242-249,405-412,480-490,525-530
1oao d1oaob_ B:260-267,424-431,500-509,544-549
2z8y d2z8yb1 B:260-267,424-431,500-509,544-549
1su8 d1su8a_ A:238-245,400-407,476-485,520-525
1su6 d1su6a_ A:238-245,400-407,476-485,520-525
3b52 d3b52x1 X:238-245,400-407,476-485,520-525
1su7 d1su7a_ A:238-245,400-407,476-485,520-525
3b53 d3b53x1 X:238-245,400-407,476-485,520-525
3b51 d3b51x1 X:238-245,400-407,476-485,520-525
1suf d1sufa_ A:238-245,400-407,476-485,520-525
1mjg d1mjgb_ B:260-268,422-431,499-509,544-549
1mjg d1mjga_ A:260-268,422-431,499-509,544-549
1mjg d1mjgc_ C:260-268,422-431,499-509,544-549
1mjg d1mjgd_ D:260-268,422-431,499-509,544-549
16. c.1.7 NAD(P)-linked oxidoreductase
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1frb d1frba_ A:2-7,9-14,192-203,204-209
1ae4 d1ae4a_ A:4-9,11-16,193-204,205-210
1ah0 d1ah0a_ A:2-7,9-14,192-203,204-209
1ah4 d1ah4a_ A:2-7,9-14,192-203,204-209
1eko d1ekoa_ A:2-7,9-14,192-203,204-209
1vp5 d1vp5b_ B:4-9,11-16,171-182,183-188
1c9w d1c9wa_ A:2-7,9-14,192-203,204-209
1ah3 d1ah3a_ A:2-7,9-14,192-203,204-209
1vp5 d1vp5a_ A:4-9,11-16,171-182,183-188
2hvo d2hvoa1 A:2-7,9-14,192-203,204-209
2pfh d2pfha1 A:2-7,9-14,192-203,204-209
2duz d2duza1 A:2-7,9-14,192-203,204-209
1ef3 d1ef3a_ A:2-7,9-14,192-203,204-209
1x96 d1x96a_ A:2-7,9-14,192-203,204-209
2fzd d2fzda1 A:2-7,9-14,192-203,204-209
2ikh d2ikha1 A:2-7,9-14,192-203,204-209
2j8t d2j8ta1 A:2-7,9-14,192-203,204-209
2nvd d2nvda1 A:2-7,9-14,192-203,204-209
3bcj d3bcja1 A:2-7,9-14,192-203,204-209
2dux d2duxa1 A:2-7,9-14,192-203,204-209
2ikj d2ikja1 A:2-7,9-14,192-203,204-209
2qxw d2qxwa1 A:2-7,9-14,192-203,204-209
2fz8 d2fz8a1 A:2-7,9-14,192-203,204-209
2hv5 d2hv5a1 A:2-7,9-14,192-203,204-209
2hvn d2hvna1 A:2-7,9-14,192-203,204-209
1pwm d1pwma_ A:2-7,9-14,192-203,204-209
2ikg d2ikga1 A:2-7,9-14,192-203,204-209
1x98 d1x98a_ A:2-7,9-14,192-203,204-209
2f2k d2f2ka1 A:2-7,9-14,192-203,204-209
1z8a d1z8aa1 A:2-7,9-14,192-203,204-209
1z89 d1z89a1 A:2-7,9-14,192-203,204-209
1x97 d1x97a_ A:2-7,9-14,192-203,204-209
2iki d2ikia1 A:2-7,9-14,192-203,204-209
2fz9 d2fz9a1 A:2-7,9-14,192-203,204-209
2pdg d2pdga1 A:2-7,9-14,192-203,204-209
1mzr d1mzrb_ B:6-11,13-18,170-181,182-187
1sm9 d1sm9b_ B:6-11,13-18,200-211,212-217
2f38 d2f38a1 A:6-11,13-18,199-210,211-216
1sm9 d1sm9a_ A:6-11,13-18,200-211,212-217
1mi3 d1mi3c_ C:6-11,13-18,200-211,212-217
1mi3 d1mi3b_ B:6-11,13-18,200-211,212-217
1r38 d1r38b_ B:6-11,13-18,200-211,212-217
1jez d1jeza_ A:6-11,13-18,200-211,212-217
1r38 d1r38a_ A:6-11,13-18,200-211,212-217
1k8c d1k8cd_ D:6-11,13-18,200-211,212-217
1mi3 d1mi3a_ A:6-11,13-18,200-211,212-217
2r9r d2r9rg1 G:38-42,47-51,227-237,238-243
1exb d1exba_ A:38-42,47-51,227-237,238-243
3eau d3eaua1 A:38-42,47-51,227-237,238-243
2a79 d2a79a1 A:38-42,47-51,227-237,238-243
1qrq d1qrqa_ A:38-42,47-51,227-237,238-243
1qrq d1qrqb_ B:38-42,47-51,227-237,238-243
1qrq d1qrqc_ C:38-42,47-51,227-237,238-243
1qrq d1qrqd_ D:38-42,47-51,227-237,238-243
2r9r d2r9ra1 A:38-42,47-51,228-237,238-243
1frb d1frba_ A:2-7,9-14,243-256,257-261
1c9w d1c9wa_ A:2-7,9-14,243-256,257-261
17. d.261.1 Hypothetical protein PH1602
Hypothetical protein PH1602 complex alpha+beta fold; contains a region of similarity to the ferredoxin-like fold
1uc2 d1uc2b_ B:11-16,24-30,31-42,71-75
1uc2 d1uc2a_ A:11-16,24-30,31-42,71-75
1uc2 d1uc2b_ B:11-16,24-30,42-53,71-75
1uc2 d1uc2a_ A:11-16,24-30,42-53,71-75
18. d.58.28 Peptide methionine sulfoxide reductase common fold is elaborated with additional secondary structures !
Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
1ff3 d1ff3c_ C:26-30,31-35,51-63,64-74
19. c.1.4 FMN-linked oxidoreductases
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1tv5 d1tv5a1 A:208-213,214-219,510-521,523-527
1gt8 d1gt8a2 A:533-538,539-544,798-809,811-815
1h7x d1h7xa2 A:533-538,539-544,798-809,811-815
1gt8 d1gt8b2 B:533-538,539-544,798-809,811-815
1ofe d1ofea2 A:518-523,537-543,649-660,662-666
1ofe d1ofeb2 B:518-523,537-543,649-660,662-666
1ofd d1ofdb2 B:518-523,537-543,649-660,662-666
1p0n d1p0nb_ B:45-50,51-56,262-273,275-280
1ofd d1ofda2 A:518-523,538-543,649-660,662-666
1lco d1lcoa1 A:179-184,185-190,414-425,427-431
1p0n d1p0na_ A:45-50,51-56,262-273,275-280
1p0k d1p0kb_ B:45-50,51-56,262-273,275-280
1p0k d1p0ka_ A:45-50,51-56,262-273,275-280
1ldc d1ldca1 A:179-184,185-190,414-425,427-432
1gt8 d1gt8d2 D:533-538,539-544,798-809,811-816
2q3o d2q3oa1 A:12-19,20-25,324-335,338-342
1lco d1lcob_ B:179-184,185-190,414-425,427-432
1ldc d1ldcb_ B:179-184,185-190,414-425,427-432
1gte d1gtea2 A:533-538,539-544,798-809,811-816
1gte d1gtec2 C:533-538,539-544,798-809,811-816
1h7w d1h7wa2 A:533-538,539-544,798-809,811-816
1gte d1gted2 D:533-538,539-544,798-809,811-816
1h7w d1h7wd2 D:533-538,539-544,798-809,811-816
1gte d1gteb2 B:533-538,539-544,798-809,811-816
1h7x d1h7xc2 C:533-538,539-544,798-809,811-816
1h7w d1h7wc2 C:533-538,539-544,798-809,811-816
1h7x d1h7xd2 D:533-538,539-544,798-809,811-816
1h7x d1h7xb2 B:533-538,539-544,798-809,811-816
1h7w d1h7wb2 B:533-538,539-544,798-809,811-816
2q3r d2q3ra1 A:12-19,20-25,307-318,321-325
1gth d1gthb2 B:533-538,539-544,798-809,811-816
1gth d1gthc2 C:533-538,539-544,798-809,811-816
1gth d1gtha2 A:533-538,539-544,798-809,811-816
1gth d1gthd2 D:533-538,539-544,798-809,811-816
1qcw d1qcwa_ A:179-184,185-190,414-425,427-432
1ltd d1ltdb_ B:179-184,185-190,414-425,427-432
1qcw d1qcwb_ B:179-184,185-190,414-425,427-432
1ics d1icsa_ A:16-23,24-29,311-322,325-330
1ea0 d1ea0a2 A:522-527,541-547,651-662,664-668
2vdc d2vdcc2 C:522-527,541-547,651-662,664-668
2vdc d2vdca2 A:522-527,541-547,651-662,664-668
