1. c.109.1 PEP carboxykinase N-terminal domain
PEP carboxykinase N-terminal domain contains mixed beta-sheets; topology is partly similar to that of the catalytic C-terminal domain
1khf d1khfa2 A:91-95,189-196,217-224,225-232
1khe d1khea2 A:91-95,189-196,217-224,225-232
2gmv d2gmva2 A:91-95,189-196,217-224,225-232
1khb d1khba2 A:91-95,189-196,217-224,225-232
1nhx d1nhxa2 A:91-95,189-196,217-224,225-232
2gmv d2gmvb2 B:91-95,189-196,217-224,225-232
1m51 d1m51a2 A:91-95,189-196,217-224,225-232
1khg d1khga2 A:91-95,189-196,217-224,225-232
2pc9 d2pc9d2 D:56-61,151-158,173-180,181-188
1j3b d1j3bb2 B:56-61,151-158,173-180,181-188
1xkv d1xkva2 A:56-61,151-158,173-180,181-188
1xkv d1xkvb2 B:56-61,151-158,173-180,181-188
1j3b d1j3ba2 A:56-61,151-158,173-180,181-188
2pc9 d2pc9c2 C:56-61,151-158,173-180,181-188
2pc9 d2pc9a2 A:56-61,151-158,173-180,181-188
2pc9 d2pc9b2 B:56-61,151-158,173-180,181-188
1ii2 d1ii2b2 B:47-52,140-147,162-169,170-177
1ii2 d1ii2a2 A:47-52,140-147,162-169,170-177
1oen d1oena2 A:69-73,166-173,189-196,197-204
2olq d2olqa2 A:69-73,166-173,189-196,197-204
2py7 d2py7x2 X:69-73,166-173,189-196,197-204
1aq2 d1aq2a2 A:69-73,166-173,189-196,197-204
2pxz d2pxzx2 X:69-73,166-173,189-196,197-204
2olr d2olra2 A:69-73,166-173,189-196,197-204
1ayl d1ayla2 A:69-73,166-173,189-196,197-204
1os1 d1os1a2 A:69-73,166-173,189-196,197-204
1k3c d1k3ca2 A:69-73,166-173,189-196,197-204
1k3d d1k3da2 A:69-73,166-173,189-196,197-204
2. e.26.1 Prismane protein-like
Prismane protein-like 3 domains: (1) spectrin repeat-like 3-helical bundle; (2 and 3) alpha/beta: Rossmann-fold topology
2z8y d2z8ym1 M:348-356,363-370,383-392,461-469
2z8y d2z8yp1 P:348-355,363-370,383-392,461-469
1mjg d1mjgm_ M:348-356,363-370,383-393,459-469
1mjg d1mjgn_ N:348-356,363-370,383-393,459-469
1oao d1oaod_ D:348-356,363-370,383-393,459-469
2z8y d2z8yn1 N:348-356,363-370,383-393,459-469
1mjg d1mjgp_ P:348-356,363-370,383-393,459-470
2z8y d2z8yo1 O:349-356,365-370,383-392,461-470
1mjg d1mjgo_ O:348-356,363-370,383-393,459-470
1oao d1oaoc_ C:348-356,363-370,383-392,458-469
1ru3 d1ru3a_ A:350-359,368-373,385-396,462-473
3. c.72.1 Ribokinase-like has extra strand located between strands 2 and 3 !
Ribokinase-like core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest ! potential superfamily: members of this fold have similar functions but different ATP-binding sites
2abs d2absa1 A:21-29,42-47,124-133,134-143
1dgm d1dgma_ A:21-29,42-47,124-133,134-143
1bx4 d1bx4a_ A:15-22,36-41,120-129,130-140
2ab8 d2ab8a1 A:21-29,42-47,124-133,134-143
1lii d1liia_ A:21-29,42-47,124-133,134-143
1lij d1lija_ A:21-29,42-47,124-133,134-143
2i6a d2i6ad1 D:15-23,36-41,120-129,130-140
2aa0 d2aa0a1 A:21-29,42-47,124-133,134-143
2a9z d2a9za1 A:21-29,42-47,124-133,134-143
2i6a d2i6aa1 A:15-23,36-41,120-129,130-140
2a9y d2a9ya1 A:21-29,42-47,124-133,134-143
2i6a d2i6ac1 C:15-23,36-41,120-129,130-140
2i6a d2i6ab1 B:15-23,36-41,120-129,130-140
1lio d1lioa_ A:22-28,43-47,125-133,134-141
1lik d1lika_ A:21-29,42-47,124-133,134-144
1ua4 d1ua4a_ A:31-39,86-92,174-184,193-203
1gc5 d1gc5a_ A:39-47,94-100,182-191,201-211
1l2l d1l2la_ A:34-42,88-95,177-187,196-206
1u2x d1u2xa_ A:36-44,91-98,180-189,204-214
1u2x d1u2xb_ B:36-44,91-98,180-190,203-214
4. d.112.1 Phoshotransferase/anion transport protein
Phoshotransferase/anion transport protein beta-alpha(2)-beta(3)-alpha(3); 3 layers, alpha/beta/alpha; mixed sheet: order 1342; loop crossing
1a3a d1a3aa_ A:11-15,60-65,77-84,99-106
1a3a d1a3ab_ B:11-15,60-65,77-84,99-106
1a3a d1a3ad_ D:11-15,60-65,76-84,99-107
1j6t d1j6ta_ A:11-15,60-65,76-84,99-107
1hyn d1hynq_ Q:117-122,225-235,239-247,261-271
1a3a d1a3ac_ C:11-15,60-65,76-84,99-107
1hyn d1hyns_ S:117-124,225-235,239-248,261-271
1a6j d1a6ja_ A:18-22,68-78,83-90,105-114
1hyn d1hynp_ P:117-124,225-235,239-248,261-271
1hyn d1hynr_ R:117-124,224-236,239-248,261-271
1xiz d1xizb_ B:10-16,61-67,75-85,102-110
1xiz d1xiza_ A:10-16,61-67,75-85,102-110
1a6j d1a6jb_ B:18-24,68-78,83-91,105-115
5. c.73.1 Carbamate kinase-like the sheet topology is similar to those of undecaprenyl diphosphate synthase and the N-terminal domain of phosphoglycerate kinase !
