1. e.29.1 beta and beta-prime subunits of DNA dependent RNA-polymerase The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit !
beta and beta-prime subunits of DNA dependent RNA-polymerase Multidomain subunits of complex domain organization
1i6v d1i6vc_ C:672-677,858-862,868-872,988-992
2gho d2ghoc1 C:672-677,858-862,868-872,988-992
2nvz d2nvzb1 B:820-828,998-1003,1009-1013,1084-1096
2. i.8.1 RNA polymerase
RNA polymerase
1hqm d1hqmc_ C:672-677,858-862,868-872,988-992
3. e.1.1 Serpins
Serpins contains a cluster of helices and a beta-sandwich
1dzg d1dzgi_ I:138-150,151-155,168-174,212-224
1atu d1atua_ A:112-122,125-129,141-146,182-192
1ath d1atha_ A:138-149,151-155,169-174,212-224
4. d.265.1 Pseudouridine synthase the active site is the most conserved structural region of the superfamily and is located between the subdomains !
Pseudouridine synthase consists of two alpha+beta subdomains with some similarity to the ferredoxin-like fold
1szw d1szwb_ B:28-33,80-84,84-93,126-140
5. b.2.3 Bacterial adhesins
Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
1ut1 d1ut1f_ F:7-17,19-24,28-32,125-138
1ut1 d1ut1b_ B:7-17,19-24,28-32,125-138
1ut1 d1ut1d_ D:7-17,19-24,28-32,125-138
1ut1 d1ut1c_ C:7-17,19-24,28-32,125-138
6. i.6.1 Viruses and virus-receptor complexes
Viruses and virus-receptor complexes
1m0f d1m0fg_ G:31-36,44-55,60-70,110-114
7. b.121.5 ssDNA viruses
Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
1m06 d1m06g_ G:31-36,44-55,60-70,110-114
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 40 (enumeration index: query184) of S4
2y0s R:722-730,899-904,910-914,985-996
2y0s B:722-730,899-904,910-914,985-996
3hkz B:719-727,896-901,907-911,982-993
3hkz J:719-727,896-901,907-911,982-993
2pee B:136-149,151-155,168-174,207-220
2pee A:136-149,151-155,168-174,207-220
3c1y A:36-44,52-56,76-82,120-128
3c1y B:35-44,52-56,76-82,120-129
3n91 A:40-49,62-72,187-198,335-339
3c1z A:36-44,52-56,76-82,120-128
3fv3 D:37-43,92-96,101-112,116-121
3k0w A:134-139,140-151,196-209,240-254
2waq B:722-730,899-904,910-914,985-996
2w5p B:7-17,19-24,28-32,125-139
2j6r B:5-18,24-30,33-40,248-262
2j6r A:5-18,24-30,33-39,247-262
3abi B:135-149,172-178,218-227,263-276
3abi A:135-149,172-178,218-227,263-276
3lb9 A:2-12,18-25,140-152,167-179
2wb1 B:722-730,899-904,910-914,985-996
2wb1 R:722-730,899-904,910-914,985-996
2pmz B:719-727,896-901,907-911,982-993
2pmz R:719-727,896-901,907-911,982-993
2zwn C:35-41,42-53,118-126,305-309
2zwn A:35-41,42-53,118-126,305-309
3c23 B:36-44,52-56,76-82,120-128
3c23 A:36-44,52-56,76-82,120-128