2vdc d2vdce2 E:522-527,541-547,651-662,664-668
1sze d1szea_ A:179-184,185-190,414-425,427-432
1ltd d1ltda1 A:179-184,185-190,414-425,427-432
1tb3 d1tb3e1 E:59-64,65-70,283-294,295-301
1tb3 d1tb3h1 H:59-64,65-70,283-294,296-301
1vji d1vjia_ A:12-19,20-25,307-318,321-326
1icq d1icqb_ B:16-23,24-29,311-322,325-330
1icp d1icpb_ B:16-23,24-29,311-322,325-330
1tb3 d1tb3g1 G:59-64,65-70,283-294,296-301
1tb3 d1tb3d1 D:59-64,65-70,283-294,296-301
1tb3 d1tb3c1 C:59-64,65-70,283-294,296-301
1tb3 d1tb3b1 B:59-64,65-70,283-294,296-301
1tb3 d1tb3a1 A:59-64,65-70,283-294,296-301
1p5b d1p5ba_ A:62-67,68-73,289-300,302-307
1tb3 d1tb3f1 F:59-64,65-70,283-294,296-301
2vdc d2vdcb2 B:522-527,541-547,651-662,664-668
2vdc d2vdcd2 D:522-527,541-547,651-662,664-668
2vdc d2vdcf2 F:522-527,541-547,651-662,664-668
1ea0 d1ea0b2 B:522-527,541-547,651-662,664-668
1p4c d1p4ca_ A:62-67,68-73,289-300,302-307
1szf d1szfb_ B:179-184,185-190,414-425,427-432
2q3o d2q3ob1 B:12-19,20-25,324-335,338-343
1sze d1szeb_ B:179-184,185-190,414-425,427-432
1szg d1szgb_ B:179-184,185-190,414-425,427-432
1huv d1huva_ A:62-67,68-73,289-300,302-307
1q45 d1q45a_ A:12-19,20-25,324-335,338-343
1fcb d1fcba1 A:179-184,185-190,414-425,427-432
1kbi d1kbia1 A:179-184,185-190,414-425,427-432
1kbi d1kbib_ B:179-184,185-190,414-425,427-432
1kbj d1kbjb_ B:179-184,185-190,414-425,427-432
1kbj d1kbja_ A:179-184,185-190,414-425,427-432
1szf d1szfa_ A:179-184,185-190,414-425,427-432
1icq d1icqa_ A:16-23,24-29,311-322,325-330
1ics d1icsb_ B:16-23,24-29,311-322,325-330
1szg d1szga_ A:179-184,185-190,414-425,427-432
1icp d1icpa_ A:16-23,24-29,311-322,325-330
2g5w d2g5wa1 A:12-19,20-25,324-335,338-343
2g5w d2g5wb1 B:12-19,20-25,324-335,338-343
2bsl d2bslb1 B:2-7,8-13,253-264,266-271
1gwj d1gwja_ A:11-18,19-24,309-320,323-328
1oyc d1oyca_ A:16-23,24-29,329-340,341-346
1z48 d1z48a1 A:5-12,13-18,288-299,302-307
2aba d2abaa1 A:5-12,13-18,304-315,318-323
1bwk d1bwka_ A:16-23,24-29,329-340,341-346
1o95 d1o95a1 A:9-16,17-22,302-313,316-320
1h60 d1h60a_ A:5-12,13-18,304-315,318-323
1oyb d1oyba_ A:16-23,24-29,329-340,341-346
2abb d2abba1 A:5-12,13-18,304-315,318-323
1h51 d1h51a_ A:5-12,13-18,304-315,318-323
1gvr d1gvra_ A:5-12,13-18,304-315,318-323
1h62 d1h62a_ A:5-12,13-18,304-315,318-323
1z41 d1z41a1 A:5-12,13-18,288-299,302-307
1bwl d1bwla_ A:16-23,24-29,329-340,341-346
1vys d1vysx_ X:5-12,13-18,304-315,318-323
1h61 d1h61a_ A:5-12,13-18,304-315,318-323
1h50 d1h50a_ A:5-12,13-18,304-315,318-323
1gvq d1gvqa_ A:5-12,13-18,304-315,318-323
1gvs d1gvsa_ A:5-12,13-18,304-315,318-323
1vyr d1vyra_ A:5-12,13-18,304-315,318-323
1oya d1oyaa_ A:16-23,24-29,329-340,341-346
1z42 d1z42a1 A:5-12,13-18,288-299,302-307
1h63 d1h63a_ A:5-12,13-18,304-315,318-323
1z48 d1z48b1 B:5-12,13-18,288-299,302-307
1gvo d1gvoa_ A:5-12,13-18,304-315,318-323
1k02 d1k02a_ A:16-23,24-29,329-340,341-346
1z44 d1z44a1 A:5-12,13-18,288-299,302-307
1z41 d1z41b1 B:5-12,13-18,288-299,302-307
1vyp d1vypx_ X:5-12,13-18,304-315,318-323
1z44 d1z44b1 B:5-12,13-18,288-299,302-307
1z42 d1z42b1 B:5-12,13-18,288-299,302-307
1al7 d1al7a_ A:60-65,66-71,290-301,302-308
1k03 d1k03a_ A:16-23,24-29,329-340,341-347
1gyl d1gyla_ A:60-65,66-70,290-301,304-308
20. d.4.1 His-Me finger endonucleases common motif contains conserved histidine residue and metal-binding site !
His-Me finger endonucleases core: (alpha)-beta-omega_loop-beta-alpha; embeded in larger different structures
2o3b d2o3ba1 A:120-125,146-151,151-173,174-186
2o3b d2o3ba1 A:120-125,146-151,151-173,222-230
1smn d1smnb_ B:85-90,110-115,115-137,184-192
1g8t d1g8tb_ B:86-90,110-115,115-137,184-192
1smn d1smna_ A:85-90,110-115,115-137,184-192
1ql0 d1ql0b_ B:86-90,110-115,115-137,184-192
1qae d1qaea_ A:85-90,110-115,115-137,184-192
1g8t d1g8ta_ A:85-90,110-115,115-137,184-192
1ql0 d1ql0a_ A:85-90,110-115,115-137,184-192
1qae d1qaeb_ B:86-90,110-115,115-137,184-192
21. d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) N-terminal residue provides two catalytic groups, nucleophile and proton donor !
Ntn hydrolase-like 4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
2i3o d2i3ob1 B:12-17,331-339,434-441,487-496
2i3o d2i3oa1 A:12-17,331-339,434-441,487-496
2i3o d2i3oc1 C:12-17,331-339,434-441,487-496
2i3o d2i3od1 D:12-17,331-339,434-441,487-496
22. d.131.1 DNA clamp
DNA clamp contains two helices and two beta sheets ! duplication: fold has internal pseudo two-fold symmetry
1jqj d1jqja1 A:32-39,65-71,71-82,103-110
1jqj d1jqjb1 B:32-39,65-71,71-82,103-110
1b77 d1b77a1 A:19-25,50-56,56-68,87-93
1b8h d1b8ha1 A:19-24,51-56,56-68,87-93
1czd d1czdc1 C:3019-3027,3051-3056,3056-3068,3087-3093
1czd d1czda1 A:1019-1026,1051-1056,1056-1068,1087-1093
1vyj d1vyjg2 G:157-163,202-208,208-219,244-252
1b77 d1b77b1 B:19-27,51-56,56-68,87-93
1czd d1czdb1 B:2019-2027,2051-2056,2056-2068,2087-2093
1b8h d1b8hc1 C:19-26,51-56,56-68,87-93
1b8h d1b8hb1 B:19-27,51-56,56-68,87-93
1rwz d1rwza2 A:151-158,186-194,194-206,231-240
1rxm d1rxma2 A:151-158,186-194,194-206,231-240
1vym d1vyma2 A:157-164,202-208,208-219,244-252
1sxj d1sxjh1 H:25-32,64-71,71-83,109-118
1ul1 d1ul1c2 C:157-164,202-208,208-219,244-252
23. e.7.1 Carbohydrate phosphatase
Carbohydrate phosphatase N-terminal domain is an alpha+beta, C-terminal domain is an alpha/beta with mixed beta-sheet
1lbw d1lbwb_ B:332-337,339-343,343-361,377-386
1lbz d1lbzb_ B:332-337,339-343,343-361,377-386
1lby d1lbyb_ B:332-337,339-343,343-358,377-386
1lby d1lbya_ A:32-37,39-43,43-61,76-86
1lbz d1lbza_ A:32-37,39-43,43-61,76-86
24. c.1.5 Inosine monophosphate dehydrogenase (IMPDH) The phosphate moiety of substrate binds in the 'common' phosphate-binding site !
