1. c.77.1 Isocitrate/Isopropylmalate dehydrogenase-like the constituent families form similar dimers ! Isocitrate/Isopropylmalate dehydrogenase-like consists of two intertwined (sub)domains related by pseudo dyad; duplication ! 3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest 1itw d1itwc_ C:64-76,75-84,565-572,573-581 1itw d1itwa_ A:64-76,75-84,565-572,573-581 1itw d1itwd_ D:64-76,75-84,565-572,573-581 1itw d1itwb_ B:64-76,75-84,565-572,573-581 1j1w d1j1wd_ D:64-76,76-83,565-572,574-580 1j1w d1j1wa_ A:64-76,76-83,565-572,574-580 1t09 d1t09b_ B:54-68,68-74,290-297,302-308 1t09 d1t09a_ A:54-68,68-74,290-297,302-308 1lwd d1lwdb_ B:55-69,69-75,290-297,302-307 1lwd d1lwda_ A:55-69,69-75,290-297,302-307 1t0l d1t0lb_ B:54-68,68-74,290-297,302-307 1t0l d1t0la_ A:54-68,68-74,290-297,302-307 1t0l d1t0ld_ D:54-68,68-74,290-297,302-307 1hqs d1hqsb_ B:76-87,87-94,328-335,336-343 1t0l d1t0lc_ C:54-68,68-74,290-297,302-306 1hj6 d1hj6a_ A:85-96,96-103,323-330,331-338 1vi1 d1vi1a_ A:78-90,93-98,281-286,289-294 1hqs d1hqsa_ A:76-87,87-94,327-335,336-344 1bl5 d1bl5a_ A:202-221,223-229,263-268,273-281 1j1w d1j1wc_ C:64-76,76-83,565-571,574-580 1j1w d1j1wb_ B:64-76,76-83,565-571,574-580 1qzt d1qztb_ B:103-115,118-123,291-300,304-308 1ai2 d1ai2a_ A:85-96,96-103,324-330,331-337 1ai3 d1ai3a_ A:85-96,96-103,324-330,331-337 1iso d1isoa_ A:85-96,96-103,324-330,331-337 1xad d1xada_ A:54-64,65-72,257-264,266-272 1xac d1xaca_ A:54-64,65-72,257-264,266-272 1u7n d1u7nb_ B:77-89,92-97,283-288,292-296 1u7n d1u7na_ A:77-89,92-97,283-288,292-296 1vi1 d1vi1b_ B:78-90,93-98,281-286,290-294 3icd d3icda_ A:85-96,96-103,324-330,331-337 4icd d4icda_ A:85-96,96-103,324-330,331-337 7icd d7icda_ A:85-96,96-103,324-330,331-337 1bl5 d1bl5a_ A:85-96,96-103,324-330,331-337 5icd d5icda_ A:85-96,96-103,324-330,331-337 5icd d5icda_ A:202-221,223-229,263-269,272-281 1dpz d1dpzb_ B:54-64,65-72,257-264,266-272 9icd d9icda_ A:85-96,96-103,324-330,331-337 1ide d1idea_ A:202-221,223-229,263-269,272-281 1idd d1idda_ A:85-96,96-102,324-330,331-337 1dr8 d1dr8a_ A:54-64,65-72,257-264,266-272 1dr8 d1dr8b_ B:54-64,65-72,257-264,266-272 1dpz d1dpza_ A:54-64,65-72,257-264,266-272 1cnz d1cnzb_ B:58-68,69-76,267-274,276-283 6icd d6icda_ A:85-96,96-103,324-330,331-337 1cnz d1cnza_ A:58-68,69-76,267-274,276-283 1dr0 d1dr0a_ A:54-64,65-72,257-264,266-272 1gc9 d1gc9a_ A:54-64,65-72,257-264,266-272 1gc8 d1gc8b_ B:54-64,65-72,257-264,266-272 1a05 d1a05b_ B:55-65,66-73,262-269,270-277 1cw4 d1cw4a_ A:85-96,96-103,324-330,331-337 1wal d1wala_ A:54-64,65-72,257-264,266-272 1grp d1grpa_ A:85-96,96-103,324-330,331-337 1ps7 d1ps7a_ A:90-111,114-121,281-287,291-296 8icd d8icda_ A:85-96,96-103,324-330,331-337 1ipd d1ipda_ A:54-64,65-72,257-264,266-272 1idf d1idfa_ A:85-96,96-102,324-330,331-337 1dr0 d1dr0b_ B:54-64,65-72,257-264,266-272 1osj d1osja_ A:54-64,65-72,257-264,266-272 1gro d1groa_ A:85-96,96-103,324-330,331-337 1ide d1idea_ A:85-96,96-103,324-330,331-337 1pb1 d1pb1a_ A:85-96,96-103,324-330,331-337 1cw1 d1cw1a_ A:85-96,96-103,324-330,331-337 1pb3 d1pb3a_ A:85-96,96-103,324-330,331-337 1sjs d1sjsa_ A:85-96,96-103,324-330,331-337 1idm d1idma_ A:54-64,65-72,255-262,264-270 1idc d1idca_ A:85-96,96-103,324-330,331-337 1g2u d1g2ua_ A:54-64,65-72,257-264,266-272 1xaa d1xaaa_ A:54-64,65-72,257-264,266-272 1p8f d1p8fa_ A:85-96,96-103,324-330,331-337 1a05 d1a05a_ A:55-65,66-73,262-269,270-277 1gc8 d1gc8a_ A:1054-1064,1065-1072,1257-1264,1266-1272 1osi d1osia_ A:54-64,65-72,257-264,266-272 1xab d1xaba_ A:54-64,65-72,257-264,266-272 1osj d1osjb_ B:54-64,65-72,257-264,266-272 1osi d1osic_ C:54-64,65-72,257-264,266-272 1ps7 d1ps7c_ C:90-111,113-121,281-287,291-296 1ptm d1ptma_ A:90-111,113-121,281-287,291-296 1idd d1idda_ A:202-221,223-229,263-269,272-281 1v53 d1v53b1 B:56-66,67-74,262-268,272-278 1idc d1idca_ A:202-221,223-229,263-270,271-281 1ps6 d1ps6a_ A:90-111,113-121,281-287,291-296 1grp d1grpa_ A:202-221,223-229,263-270,271-281 1cw7 d1cw7a_ A:85-96,96-102,324-330,331-337 1ika d1ikaa_ A:85-96,96-102,324-330,331-337 1osi d1osid_ D:54-65,65-72,257-264,267-272 6icd d6icda_ A:202-221,223-229,263-270,271-281 1vlc d1vlca_ A:54-65,65-72,259-266,267-273 1p8f d1p8fa_ A:202-221,223-229,263-270,271-281 1cm7 d1cm7b_ B:58-68,69-76,267-274,276-283 1cw7 d1cw7a_ A:202-221,223-229,263-270,271-281 1r8k d1r8ka_ A:90-111,113-121,281-287,291-296 1ps7 d1ps7b_ B:90-111,114-121,281-287,291-296 2ayq d2ayqa_ A:56-66,67-74,262-268,272-278 1pb1 d1pb1a_ A:202-221,223-229,263-270,271-281 1ps7 d1ps7d_ D:90-111,113-121,281-287,291-296 1pb3 d1pb3a_ A:202-221,223-229,263-270,271-281 2ayq d2ayqb_ B:56-67,67-74,262-268,272-278 1hj6 d1hj6a_ A:202-221,223-229,263-270,271-281 7icd d7icda_ A:202-221,223-229,263-270,271-281 1iso d1isoa_ A:202-221,223-229,263-270,271-281 1gro d1groa_ A:202-221,223-229,263-270,271-281 1cw4 d1cw4a_ A:202-221,223-229,263-270,271-281 1cw1 d1cw1a_ A:202-221,223-229,263-270,271-281 1ai2 d1ai2a_ A:202-221,223-229,263-270,271-281 1ai3 d1ai3a_ A:202-221,223-229,263-270,271-281 1v53 d1v53a1 A:56-66,67-74,262-268,272-278 1cm7 d1cm7a_ A:58-68,69-78,267-274,276-283 3icd d3icda_ A:202-221,223-229,263-270,271-281 8icd d8icda_ A:202-221,223-229,263-270,271-281 9icd d9icda_ A:202-221,223-229,263-270,271-281 1sjs d1sjsa_ A:202-221,223-229,263-270,271-281 4icd d4icda_ A:202-221,223-229,263-270,271-281 1idf d1idfa_ A:202-221,223-229,263-270,271-281 1r8k d1r8kb_ B:90-111,113-121,281-287,291-295 1ptm d1ptmb_ B:90-111,113-121,281-287,291-295 1ps6 d1ps6b_ B:90-111,114-121,281-287,291-295 1hex d1hexa_ A:54-64,65-72,257-264,267-272 1osi d1osib_ B:54-64,65-72,257-264,267-272 1wpw d1wpwb_ B:55-65,66-74,240-247,248-255 1wpw d1wpwa_ A:55-65,66-74,240-247,248-255 1w0d d1w0dc_ C:50-60,61-68,251-257,263-269 1w0d d1w0dd_ D:50-60,61-68,251-257,263-269 1w0d d1w0db_ B:50-60,61-68,251-257,263-269 1w0d d1w0da_ A:50-60,61-68,251-257,263-269 1ika d1ikaa_ A:202-221,223-229,263-267,275-281 2g4o d2g4oc1 C:50-60,61-68,251-257,263-269 2g4o d2g4oa1 A:50-60,61-68,251-257,263-269 2g4o d2g4od1 D:50-60,61-68,251-257,263-269 2. d.159.1 Metallo-dependent phosphatases different families of this superfamily are groupped in a single Pfam family, Metallo-dependent phosphatases 4 layers: alpha/beta/beta/alpha; mixed beta sheets; contains duplication 1s3m d1s3mb_ B:300-311,314-320,322-330,331-339 1s3m d1s3ma_ A:100-111,114-120,122-130,131-139 2ahd d2ahdc1 C:100-111,114-120,122-130,131-139 2ahd d2ahdb1 B:300-311,314-320,322-330,331-339 2ahd d2ahda1 A:100-111,114-120,122-130,131-139 2ahd d2ahdd1 D:300-311,314-320,322-330,331-339 1s3n d1s3nb_ B:300-311,314-320,322-330,331-339 1s3n d1s3na_ A:100-111,114-120,122-130,131-139 2z06 d2z06c1 C:148-160,164-170,178-182,184-193 2z06 d2z06b1 B:148-160,164-170,178-182,184-193 2cv9 d2cv9c1 C:148-160,164-170,178-182,184-193 2z06 d2z06d1 D:148-160,164-170,178-182,184-193 1s3l d1s3la_ A:100-111,114-120,124-130,131-137 1s3l d1s3lb_ B:300-311,314-320,324-330,331-337 1t70 d1t70c_ C:751-763,767-773,781-785,787-796 1t70 d1t70a_ A:151-163,167-173,181-185,187-196 2z06 d2z06a1 A:148-160,164-170,178-182,184-192 1t70 d1t70b_ B:451-463,467-473,481-485,487-496 2cv9 d2cv9b1 B:148-160,164-170,178-182,184-192 2cv9 d2cv9a1 A:148-160,164-170,178-182,184-192 2cv9 d2cv9d1 D:148-160,164-170,177-182,184-190 2z1a d2z1aa2 A:217-228,232-237,258-264,266-273 1t70 d1t70h_ H:2251-2263,2267-2273,2281-2285,2287-2295 2r17 d2r17b1 B:95-107,109-115,117-125,126-134 1w24 d1w24a1 A:95-107,109-115,117-125,126-134 2a22 d2a22b1 B:110-122,124-130,132-140,141-149 2a22 d2a22a1 A:110-122,124-130,132-140,141-149 2r17 d2r17a1 A:95-107,109-115,117-125,126-134 1t70 d1t70f_ F:1651-1663,1667-1673,1681-1685,1687-1695 1nnw d1nnwa_ A:154-166,169-175,177-185,186-194 1nnw d1nnwb_ B:154-166,169-175,177-185,186-194 3ck2 d3ck2a1 A:90-102,104-110,112-120,121-129 1uf3 d1uf3e_ E:169-180,182-187,189-197,198-206 2yvt d2yvta1 A:201-212,214-220,222-229,230-237 1uf3 d1uf3a_ A:169-180,182-187,189-197,198-206 1t70 d1t70d_ D:1051-1063,1067-1073,1081-1085,1087-1095 1uf3 d1uf3d_ D:169-180,182-187,189-197,198-206 1uf3 d1uf3b_ B:169-180,182-187,189-197,198-206 1uf3 d1uf3c_ C:169-180,182-187,189-197,198-206 1uf3 d1uf3f_ F:169-180,182-187,189-197,198-206 1t70 d1t70g_ G:1951-1963,1967-1973,1981-1985,1987-1993 1t70 d1t70e_ E:1351-1363,1367-1373,1381-1385,1387-1393 1oi8 d1oi8a2 A:232-241,245-251,277-281,282-287 1t71 d1t71a_ A:161-173,177-183,190-195,197-203 1ho5 d1ho5b2 B:232-241,245-251,277-281,282-287 1g5b d1g5bc_ C:161-171,180-186,192-196,197-201 2ush d2usha2 A:232-241,245-251,277-281,282-287 2ush d2ushb2 B:232-241,245-251,277-281,282-287 1hpu d1hpua2 A:232-241,245-251,277-281,282-287 1hpu d1hpub2 B:232-241,245-251,277-281,282-287 1g5b d1g5bb_ B:161-171,180-186,192-196,197-202 1oid d1oidb2 B:232-241,245-251,277-281,282-287 1oie d1oiea2 A:232-241,245-251,277-281,282-287 1g5b d1g5ba_ A:161-171,180-186,192-196,197-201 1ho5 d1ho5a2 A:232-241,245-251,277-281,282-287 1oid d1oida2 A:232-241,245-251,277-281,282-287 1hpu d1hpud2 D:232-241,245-251,277-281,282-287 1hp1 d1hp1a2 A:232-241,245-251,277-281,282-287 1oi8 d1oi8b2 B:232-241,245-251,277-281,282-287 1hpu d1hpuc2 C:232-241,245-251,277-281,282-287 1qfc d1qfca_ A:198-213,214-221,223-231,233-241 1ush d1usha2 A:232-241,245-251,277-281,282-287 2p6b d2p6bc1 C:262-273,275-281,287-296,297-302 1m63 d1m63e_ E:262-273,275-281,287-296,297-302 2p6b d2p6ba1 A:262-273,275-281,287-295,298-302 2zo9 d2zo9c1 C:174-186,187-195,197-205,206-213 1mf8 d1mf8a_ A:262-273,275-281,287-295,298-302 2dxn d2dxnb1 B:174-186,187-195,197-205,206-213 2dxl d2dxlb1 B:174-186,187-195,197-205,206-213 3d03 d3d03e1 E:174-186,189-195,197-205,206-213 3d03 d3d03b1 B:174-186,189-195,198-205,206-213 2dxn d2dxna1 A:174-186,187-195,197-205,206-213 3d03 d3d03d1 D:174-186,189-195,197-205,206-213 2dxl d2dxla1 A:174-186,187-195,197-205,206-213 3d03 d3d03a1 A:174-186,189-195,197-205,206-214 2zoa d2zoab1 B:174-186,187-195,197-205,206-214 2zo9 d2zo9b1 B:174-186,189-195,197-205,206-214 2zoa d2zoaa1 A:174-186,187-195,197-205,206-214 3d03 d3d03f1 F:174-186,189-195,197-205,206-214 1ute d1utea_ A:204-213,215-221,223-231,233-241 3d03 d3d03c1 C:174-186,189-195,197-205,206-214 1qhw d1qhwa_ A:226-234,236-242,244-252,254-262 2nxf d2nxfa1 A:244-256,259-265,267-275,277-285 2zo9 d2zo9c1 C:164-171,187-195,197-205,206-213 2dxl d2dxlb1 B:164-171,187-195,197-205,206-213 3c9f d3c9fb2 B:224-239,242-248,251-258,261-269 2zo9 d2zo9b1 B:164-171,189-195,197-205,206-214 3c9f d3c9fa2 A:224-239,242-248,251-258,261-269 3. c.57.1 Molybdenum cofactor biosynthesis proteins Molybdenum cofactor biosynthesis proteins 3 layers: a/b/a; mixed beta-sheet of 5 strands; order: 21354, strand 5 is antiparallel to the rest; permutation of the Phosphorylase/hydrolase-like fold 1o8o d1o8oa_ A:55-71,73-79,124-130,131-138 1y5e d1y5eb1 B:56-71,74-80,127-133,134-141 1o8n d1o8na_ A:55-71,73-79,124-130,131-138 1y5e d1y5ea1 A:56-71,74-80,127-133,134-141 1y5e d1y5ec1 C:56-71,74-80,127-133,134-141 1mkz d1mkza_ A:53-67,71-77,123-129,130-137 1mkz d1mkzb_ B:53-67,71-77,123-129,130-137 1o8q d1o8qa_ A:55-71,73-79,125-130,131-138 1o8q d1o8qb_ B:55-71,73-79,125-130,131-138 1o8q d1o8qh_ H:55-71,73-79,125-130,131-138 1o8q d1o8qe_ E:55-71,73-79,125-130,131-138 1o8q d1o8qf_ F:55-71,73-79,125-130,131-138 1o8q d1o8qc_ C:55-71,73-79,125-130,131-138 1o8q d1o8qg_ G:55-71,73-79,125-130,131-138 1o8q d1o8qd_ D:55-71,73-79,125-130,131-138 1eav d1eave_ E:55-71,73-79,125-130,131-138 1r2k d1r2kb_ B:52-66,70-76,122-128,129-136 1eav d1eavb_ B:55-71,73-79,125-130,131-138 1o8o d1o8oc_ C:55-71,73-79,125-130,131-138 1eav d1eava_ A:55-71,73-79,125-130,131-138 1o8o d1o8ob_ B:55-71,73-79,125-130,131-138 1o8n d1o8nb_ B:55-71,73-79,125-130,131-138 1eav d1eavg_ G:55-71,73-79,125-130,131-138 1r2k d1r2ka_ A:52-66,70-76,122-128,129-136 1eav d1eavc_ C:55-71,73-79,125-130,131-138 1uux d1uuxa_ A:55-71,73-79,125-130,131-138 1eav d1eavf_ F:55-71,73-79,125-130,131-138 1uuy d1uuya_ A:55-71,73-79,125-130,131-138 1eav d1eavh_ H:55-71,73-79,125-130,131-138 1eav d1eavd_ D:55-71,73-79,125-130,131-138 1o8n d1o8nc_ C:55-71,73-79,125-130,131-138 1wu2 d1wu2a3 A:236-251,251-257,285-291,292-297 2f7w d2f7wb1 B:50-66,68-74,120-125,126-133 1jlj d1jljb_ B:62-78,80-86,132-137,138-145 2f7y d2f7yc1 C:50-66,68-74,120-125,126-133 1jlj d1jlja_ A:62-78,80-86,132-137,138-145 1jlj d1jljc_ C:62-78,80-86,132-137,138-145 2f7w d2f7wc1 C:50-66,68-74,120-125,126-133 1di6 d1di6a_ A:50-66,68-74,120-125,126-133 1di7 d1di7a_ A:50-66,68-74,120-125,126-133 2f7y d2f7ya1 A:50-66,68-74,120-125,126-134 2f7y d2f7yb1 B:50-66,68-74,120-125,126-134 1ihc d1ihca_ A:62-78,80-86,132-137,138-145 1wu2 d1wu2b3 B:236-252,252-258,285-291,292-297 2f7w d2f7wa1 A:50-66,68-74,120-125,126-134 1uz5 d1uz5a3 A:232-247,248-255,285-293,294-302 1xi8 d1xi8a3 A:236-251,252-258,285-291,292-297 2g2c d2g2ca1 A:51-66,68-74,120-125,130-137 1xi8 d1xi8b3 B:236-251,252-258,285-291,292-297 1g8l d1g8la3 A:229-244,245-252,282-290,291-298 2nro d2nroa3 A:229-244,245-252,282-290,291-298 2nqm d2nqma3 A:229-244,245-252,282-290,291-298 1g8l d1g8lb3 B:229-244,245-252,282-290,291-298 2nqq d2nqqc3 C:229-244,245-252,282-290,291-298 2nrp d2nrpa3 A:229-244,245-252,282-290,291-298 2nqm d2nqmb3 B:229-244,245-252,282-290,291-298 2nqq d2nqqa3 A:229-244,245-252,282-290,291-298 2nqv d2nqvb3 B:229-244,245-252,282-290,291-298 2nqs d2nqsb3 B:229-244,245-252,282-290,291-298 2nqn d2nqna3 A:229-244,245-252,282-290,291-298 1g8r d1g8rb3 B:229-244,245-252,282-290,291-298 2nqn d2nqnb3 B:229-244,245-252,282-290,291-298 1g8r d1g8ra3 A:229-244,245-252,282-290,291-298 2nro d2nrob3 B:229-244,245-252,282-290,291-298 2nqu d2nqub3 B:229-244,245-252,282-290,291-298 2nrs d2nrsa3 A:229-244,245-252,282-290,291-298 2nrs d2nrsb3 B:229-244,245-252,282-290,291-298 2nqk d2nqka3 A:229-244,245-252,282-290,291-298 2nqr d2nqrb3 B:229-244,245-252,282-290,291-298 2nqr d2nqra3 