1. e.52.1 NAD kinase/diacylglycerol kinase-like NAD kinase/diacylglycerol kinase-like 2 domains: d1 [alpha/beta; related to the PFK N-terminal domain (scop_sf 53784)]; d2 [all-beta; atypical beta-sandwich made of 4 structural repeats of beta(3) unit] 1u0t d1u0ta_ A:159-166,189-195,200-207,267-275 1u0r d1u0rd_ D:159-166,189-195,200-207,267-275 1u0r d1u0ra_ A:159-166,189-195,200-207,267-275 1u0r d1u0rb_ B:159-166,189-195,200-207,267-275 1u0t d1u0tb_ B:159-166,189-195,200-207,267-275 1z0z d1z0za1 A:115-122,145-152,156-163,217-224 1z0z d1z0zd1 D:115-122,145-152,156-163,217-225 1z0z d1z0zc1 C:115-122,145-152,156-163,217-224 1z0u d1z0ub1 B:115-122,145-152,156-163,218-224 1z0s d1z0sb1 B:115-122,145-152,156-163,217-224 1z0s d1z0sc1 C:115-122,145-152,156-163,217-224 1z0u d1z0ua1 A:115-122,145-152,156-163,218-224 1suw d1suwc_ C:115-122,145-152,156-163,217-224 1suw d1suwa_ A:115-122,145-152,156-163,217-224 1suw d1suwb_ B:115-122,145-152,156-163,217-224 1suw d1suwd_ D:115-122,145-152,156-163,217-224 1z0s d1z0sa1 A:115-122,145-152,156-163,218-224 1z0s d1z0sd1 D:115-122,145-152,156-163,218-224 2. d.157.1 Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase duplication of beta(4)-alpha-beta-alpha motif; 4 layers a/b/b/a; mixed beta-sheets 2qed d2qeda1 A:11-20,22-28,31-43,121-126 2q42 d2q42a1 A:11-20,23-29,32-44,124-130 1bmc d1bmca_ A:40-49,50-56,60-76,137-144 2znb d2znba_ A:52-62,63-69,73-89,150-157 1qh3 d1qh3a_ A:11-21,22-29,32-44,127-133 4znb d4znbb_ B:51-62,63-69,73-89,150-157 2bib d2biba2 A:18-26,27-36,61-74,158-165 2bc2 d2bc2b_ B:39-49,50-56,60-76,137-144 1bc2 d1bc2b_ B:39-49,50-56,60-76,137-144 1qh5 d1qh5a_ A:11-21,22-29,32-44,127-133 3bc2 d3bc2a_ A:39-49,50-56,60-76,137-144 1wra d1wraa1 A:43-51,52-61,86-99,183-190 1qh5 d1qh5b_ B:11-21,22-29,32-44,128-133 1dxk d1dxka_ A:38-49,50-56,60-76,137-144 3znb d3znba_ A:50-62,63-69,73-89,150-157 1bc2 d1bc2a_ A:39-49,50-56,60-76,137-144 3znb d3znbb_ B:50-62,63-69,73-89,150-157 1a8t d1a8tb_ B:33-45,46-52,56-72,133-140 2znb d2znbb_ B:50-62,63-69,73-89,150-157 2bc2 d2bc2a_ A:38-49,50-56,60-76,137-144 1y44 d1y44b1 B:19-27,31-39,65-83,226-232 1a8t d1a8ta_ A:33-45,46-52,56-72,133-140 4znb d4znba_ A:50-62,63-69,73-89,150-157 1xm8 d1xm8b_ B:11-21,22-29,32-44,124-130 1xm8 d1xm8a_ A:11-21,22-29,32-44,124-130 1wra d1wrab1 B:43-51,53-61,86-99,183-190 1znb d1znbb_ B:50-62,63-69,73-89,150-157 1znb d1znba_ A:50-62,63-69,73-89,150-157 1qh3 d1qh3b_ B:11-21,22-29,32-44,99-110 1a7t d1a7tb_ B:33-45,46-52,56-72,133-140 2qds d2qdsa1 A:67-77,78-84,88-105,186-191 1a7t d1a7ta_ A:33-45,46-52,56-72,133-140 1x8i d1x8ia_ A:67-77,78-84,88-105,186-191 2gkl d2gkla1 A:67-77,78-84,88-105,186-191 1x8h d1x8ha_ A:67-77,78-84,88-105,186-191 1hlk d1hlkb_ B:50-62,63-69,73-89,150-157 1qh3 d1qh3a_ A:11-21,22-29,32-44,99-110 