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1vrd d1vrda1 A:26-31,33-38,339-350,352-356
1me7 d1me7a1 A:33-37,48-52,363-374,376-380
1mei d1meia1 A:33-37,48-52,363-374,376-380
1me8 d1me8a1 A:33-37,48-52,363-374,376-380
1meh d1meha1 A:33-37,48-52,363-374,376-380
2cu0 d2cu0a1 A:36-41,43-48,339-350,352-356
1mew d1mewa1 A:33-37,48-52,363-374,376-380
1me9 d1me9a1 A:33-37,48-52,363-374,376-380
1lrt d1lrta1 A:33-37,48-52,363-374,376-380
1ak5 d1ak5a1 A:33-37,48-52,363-374,376-380
1eep d1eepb_ B:31-35,39-43,267-278,280-285
1pvn d1pvna1 A:33-37,48-52,363-374,376-380
1zfj d1zfja1 A:34-38,42-46,348-359,361-365
1pvn d1pvnd1 D:33-37,48-52,363-374,376-380
1pvn d1pvnc1 C:33-37,48-52,363-374,376-380
1lrt d1lrtc1 C:33-37,48-52,363-374,376-380
1lrt d1lrtb1 B:33-37,48-52,363-374,376-380
1eep d1eepa_ A:31-35,39-43,267-278,280-285
1nfb d1nfba1 A:51-56,58-63,369-380,382-387
1nfb d1nfbb1 B:51-56,58-63,369-380,382-387
1nf7 d1nf7b1 B:51-56,58-63,369-380,382-387
1nf7 d1nf7a1 A:51-56,58-63,369-380,382-387
1jcn d1jcna1 A:51-56,58-63,369-380,382-387
1jcn d1jcnb1 B:51-56,58-63,369-380,382-387
25. c.1.8 (Trans)glycosidases
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1ghr d1ghra_ A:194-199,200-204,205-222,265-270
1aq0 d1aq0b_ B:195-199,200-204,205-222,265-270
1aq0 d1aq0a_ A:195-199,200-204,205-222,265-270
26. c.55.1 Actin-like ATPase domain duplication contains two domains of this fold !
Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
1xup d1xupx1 X:85-92,160-166,165-176,239-245
1nbw d1nbwa2 A:264-271,272-279,305-323,331-345
1nbw d1nbwc2 C:264-271,272-279,305-323,331-345
1e4g d1e4gt1 T:130-140,154-167,189-199,226-238
2d0p d2d0pa2 A:262-269,270-277,303-321,329-343
2d0o d2d0oc2 C:262-269,270-277,303-321,329-343
2d0o d2d0oa2 A:262-269,270-277,303-321,329-343
2d0p d2d0pc2 C:261-269,270-278,303-321,331-343
27. c.87.1 UDP-Glycosyltransferase/glycogen phosphorylase
UDP-Glycosyltransferase/glycogen phosphorylase consists of two non-similar domains with 3 layers (a/b/a) each ! domain 1: parallel beta-sheet of 7 strands, order 3214567 ! domain 2: parallel beta-sheet of 6 strands, order 321456
3cej d3cejb1 B:89-93,128-132,133-151,153-160
2iei d2ieia1 A:89-93,128-132,133-151,153-160
1wv0 d1wv0a1 A:89-93,128-132,133-151,153-160
2qln d2qlna1 A:89-93,128-132,133-151,153-160
2gj4 d2gj4a1 A:89-93,128-132,133-151,153-160
1z6q d1z6qa1 A:89-93,128-132,134-151,153-160
1wv1 d1wv1a1 A:89-93,128-132,133-151,153-160
28. d.136.1 Phospholipase D/nuclease
Phospholipase D/nuclease beta-alpha-beta-alpha-beta-alpha-beta(4)-alpha; mixed sheet: order 1765234
1xdo d1xdoa3 A:365-374,436-446,477-494,623-628
2o8r d2o8rb3 B:454-462,473-480,481-497,626-631
2o8r d2o8ra3 A:454-462,473-480,481-497,626-631
1v0t d1v0ta1 A:83-91,172-177,208-230,471-480
1v0y d1v0ya1 A:83-91,172-177,208-230,470-480
1v0s d1v0sa1 A:83-91,172-177,208-230,471-480
1xdo d1xdoa3 A:447-458,469-476,477-494,623-628
1v0w d1v0wa1 A:83-91,172-177,210-233,471-480
1v0u d1v0ua1 A:83-91,172-177,210-233,471-480
1f0i d1f0ia1 A:83-91,172-177,210-233,470-480
1xdo d1xdob3 B:365-374,436-446,477-494,621-628
1v0r d1v0ra1 A:83-91,172-177,210-233,471-480
1v0v d1v0va1 A:83-91,172-177,210-233,470-480
2o8r d2o8ra3 A:367-377,439-446,481-497,626-631
1v0t d1v0ta1 A:179-185,202-209,208-230,471-480
1v0y d1v0ya1 A:179-185,202-209,208-230,470-480
1v0u d1v0ua1 A:179-185,202-209,210-233,471-480
1v0r d1v0ra1 A:179-185,202-209,210-233,471-480
1v0v d1v0va1 A:179-185,202-209,210-233,470-480
1xdo d1xdob3 B:447-458,469-476,477-494,621-628
1v0s d1v0sa1 A:179-185,200-209,208-230,471-480
1v0w d1v0wa1 A:179-185,200-209,210-233,471-480
1f0i d1f0ia1 A:179-185,200-209,210-233,470-480
1xdp d1xdpa3 A:447-458,469-476,477-494,620-628
1xdp d1xdpb3 B:447-458,469-476,477-494,620-628
1xdp d1xdpa3 A:365-374,437-446,477-494,620-628
1xdp d1xdpb3 B:365-374,437-446,477-494,620-628
29. b.105.1 Penicillin-binding protein associated domain
Penicillin-binding protein associated domain sandwich; 6 strands in 2 sheets
1sdn d1sdna1 A:262-271,294-302,301-309,325-337
1hd8 d1hd8a1 A:262-271,294-302,301-309,325-337
30. d.58.4 Dimeric alpha+beta barrel dimerizes through the beta-sheet; forms beta-sheet barrel, closed (n=8, S=12); dimers may assemble in higher oligomers !
Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
2gvk d2gvka1 A:92-97,98-103,268-282,294-307
2hag d2haga1 A:87-91,92-96,263-277,289-302
31. d.58.7 RNA-binding domain, RBD
Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
2ghp d2ghpa1 A:66-75,80-88,129-141,143-149
2ghp d2ghpb2 B:66-75,79-88,129-141,144-149
2ghp d2ghpf2 F:66-75,79-88,129-141,144-149
32. b.40.4 Nucleic acid-binding proteins
OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
1b8a d1b8aa1 A:33-42,43-52,56-67,69-77
1bvs d1bvsa3 A:15-21,23-28,31-38,44-54
1bvs d1bvse3 E:15-21,23-28,31-38,44-54
1bvs d1bvsg3 G:15-21,23-28,31-38,44-54
1bvs d1bvsc3 C:15-21,23-28,31-38,44-54
1e22 d1e22a1 A:81-90,91-100,104-116,118-126
33. d.287.1 DNA methylase specificity domain
DNA methylase specificity domain comprises the N-terminal, double beta-helix like structure and C-terminal alpha-hairpin
2adm d2admb2 B:329-334,355-361,367-377,409-413
2adm d2adma2 A:329-334,355-361,367-377,409-413
34. d.75.1 tRNA-intron endonuclease N-terminal domain-like
MutS N-terminal domain-like beta(2)-alpha-beta(2)-alpha-beta(2); 2 layers, alpha/beta
1rlv d1rlvb4 B:156-161,177-182,182-193,231-237
1rlv d1rlva4 A:156-161,177-182,182-193,231-237
1r11 d1r11a4 A:156-161,177-182,182-193,231-237
1a79 d1a79a2 A:17-22,41-46,46-57,99-106
1r11 d1r11b4 B:156-161,177-182,182-193,231-237
1a79 d1a79c2 C:17-22,41-46,46-57,99-106
2gjw d2gjwc4 C:158-163,179-184,184-195,233-239
2gjw d2gjwb4 B:158-163,179-184,184-195,233-239
1rlv d1rlvb3 B:6-11,26-31,31-42,80-84
1rlv d1rlva3 A:6-11,26-31,31-42,80-84
1r11 d1r11a3 A:6-11,26-31,31-42,80-84
2gjw d2gjwa4 A:159-164,180-185,185-196,234-240
2gjw d2gjwd4 D:159-164,180-185,185-196,234-240
1r11 d1r11b3 B:6-11,26-31,31-42,80-84
1a79 d1a79b2 B:17-22,41-46,46-57,101-106
1a79 d1a79d2 D:17-22,41-46,46-57,101-106
2gjw d2gjwb3 B:8-13,28-33,33-44,82-86
2gjw d2gjwc3 C:8-13,28-33,33-44,82-86
35. b.53.1 Ribosomal protein L25-like
Ribosomal protein L25-like barrel, closed; n=6, S=10; complex topology
2zjq d2zjqs1 S:18-26,27-35,35-47,53-57
2zjr d2zjrs1 S:18-26,27-35,35-47,53-57
36. b.168.1 HisI-like
HisI-like pseudo barrel, capped by an alpha-helix; contains a beta-triangle structure on one side; some topological similarity to the Ribosomal protein L25-like fold (scop_cf 50714) and the N-terminal domain of Glutamine synthetase (scop_sf 54368)
1zps d1zpsa1 A:23-32,33-43,43-54,56-62
1zps d1zpsb1 B:23-32,33-43,43-54,56-62
37. b.30.5 Galactose mutarotase-like probable carbohydrate-binding domain in enzymes acting on sugars !
Supersandwich sandwich; 18 strands in 2 sheets
1lur d1lurb_ B:2014-2021,2022-2033,2046-2053,2276-2280
2brv d2brvx3 X:741-747,790-800,802-814,823-831
1n7r d1n7ra3 A:740-747,791-800,802-814,823-831
1n7q d1n7qa3 A:740-747,791-800,802-814,823-831
1ojo d1ojoa3 A:740-747,791-800,802-814,823-831
1n7p d1n7pa3 A:740-747,791-800,802-814,823-831
1c82 d1c82a3 A:740-747,791-800,802-814,823-831
1n7n d1n7na3 A:740-747,791-800,802-814,823-831
1n7o d1n7oa3 A:740-747,791-800,802-814,823-831
1ojn d1ojna3 A:740-747,791-800,802-814,823-831
1f9g d1f9ga3 A:740-747,791-800,802-814,823-831
2brp d2brpa3 A:740-747,791-800,802-814,823-831
1w3y d1w3ya3 A:740-747,791-800,802-814,823-831
1egu d1egua3 A:740-747,791-800,802-814,823-831
1loh d1loha3 A:740-747,791-800,802-814,823-831
1lxk d1lxka3 A:740-747,791-800,802-814,823-831
2brw d2brwb3 B:740-747,790-800,802-814,823-831
2brw d2brwa3 A:740-747,790-800,802-814,823-831
1ojp d1ojpa3 A:740-747,790-800,802-814,823-831
1ojm d1ojma3 A:740-747,790-800,802-814,823-831
38. c.80.1 SIS domain
SIS domain 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 21345
1x9i d1x9ib_ B:23-28,29-34,92-106,107-115
1tzb d1tzbb_ B:23-28,29-34,92-106,108-114
1x9h d1x9hb_ B:23-28,29-34,92-106,108-115
39. c.1.21 Dihydropteroate synthetase-like
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1tx0 d1tx0a_ A:6-10,11-15,104-115,117-122
1tws d1twsb_ B:6-10,11-15,104-115,117-122
1tws d1twsa_ A:6-10,11-15,104-115,117-122
1tww d1twwa_ A:6-10,11-15,104-115,117-122
1tx2 d1tx2a_ A:6-10,11-15,104-115,117-122
1tww d1twwb_ B:6-10,11-15,104-115,117-122
1tx2 d1tx2b_ B:6-10,11-15,104-115,117-122
1twz d1twzb_ B:6-10,11-15,104-115,117-122
1twz d1twza_ A:6-10,11-15,104-115,117-122
40. d.18.1 ssDNA-binding transcriptional regulator domain
ssDNA-binding transcriptional regulator domain helix-swapped dimer of beta(4)-alpha motifs
2nvn d2nvna1 A:23-29,30-36,36-58,85-94
2it9 d2it9d1 D:21-27,28-34,34-56,83-92
2it9 d2it9b1 B:21-27,28-34,34-59,83-95
2it9 d2it9c1 C:21-27,28-34,34-59,83-95
2it9 d2it9a1 A:21-27,28-34,34-60,83-97
41. b.88.1 Mss4-like duplication: tandem repeat of two similar structural motifs !
Mss4-like complex fold made of several coiled beta-sheets
2hr9 d2hr9a1 A:35-39,66-70,70-77,77-81
42. e.13.1 DNA primase core
DNA primase core 2 domains: (1) alpha+beta; (2) toprim alpha/beta
1eqn d1eqnb_ B:201-211,213-222,266-277,280-285
1q57 d1q57a2 A:103-114,116-126,158-168,174-179
1nui d1nuib1 B:103-114,116-126,158-170,174-179
43. d.129.3 Bet v1-like contains a single copy of this fold with a alpha-beta2 insertion after the first helix; there is a cavity between the beta-sheet and the long C-terminal helix !
TBP-like beta-alpha-beta(4)-alpha
1wql d1wqla2 A:164-170,171-177,191-201,336-346
1uli d1ulie2 E:154-160,161-167,178-193,327-336
44. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1nht d1nhta_ A:268-273,305-310,311-323,367-377
2gcq d2gcqa1 A:268-273,305-310,311-323,367-377
1hoo d1hooa_ A:268-274,304-310,311-323,367-377
1dj2 d1dj2b_ B:286-291,323-328,329-341,386-395
1gin d1gina_ A:268-273,305-310,311-323,367-377
1lon d1lona_ A:300-305,337-342,343-355,399-408
1iwe d1iwea_ A:300-305,337-342,343-355,399-408
1loo d1looa_ A:300-305,337-342,343-355,399-408
1mf0 d1mf0a_ A:300-305,337-342,343-355,399-408
1ksz d1ksza_ A:268-273,305-310,311-323,367-377
1p9b d1p9ba_ A:276-281,313-318,319-331,379-388
1mez d1meza_ A:300-305,337-342,343-355,399-408
1lny d1lnya_ A:300-305,337-342,343-355,399-408
1j4b d1j4ba_ A:300-305,337-342,343-355,399-408
2dgn d2dgna1 A:300-305,337-342,343-355,399-408
1lny d1lnyb_ B:300-305,337-342,343-355,399-408
1cib d1ciba_ A:268-273,305-310,311-323,367-378
1cg3 d1cg3a_ A:268-273,305-310,311-323,367-378
1iwe d1iweb_ B:300-305,337-342,343-355,399-408
1gim d1gima_ A:268-273,305-310,311-323,367-378
1cg4 d1cg4a_ A:268-273,305-310,311-323,367-378
1ade d1adeb_ B:268-273,305-310,311-323,367-378
1hop d1hopb_ B:269-273,305-309,311-323,368-377
1juy d1juya_ A:268-273,305-310,311-323,367-378
1son d1sona_ A:268-273,305-310,311-323,367-378
1qf4 d1qf4a_ A:268-273,305-310,311-323,367-378
1ch8 d1ch8a_ A:268-273,305-310,311-323,367-379
1hoo d1hoob_ B:268-273,305-310,311-323,367-378
1kkf d1kkfa_ A:268-273,305-310,311-323,367-379
1cg1 d1cg1a_ A:268-273,305-310,311-323,367-379
1cg0 d1cg0a_ A:268-273,305-310,311-323,367-379
1soo d1sooa_ A:268-273,305-310,311-323,367-379
1qf5 d1qf5a_ A:268-273,305-310,311-323,367-379
1kkb d1kkba_ A:268-273,305-310,311-323,367-380
1kjx d1kjxa_ A:268-273,305-310,311-323,367-380
1hon d1honb_ B:268-273,305-310,311-323,367-380
1adi d1adib_ B:269-273,305-309,311-323,367-380
1dj3 d1dj3b_ B:285-290,322-327,328-340,385-397
1dj3 d1dj3a_ A:285-290,322-327,328-340,385-397
1hop d1hopa_ A:269-273,305-309,311-323,367-380
45. a.93.1 Heme-dependent peroxidases
Heme-dependent peroxidases multihelical; consists of two all-alpha domains
1b85 d1b85a_ A:-1-4,6-11,11-30,127-131
1b82 d1b82a_ A:-1-4,6-11,11-30,127-131
1b80 d1b80a_ A:-1-4,6-11,11-30,127-131
46. c.45.1 (Phosphotyrosine protein) phosphatases II share with the family I the common active site structure with a circularly permuted topology !