Carbamate kinase-like 3 layers: a/b/a; mixed (mainly parallel) beta-sheet of 8 strands, order 34215786; strand 8 is antiparallel to the rest
2ap9 d2ap9f1 F:209-216,232-236,266-273,290-295
2ap9 d2ap9b1 B:209-216,232-236,266-273,290-295
2j0w d2j0wa1 A:215-221,241-245,273-278,286-291
6. d.92.1 Metalloproteases ("zincins"), catalytic domain
Zincin-like contains mixed beta sheet with connection over free side of the sheet
1gxd d1gxda3 A:71-75,139-146,160-167,173-180
7. a.138.1 Multiheme cytochromes duplication: contains multiple CxxCH motifs !
Multiheme cytochromes variable number of helices and little beta structure; not a true fold
1sp3 d1sp3a_ A:245-252,309-313,328-340,386-398
8. b.81.1 Trimeric LpxA-like enzymes superhelical turns are made of three short strands; duplication: the sequence hexapeptide repeats correspond to individual strands !
Single-stranded left-handed beta-helix superhelix turns are made of parallel beta-strands and (short) turns
1tdt d1tdta_ A:198-205,213-218,229-240,245-256
1tdt d1tdtb_ B:198-205,213-218,229-240,245-256
1tdt d1tdtc_ C:198-205,213-218,229-240,245-256
1kgt d1kgta_ A:198-205,213-218,230-240,245-256
2tdt d2tdta_ A:198-205,213-218,230-240,245-256
1kgq d1kgqa_ A:198-205,213-218,230-240,245-256
3tdt d3tdta_ A:198-205,213-218,230-240,245-256
9. b.124.1 HesB-like domain
HesB-like domain barrel, closed; n=7, S=10; complex topology
2p2e d2p2ea1 A:3-8,23-32,65-71,72-78
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 45 (enumeration index: query192) of S4
2faf B:109-113,208-215,236-243,244-251
2faf A:109-113,208-215,236-243,244-251
3git C:348-356,363-370,383-392,461-469
3git E:348-356,363-370,383-392,461-469
3git A:348-356,363-370,383-392,461-469
3git D:348-356,363-370,383-392,461-469
3git B:348-356,363-370,383-392,461-469
3git F:348-356,363-370,383-392,461-469
2qf2 A:91-95,189-196,217-224,225-232
2qf2 B:91-95,189-196,217-224,225-232
3liu A:194-205,357-363,376-386,401-411
3liu B:194-205,359-363,376-386,401-411
3i01 O:349-356,363-370,383-393,459-470
3i01 N:348-356,365-370,383-392,461-469
3i01 M:348-356,363-370,383-392,461-469
3i01 P:348-356,363-370,383-392,461-469
2rka A:91-95,189-196,217-224,225-232
2rka C:91-95,189-196,217-224,225-232
1yvy B:1064-1069,1159-1166,1182-1189,1190-1197
1yvy A:64-69,159-166,182-189,190-197
3bvq A:253-262,285-289,297-305,316-325
3bvq B:253-262,285-289,297-304,317-325
3mof B:91-95,189-196,217-224,225-232
3mof A:91-95,189-196,217-224,225-232
2rk7 B:91-95,189-196,217-224,225-232
2rk7 A:91-95,189-196,217-224,225-232
3bxy A:198-205,213-218,229-240,245-256
2j4k D:133-139,159-163,197-203,220-225
3eg4 A:205-212,220-225,236-251,252-268
2rkd A:91-95,189-196,217-224,225-232
3drw B:14-22,69-76,158-168,181-192
3drw A:14-22,69-76,158-168,181-192
3njq B:4-17,35-45,111-118,130-139
3njq A:11-16,35-45,111-118,131-139
3qvh A:163-170,187-191,228-234,257-262
2xtb A:14-22,35-40,121-129,130-137
3lf6 B:18-24,69-75,83-93,110-118
3lf6 A:18-24,69-75,83-93,110-118