1hlk d1hlka_ A:50-62,63-69,73-89,150-157 1qh5 d1qh5b_ B:11-21,22-29,32-44,99-110 1x8g d1x8ga_ A:67-77,78-84,88-105,186-191 1kr3 d1kr3a_ A:50-62,63-69,73-89,150-157 1kr3 d1kr3b_ B:50-62,63-69,73-89,150-157 1ww1 d1ww1a1 A:11-19,20-28,50-69,203-209 1qh5 d1qh5a_ A:11-21,22-29,32-44,99-110 2h6a d2h6ab1 B:68-77,78-84,87-103,184-195 2e7y d2e7ya1 A:11-19,20-28,50-69,203-209 1ww1 d1ww1b1 B:11-19,20-28,50-69,203-209 2qed d2qeda1 A:11-20,22-28,55-70,159-164 2fu6 d2fu6b1 B:68-77,78-84,87-103,184-195 2fu7 d2fu7a1 A:68-77,78-84,87-103,184-195 2fu8 d2fu8b1 B:68-77,78-84,87-103,184-195 2qdt d2qdta1 A:37-46,47-53,56-71,149-159 1jt1 d1jt1a_ A:67-76,78-84,87-103,184-195 1sml d1smla_ A:37-46,47-53,56-71,149-159 1l9y d1l9yb_ B:67-76,78-84,87-103,184-195 2fu9 d2fu9b1 B:68-77,78-84,87-103,184-195 2fm6 d2fm6a1 A:68-77,78-84,87-103,184-195 1k07 d1k07b_ B:67-76,78-84,87-103,184-195 1k07 d1k07a_ A:67-76,78-84,87-103,184-195 2hb9 d2hb9a1 A:68-77,78-84,87-103,184-195 1l9y d1l9ya_ A:67-76,78-84,87-103,184-195 2qed d2qeda1 A:11-20,22-28,31-43,99-109 2fm6 d2fm6b1 B:68-77,78-84,87-103,184-195 2gfk d2gfkb1 B:68-77,78-84,87-103,184-195 2fu7 d2fu7b1 B:68-77,78-84,87-103,184-195 2aio d2aioa1 A:67-76,78-84,87-103,184-195 2gfj d2gfjb1 B:68-77,78-84,87-103,184-195 2h6a d2h6aa1 A:68-77,78-84,87-103,184-195 2dkf d2dkfa1 A:13-21,24-34,61-75,181-187 1ycf d1ycfa2 A:34-44,46-51,54-70,136-146 2fu6 d2fu6a1 A:68-77,78-84,87-103,184-195 2fu8 d2fu8a1 A:68-77,78-84,87-103,184-195 1mqo d1mqoa_ A:63-77,78-84,88-105,184-191 2doo d2doob1 B:29-41,42-48,52-67,129-134 2gmn d2gmnb1 B:54-63,64-70,73-88,166-176 2fu9 d2fu9a1 A:68-77,78-84,87-103,184-195 1ycg d1ycgb2 B:34-44,46-51,57-70,136-146 2gmn d2gmna1 A:54-63,64-70,73-88,166-176 1ycf d1ycfb2 B:34-44,46-51,57-70,136-146 2gfj d2gfja1 A:68-77,78-84,87-103,184-195 1jje d1jjea_ A:29-41,42-48,52-67,129-134 2gfk d2gfka1 A:68-77,78-84,87-103,184-195 1dd6 d1dd6b_ B:29-41,42-48,52-67,129-134 1vgn d1vgna1 A:29-41,42-48,52-67,129-134 1ycg d1ycgd2 D:33-44,46-51,57-70,136-146 1ych d1ychc2 C:33-44,46-51,57-70,136-146 1ycg d1ycgc2 C:33-44,46-51,57-70,136-146 1ych d1ychd2 D:33-44,46-51,57-70,136-146 2doo d2dooa1 A:29-41,42-48,52-67,129-134 1ych d1ychb2 B:33-44,46-51,57-70,136-146 1ych d1ycha2 A:33-44,46-51,57-70,136-146 2e7y d2e7ya1 A:11-19,20-28,34-41,203-209 1bvt d1bvta_ A:36-49,50-56,60-76,137-144 1dd6 d1dd6a_ A:29-41,42-48,52-67,129-134 1jje d1jjeb_ B:29-41,42-48,52-67,129-134 1y44 d1y44a1 A:19-27,31-37,65-83,226-231 1jjt d1jjtb_ B:29-41,42-48,52-67,129-134 2cg3 d2cg3a2 A:105-111,113-119,142-158,338-342 1ddk d1ddka_ A:29-41,42-48,52-67,129-134 1vgn d1vgnb1 B:29-41,42-48,52-67,129-134 1jjt d1jjta_ A:29-41,42-48,52-67,129-134 2cg3 d2cg3a2 A:124-131,132-138,142-158,268-276 1m2x d1m2xd_ D:63-77,78-84,88-105,184-191 1m2x d1m2xa_ A:63-77,78-84,88-105,184-191 1m2x d1m2xc_ C:63-77,78-84,88-105,184-191 1m2x d1m2xb_ B:63-77,78-84,88-105,184-191 2cg2 d2cg2a2 A:124-131,132-138,142-158,268-278 2cfu d2cfua2 A:124-131,132-138,142-158,268-278 2p97 d2p97b1 B:20-31,32-38,67-78,174-179 2h6a d2h6aa1 A:68-77,78-84,122-133,257-261 1sml d1smla_ A:37-46,47-53,90-101,219-223 2fu7 d2fu7b1 B:68-77,78-84,122-133,257-261 2h6a d2h6ab1 B:68-77,78-84,122-133,257-261 2fu6 d2fu6a1 A:68-77,78-84,122-133,257-261 2fm6 d2fm6b1 B:68-77,78-84,122-133,257-261 2p97 d2p97a1 A:19-31,32-38,67-78,174-179 2fu9 d2fu9b1 B:68-77,78-84,122-133,257-261 2hb9 d2hb9a1 A:68-77,78-84,122-133,257-261 2fu8 d2fu8a1 A:68-77,78-84,122-133,257-261 2fu8 d2fu8b1 B:68-77,78-84,122-133,257-261 2cfz d2cfza2 A:124-131,132-138,142-158,268-278 2qdt d2qdta1 A:37-46,47-53,90-101,219-223 2gfk d2gfka1 A:68-77,78-84,122-133,257-261 2aio d2aioa1 A:67-76,78-84,122-133,257-261 2fm6 d2fm6a1 A:68-77,78-84,122-133,257-261 2fu7 d2fu7a1 A:68-77,78-84,122-133,257-261 2gfj d2gfja1 A:68-77,78-84,122-133,257-261 2gfj d2gfjb1 B:68-77,78-84,122-133,257-261 2q0i d2q0ia1 A:23-30,32-38,41-57,148-157 1ztc d1ztcb1 B:17-31,32-38,74-82,155-161 2q0j d2q0ja1 A:23-30,32-38,41-57,149-157 1ztc d1ztcd1 D:17-31,32-38,71-82,155-161 1ztc d1ztca1 A:17-31,32-38,71-82,155-161 1ztc d1ztcc1 C:17-31,32-38,71-82,155-161 1vme d1vmea2 A:36-48,49-55,90-102,222-227 1vme d1vmeb2 B:36-48,49-55,90-102,222-227 1ww1 d1ww1b1 B:11-19,20-28,27-35,178-189 1ww1 d1ww1a1 A:11-19,20-28,27-35,178-189 2yz3 d2yz3b1 B:44-57,58-64,68-84,149-156 2e7y d2e7yb1 B:12-19,20-28,34-41,177-189 1ko2 d1ko2a_ A:63-77,78-84,88-105,186-193 1ko3 d1ko3a_ A:63-77,78-84,88-105,186-193 2yz3 d2yz3a1 A:44-57,58-64,68-84,149-156 2e7y d2e7ya1 A:11-19,20-28,34-41,177-189 10. b.9.1 Neurophysin II duplication: composed of two structural repeats ! Neurophysin II sandwich; 8 strands in 2 sheets; meander 1jk6 d1jk6c_ C:18-23,25-30,38-51,64-68 2bn2 d2bn2e_ E:18-23,25-30,38-50,64-69 1npo d1npoa_ A:18-23,25-30,38-51,64-68 1jk4 d1jk4a_ A:18-23,25-30,38-51,64-68 1l5d d1l5da_ A:18-22,25-30,38-51,65-69 2bn2 d2bn2c_ C:18-23,25-30,38-51,64-68 2bn2 d2bn2a_ A:18-23,25-30,38-51,64-68 1npo d1npoc_ C:18-23,25-30,38-51,64-68 2bn2 d2bn2g_ G:18-23,25-30,38-50,64-68 14. e.69.1 Poly(A) polymerase catalytic subunit-like Central domain d2 is distantly related to the nucleotidyltransferase superfamily (scop_sf 81301) Poly(A) polymerase catalytic subunit-like 3 domains; d1: all-alpha, contains HhH motif; d2: alpha+beta of nucleotidyltransferase fold (scop_cf 81302); d3: [alpha+beta; beta(3)-alpha-beta(3)-alpha(2); 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 123654, strands 2 and 5 are antiparallel to the rest 2gaf d2gafd1 D:341-348,355-361,362-374,455-460 2ga9 d2ga9d1 D:341-348,355-361,362-374,455-460