(Phosphotyrosine protein) phosphatases II core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 1423
1zvr d1zvra2 A:224-229,243-248,251-263,266-276
1zsq d1zsqa2 A:224-229,243-248,251-263,266-276
47. e.3.1 beta-lactamase/transpeptidase-like
beta-lactamase/transpeptidase-like contains a cluster of helices and an alpha+beta sandwich
1xp4 d1xp4a2 A:30-38,39-47,276-294,325-333
1xp4 d1xp4b2 B:30-38,39-47,276-294,325-333
1xp4 d1xp4d2 D:30-38,39-47,276-294,325-333
1xp4 d1xp4c2 C:30-38,39-47,276-294,325-333
1tvf d1tvfb2 B:50-57,59-66,296-316,334-344
1tvf d1tvfa2 A:50-57,59-66,296-316,334-344
1xp4 d1xp4a2 A:247-257,258-267,276-294,325-333
1xp4 d1xp4b2 B:247-257,258-269,276-294,325-333
48. e.23.1 Acetyl-CoA synthetase-like
Acetyl-CoA synthetase-like 4 domains: (1&2) duplication: share the same alpha/beta fold; (3) beta-barrel; (4) alpha+beta
1ult d1ultb_ B:417-424,426-434,446-458,462-468
49. b.59.1 XRCC4, N-terminal domain an HTH motif connects strands 4 and 5 !
XRCC4, N-terminal domain barrel, closed; n=7, S=10; order: 1234765; strands 1 and 5 are parallel to each other
1fu1 d1fu1b1 B:431-439,440-448,462-476,492-502
50. d.283.1 Putative modulator of DNA gyrase, PmbA/TldD
Putative modulator of DNA gyrase, PmbA/TldD consists of two different alpha+beta domains; d1: [duplication of alpha-beta(3)-alpha motif; 2 layers: a/b; antiparallel beta-sheet, order: 321456; strands 1, 2, 4 and 5 are twice longer than other secondary structures]; d2 [ complex fold; contains beta-barrel (n=5, S=10)]
1vl4 d1vl4b_ B:158-178,180-191,197-213,351-361
1vl4 d1vl4a_ A:158-178,180-191,197-213,351-361
1vpb d1vpba_ A:168-189,191-203,210-227,357-367
51. c.52.4 TBP-interacting protein-like contains extra C-terminal alpha+beta domain of complex fold with an embeded C2H2 zinc-finger
Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
2czr d2czra1 A:29-37,38-47,85-101,112-122
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 85 (enumeration index: query18) of S4
3h7u A:6-11,13-18,189-200,201-206
3qq7 A:53-62,64-74,85-93,149-157
2yr6 A:375-381,386-394,411-423,428-433
2d37 A:16-24,63-70,72-82,99-104
3ism B:151-156,177-182,182-206,255-266
3ism A:151-156,177-182,182-206,255-266
3sr2 F:30-39,40-49,62-76,93-102
3liu A:63-72,101-110,112-122,131-135
3m4h A:2-7,9-14,192-203,204-209
3i01 B:260-267,424-431,500-509,544-549
3p1z L:17-22,53-57,57-68,110-116
3p1z B:17-22,53-57,57-68,110-116
3p1z H:17-22,53-57,57-68,110-116
3p1z D:17-22,53-57,57-68,110-116
3lut A:38-42,47-51,227-237,238-243
3lut A:38-42,47-51,227-237,317-323
3l67 A:4-11,12-17,306-317,320-324
2xsh E:163-169,170-176,190-200,337-346
2xsh A:163-169,170-176,190-200,337-346
2xsh I:163-169,170-176,190-200,337-346
2xsh G:163-169,170-176,190-200,337-346
2xsh K:163-169,170-176,190-200,337-346
2xsh C:163-169,170-176,190-200,337-346
2epg B:9-15,21-27,40-52,70-74
2epg A:9-15,21-27,40-52,70-74
3r7t A:264-269,301-306,307-319,360-372
3g8v A:188-192,221-228,228-235,249-256
3qns A:88-93,94-99,267-281,293-306
3o3r B:3-8,10-15,193-204,205-210
3o3r A:3-8,10-15,193-204,205-210
3o3r B:3-8,10-15,244-257,258-262
3o3r A:3-8,10-15,244-257,258-262
2gq9 A:7-12,13-18,303-314,317-321
3hum A:50-57,59-66,296-316,334-344
3hum B:47-57,59-66,296-316,334-344
3h26 B:6-10,11-15,104-115,117-122
3h26 A:6-10,11-15,104-115,117-122
2djb A:28-33,34-39,39-51,51-55
3rnd A:16-23,24-29,329-340,341-346
2oaj A:803-816,820-832,857-864,870-877
3rx3 A:2-7,9-14,192-203,204-209
3lz3 A:2-7,9-14,192-203,204-209
3nfw A:22-30,69-76,80-90,106-111
3nfw C:22-30,69-76,80-90,106-111
3nfw D:22-30,69-76,77-90,106-111
3nfw B:22-30,69-76,80-90,106-111
3lep A:2-7,9-14,192-203,204-209
3h2a A:6-10,11-15,104-115,117-122
3h2a B:6-10,11-15,104-115,117-122
3k4x A:559-566,599-605,605-617,643-652
3mxg B:17-24,25-31,32-46,47-53
3mxg J:17-24,25-31,32-46,47-53
3mxg D:18-24,25-31,32-46,47-53
3mxg H:17-24,25-31,32-46,47-53
3mxg E:17-24,25-31,32-46,47-53
3mxg C:18-24,25-31,32-46,47-53
3mxg I:17-24,25-31,32-46,47-53
3mxg G:17-24,25-31,32-46,47-53
3mxg A:17-24,25-31,32-46,47-53
3mxg F:17-24,25-31,32-46,47-53
2xsc B:18-25,26-32,33-47,49-54
2xsc A:18-25,26-32,33-47,49-54
2xsc C:18-25,26-32,33-47,49-54
2xsc D:18-25,26-32,33-47,49-54
2xsc E:18-25,26-32,33-47,49-54
3l5m A:4-11,12-17,306-317,320-324
1ypf B:27-32,33-38,212-223,225-230
1ypf A:27-32,33-38,212-223,225-230
3g2d B:188-192,221-228,228-235,249-256
3mjy A:3-8,9-14,254-265,266-272
3mjy B:3-8,9-14,254-265,266-272
3rx2 A:2-7,9-14,192-203,204-209
2ykd A:144-157,158-172,186-196,203-212
1zvt B:641-649,684-693,710-718,735-742
3l2k A:91-97,103-109,109-122,311-320
3hsi A:48-55,141-146,177-194,386-397
3hsi A:147-152,172-177,177-194,386-397
2frx C:354-361,362-369,368-375,380-384
2frx B:354-361,362-369,368-375,380-384
2frx A:354-361,362-369,368-375,380-384
3gzy A:163-169,170-176,190-200,334-344
3eb4 A:38-42,47-51,227-237,238-243
3tsd B:32-36,40-44,346-357,359-363
3tsd A:32-36,40-44,346-357,359-363
2qr6 A:38-43,44-49,269-280,282-287
3nko A:671-676,696-701,701-715,783-793
2yuj A:63-70,71-78,92-100,152-160
2oq2 C:3-7,9-13,130-151,153-157
2oq2 B:3-7,9-13,130-151,153-157
2oq2 D:3-7,9-13,130-151,153-157
2oq2 A:3-7,9-13,130-151,153-157
2z0l C:186-194,237-244,244-257,287-296
2z0l D:186-194,237-244,244-257,287-296
2z0l B:186-194,237-244,244-257,287-295
1ye6 B:6-11,13-18,200-211,212-217
1ye6 A:6-11,13-18,200-211,212-217