A:229-244,245-252,282-290,291-298 2nqq d2nqqb3 B:229-244,245-252,282-290,291-298 2nqs d2nqsa3 A:229-244,245-252,282-290,291-297 2nqv d2nqva3 A:229-244,245-252,282-290,291-298 2nrp d2nrpb3 B:229-244,245-252,282-290,291-298 2nqq d2nqqd3 D:229-244,245-252,282-290,291-298 2nqk d2nqkb3 B:229-244,245-252,282-290,291-298 2nqu d2nqua3 A:229-244,245-252,282-290,291-298 1fc5 d1fc5b3 B:229-244,245-252,282-290,291-298 1t3e d1t3ea3 A:550-565,566-572,605-615,616-625 1fc5 d1fc5a3 A:229-244,245-252,282-290,291-298 1t3e d1t3eb3 B:550-565,566-572,605-615,616-625 2fu3 d2fu3b3 B:550-565,566-572,604-615,616-625 2fu3 d2fu3a3 A:550-565,566-572,605-615,616-625 2fts d2ftsa3 A:550-565,566-573,605-615,616-626 4. c.132.1 Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, N-terminal domain 3 layers: a/b/a; mixed beta-sheet of 6 strands; order: 213546, strand 5 is antiparallel to the rest; topological similarity to the MogA-like family fold 2cbx d2cbxb2 B:51-67,69-76,86-93,116-122 2v7x d2v7xb2 B:51-67,69-76,85-93,116-123 2c5h d2c5hc2 C:51-67,69-76,85-93,116-123 2c5h d2c5ha2 A:51-62,69-76,85-93,116-123 2c5h d2c5hb2 B:51-62,69-76,85-93,116-123 2c4t d2c4ta2 A:51-62,69-76,86-93,116-122 2v7x d2v7xa2 A:51-62,69-76,85-93,116-123 2cbx d2cbxc2 C:51-62,69-76,86-93,116-122 2cbx d2cbxa2 A:51-62,69-76,86-93,116-122 2v7x d2v7xc2 C:51-62,69-76,85-93,116-123 2v7t d2v7tc2 C:51-62,69-76,86-93,116-122 2v7u d2v7ub2 B:51-62,69-76,86-93,116-122 2v7u d2v7uc2 C:51-62,69-76,86-93,116-122 2v7t d2v7ta2 A:51-62,69-76,86-93,116-122 2c2w d2c2wa2 A:51-62,69-76,86-93,116-122 2v7t d2v7tb2 B:51-62,69-76,86-93,116-122 2v7u d2v7ua2 A:51-62,69-76,86-93,116-122 2c4t d2c4tb2 B:51-62,69-76,86-93,116-122 2c5b d2c5ba2 A:51-62,69-76,85-93,116-123 1rqr d1rqra2 A:51-62,69-76,86-93,116-122 2c4t d2c4tc2 C:51-62,69-76,85-93,116-122 2c4u d2c4ub2 B:51-62,69-76,85-93,116-123 2cc2 d2cc2b2 B:51-62,69-76,86-93,116-122 2c4u d2c4ue2 E:51-62,69-76,85-93,116-123 2c4u d2c4uc2 C:51-62,69-76,85-93,116-123 2v7v d2v7va2 A:51-62,69-76,86-93,116-122 2v7w d2v7wa2 A:51-62,69-76,86-93,116-122 2v7v d2v7vb2 B:51-62,69-76,86-93,116-122 1rqp d1rqpc2 C:51-62,69-76,86-93,116-122 2v7w d2v7wb2 B:51-62,69-76,86-93,116-122 1rqp d1rqpa2 A:51-62,69-76,86-93,116-122 2c2w d2c2wc2 C:51-62,69-76,86-93,116-122 2c2w d2c2wb2 B:51-62,69-76,86-93,116-122 1rqr d1rqrc2 C:51-62,69-76,86-93,116-122 2cc2 d2cc2a2 A:51-62,69-76,86-93,116-122 2v7v d2v7vc2 C:51-62,69-76,86-93,116-122 2v7w d2v7wc2 C:51-62,69-76,86-93,116-122 2c4u d2c4ua2 A:51-62,69-76,85-93,116-123 1rqp d1rqpb2 B:51-62,69-76,86-93,116-122 1rqr d1rqrb2 B:51-62,69-76,86-93,116-122 2c5b d2c5bc2 C:51-62,69-76,85-93,116-122 2cc2 d2cc2c2 C:51-62,69-76,86-93,116-122 2c5b d2c5bb2 B:51-62,69-76,85-93,116-123 2c4u d2c4uf2 F:51-62,69-76,85-93,116-123 2c4u d2c4ud2 D:51-62,69-76,85-93,116-123 5. c.23.16 Class I glutamine amidotransferase-like conserved positions of the oxyanion hole and catalytic nucleophile; different constituent families contain different additional structures ! Flavodoxin-like 3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345 2gk3 d2gk3b1 B:103-115,115-122,206-213,214-221 2gk3 d2gk3d1 D:103-115,115-122,206-213,214-221 2gk3 d2gk3c1 C:103-115,115-123,206-213,214-223 2gk3 d2gk3e1 E:103-115,115-123,206-213,214-223 2gk3 d2gk3a1 A:103-115,115-123,206-213,214-223 2gk3 d2gk3f1 F:103-115,115-123,206-213,214-223 1kxj d1kxjb_ B:65-77,78-84,165-170,171-176 1k9v d1k9vf_ F:365-377,378-384,465-470,471-476 1kxj d1kxja_ A:65-77,78-84,165-170,171-176 1qdl d1qdlb_ B:64-75,79-84,160-165,168-173 1gpw d1gpwb_ B:65-77,78-84,165-170,171-176 1gpw d1gpwf_ F:65-77,78-84,165-170,171-176 1gpw d1gpwd_ D:65-77,78-84,165-170,171-176 1ox6 d1ox6a2 A:64-76,77-83,175-185,186-191 2a9v d2a9vb1 B:58-73,74-80,152-157,160-165 1jvn d1jvnb2 B:64-76,77-83,175-185,186-191 1vco d1vcoa1 A:369-384,386-391,506-510,515-520 1ka9 d1ka9h_ H:63-75,77-82,165-170,171-176 2abw d2abwb1 B:66-80,82-87,183-188,189-194 1vcm d1vcma1 A:369-384,386-391,506-510,515-520 1ox5 d1ox5a2 A:64-76,78-83,175-185,186-191 1s1m d1s1ma1 A:357-372,374-379,499-503,508-513 1jvn d1jvna2 A:64-76,78-83,175-185,186-191 1ox4 d1ox4b2 B:64-76,78-83,175-185,186-191 1ox4 d1ox4a2 A:64-76,78-83,175-185,186-191 2abw d2abwa1 A:66-80,82-87,183-188,189-194 1ox5 d1ox5b2 B:64-76,78-83,175-185,186-191 1s1m d1s1mb1 B:355-372,374-379,499-503,508-513 1ox6 d1ox6b2 B:64-76,78-83,175-185,186-191 1vcn d1vcna1 A:369-384,386-391,506-510,515-520 2ghr d2ghra1 A:120-135,136-142,220-225,228-233 2nv0 d2nv0a1 A:60-72,73-79,157-162,163-168 1o1y d1o1ya_ A:64-81,83-88,160-165,166-171 1q7r d1q7ra_ A:59-71,72-78,156-161,162-167 1gpm d1gpma2 A:72-79,80-86,166-172,173-179 1gpm d1gpmd2 D:72-79,80-86,162-172,173-179 1gpm d1gpmc2 C:72-79,80-86,162-172,173-179 2nv0 d2nv0b1 B:60-72,73-79,157-162,163-168 1gpm d1gpmb2 B:72-79,80-86,162-172,173-179 1i7q d1i7qb_ B:65-76,80-85,157-163,164-170 2a9v d2a9vc1 C:58-73,74-80,148-157,160-165 2a9v d2a9vd1 D:58-73,74-80,148-157,160-165 1a9x d1a9xf2 F:5748-5762,5764-5769,5838-5843,5846-5851 2a9v d2a9va1 A:58-73,74-80,148-157,160-165 2ab0 d2ab0b1 B:85-99,100-107,143-149,150-156 2ab0 d2ab0a1 A:85-99,100-107,143-149,150-156 1ce8 d1ce8d2 D:248-262,264-269,338-343,346-351 1ce8 d1ce8b2 B:248-262,264-269,338-343,346-351 1m6v d1m6vd2 D:248-262,264-269,338-343,346-351 1ce8 d1ce8f2 F:248-262,264-269,338-343,346-351 1ce8 d1ce8h2 H:248-262,264-269,338-343,346-351 1c30 d1c30f2 F:248-262,264-269,338-343,346-351 1a9x d1a9xb2 B:1748-1762,1764-1769,1838-1843,1846-1851 1l9x d1l9xa_ A:81-101,105-110,205-209,213-218 1cs0 d1cs0f2 F:248-262,264-269,338-343,346-351 1l9x d1l9xd_ D:81-101,105-110,205-209,213-218 1jdb d1jdbf2 F:248-262,264-269,338-343,346-351 1a9x d1a9xd2 D:3748-3762,3764-3769,3838-3843,3846-3851 1l9x d1l9xc_ C:81-101,105-110,205-209,213-218 1m6v d1m6vf2 F:248-262,264-269,338-343,346-351 1l9x d1l9xb_ B:81-101,105-110,205-209,213-218 1i7q d1i7qd_ D:65-76,80-85,157-163,164-170 1c30 d1c30d2 D:248-262,264-269,338-343,346-351 1c3o d1c3of2 F:248-262,264-269,338-343,346-351 1bxr d1bxrd2 D:248-262,264-269,338-343,346-351 1i7s d1i7sd_ D:65-76,80-85,157-163,164-170 1cs0 d1cs0d2 D:248-262,264-269,338-343,346-351 1bxr d1bxrb2 B:248-262,264-269,338-343,346-351 1m6v d1m6vb2 B:248-262,264-269,338-343,346-351 1kwg d1kwga3 A:465-475,477-483,557-562,563-568 1bxr d1bxrf2 F:248-262,264-269,338-343,346-351 1kwk d1kwka3 A:465-475,477-483,557-562,563-568 1jdb d1jdbi2 I:248-262,264-269,338-343,346-351 1bxr d1bxrh2 H:248-262,264-269,338-343,346-351 1i7s d1i7sb_ B:65-76,80-85,157-163,164-170 1i1q d1i1qb_ B:63-74,78-83,154-160,161-167 2fex d2fexc1 C:82-94,95-101,144-148,149-154 1pv2 d1pv2a_ A:164-178,179-186,250-255,256-261 2fex d2fexa1 A:82-94,95-101,144-148,149-154 1t36 d1t36h2 H:249-262,264-269,334-343,346-351 1t36 d1t36f2 F:249-262,264-269,334-343,346-351 1t0b d1t0bb_ B:80-94,94-101,181-188,189-196 1t0b d1t0be_ E:80-94,94-101,181-188,189-196 1t0b d1t0ba_ A:80-94,94-101,181-188,189-196 1t0b d1t0bd_ D:80-94,94-101,181-188,189-196 1t0b d1t0bg_ G:80-94,94-101,181-188,189-196 1t0b d1t0bh_ H:80-94,94-101,181-188,189-196 1t0b d1t0bc_ C:80-94,94-101,181-188,189-196 1u9c d1u9ca_ A:105-119,120-126,190-195,196-201 1t0b d1t0bf_ F:80-94,94-101,181-188,189-196 1cs0 d1cs0h2 H:248-262,264-269,334-343,346-351 1cs0 d1cs0b2 B:248-262,264-269,334-343,346-351 1c3o d1c3ob2 B:248-262,264-269,334-343,346-351 1a9x d1a9xh2 H:7748-7762,7764-7769,7834-7843,7846-7851 1kee d1keeh2 H:248-262,264-269,334-343,346-351 1pdw d1pdwg_ G:3085-3099,3100-3106,3145-3150,3151-3156 1c3o d1c3od2 D:248-262,264-269,334-343,346-351 1c3o d1c3oh2 H:248-262,264-269,334-343,346-351 1kee d1keeb2 B:248-262,264-269,334-343,346-351 1c30 d1c30h2 H:248-262,264-269,334-343,346-351 1kee d1keed2 D:248-262,264-269,334-343,346-351 1t36 d1t36b2 B:249-262,264-269,334-343,346-351 1jdb d1jdbl2 L:248-262,264-269,334-343,346-351 1t36 d1t36d2 D:249-262,264-269,334-343,346-351 3bwe d3bwed1 D:685-699,700-706,745-750,751-756 1m6v d1m6vh2 H:248-262,264-269,334-343,346-351 1kee d1keef2 F:248-262,264-269,334-343,346-351 3bwe d3bwee1 E:885-899,900-906,945-950,951-956 2fex d2fexb1 B:82-94,95-101,144-148,149-154 1c30 d1c30b2 B:248-262,264-269,334-343,346-351 1jdb d1jdbc2 C:248-262,264-269,334-343,346-351 1pdw d1pdwa_ A:85-99,100-106,145-150,151-156 1pe0 d1pe0b_ B:285-299,300-306,345-350,351-356 1pdv d1pdva_ A:85-99,100-106,145-150,151-156 1pdw d1pdwe_ E:2085-2099,2100-2106,2145-2150,2151-2156 3bwe d3bwea1 A:85-99,100-106,145-150,151-156 2or3 d2or3b1 B:85-99,100-106,145-150,151-156 1qvv d1qvvc_ C:117-131,132-138,208-213,214-219 3bwe d3bweg1 G:1285-1299,1300-1306,1345-1350,1351-1356 1ucf d1ucfb_ B:85-99,100-106,145-150,151-156 2or3 d2or3a1 A:85-99,100-106,145-150,151-156 1j42 d1j42a_ A:85-99,100-106,145-150,151-156 1vhq d1vhqa_ A:117-131,132-138,181-186,187-193 1q2u d1q2ua_ A:85-99,100-106,145-150,151-156 1pdw d1pdwb_ B:285-299,300-306,345-350,351-356 1pdw d1pdwf_ F:2285-2299,2300-2306,2345-2350,2351-2356 1pe0 d1pe0a_ A:85-99,100-106,145-150,151-156 1p5f d1p5fa_ A:85-99,100-107,145-150,151-156 3bwe d3bwef1 F:1085-1099,1100-1106,1145-1150,1151-1156 1oy1 d1oy1c_ C:117-131,132-138,181-186,187-193 1pdw d1pdwc_ C:1085-1099,1100-1106,1145-1150,1151-1156 1ucf d1ucfa_ A:85-99,100-106,145-150,151-156 1qvv d1qvvd_ D:117-131,132-138,208-213,214-219 1qvw d1qvwa_ A:117-131,132-138,208-213,214-219 1qvw d1qvwb_ B:117-131,132-138,208-213,214-219 1qvz d1qvzb_ B:117-131,132-138,208-213,214-219 1qvv d1qvva_ A:117-131,132-138,208-213,214-219 1qvz d1qvza_ A:117-131,132-138,208-213,214-219 1vhq d1vhqb_ B:117-131,132-138,181-186,187-193 3bwe d3bwec1 C:485-499,501-506,545-550,551-556 1oy1 d1oy1b_ B:117-131,133-138,181-186,187-193 1oy1 d1oy1a_ A:117-131,133-138,181-186,187-193 1rw7 d1rw7a_ A:117-131,132-138,208-213,214-219 1oy1 d1oy1d_ D:117-131,133-138,181-186,187-193 1qvv d1qvvb_ B:117-131,132-138,208-213,214-219 1wl8 d1wl8a1 A:58-68,73-79,147-156,159-164 1pv2 d1pv2h_ H:164-178,179-186,249-255,256-262 1n57 d1n57a_ A:164-178,179-185,249-255,256-262 1pv2 d1pv2b_ B:164-178,179-186,249-255,256-262 1sy7 d1sy7a1 A:635-649,651-657,679-683,684-689 1sy7 d1sy7b1 B:635-649,651-657,679-683,684-689 1ons d1onsa_ A:163-177,178-185,248-254,255-261 1pv2 d1pv2e_ E:164-178,179-185,249-255,256-262 1g2i d1g2ic_ C:479-493,495-500,538-543,544-549 1g2i d1g2ib_ B:279-293,295-300,338-343,344-349 1g2i d1g2ia_ A:79-93,95-100,138-143,144-149 1oi4 d1oi4b1 B:304-318,320-325,363-368,370-375 1oi4 d1oi4a1 A:104-118,120-125,163-168,170-175 8. c.1.28 Radical SAM enzymes common Fe-S cluster and SAM binding sites are embedded into complete or incomplete beta/alpha-barrel ! TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 1tv7 d1tv7a_ A:173-188,190-195,238-244,247-254 2fb3 d2fb3a1 A:176-188,190-195,238-244,247-254 1tv8 d1tv8a_ A:176-188,190-195,238-244,247-254 2fb3 d2fb3b1 B:176-188,190-195,238-245,246-254 1tv8 d1tv8b_ B:176-188,190-195,238-245,246-254 1tv7 d1tv7b_ B:176-188,190-196,238-244,247-254 15. c.52.4 TBP-interacting protein-like contains extra C-terminal alpha+beta domain of complex fold with an embeded C2H2 zinc-finger Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest 2czr d2czra1 A:49-59,63-69,75-79,80-85 19. c.87.1 UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase consists of two non-similar domains with 3 layers (a/b/a) each ! domain 1: parallel beta-sheet of 7 strands, order 3214567 ! domain 2: parallel beta-sheet of 6 strands, order 321456 1gz5 d1gz5a_ A:21-35,35-42,52-58,59-66 1gz5 d1gz5b_ B:21-35,35-42,52-58,59-66 1gz5 d1gz5d_ D:21-35,35-42,52-58,59-66 1gz5 d1gz5c_ C:21-35,35-42,52-58,59-66 1uqt d1uqtb_ B:21-34,35-41,52-58,59-65 1uqt d1uqta_ A:21-34,35-42,52-58,59-66 1uqu d1uqua_ A:21-34,35-42,52-58,59-66 1uqu d1uqub_ B:21-34,35-42,52-58,59-66 1rzu d1rzub_ B:17-34,35-43,66-76,77-85 1rzv d1rzvb_ B:17-34,35-43,65-76,77-85 1rzv d1rzva_ A:17-34,35-43,65-76,77-85 1rzu d1rzua_ A:17-34,35-43,65-76,77-85 2asv d2asva1 A:112-130,132-139,194-208,213-224 2asv d2asvb1 B:112-130,132-139,194-208,213-224 1l5w d1l5wb_ B:112-130,132-139,194-208,213-224 1l5w d1l5wa_ A:112-130,132-139,194-208,213-224 1e4o d1e4ob_ B:113-130,132-139,194-208,213-224 1e4o d1e4oa_ A:113-130,132-139,194-208,213-224 1qm5 d1qm5b_ B:112-130,132-139,194-208,213-224 1qm5 d1qm5a_ A:112-130,132-139,194-208,213-224 2bis d2bisc1 C:16-33,34-42,58-71,72-80 1l5v d1l5va_ A:112-130,132-139,194-208,213-224 2ieg d2iegb1 B:133-151,153-160,216-232,237-248 1ygp d1ygpb_ B:134-151,153-160,218-232,237-248 2ieg d2iega1 A:133-151,153-160,216-232,237-248 2av6 d2av6a1 A:112-130,132-139,194-208,213-224 1ahp d1ahpa_ A:113-130,132-139,194-208,213-224 1ahp d1ahpb_ B:113-130,132-139,194-208,213-224 2aw3 d2aw3a1 A:112-130,132-139,194-208,213-224 1l5v d1l5vb_ B:112-130,132-139,194-208,213-224 2azd d2azda1 A:112-130,132-139,194-208,213-224 2av6 d2av6b1 B:112-130,132-139,194-208,213-224 1l6i d1l6ia_ A:112-130,132-139,194-208,213-224 2iei d2ieib1 B:133-151,153-160,216-232,237-248 1l6i d1l6ib_ B:112-130,132-139,194-208,213-224 2zb2 d2zb2b1 B:133-151,153-160,216-232,237-248 2aw3 d2aw3b1 B:112-130,132-139,194-208,213-224 2iei d2ieia1 A:133-151,153-160,216-232,237-248 2zb2 d2zb2a1 A:133-151,153-160,216-232,237-248 2gm9 d2gm9a1 A:133-151,153-160,216-232,237-248 2bis d2bisb1 B:16-33,34-42,58-71,72-80 3cej d3cejb1 B:133-151,153-160,216-232,237-248 1l5r d1l5rb_ B:133-151,153-160,216-232,237-248 2azd d2azdb1 B:112-130,132-139,194-208,213-224 1l5r d1l5ra_ A:133-151,153-160,216-232,237-248 2ecp d2ecpa_ A:133-151,153-160,218-232,237-248 2qrq d2qrqa1 A:133-151,153-160,216-232,237-249 1bx3 d1bx3a_ A:133-151,153-160,216-232,237-249 1l5s d1l5sb_ B:133-151,153-160,216-232,237-248 1l5s d1l5sa_ A:133-151,153-160,216-232,237-248 1z6q d1z6qa1 A:134-151,153-160,216-232,237-248 1fc0 d1fc0a_ A:133-151,153-160,216-232,237-248 2pyd d2pyda1 A:133-151,153-160,216-232,237-249 1em6 d1em6a_ A:133-151,153-160,216-232,237-249 1em6 d1em6b_ B:133-151,153-160,216-232,237-249 7gpb d7gpbd_ D:134-151,153-160,216-232,237-248 1l7x d1l7xa_ A:133-151,153-160,216-232,237-248 1exv d1exva_ A:133-151,153-160,216-232,237-248 1z6p d1z6pa1 A:133-151,153-160,216-232,237-248 1exv d1exvb_ B:133-151,153-160,216-232,237-248 2ecp d2ecpb_ B:133-151,153-160,218-232,237-248 2qrp d2qrpa1 A:133-151,153-160,216-232,237-249 2ati d2atia1 A:133-151,153-160,216-232,237-248 1l5q d1l5qa_ A:133-151,153-160,216-232,237-248 1fc0 d1fc0b_ B:1133-1151,1153-1160,1216-1232,1237-1248 2qll d2qlla1 A:134-151,153-160,216-232,237-248 1abb d1abbd_ D:134-151,153-160,216-232,237-248 1l5q d1l5qb_ B:133-151,153-160,216-232,237-248 3cej d3ceja1 A:133-151,153-160,216-232,237-248 2pyi d2pyia1 A:133-151,153-160,216-232,237-249 1a8i d1a8ia_ A:133-151,153-160,216-232,237-248 1l7x d1l7xb_ B:133-151,153-160,216-232,237-248 1p4h d1p4ha_ A:133-151,153-160,216-232,237-248 3cem d3cema1 A:133-151,153-160,216-232,237-248 1abb d1abbb_ B:133-151,153-160,216-232,237-248 1xl1 d1xl1a1 A:133-151,153-160,216-232,237-248 1xkx d1xkxa1 A:133-151,153-160,216-232,237-248 2gpn d2gpna_ A:133-151,153-160,216-232,237-249 1xl0 d1xl0a1 A:133-151,153-160,216-232,237-248 1axr d1axra_ A:133-151,153-160,216-232,237-248 3cem d3cemb1 B:133-151,153-160,216-232,237-248 2f3p d2f3pa1 A:133-151,153-160,216-232,237-248 1fa9 d1fa9a_ A:133-151,153-160,216-232,237-248 1p4g d1p4ga_ A:133-151,153-160,216-232,237-248 2ff5 d2ff5a1 A:133-151,153-160,216-232,237-248 1c8l d1c8la_ A:133-151,153-160,216-232,237-248 9gpb d9gpbb_ B:134-151,153-160,216-232,237-248 4gpb d4gpba_ A:133-151,153-160,216-232,237-248 1b4d d1b4da_ A:133-151,153-160,216-232,237-249 2gj4 d2gj4a1 A:133-151,153-160,216-232,237-248 1z62 d1z62a1 A:133-151,153-160,216-232,237-248 2ati d2atib1 B:133-151,153-160,216-232,237-248 1e1y d1e1ya_ A:133-151,153-160,216-232,237-248 6gpb d6gpba_ A:133-151,153-160,216-232,237-248 3amv d3amva_ A:133-151,153-160,216-232,237-248 1pyg d1pyga_ A:133-151,153-160,216-232,237-248 1kti d1ktia_ A:133-151,153-160,216-232,237-248 1wv1 d1wv1a1 A:133-151,153-160,216-232,237-248 2qn2 d2qn2a1 A:133-151,153-160,216-232,237-248 1k08 d1k08a_ A:133-151,153-160,216-232,237-248 1uzu d1uzua_ A:133-151,153-160,216-232,237-248 3ceh d3cehb1 B:133-151,153-160,216-232,237-248 2amv d2amva_ A:133-151,153-160,216-232,237-248 2gpa d2gpaa_ A:133-151,153-160,216-232,237-248 1c8k d1c8ka_ A:133-151,153-160,216-232,237-248 1p29 d1p29a_ A:133-151,153-160,216-232,237-248 1h5u d1h5ua_ A:133-151,153-160,216-232,237-248 1p2d d1p2da_ A:133-151,153-160,216-232,237-248 2off d2offa1 A:133-151,153-160,216-232,237-248 2f3s d2f3sa1 A:133-151,153-160,216-232,237-248 2fet d2feta1 A:133-151,153-160,216-232,237-248 1gpa d1gpac_ C:134-151,153-160,216-232,237-248 2qn7 d2qn7a1 A:133-151,153-160,216-232,237-248 1noi d1noib_ B:134-151,153-160,216-232,237-248 2f3u d2f3ua1 A:133-151,153-160,216-232,237-248 1p2b d1p2ba_ A:133-151,153-160,216-232,237-248 2qn9 d2qn9a1 A:133-151,153-160,216-232,237-248 1ww2 d1ww2a1 A:133-151,153-160,216-232,237-248 1p2g d1p2ga_ A:133-151,153-160,216-232,237-248 1ygp d1ygpa_ A:134-151,153-160,218-232,237-248 1k06 d1k06a_ A:133-151,153-160,216-232,237-248 2qln d2qlna1 A:133-151,153-160,216-232,237-248 3ceh d3ceha1 A:133-151,153-160,216-232,237-248 2f3q d2f3qa1 A:133-151,153-160,216-232,237-248 2qnb d2qnba1 A:133-151,153-160,216-232,237-248 2qn1 d2qn1a1 A:133-151,153-160,216-232,237-248 2g9q d2g9qa1 A:133-151,153-160,216-232,237-248 2pri d2pria_ A:133-151,153-160,216-232,237-248 1ww3 d1ww3a1 A:133-151,153-160,216-232,237-248 1wuy d1wuya1 A:133-151,153-160,216-232,237-248 1wut d1wuta1 A:133-151,153-160,216-232,237-248 2qlm d2qlma1 A:133-151,153-160,216-232,237-248 1pyg d1pygc_ C:133-151,153-160,216-232,237-248 1fu4 d1fu4a_ A:133-151,153-160,216-232,237-248 1c50 d1c50a_ A:133-151,153-160,216-232,237-248 1p4j d1p4ja_ A:133-151,153-160,216-232,237-248 2qrh d2qrha1 A:133-151,153-160,216-232,237-248 1lwo d1lwoa_ A:133-151,153-160,216-232,237-248 1fs4 d1fs4a_ A:133-151,153-160,216-232,237-248 1noi d1noid_ D:134-151,153-160,216-232,237-248 1fu8 d1fu8a_ A:133-151,153-160,216-232,237-248 1ftw d1ftwa_ A:133-151,153-160,216-232,237-248 1xc7 d1xc7a1 A:133-151,153-160,216-232,237-248 2qn8 d2qn8a1 A:133-151,153-160,216-232,237-248 2g9r d2g9ra1 A:133-151,153-160,216-232,237-248 2prj d2prja_ A:133-151,153-160,216-232,237-248 1wv0 d1wv0a1 A:133-151,153-160,216-232,237-248 3gpb d3gpba_ A:133-151,153-160,216-232,237-248 1gfz d1gfza_ A:133-151,153-160,216-232,237-248 2qrg d2qrga1 A:133-151,153-160,216-232,237-248 1fu7 d1fu7a_ A:133-151,153-160,216-232,237-248 2qrm d2qrma1 A:133-151,153-160,216-232,237-248 2ske d2skea_ A:133-151,153-160,216-232,237-248 1noi d1noia_ A:133-151,153-160,216-232,237-248 2skc d2skca_ A:133-151,153-160,216-232,237-248 2skd d2skda_ A:133-151,153-160,216-232,237-248 1fty d1ftya_ A:133-151,153-160,216-232,237-248 1ggn d1ggna_ A:133-151,153-160,216-232,237-248 1hlf d1hlfa_ A:133-151,153-160,216-232,237-248 1gg8 d1gg8a_ A:133-151,153-160,216-232,237-248 2qn3 d2qn3a1 A:133-151,153-160,216-232,237-248 1lwn d1lwna_ A:133-151,153-160,216-232,237-248 1gpb d1gpba_ A:133-151,153-160,216-232,237-248 2g9u d2g9ua1 A:133-151,153-160,216-232,237-248 2g9v d2g9va1 A:133-151,153-160,216-232,237-248 1noi d1noic_ C:133-151,153-160,216-232,237-248 1ftq d1ftqa_ A:133-151,153-160,216-232,237-248 1nok d1noka_ A:133-151,153-160,216-232,237-248 8gpb d8gpba_ A:133-151,153-160,216-232,237-248 1pyg d1pygd_ D:134-151,153-160,216-232,237-248 2gpb d2gpba_ A:133-151,153-160,216-232,237-248 1noj d1noja_ A:133-151,153-160,216-232,237-248 1gpy d1gpya_ A:133-151,153-160,216-232,237-248 5gpb d5gpba_ A:133-151,153-160,216-232,237-248 1pyg d1pygb_ B:133-151,153-160,216-232,237-248 1gpa d1gpab_ B:134-151,153-160,216-232,237-248 1abb d1abbc_ C:134-151,153-160,216-232,237-248 9gpb d9gpba_ A:133-151,153-160,216-232,237-248 9gpb d9gpbc_ C:133-151,153-160,216-232,237-249 7gpb d7gpba_ A:133-151,153-160,216-232,237-248 7gpb d7gpbb_ B:134-151,153-160,216-232,237-248 1abb d1abba_ A:134-151,153-160,216-232,237-248 1gpa d1gpaa_ A:133-151,153-160,216-232,237-248 1gpa d1gpad_ D:134-151,153-160,216-232,237-248 7gpb d7gpbc_ C:133-151,153-160,216-232,237-248 9gpb d9gpbd_ D:133-151,153-160,216-232,237-248 2bis d2bisa1 A:16-33,34-42,58-71,72-81 2qll d2qlla1 A:47-78,153-160,216-232,237-248 1gpa d1gpaa_ A:47-78,153-160,216-232,237-248 1gpa d1gpad_ D:47-78,153-160,216-232,237-248 9gpb d9gpbd_ D:64-78,153-160,216-232,237-248 1e1y d1e1ya_ A:47-78,153-160,216-232,237-248 7gpb d7gpbc_ C:47-78,153-160,216-232,237-248 2g9v d2g9va1 A:63-78,153-160,216-232,237-248 1ygp d1ygpb_ B:47-78,153-160,218-232,237-248 1p4h d1p4ha_ A:63-78,153-160,216-232,237-248 1c8k d1c8ka_ A:63-78,153-160,216-232,237-248 2gpa d2gpaa_ A:47-78,153-160,216-232,237-248 1hlf d1hlfa_ A:63-78,153-160,216-232,237-248 1k06 d1k06a_ A:63-78,153-160,216-232,237-248 2f3u d2f3ua1 A:63-78,153-160,216-232,237-248 