3d41 A:163-170,187-191,228-234,257-262
3fsy A:252-259,266-271,285-294,295-302
2few A:11-15,60-65,76-84,99-107
3otx A:14-22,35-40,120-129,130-140
3otx B:14-22,35-40,120-129,130-139
3qur A:163-170,187-191,228-234,257-262
3l86 A:173-179,192-196,228-234,239-244
3gos A:198-205,213-218,229-240,245-256
3gos B:198-205,213-218,229-240,244-256
3gos C:198-205,213-218,229-240,245-256
1ylh A:69-74,166-173,189-196,197-204
3tvi K:201-207,227-231,259-264,272-277
3dtb B:91-95,189-196,217-224,225-232
3dtb A:91-95,189-196,217-224,225-232
3loo A:15-23,36-41,119-128,129-139
3loo B:15-23,36-41,119-128,129-139
3loo C:15-23,36-41,119-128,129-139
2j4l I:133-139,159-163,197-203,220-225
2oq3 A:11-17,62-67,76-86,98-106
2fah B:109-114,208-215,236-243,244-251
2fah A:109-114,208-215,236-243,244-251
2fah C:109-114,208-215,236-243,244-251
2fah D:109-114,208-215,236-243,244-251
3p1v A:255-259,275-282,286-291,295-300
3qvf A:163-170,187-191,228-234,257-262
2jjx A:155-162,178-185,211-217,233-237
2jjx B:155-162,178-185,211-217,233-237
2jjx C:155-162,178-185,211-217,233-237
2qey A:91-95,189-196,217-224,225-232
3dt2 A:91-95,189-196,217-224,225-232
2oqt C:12-16,63-68,78-85,98-105
2oqt A:12-18,63-68,77-86,98-106
2oqt D:12-18,63-68,78-86,98-105
2oqt B:12-16,63-68,77-85,98-106
2qzy B:109-113,208-215,236-243,244-251
2qzy A:109-113,208-215,236-243,244-251
3moe A:91-95,189-196,217-224,225-232
2hkl C:291-299,342-350,379-385,460-466
1ytm B:1064-1069,1159-1166,1182-1189,1190-1197
1ytm A:64-69,159-166,182-189,190-197
3c25 B:253-262,284-289,297-306,315-325
3c25 A:253-262,285-289,297-306,315-325
3i04 N:348-356,363-370,383-392,461-469
3i04 P:348-356,363-370,383-392,461-469
3i04 O:348-356,363-370,383-393,459-470
3i04 M:348-356,363-370,383-392,461-469
2qf1 A:91-95,189-196,217-224,225-232
3fsx C:252-259,266-271,285-294,295-302
3fsx A:252-259,266-271,285-294,295-302
3fsx B:252-259,266-271,286-294,295-303
3bjv A:12-16,63-68,77-85,98-106
2i6b B:15-23,36-41,120-129,130-140
2i6b A:15-21,36-41,120-129,130-139
2rk8 B:91-95,189-196,217-224,225-232
2rk8 A:91-95,189-196,217-224,225-232
3tk8 A:237-244,252-257,268-279,284-295
3tk8 C:237-244,252-257,268-279,284-295
3tk8 B:237-244,252-257,268-279,284-295
3dt4 A:91-95,189-196,217-224,225-232
3dt4 C:91-95,189-196,217-224,225-232
2zci B:86-91,177-184,203-210,211-218
2zci C:86-91,177-184,203-210,211-218
2zci A:86-91,177-184,203-210,211-218
2zci D:86-91,177-184,203-210,211-218
2qew A:91-95,189-196,217-224,225-232
2rke A:91-95,189-196,217-224,225-232
3d40 A:163-170,187-191,228-234,257-262
2rij A:310-317,325-330,357-366,367-374
3quo A:163-170,187-191,228-234,257-262
3dt7 B:91-95,189-196,217-224,225-232
3dt7 A:91-95,189-196,217-224,225-232
3qun A:163-170,187-191,228-234,257-262
1ygg A:69-73,166-173,189-196,197-204
3ubo A:12-20,33-38,112-121,123-132
3ubo B:12-20,33-38,112-121,123-132
2a0j A:12-16,62-71,75-83,98-107
3oxp A:10-16,61-66,75-85,98-106
3oxp B:10-16,61-66,75-85,98-106
3moh A:91-95,189-196,217-224,225-232
3moh B:91-95,189-196,217-224,225-232