1ye6 C:6-11,13-18,200-211,212-217
3hid A:269-274,306-311,312-324,368-379
3mhu A:3-8,9-14,254-265,266-272
3mhu B:3-8,9-14,254-265,266-272
3hgr B:16-23,24-29,311-322,325-330
3hgr A:16-23,24-29,311-322,325-330
3gz3 B:3-8,9-14,254-265,266-272
3gz3 A:3-8,9-14,254-265,266-272
2xgr A:118-122,136-140,159-175,177-187
3aty B:9-14,15-20,317-328,331-336
3aty A:9-14,15-20,317-328,331-336
3ayl A:375-381,386-394,411-423,428-433
2agt A:2-7,9-14,192-203,204-209
3h45 D:85-93,160-165,165-176,216-220
3h45 D:85-93,160-165,165-176,180-184
2pdy A:2-7,9-14,192-203,204-209
2xr9 A:675-680,700-705,705-719,787-797
2pd9 A:2-7,9-14,192-203,204-209
3a1j B:179-186,227-233,233-245,269-278
3pg6 B:630-645,651-667,667-684,699-704
3pg6 C:630-645,651-667,667-684,699-704
3pg6 D:630-645,651-667,667-684,699-704
3pg6 A:630-645,651-667,667-684,699-704
3rx4 A:2-7,9-14,192-203,204-209
3lbo A:2-7,9-14,192-203,204-209
2h0d A:28-33,34-39,39-51,51-55
3bcz D:94-99,100-105,130-145,151-160
3bcz A:94-99,100-105,130-145,151-160
2of1 A:21-28,29-36,52-69,71-76
3pjp B:1288-1296,1300-1310,1330-1352,1404-1413
3pjp A:1288-1296,1300-1310,1330-1352,1404-1413
3nen A:33-42,43-52,56-67,69-77
3n14 A:4-11,12-17,306-317,320-324
3h23 A:6-10,11-15,104-115,117-122
3e5s B:21-28,29-36,54-69,71-76
3e5s A:21-28,29-36,54-69,71-76
3b3d B:7-12,14-19,176-187,188-193
2fgt A:205-213,217-223,387-398,405-415
3f03 K:5-12,13-18,304-315,318-323
3p67 A:5-12,13-18,304-315,318-323
3p84 A:5-12,13-18,304-315,318-323
2v40 A:299-304,336-341,342-354,398-407
2f0m A:21-28,29-36,52-69,71-76
3gka B:12-19,20-25,297-308,311-316
3gka A:12-19,20-25,297-308,311-315
3ita C:258-263,293-298,297-304,321-333
3ita B:258-264,292-298,297-304,321-333
3ita D:258-264,292-298,297-304,321-333
3hf3 D:4-11,12-17,299-310,313-318
3hf3 B:4-11,12-17,299-310,313-318
3hf3 A:4-11,12-17,299-310,313-318
3hf3 C:4-11,12-17,299-310,313-318
3ic1 B:172-190,282-296,326-335,336-343
3owv B:156-161,182-187,200-215,248-256
3owv B:156-161,182-187,200-215,217-226
3owv A:156-161,182-187,200-215,248-256
3owv A:156-161,182-187,200-215,215-226
1zsx A:0-28,33-37,213-223,303-309
1zsx A:0-28,33-37,213-223,224-229
3h22 A:6-10,11-15,104-115,117-122
1z9a B:6-11,13-18,200-211,212-217
1z9a C:6-11,13-18,200-211,212-217
3tv9 A:177-197,200-211,218-234,368-378
2p5n B:6-11,13-18,199-210,211-218
3khj B:31-36,38-43,257-268,270-275
3khj H:31-36,38-43,257-268,270-275
3khj D:31-36,38-43,257-268,270-275
3khj E:31-36,38-43,257-268,270-274
3khj A:31-36,38-43,257-268,270-274
3khj C:31-36,38-43,257-268,270-274
3ue9 C:278-283,323-328,329-341,385-394
3ue9 D:278-283,323-328,329-341,385-394
3ue9 B:278-283,323-328,329-341,385-397
3ue9 A:278-283,323-328,329-341,385-395
2gqa A:7-12,13-18,303-314,317-321
3p16 D:44-51,76-82,82-93,113-120
3p16 C:44-51,76-82,82-93,113-120
3p16 E:44-50,76-82,82-94,113-120
3p16 B:166-173,200-207,207-219,246-253
3p16 A:44-51,76-82,82-93,113-120
3rh7 D:22-30,70-77,81-91,107-112
3rh7 E:22-30,70-77,81-91,107-112
3rh7 B:22-30,70-77,81-91,107-112
3rh7 A:22-30,70-77,81-91,107-112
3rh7 C:22-30,70-77,81-91,107-112
3rh7 F:22-30,70-77,81-91,107-112
3i0p A:138-150,159-171,217-228,229-233
3czb B:152-156,205-210,210-221,221-228
3czb A:152-156,205-210,210-221,221-228
3bvz A:47-54,62-68,70-80,81-87
3kg7 A:970-974,975-979,1131-1142,1154-1163
3kg7 D:970-974,975-979,1079-1091,1154-1163
3kg7 A:970-974,975-979,1079-1091,1154-1163
3kg7 D:970-974,975-979,1131-1142,1154-1163
3h2t B:356-364,372-379,432-454,637-641
2nli B:76-81,82-87,301-312,314-319
2nli A:76-81,82-87,301-312,314-319
3hun B:47-57,59-66,296-316,334-344
3hun A:50-57,59-66,296-316,334-344
2pqv B:12-23,41-45,50-64,104-109
2pqv A:12-23,41-45,50-64,104-109
3isz B:172-190,282-296,326-335,336-343
3isz A:172-190,282-296,326-335,336-343
3tiw A:53-62,64-74,85-93,149-156
3erp B:14-18,23-27,205-215,216-221
3erp A:14-18,23-27,205-215,216-221
2xso M:163-169,170-176,190-200,337-346
2xso G:163-169,170-176,190-200,337-346
2xso S:163-169,170-176,190-200,337-346
2xso E:163-169,170-176,190-200,337-346
2xso W:163-169,170-176,190-200,337-346
2xso I:163-169,170-176,190-202,337-346
2xso O:163-169,170-176,190-200,337-346
2xso C:163-169,170-176,190-200,337-346
2xso Q:163-169,170-176,190-200,337-346
2xso K:163-169,170-176,187-202,336-346
2j6x G:76-81,82-87,301-312,314-319
2j6x F:76-81,82-87,301-312,314-319
2j6x E:76-81,82-87,301-312,314-319
2j6x B:76-81,82-87,301-312,314-319
2j6x D:76-81,82-87,301-312,314-319
2j6x A:76-81,82-87,301-312,314-319
2j6x C:76-81,82-87,301-312,314-319
2j6x H:76-81,82-87,301-312,314-319
3qtd B:176-196,199-210,217-233,367-377
3qtd D:176-197,198-210,217-233,367-377
3qtd C:176-197,198-210,217-233,367-377
3qtd A:176-196,199-210,217-233,367-377
1zc1 A:68-75,76-83,97-105,159-165
3pet A:34-40,65-72,72-80,86-92
3pet B:34-40,65-72,72-80,86-92
3ayj A:375-381,386-394,411-423,428-433
3bvg A:47-53,62-68,70-80,81-87
3erw E:36-42,44-50,100-112,116-121
3erw B:36-42,44-50,100-112,116-120
3erw F:36-42,44-50,100-112,116-121
3erw A:36-42,44-50,100-112,116-121
3erw C:36-42,44-50,100-112,116-120
3erw G:36-42,44-50,100-112,116-121
3erw D:36-42,44-50,100-112,116-121
2e77 A:76-81,82-87,301-312,314-319
2e77 C:2076-2081,2082-2087,2301-2312,2314-2319
2e77 B:1076-1081,1082-1087,1301-1312,1314-1319
2e77 D:3076-3081,3082-3087,3301-3312,3314-3319
3dop A:8-13,15-20,202-213,214-219