1k08 d1k08a_ A:63-78,153-160,216-232,237-248 2g9r d2g9ra1 A:63-78,153-160,216-232,237-248 1z62 d1z62a1 A:63-78,153-160,216-232,237-248 2qrh d2qrha1 A:63-78,153-160,216-232,237-248 2f3q d2f3qa1 A:63-78,153-160,216-232,237-248 2qlm d2qlma1 A:63-78,153-160,216-232,237-248 2qnb d2qnba1 A:63-78,153-160,216-232,237-248 2qln d2qlna1 A:63-78,153-160,216-232,237-248 1b4d d1b4da_ A:63-78,153-160,216-232,237-249 1p4j d1p4ja_ A:63-78,153-160,216-232,237-248 1em6 d1em6a_ A:63-78,153-160,216-232,237-249 2qn1 d2qn1a1 A:63-78,153-160,216-232,237-248 2pyi d2pyia1 A:63-78,153-160,216-232,237-249 1em6 d1em6b_ B:63-78,153-160,216-232,237-249 1ww2 d1ww2a1 A:63-78,153-160,216-232,237-248 1p2d d1p2da_ A:63-78,153-160,216-232,237-248 2ieg d2iega1 A:63-78,153-160,216-232,237-248 1pyg d1pygc_ C:47-78,153-160,216-232,237-248 1ww3 d1ww3a1 A:63-78,153-160,216-232,237-248 1noj d1noja_ A:63-78,153-160,216-232,237-248 3gpb d3gpba_ A:63-78,153-160,216-232,237-248 2pyd d2pyda1 A:63-78,153-160,216-232,237-249 2qrq d2qrqa1 A:63-78,153-160,216-232,237-249 2gj4 d2gj4a1 A:63-78,153-160,216-232,237-248 2gpn d2gpna_ A:63-78,153-160,216-232,237-249 2asv d2asva1 A:30-50,132-139,194-208,213-224 2asv d2asvb1 B:30-50,132-139,194-208,213-224 1e4o d1e4oa_ A:30-50,132-139,194-208,213-224 1e4o d1e4ob_ B:30-50,132-139,194-208,213-224 1l6i d1l6ib_ B:30-50,132-139,194-208,213-224 1l5w d1l5wa_ A:30-50,132-139,194-208,213-224 1l6i d1l6ia_ A:30-50,132-139,194-208,213-224 1l5v d1l5va_ A:30-50,132-139,194-208,213-224 2av6 d2av6a1 A:30-50,132-139,194-208,213-224 2ecp d2ecpa_ A:47-71,153-160,218-232,237-248 2aw3 d2aw3a1 A:30-50,132-139,194-208,213-224 2ecp d2ecpb_ B:47-71,153-160,218-232,237-248 1qm5 d1qm5a_ A:30-50,132-139,194-208,213-224 1qm5 d1qm5b_ B:30-50,132-139,194-208,213-224 7gpb d7gpba_ A:60-78,153-160,216-232,237-248 7gpb d7gpbb_ B:60-78,153-160,216-232,237-248 9gpb d9gpba_ A:60-78,153-160,216-232,237-248 27. c.6.2 Glycoside hydrolase/deacetylase in the different families beta-barrels are similarly distorted but may vary in the number of strands ! 7-stranded beta/alpha barrel variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=7, S=8; strand order 1234567; some members may have fewer strands 1k1w d1k1wa3 A:127-138,140-145,162-168,169-177 1k1y d1k1ya3 A:127-138,140-145,162-168,169-177 1k1y d1k1yb3 B:127-138,140-145,162-168,169-177 1k1x d1k1xa3 A:127-138,140-146,162-168,169-178 1k1x d1k1xb3 B:127-138,140-145,162-168,169-177 1hww d1hwwa3 A:209-220,222-227,243-249,257-264 1ps3 d1ps3a3 A:209-220,222-227,243-249,257-264 1qwu d1qwua3 A:209-220,222-227,243-249,257-264 1hxk d1hxka3 A:209-220,222-227,243-249,257-264 1hty d1htya3 A:209-220,222-227,243-249,257-264 2ow7 d2ow7a3 A:209-220,222-227,243-249,257-264 3d51 d3d51a3 A:209-220,222-227,243-249,257-264 1r34 d1r34a3 A:209-220,222-227,243-249,257-264 2f18 d2f18a3 A:209-220,222-227,243-249,257-264 2f7p d2f7pa3 A:209-220,222-227,243-249,257-264 3blb d3blba3 A:209-220,222-227,243-249,257-264 2f7o d2f7oa3 A:209-220,222-227,243-249,257-264 2f1b d2f1ba3 A:209-220,222-227,243-249,257-264 3d4y d3d4ya3 A:209-220,222-227,243-249,257-264 1qx1 d1qx1a3 A:209-220,222-227,243-249,257-264 2f7r d2f7ra3 A:209-220,222-227,243-249,257-264 3bvu d3bvua3 A:209-220,222-227,243-249,257-264 3d52 d3d52a3 A:209-220,222-227,243-249,257-264 1tqs d1tqsa3 A:209-220,222-227,243-249,257-264 1tqw d1tqwa3 A:209-220,222-227,243-249,257-264 3bvt d3bvta3 A:209-220,222-227,243-249,257-264 2f1a d2f1aa3 A:209-220,222-227,243-249,257-264 3bvx d3bvxa3 A:209-220,222-227,243-249,257-264 3bvv d3bvva3 A:209-220,222-227,243-249,257-264 3czs d3czsa3 A:209-220,222-227,243-249,257-264 1r33 d1r33a3 A:209-220,222-227,243-249,257-264 3bub d3buba3 A:209-220,222-227,243-249,257-264 1tqv d1tqva3 A:209-220,222-227,243-249,257-264 3czn d3czna3 A:209-220,222-227,243-249,257-264 1qwn d1qwna3 A:209-220,222-227,243-249,257-264 3d50 d3d50a3 A:209-220,222-227,243-249,257-264 3cv5 d3cv5a3 A:209-220,222-227,243-249,257-264 2ow6 d2ow6a3 A:209-220,222-227,243-249,257-264 3ddf d3ddfa3 A:209-220,222-227,243-249,257-264 3bvw d3bvwa3 A:209-220,222-227,243-249,257-264 3d4z d3d4za3 A:209-220,222-227,243-249,257-264 3ddg d3ddga3 A:209-220,222-227,243-249,257-264 2alw d2alwa3 A:209-220,222-227,243-249,257-264 1tqt d1tqta3 A:209-220,222-227,243-249,257-264 3bud d3buda3 A:209-220,222-227,243-249,257-264 2f7q d2f7qa3 A:209-220,222-227,243-249,257-264 3bui d3buia3 A:209-220,222-227,243-249,257-264 3buq d3buqa3 A:209-220,222-227,243-249,257-264 1tqu d1tqua3 A:209-220,222-227,243-249,257-264 2fyv d2fyva3 A:209-220,222-227,243-249,257-264 3bup d3bupa3 A:209-220,222-227,243-249,257-264 2b5d d2b5dx2 X:189-200,202-207,225-229,231-237 1o7d d1o7d.3 A:201-212,214-219,235-241,250-257 1ufa d1ufaa2 A:207-216,218-223,253-257,259-265 28. e.1.1 Serpins Serpins contains a cluster of helices and a beta-sandwich 1imv d1imva_ A:61-76,184-194,296-305,332-345 1dvm d1dvmb_ B:35-50,162-173,278-286,318-328 1db2 d1db2b_ B:35-50,162-172,277-286,317-329 1oc0 d1oc0a_ A:35-50,162-172,277-286,317-329 1db2 d1db2a_ A:35-50,162-172,277-286,317-329 1sng d1snga_ A:35-50,155-165,258-267,296-308 2beh d2behi1 I:79-94,212-222,322-331,365-376 1oo8 d1oo8a_ A:53-68,181-191,290-298,330-341 1oyh d1oyhi_ I:79-94,212-221,322-331,365-376 1b3k d1b3kd_ D:35-50,162-172,277-286,318-329 1b3k d1b3ka_ A:35-50,162-172,277-286,318-329 1dvm d1dvmd_ D:35-50,162-172,277-286,318-329 1ova d1ovad_ D:53-68,181-193,290-298,330-341 1b3k d1b3kb_ B:35-50,162-172,277-286,318-329 1b3k d1b3kc_ C:35-50,162-172,277-286,318-329 1psi d1psia_ A:53-68,181-191,290-299,330-341 1uhg d1uhgc_ C:30-45,171-183,284-292,324-335 1uhg d1uhgd_ D:30-45,171-183,284-292,324-335 1by7 d1by7a_ A:31-46,195-205,311-320,351-363 1ova d1ovab_ B:53-68,181-193,290-299,330-341 1e04 d1e04i_ I:79-94,212-224,322-331,364-376 1dvm d1dvmc_ C:35-50,162-173,277-286,318-329 1jmj d1jmja_ A:135-150,267-279,377-386,413-428 1ova d1ovac_ C:53-68,181-193,290-299,330-341 2gd4 d2gd4c1 C:79-94,212-223,322-331,364-376 2gd4 d2gd4i1 I:79-94,212-223,322-331,364-376 1uhg d1uhgb_ B:30-45,171-183,284-293,324-335 1uhg d1uhga_ A:30-45,171-183,284-292,324-335 1ova d1ovaa_ A:53-68,181-193,290-299,330-341 1azx d1azxi_ I:79-94,212-223,322-331,365-376 1e03 d1e03i_ I:79-94,212-224,322-331,365-376 1sr5 d1sr5a_ A:79-94,212-223,322-331,365-376 2hij d2hiji1 I:79-94,212-224,322-331,365-376 1dvm d1dvma_ A:35-50,162-173,277-286,318-329 1dzh d1dzhi_ I:79-94,212-223,322-331,365-376 1ath d1atha_ A:79-94,212-224,322-331,364-376 1tb6 d1tb6i_ I:79-94,212-223,322-331,365-376 1kct d1kcta_ A:53-69,181-192,292-300,329-340 1oph d1opha_ A:53-69,181-191,290-298,330-341 1atu d1atua_ A:53-69,182-192,290-299,330-341 1ant d1anti_ I:79-94,212-223,322-331,365-376 2ant d2anti_ I:79-94,212-224,322-331,364-377 2b4x d2b4xi1 I:79-94,212-223,322-331,365-377 1e05 d1e05i_ I:79-94,212-224,322-331,364-377 1nq9 d1nq9i_ I:79-94,212-224,322-331,365-377 1hp7 d1hp7a_ A:53-69,181-192,290-298,330-341 