List of the counted superfamily hits for pattern ID: 43 (enumeration index: query189) of S4

List of the counted superfamily hits for pattern ID: 43 (enumeration index: query189) of S4

SCOP superfamily ID superfamiily description corresponding fold description
a.104.1Cytochrome P450 Cytochrome P450 multihelical
d.218.1Nucleotidyltransferase Nucleotidyltransferase core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123
f.47.1VP4 membrane interaction domain VP4 membrane interaction domain 2 domains; d1: complexed all-beta fold; d2: coiled-coil (trimeric) helical region
b.64.1Mannose 6-phosphate receptor domain Mannose 6-phosphate receptor domain barrel, partly open; n*=8, S*=10; one psi loop
b.40.4Nucleic acid-binding proteins OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
e.69.1Poly(A) polymerase catalytic subunit-like Central domain d2 is distantly related to the nucleotidyltransferase superfamily (scop_sf 81301)Poly(A) polymerase catalytic subunit-like 3 domains; d1: all-alpha, contains HhH motif; d2: alpha+beta of nucleotidyltransferase fold (scop_cf 81302); d3: [alpha+beta; beta(3)-alpha-beta(3)-alpha(2); 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 123654, strands 2 and 5 are antiparallel to the rest
d.32.1Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase beta-alpha-beta(3); 2 layers: alpha/beta
b.40.16HIN-2000 domain-like duplication: tandem repeat of two OB-fold domainsOB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
b.40.7CheW-like OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
d.307.1Nqo5-like Nqo5-like core: alpha-beta(2)-alpha-beta(3); 2 layers, a/b; mixed beta-sheet, order 12534, strands 2 and 5 are parallel
b.40.2Bacterial enterotoxins OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
b.116.1Viral chemokine binding protein m3 Viral chemokine binding protein m3 consists of two different beta-sandwich domains of partial topological similarity to immunoglobulin-like folds
d.328.1CorA soluble domain-like CorA soluble domain-like beta(2)-alpha-beta-alpha(2)-beta(4)-alpha(3); 3 layers: a/b/a; mixed beta-sheet, order 2137654; strands 3 and 7 are parallel
b.40.5Inorganic pyrophosphatase OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
b.50.1Acid proteases Acid proteases barrel, closed; n=6, S=10, complex topology
b.40.11TM0957-like extra N-terminal region and large insertion after strand 3 together form an alpha-helical subdomain ! OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
b.133.1Dextranase, N-terminal domain Dextranase, N-terminal domain sandwich; 9 strands in 2 sheets; greek-key
b.40.9Heme chaperone CcmE OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
b.40.3TIMP-like OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
b.74.1Carbonic anhydrase Carbonic anhydrase single sheet; 10 strands
e.1.1Serpins Serpins contains a cluster of helices and a beta-sandwich
g.29.1Type X cellulose binding domain, CBDX Type X cellulose binding domain, CBDX disulfide-rich, alpha+beta
b.40.10Hypothetical protein YgiW OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
d.265.1Pseudouridine synthase the active site is the most conserved structural region of the superfamily and is located between the subdomains ! Pseudouridine synthase consists of two alpha+beta subdomains with some similarity to the ferredoxin-like fold
d.260.1Suppressor of Fused, N-terminal domain Suppressor of Fused, N-terminal domain unusual fold; bifurcated beta-sheet; left-handed beta-alpha-beta unit
b.40.15EutN/CcmL-like homohexameric unitOB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
b.40.12NfeD domain-like close structural similarity to some members of the Nucleic acid-binding OB-fold proteins, possibly related to this superfamily ! OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
d.238.1Hypothetical protein TM0875 Hypothetical protein TM0875 unusual fold; core: beta(2)-loop-beta(2)-alpha-beta; mixed beta-sheet: order 51243; parallel strands 2 and 4
d.303.1BB1717-like BB1717-like complex fold with a bifurcated beta-sheet structure surrounded by helices; contains beta-sheet barrel, closed (n=5, S=8)
e.58.1Viral ssDNA binding protein Viral ssDNA binding protein 2 domains; d1: [large alpha+beta domain subdivided into the 'head', 'neck' and 'shoulders' regions; in the 'neck', there is an OB-fold interrupted by large insertions]; d2: [all-alpha, 6 helices; orthogonal array]
d.213.1VSV matrix protein VSV matrix protein beta-alpha(2)-beta(4)-alpha-beta(2); two layers: alpha/beta; bifurcated coiled beta-sheet: order of the first 5 strands: 23154
b.69.103-carboxy-cis,cis-mucoante lactonizing enzyme 7-bladed beta-propeller consists of seven 4-stranded beta-sheet motifs; meander