3ozx B:279-288,290-299,299-310,310-314
3ozx A:279-288,290-299,299-310,310-314
2a85 A:62-67,68-73,289-300,301-307
2a7n A:62-67,68-73,289-300,302-307
1ye4 B:6-11,13-18,200-211,212-217
1ye4 A:6-11,13-18,200-211,212-217
3i65 A:208-213,214-219,510-521,523-527
3hgo B:12-19,20-25,323-334,337-342
3hgo A:12-19,20-25,323-334,337-342
3tx9 A:16-23,24-29,329-340,341-346
3i39 X:238-245,400-407,476-485,520-525
3bvm A:47-55,62-68,70-80,81-87
3ggr B:179-186,228-234,234-245,269-278
3l68 A:4-11,12-17,306-317,320-324
2zfa A:76-81,82-87,301-312,314-319
2zfa B:76-81,82-87,301-312,314-319
3hrg A:104-113,114-123,141-158,179-189
3bd0 D:94-99,100-105,130-145,151-160
3bd0 B:94-99,100-105,130-145,151-160
3bd0 A:94-99,100-105,130-145,151-160
3bd0 C:94-99,100-105,130-145,151-160
3l66 A:4-11,12-17,306-317,320-324
1vbj B:5-10,12-17,170-181,182-187
1vbj A:5-10,12-17,170-181,182-187
3j04 D:403-410,411-418,419-451,632-640
3j04 A:403-410,411-418,419-451,632-640
2zyz D:8-13,47-51,51-62,105-111
2zyz B:8-13,47-51,51-62,105-111
2vpd A:353-360,364-368,375-386,387-391
2vpd C:356-360,364-368,375-386,387-391
3bpk B:27-35,79-86,87-100,123-127
3bpk A:27-35,79-86,87-100,123-127
3gr7 B:5-12,13-18,288-299,302-307
3gr7 A:5-12,13-18,288-299,302-307
3nkn A:671-676,696-701,701-715,783-793
2avt B:164-171,198-204,204-216,237-244
2avt B:33-40,72-78,78-89,110-117
2avt A:289-296,324-330,330-342,367-374
2avt B:289-296,324-330,330-342,367-374
2avt A:164-171,198-204,204-216,237-244
2avt A:33-40,71-78,78-89,110-117
3mwy W:286-291,301-312,433-449,452-456
3hgu A:91-97,103-109,109-127,309-320
3hgu B:91-97,103-109,109-127,309-320
2vqp A:140-153,154-168,182-192,199-208
2ckl B:61-66,67-72,72-83,85-89
2ckl A:28-33,34-39,39-50,51-55
3n19 B:4-11,12-17,306-317,320-324
3n19 D:4-11,12-17,306-317,320-324
2ixs B:160-165,169-174,176-195,197-204
2ixs A:160-165,169-174,176-195,197-204
2r14 A:11-18,19-24,309-320,323-328
3h3y J:356-364,372-379,432-454,637-641
3h3y L:356-364,372-379,432-454,637-641
3h3y H:356-364,372-379,432-454,637-641
3h3y F:356-364,372-379,432-454,637-641
3h3y B:356-364,372-379,432-454,637-641
3h3y D:356-364,372-379,432-454,637-641
2qck A:23-31,70-77,78-91,106-111
3ap2 A:51-55,61-65,129-150,153-160
3eb3 A:38-42,47-51,227-237,238-243
3h3w D:356-364,372-379,432-454,637-641
3h3w J:356-364,372-379,432-454,637-641
3h3w H:356-364,372-379,432-454,637-641
3h3w B:356-364,372-379,432-454,637-641
3h3w F:356-364,372-379,432-454,637-641
3h3w L:356-364,372-379,432-454,637-641
3gzx A:163-169,170-176,190-200,335-344
3ayi A:375-381,386-394,411-423,428-433
2a7p A:62-67,68-73,289-300,302-307
3k44 D:65-76,78-86,86-108,142-153
3k44 A:65-76,78-86,86-108,142-153
3k44 C:65-76,78-86,86-108,142-153
3k44 B:65-76,78-86,86-108,142-153
3hu2 D:53-62,64-74,85-93,149-157
3hu2 C:53-62,64-74,85-93,149-157
3hu2 E:53-62,64-74,85-93,149-157
3hu2 B:53-62,64-74,85-93,149-157
3hu2 A:55-62,64-74,85-93,149-157
3hu2 F:53-62,64-74,85-93,149-157
3krz B:4-11,12-17,288-299,302-307
3krz A:4-11,12-17,288-299,302-307
3krz C:4-11,12-17,288-299,302-307
3krz D:4-11,12-17,288-299,302-307
3hgj C:4-11,12-17,299-310,313-318
3hgj B:4-11,12-17,299-310,313-318
3hgj D:4-11,12-17,299-310,313-318
3hgj A:4-11,12-17,299-310,313-318
3hs0 D:170-174,191-195,410-419,426-430
3kru C:4-11,12-17,288-299,302-307
3kru D:4-11,12-17,288-299,302-307
3kru B:4-11,12-17,288-299,302-307
3kru A:4-11,12-17,288-299,302-307
3l65 A:4-11,12-17,306-317,320-324
2pdk A:2-7,9-14,192-203,204-209
2k2e A:20-25,26-30,122-137,139-147
3g0r B:188-192,221-228,228-235,249-256
3h2e B:6-10,11-15,104-115,117-122
3h2e A:6-10,11-15,104-115,117-122
3bk7 A:282-290,293-302,302-313,313-317
2d5m A:16-24,64-70,72-86,108-112
3h24 A:6-10,11-15,104-115,117-122
3g4t A:188-192,221-228,228-235,249-256
3ite B:404-411,413-421,433-446,448-456
2cv8 B:8-13,45-49,49-60,102-108
2cv8 A:8-13,45-49,49-60,102-108
3c4e D:77-81,82-87,87-97,105-113
2pdi A:2-7,9-14,192-203,204-209
3q67 A:2-7,9-14,192-203,204-209
3q67 B:2-7,9-14,192-203,204-209
3cf2 A:55-62,64-74,85-93,149-157
3cf2 B:55-62,64-74,85-93,149-157
3cf2 D:55-62,64-74,85-93,149-157
3cf2 C:55-62,64-74,85-93,149-157
2gm2 A:20-25,26-30,98-113,115-122
2yfi E:163-169,170-176,187-202,337-346
2yfi I:163-169,170-176,190-200,337-346
2yfi G:163-169,170-176,190-200,337-346
2yfi C:163-169,170-176,190-200,337-346
2yfi K:163-169,170-176,190-200,337-346
3p62 A:5-12,13-18,304-315,318-323
2v7b A:411-418,420-428,440-452,453-464
2v7b B:411-418,420-428,440-452,453-465
3sy6 B:53-60,93-99,103-114,114-120
3sy6 A:53-60,93-99,103-114,114-120
3h2f A:6-10,11-15,104-115,117-122
2ze9 A:177-183,200-207,206-228,464-474
2ze9 A:81-89,170-175,206-228,464-474
2x1e C:103-111,112-123,262-279,291-295
2x1e A:103-111,112-123,262-279,291-295
3p74 A:5-12,13-18,304-315,318-323
2pdl A:2-7,9-14,192-203,204-209
3itb C:258-263,293-298,297-304,321-333
3itb A:258-264,292-298,297-304,321-333
3itb B:258-264,292-298,297-304,321-333
3p91 A:159-166,202-208,208-219,243-251
3h2o A:6-10,11-15,104-115,117-122
3h2o B:6-10,11-15,104-115,117-122
3p80 A:5-12,13-18,304-315,318-323
3tix D:518-528,529-540,549-560,642-650
3tix B:518-528,529-540,549-560,642-650
2d36 A:16-24,63-70,72-82,99-104
2bzn A:33-40,41-46,197-213,214-220
2bzn E:33-40,41-46,197-213,214-220
3nkq A:671-676,696-701,701-715,783-793
3mud A:31-39,40-48,62-76,92-102
3mud B:31-39,40-48,62-76,92-102