1t1f d1t1fb1 B:79-94,212-224,322-331,365-377 1t1f d1t1fc1 C:79-94,212-224,322-331,365-377 1t1f d1t1fa1 A:79-94,212-224,322-331,365-377 3evj d3evji1 I:79-94,212-226,322-331,365-377 1jmj d1jmjb_ B:135-150,267-279,377-386,416-428 2b5t d2b5ti1 I:79-94,212-224,322-327,365-377 1xqg d1xqga_ A:31-47,158-169,275-283,316-327 1xqg d1xqgb_ B:31-47,158-169,275-283,316-327 1jmo d1jmoa_ A:135-150,267-278,377-386,417-427 1xqj d1xqja_ A:31-47,158-169,275-283,316-327 1k9o d1k9oi_ I:46-62,171-183,283-291,325-336 1qlp d1qlpa_ A:53-69,181-191,290-298,331-341 1sek d1seka_ A:46-62,171-183,283-291,325-336 1dzg d1dzgi_ I:79-94,212-224,322-330,367-377 30. d.333.1 UbiD C-terminal domain-like UbiD C-terminal domain-like alpha-beta(2)-alpha-beta-alpha-beta(2); 3 layers, a/b/a; mixed beta-sheet, order: 12354, strands 2,3 and 5 are parallel to each other 2idb d2idbb2 B:376-390,396-403,426-437,446-456 2idb d2idba2 A:376-390,396-403,427-437,446-456 2idb d2idbc2 C:376-390,396-403,426-437,446-456 31. e.52.1 NAD kinase/diacylglycerol kinase-like NAD kinase/diacylglycerol kinase-like 2 domains: d1 [alpha/beta; related to the PFK N-terminal domain (scop_sf 53784)]; d2 [all-beta; atypical beta-sandwich made of 4 structural repeats of beta(3) unit] 1y3i d1y3ia1 A:84-99,101-105,133-139,278-284 1z0z d1z0zd1 D:48-60,63-69,96-101,228-233 1z0z d1z0zb1 B:48-60,63-69,96-101,228-233 1y3i d1y3ib1 B:84-99,101-107,133-139,278-284 1z0s d1z0sb1 B:48-60,63-69,96-102,227-233 1z0s d1z0sd1 D:48-60,63-69,96-102,227-233 1z0z d1z0zc1 C:48-60,63-69,96-102,227-233 1z0s d1z0sc1 C:48-60,63-69,96-102,227-233 1z0z d1z0za1 A:48-60,63-69,96-102,227-233 1z0s d1z0sa1 A:48-60,63-69,96-102,227-233 1suw d1suwd_ D:48-60,63-69,96-102,227-233 1z0u d1z0ua1 A:48-60,63-69,96-102,227-233 1suw d1suwb_ B:48-60,63-69,96-102,227-233 1z0u d1z0ub1 B:48-59,63-69,96-102,227-233 1suw d1suwa_ A:48-60,63-69,96-102,227-233 1suw d1suwc_ C:48-60,63-69,96-102,227-233 32. d.112.1 Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein beta-alpha(2)-beta(3)-alpha(3); 3 layers, alpha/beta/alpha; mixed sheet: order 1342; loop crossing 1a6j d1a6ja_ A:46-62,68-78,83-90,105-114 1a3a d1a3ab_ B:39-53,60-65,77-84,99-106 1xiz d1xizb_ B:40-53,61-67,75-85,102-110 1a3a d1a3aa_ A:39-54,60-65,77-84,99-106 1xiz d1xiza_ A:40-53,61-67,75-85,102-110 1a6j d1a6jb_ B:46-61,68-78,83-91,105-115 1hyn d1hynq_ Q:146-159,225-235,239-247,261-271 1hyn d1hynp_ P:146-159,225-235,239-248,261-271 1hyn d1hyns_ S:146-159,225-235,239-248,261-271 1hyn d1hynr_ R:146-159,224-236,239-248,261-271 33. c.45.1 (Phosphotyrosine protein) phosphatases II share with the family I the common active site structure with a circularly permuted topology ! (Phosphotyrosine protein) phosphatases II core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 1423 2shp d2shpa1 A:334-349,351-357,395-406,411-421 2shp d2shpb1 B:334-349,351-357,395-406,411-421 1ytw d1ytwa_ A:263-278,281-286,326-338,343-352 1gwz d1gwza_ A:330-345,347-353,391-401,407-417 1xxp d1xxpa1 A:263-278,281-286,326-338,343-352 1xxp d1xxpb1 B:263-278,281-286,326-338,343-352 1lar d1lara1 A:1401-1416,1418-1423,1461-1472,1477-1486 1rpm d1rpmb_ B:975-990,992-997,1034-1045,1050-1059 1rpm d1rpma_ A:975-990,992-997,1034-1045,1050-1059 1lar d1larb1 B:1401-1416,1418-1423,1461-1472,1477-1486 1fpr d1fpra_ A:333-345,347-354,391-402,408-417 1jln d1jlna_ A:361-376,378-384,419-430,431-442 1p15 d1p15b_ B:602-617,619-624,662-673,678-687 1ypt d1yptb_ B:263-278,280-286,326-339,342-352 1kak d1kaka_ A:88-103,105-111,152-164,165-177 1q6s d1q6sb_ B:1088-1103,1105-1111,1152-1164,1165-1177 1g4w d1g4wr2 R:353-368,368-375,414-425,426-437 1bzj d1bzja_ A:88-103,105-111,152-164,165-177 1oet d1oeta_ A:88-103,105-110,152-164,165-177 2cma d2cmaa1 A:88-103,105-111,152-164,165-177 1c86 d1c86a_ A:88-103,105-111,152-164,165-177 1oem d1oemx_ X:88-103,105-111,152-164,165-177 1nwl d1nwla_ A:88-103,105-110,152-164,165-177 1pa1 d1pa1a_ A:588-603,605-611,652-664,665-677 1bzc d1bzca_ A:88-103,105-111,152-164,165-177 2b07 d2b07a1 A:88-103,105-111,152-164,165-177 1no6 d1no6a_ A:88-103,105-110,152-164,165-177 1q6t d1q6tb_ B:1088-1103,1105-1111,1152-1164,1165-1177 1t49 d1t49a_ A:88-103,105-110,152-164,165-177 1q6t d1q6ta_ A:588-603,605-611,652-664,665-677 2azr d2azra1 A:88-103,105-111,152-164,165-177 1p15 d1p15a_ A:602-617,619-624,662-673,675-687 1ecv d1ecva_ A:88-103,105-111,152-164,165-177 1c83 d1c83a_ A:88-103,105-111,152-164,165-177 1q6s d1q6sa_ A:588-603,605-610,652-664,665-677 2cm3 d2cm3b1 B:88-103,105-110,152-164,165-177 2h4g d2h4ga1 A:88-103,105-111,152-164,165-177 1t48 d1t48a_ A:88-103,105-110,152-164,165-177 2cm7 d2cm7a1 A:88-103,105-111,152-164,165-177 1q6p d1q6pb_ B:1088-1103,1105-1111,1152-1164,1165-1177 1pty d1ptya_ A:88-103,105-111,152-164,165-177 1kav d1kava_ A:88-103,105-111,152-164,165-177 1a5y d1a5ya_ A:88-103,105-110,152-164,165-177 2cm3 d2cm3a1 A:88-103,105-110,152-164,165-177 2hb1 d2hb1a1 A:88-103,105-111,152-164,165-177 1onz d1onza_ A:88-103,105-110,152-164,165-177 1oev d1oeva_ A:88-103,105-110,152-164,165-177 1jf7 d1jf7a_ A:88-103,105-110,152-164,165-177 1gfy d1gfya_ A:88-103,105-111,152-164,165-177 1aax d1aaxa_ A:88-103,105-111,152-164,165-177 1g7f d1g7fa_ A:88-103,105-110,152-164,165-177 2cm8 d2cm8a1 A:88-103,105-111,152-164,165-177 1l8g d1l8ga_ A:88-103,105-111,152-164,165-177 1oeo d1oeox_ X:88-103,105-110,152-164,165-177 1c88 d1c88a_ A:88-103,105-111,152-164,165-177 1t4j d1t4ja_ A:88-103,105-110,152-164,165-177 2bge d2bgea1 A:88-103,105-111,152-164,165-177 2bgd d2bgda1 A:88-103,105-111,152-164,165-177 1sug d1suga_ A:88-103,105-110,152-164,165-177 2f6y d2f6ya1 A:88-103,105-111,152-164,165-177 1q6m d1q6ma_ A:88-103,105-111,152-164,165-177 1xbo d1xboa_ A:88-103,105-111,152-164,165-177 2f70 d2f70a1 A:88-103,105-111,152-164,165-177 1q6n d1q6na_ A:588-603,605-611,652-664,665-677 2cm2 d2cm2a1 A:88-103,105-110,152-164,165-177 2f6v d2f6va1 A:88-103,105-110,152-164,165-177 1q6n d1q6nb_ B:1088-1103,1105-1110,1152-1164,1165-1177 2f6t d2f6ta1 A:88-103,105-110,152-164,165-177 1nwe d1nwea_ A:88-103,105-110,152-164,165-177 1een d1eena_ A:88-103,105-110,152-164,165-177 1qxk d1qxka_ A:88-103,105-110,152-164,165-177 1q6p d1q6pa_ A:588-603,605-611,652-664,665-677 2b4s d2b4sa1 A:88-103,105-111,152-164,165-177 1pxh d1pxha_ A:88-103,105-111,152-164,165-177 2f6w d2f6wa1 A:88-103,105-111,152-164,165-177 2f6z d2f6za1 A:88-103,105-110,152-164,165-177 1ph0 d1ph0a_ A:88-103,105-110,152-164,165-177 1ptv d1ptva_ A:88-103,105-111,152-164,165-177 1c87 d1c87a_ A:88-103,105-111,152-164,165-177 1oes d1oesa_ A:88-103,105-111,152-164,165-177 1eeo d1eeoa_ A:88-103,105-110,152-164,165-177 1q6j d1q6ja_ A:88-103,105-111,152-164,165-177 1q1m d1q1ma_ A:88-103,105-111,152-164,165-177 2cne d2cnea1 A:88-103,105-111,152-164,165-177 2cnf d2cnfa1 A:88-103,105-111,152-164,165-177 2h4k d2h4ka1 A:88-103,105-111,152-164,165-177 2cmb d2cmba1 A:88-103,105-110,152-164,165-177 2cng d2cnga1 A:88-103,105-110,152-164,165-177 1c85 d1c85a_ A:88-103,105-110,152-164,165-177 2f71 d2f71a1 A:88-103,105-110,152-164,165-177 1lqf d1lqfc_ C:588-603,605-610,652-664,665-677 1ptt d1ptta_ A:88-103,105-111,152-164,165-177 2cni d2cnia1 A:88-103,105-111,152-164,165-177 1lqf d1lqfd_ D:588-603,605-610,652-664,665-677 1ptu d1ptua_ A:88-103,105-111,152-164,165-177 2cnh d2cnha1 A:88-103,105-111,152-164,165-177 1g7g d1g7ga_ A:88-103,105-111,152-164,165-177 1lqf d1lqfa_ A:588-603,605-610,652-664,665-677 1lqf d1lqfb_ B:588-603,605-610,652-664,665-677 1g4u d1g4us2 S:353-368,368-375,414-425,426-437 1lar d1larb2 B:1690-1705,1707-1712,1750-1762,1763-1775 2cmc d2cmca1 A:88-103,105-111,152-164,165-177 1l8k d1l8ka_ A:90-105,107-112,153-165,166-178 1g1f d1g1fa_ A:88-103,105-110,152-164,165-177 1g1g d1g1ga_ A:88-103,105-110,152-164,165-177 1lar d1lara2 A:1690-1705,1707-1712,1750-1762,1763-1775 1wch d1wcha_ A:2286-2301,2303-2309,2349-2361,2362-2374 1g1h d1g1ha_ A:88-103,105-110,152-164,165-177 34. d.328.1 CorA soluble domain-like CorA soluble domain-like beta(2)-alpha-beta-alpha(2)-beta(4)-alpha(3); 3 layers: a/b/a; mixed beta-sheet, order 2137654; strands 3 and 7 are parallel 2bbh d2bbha1 A:46-56,59-66,122-133,134-141 2bbj d2bbjd1 D:46-56,59-66,122-133,134-141 2bbj d2bbja1 A:46-56,58-66,122-133,134-141 2bbj d2bbjf1 F:46-56,58-66,122-133,134-141 2bbj d2bbje1 E:46-56,58-66,121-133,134-141 2bbj d2bbjb1 B:46-56,58-66,121-133,134-141 2hn2 d2hn2b1 B:2046-2056,2058-2066,2119-2133,2134-2141 2hn2 d2hn2d1 D:4046-4056,4058-4066,4119-4133,4134-4141 2hn2 d2hn2e1 E:5046-5056,5058-5066,5119-5133,5134-5141 2hn2 d2hn2a1 A:1046-1056,1058-1066,1119-1133,1134-1141 2hn2 d2hn2c1 C:3046-3056,3058-3066,3119-3133,3134-3141 2iub d2iubf1 F:46-56,58-66,119-133,134-141 2iub d2iubb1 B:46-56,58-66,119-133,134-141 2iub d2iubc1 C:46-56,58-66,119-133,134-141 2iub d2iubh1 H:46-56,58-66,119-133,134-141 2iub d2iuba1 A:46-56,58-66,119-133,134-141 2iub d2iubg1 G:46-56,58-66,119-133,134-141 2iub d2iube1 E:46-56,58-66,119-133,134-141 2iub d2iubj1 J:46-56,58-66,119-133,134-141 2iub d2iubd1 D:46-56,58-66,119-133,134-141 2iub d2iubi1 I:46-56,58-66,119-133,134-141 35. e.67.1 PH0156-like PH0156-like 2 (sub)domains; d1: [alpha/beta with central mixed beta-sheet, order: 23415876, similarity to the G protein but no P-loop]; d2: [all-alpha, 5 helices, provides dimerization interface] 2p62 d2p62a1 A:67-85,89-97,122-127,128-136 2p62 d2p62b1 B:67-85,90-98,122-127,128-137 36. b.53.1 Ribosomal protein L25-like Ribosomal protein L25-like barrel, closed; n=6, S=10; complex topology 2qp1 d2qp1v1 V:13-24,25-32,73-80,85-94 2qoz d2qozv1 V:13-24,25-32,73-80,85-94 2i2v d2i2vv1 V:13-24,25-32,70-80,85-94 2i2t d2i2tv1 V:13-24,25-32,70-80,85-94 2qbi d2qbiv1 V:13-24,25-32,75-80,85-93 2qbk d2qbkv1 V:13-24,25-32,75-80,85-93 3df2 d3df2v1 V:13-24,25-32,73-80,85-94 3df4 d3df4v1 V:13-24,25-32,73-80,85-94 2qox d2qoxv1 V:13-24,25-32,73-80,85-94 2qov d2qovv1 V:13-24,25-32,73-80,85-94 2qbc d2qbcv1 V:13-24,25-32,75-80,85-93 2z4l d2z4lv1 V:13-24,25-32,75-80,85-94 2qba d2qbav1 V:13-24,25-32,75-80,85-93 2z4n d2z4nv1 V:13-24,25-32,75-80,85-94 1vs8 d1vs8v1 V:13-24,25-32,70-80,85-94 2qbg d2qbgv1 V:13-24,25-32,75-80,85-94 2qbe d2qbev1 V:13-24,25-32,75-80,85-94 2j28 d2j28v1 V:13-24,25-32,70-80,85-94 2awb d2awbv1 V:13-24,25-32,70-80,85-94 2gya d2gyat1 T:13-24,25-33,71-82,83-94 2vhm d2vhmv1 V:13-24,24-32,70-80,85-94 2vhn d2vhnv1 V:13-24,24-32,70-80,85-94 2gyc d2gyct1 T:13-24,25-33,71-81,84-94 1dfu d1dfup_ P:13-24,25-32,71-80,85-94 2qam d2qamv1 V:13-24,24-32,75-80,85-94 2qao d2qaov1 V:13-24,24-32,75-80,85-94 1vs6 d1vs6v1 V:13-24,24-32,70-80,85-94 3cf5 d3cf5s1 S:9-17,18-26,65-72,78-84 1d6k d1d6ka_ A:13-24,25-32,71-80,85-94 1qtq d1qtqa1 A:323-339,464-473,522-527,535-543 2zjp d2zjps1 S:9-17,18-25,65-71,79-84 2zjr d2zjrs1 S:9-17,18-26,65-71,79-84 2zjq d2zjqs1 S:9-17,18-26,65-71,79-85 2hgu d2hguy1 Y:10-22,22-31,72-76,84-91 2hgq d2hgqy1 Y:10-22,22-31,72-76,84-91 2hgj d2hgjy1 Y:11-22,22-31,72-76,84-91 3dll d3dlls1 S:9-17,19-24,65-71,79-84 39. c.70.1 Nucleoside hydrolase Nucleoside hydrolase core: 3 layers, a/b/a ; mixed beta-sheet of 8 strands, order 32145687; strand 7 is antiparallel to the rest 1kie d1kiea_ A:190-200,204-210,275-280,304-309 1kic d1kica_ A:190-200,204-210,275-280,304-309 1kie d1kieb_ B:190-200,204-210,275-280,304-309 1r4f d1r4fa_ A:190-200,204-210,275-280,304-309 1hp0 d1hp0a_ A:190-200,204-210,275-280,304-309 2ff1 d2ff1b1 B:190-200,204-210,275-280,304-309 2ff1 d2ff1a1 A:190-200,204-210,275-280,304-309 1r4f d1r4fb_ B:190-200,204-210,275-280,304-309 1kic d1kicb_ B:190-200,204-210,275-280,304-309 1mas d1masa_ A:172-183,185-191,254-260,288-296 1mas d1masb_ B:172-183,185-191,254-260,288-296 2mas d2masa_ A:172-183,185-191,254-260,288-296 2mas d2masb_ B:172-183,185-191,254-260,288-296 2mas d2masc_ C:172-183,185-191,254-260,288-296 2mas d2masd_ D:172-183,185-191,254-260,288-296 1q8f d1q8fd_ D:170-181,183-189,252-265,286-294 1q8f d1q8fa_ A:170-181,183-189,252-265,286-294 1q8f d1q8fb_ B:170-181,183-189,252-265,286-294 1q8f d1q8fc_ C:170-181,183-189,252-265,286-294 3b9x d3b9xd1 D:170-181,183-189,252-265,286-294 3b9x d3b9xc1 C:170-181,183-189,252-265,286-294 3b9x d3b9xb1 B:170-181,183-189,252-265,286-294 3b9x d3b9xa1 A:170-181,183-189,252-265,286-294 45. c.106.1 SurE-like some topological similarity to the N-terminal domain of Glutaminase/Asparaginase family ! SurE-like 3 layers: a/b/a; mixed beta-sheet of 9 strands, order 342156798; strands 3, 8 and 9 are antiparallel to the rest; left-handed crossover connection between strands 6 and 7 1j9j d1j9ja_ A:13-27,27-35,52-58,62-68 1j9k d1j9kb_ B:13-27,27-35,51-56,62-69 1ilv d1ilva_ A:13-27,27-35,52-56,62-68 1j9k d1j9ka_ A:13-27,27-35,51-56,62-69 1j9l d1j9la_ A:13-27,27-35,52-56,62-68 1j9l d1j9lb_ B:13-27,27-34,51-56,62-69 1j9j d1j9jb_ B:13-27,27-34,52-56,62-68 1ilv d1ilvb_ B:13-27,27-34,51-56,62-69 1l5x d1l5xb_ B:13-27,27-34,50-59,60-68 1l5x d1l5xa_ A:13-27,27-34,50-59,60-68 58. d.377.1 Rv2827c C-terminal domain-like Rv2827c C-terminal domain-like multihelical array flanked by two three-stranded mixed beta-sheets 1zel d1zelb2 B:240-251,258-262,272-277,278-283 1zel d1zela2 A:240-251,258-262,272-277,278-283 60. c.146.1 YgbK-like YgbK-like consists of two domains with partial topological similarity to the P-loop kinases but without the P-loop motif; the domain association results in the formation of a single mixed beta-sheet of 15 strands 1yzy d1yzyb1 B:322-345,347-353,379-385,389-395 1yzy d1yzya1 A:322-345,347-353,379-385,389-395 68. e.58.1 Viral ssDNA binding protein Viral ssDNA binding protein 2 domains; d1: [large alpha+beta domain subdivided into the 'head', 'neck' and 'shoulders' regions; in the 'neck', there is an OB-fold interrupted by large insertions]; d2: [all-alpha, 6 helices; orthogonal array] 1urj d1urjb_ B:354-378,912-923,975-988,1021-1031 1urj d1urja_ A:354-378,912-923,975-988,1021-1031