3cpk A:20-25,26-30,122-137,139-147
3q65 A:2-7,9-14,192-203,204-209
3q65 B:2-7,9-14,192-203,204-209
2hs8 B:12-19,20-25,323-334,337-342
2hs8 A:12-19,20-25,323-334,337-342
1xgd A:2-7,9-14,192-203,204-210
3nkr A:671-676,696-701,701-715,783-793
3kft A:5-12,13-18,304-315,318-323
3kft B:5-12,13-18,304-315,318-323
2c6q F:33-40,41-46,197-213,214-219
2c6q A:33-40,41-46,197-213,214-220
2pdw A:2-7,9-14,192-203,204-209
3oix D:4-9,10-15,251-263,265-270
3oix B:4-9,10-15,251-263,265-270
3oix A:4-9,10-15,251-263,265-270
3oix C:4-9,10-15,251-263,265-270
3t0p B:32-38,63-70,70-81,102-109
3t0p A:32-38,63-70,70-81,102-109
2h8x A:4-11,12-17,306-317,320-324
2hsa B:12-19,20-25,323-334,337-341
2hsa A:12-19,20-25,323-334,337-342
3f41 A:433-438,439-446,456-472,473-477
3h2m A:6-10,11-15,104-115,117-122
3h2m B:6-10,11-15,104-115,117-122
3i6r A:208-213,214-219,510-521,523-527
2h8z A:4-11,12-17,306-317,320-324
2awa A:33-39,72-78,78-89,110-117
1zgd A:7-12,17-22,197-208,209-214
3p81 A:5-12,13-18,304-315,318-323
3r2g A:30-34,39-43,210-221,223-227
2gq8 A:7-12,13-18,303-314,317-321
3p7y A:5-12,13-18,304-315,318-323
3s30 A:136-143,144-153,165-174,215-220
3cgz A:337-341,371-375,376-395,469-479
2du2 D:3076-3081,3082-3087,3301-3312,3314-3319
2du2 A:76-81,82-87,301-312,314-319
2du2 C:2076-2081,2082-2087,2301-2312,2314-2319
2du2 B:1076-1081,1082-1087,1301-1312,1314-1319
2pdm A:2-7,9-14,192-203,204-209
3i68 A:208-213,214-219,510-521,523-527
3gr8 B:5-12,13-18,288-299,302-307
3gr8 A:5-12,13-18,288-299,302-307
2yfj G:163-169,170-176,190-200,337-346
2yfj K:163-169,170-176,190-200,337-346
2yfj I:163-169,170-176,190-200,337-346
2yfj E:163-169,170-176,190-202,337-346
2yr5 A:375-381,386-394,411-423,428-433
3p1y C:156-161,188-192,192-203,241-247
3p1y D:156-161,188-192,192-203,241-247
3p1y A:156-161,188-192,192-203,241-247
3p1y B:6-11,26-31,31-42,80-84
3p1y B:156-161,188-192,192-203,241-247
3pft B:22-30,70-76,80-89,106-111
3pft A:22-30,70-76,77-89,106-111
3gx9 A:11-18,19-24,309-320,323-328
3giy A:62-67,68-73,289-300,302-307
2ze4 A:81-89,170-175,208-231,465-474
2ze4 A:177-183,198-207,208-231,465-474
2bwg B:33-40,41-46,197-213,214-220
2bwg A:33-40,41-46,197-213,214-220
2bwg D:33-40,41-46,197-213,214-220
1zm8 A:120-125,146-151,151-173,175-186
1zm8 A:120-125,146-151,151-173,222-230
3lx2 C:154-161,194-201,201-213,237-246
2h90 A:4-11,12-17,306-317,320-324
3p8i A:5-12,13-18,304-315,318-323
3tw6 B:161-168,175-181,184-201,1119-1126
3nkp A:671-676,696-701,701-715,783-793
3qnr C:89-93,94-98,267-281,293-306
3qnr A:88-93,94-99,267-281,293-306
3qnr B:89-93,94-98,267-281,293-306
3nem A:33-42,43-52,56-67,69-77
2xp1 A:823-832,834-845,857-879,923-932
3nqy B:235-240,258-263,276-297,304-310
2y8w A:-2-9,76-88,184-195,206-211
3g3c A:188-192,221-228,228-235,249-256
3nkm A:671-676,696-701,701-715,783-793
3i2m X:190-198,241-248,248-261,290-299
3n16 A:4-11,12-17,306-317,320-324
2a1y A:27-32,33-38,212-223,225-229
3l5l A:4-11,12-17,306-317,320-324
2xh3 A:118-122,136-140,159-175,177-187
2xh3 B:118-122,136-140,159-175,177-187
2zru C:49-54,55-60,278-289,291-296
2zru A:49-54,55-60,278-289,291-296
2zru D:49-54,55-60,278-289,291-296
2xr8 M:163-169,170-176,190-200,337-346
2xr8 E:163-169,170-176,190-200,337-346
2xr8 W:163-169,170-176,190-202,337-346
2xr8 I:163-169,170-176,190-200,337-345
2xr8 S:163-169,170-176,187-202,337-346
2xr8 O:163-169,170-176,190-200,337-346
2xr8 G:163-169,170-176,190-200,337-346
2xr8 U:163-169,170-176,190-202,337-346
2xr8 C:163-169,170-176,190-200,337-346
2xr8 Q:163-169,170-176,187-202,337-346
3hgs A:12-19,20-25,323-334,337-341
3hgs B:12-19,20-25,323-334,337-342
3lnm C:38-42,47-51,228-237,238-243
3lz5 A:2-7,9-14,192-203,204-209
2d38 A:16-24,63-70,72-82,99-104
3kg9 A:995-999,1000-1004,1112-1124,1188-1196
2pdx A:2-7,9-14,192-203,204-209
2yr4 B:375-381,386-394,411-423,428-433
2hs6 B:12-19,20-25,323-334,337-341
2hs6 A:12-19,20-25,323-334,337-342
3h7r A:6-11,13-18,185-196,197-202
3bcr A:89-93,128-132,133-151,153-160
3rpg C:61-66,67-72,72-83,85-89
3rpg B:28-33,34-39,39-51,51-55
3cf3 C:55-62,64-74,85-93,149-156
3lql A:3-8,10-15,193-204,205-210
3it9 B:258-264,292-298,297-304,321-333
3hu1 D:53-62,64-74,85-93,149-157
3hu1 E:53-62,64-74,85-93,149-157
3hu1 F:53-62,64-74,85-93,149-157
3hu1 B:53-62,64-74,85-93,149-157
3hu1 C:53-62,64-74,85-93,149-157
3hu1 A:53-62,64-74,85-93,149-157
1yqt A:278-287,289-298,298-309,309-313
3p8j A:5-12,13-18,304-315,318-323
3mfd B:228-238,239-248,251-267,296-301
3o8a A:208-213,214-219,510-521,523-527
3u2c A:2-7,9-14,192-203,204-209
3tsb B:32-36,40-44,346-357,359-363
3tsb A:32-36,40-44,346-357,359-363
3p82 A:5-12,13-18,304-315,318-323
2xrx S:163-169,170-176,187-202,337-346
2xrx E:163-169,170-176,190-200,337-346
2xrx M:163-169,170-176,190-200,337-346
2xrx I:163-169,170-176,187-202,337-346
2xrx Q:163-169,170-176,187-202,337-346
2xrx K:163-169,170-176,187-202,337-346
2xrx O:163-169,170-176,190-200,337-346
2xrx C:163-169,170-176,190-200,337-346
2xrx U:163-169,170-176,190-200,337-346
2xrx A:163-169,170-176,187-202,337-346
2xrx W:163-169,170-176,187-202,337-346
2cu0 B:36-41,43-48,339-350,352-356
1vrd B:26-31,33-38,339-350,352-356
2oz0 B:179-184,185-190,414-425,427-432
2ghp G:66-75,79-88,129-141,143-149
2ghp E:66-75,79-88,129-141,143-149
2ghp D:66-75,79-88,129-141,143-149
2ghp H:66-75,79-88,129-141,143-149
2ghp C:66-75,79-88,129-141,143-149