1. c.82.1 ALDH-like binds NAD differently from other NAD(P)-dependent oxidoreductases !
ALDH-like consists of two similar domains with 3 layers (a/b/a) each; duplication ! core: parallel beta-sheet of 5 strands, order 32145
1wnd d1wndd_ D:290-307,324-342,348-353,362-367
1wnd d1wndb_ B:290-307,324-342,348-353,362-367
1wnb d1wnbd_ D:290-307,324-342,348-353,362-367
2. c.1.8 (Trans)glycosidases
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1wza d1wzaa2 A:281-295,341-355,357-363,447-456
2guy d2guya2 A:251-265,307-321,322-329,392-401
1mvy d1mvya2 A:350-364,461-479,480-486,565-572
1jgi d1jgia2 A:350-364,461-479,480-486,565-572
1mw2 d1mw2a2 A:350-364,461-479,480-486,565-572
1zs2 d1zs2a2 A:350-364,461-479,480-486,565-572
1mw3 d1mw3a2 A:350-364,461-479,480-486,565-572
1mw0 d1mw0a2 A:350-364,461-479,480-486,565-572
1jg9 d1jg9a2 A:350-364,461-479,480-486,565-572
1mw1 d1mw1a2 A:350-364,461-479,480-486,565-572
1s46 d1s46a2 A:350-364,461-479,480-486,565-572
1g5a d1g5aa2 A:350-364,461-479,480-486,565-572
2fhf d2fhfa5 A:733-742,851-869,871-877,986-994
2fhc d2fhca5 A:733-742,851-869,871-877,986-994
2fhb d2fhba5 A:733-742,851-869,871-877,986-994
3. e.1.1 Serpins
Serpins contains a cluster of helices and a beta-sandwich
1ova d1ovad_ D:53-68,94-106,109A-122,379-389
1uhg d1uhgb_ B:30-45,81-93,96-109,373-383
1uhg d1uhgd_ D:30-45,80-93,96-109,373-383
1uhg d1uhgc_ C:30-45,80-92,96-109,373-383
1uhg d1uhga_ A:30-45,80-93,96-109,373-383
1ova d1ovac_ C:53-68,93-105,109A-121,379-389
1ova d1ovab_ B:53-68,93-105,109A-122,379-389
1ova d1ovaa_ A:53-68,93-105,109A-122,379-389
1sr5 d1sr5a_ A:79-94,118-138,138-150,417-427
1jrr d1jrra_ A:31-46,102-116,121-133,403-413
1azx d1azxi_ I:79-94,118-138,138-150,417-427
2gd4 d2gd4c1 C:79-94,118-139,138-150,417-427
1e03 d1e03i_ I:79-94,118-138,137-150,417-427
2gd4 d2gd4i1 I:79-94,118-139,138-150,417-427
1tb6 d1tb6i_ I:79-94,118-138,138-150,417-427
1xqg d1xqga_ A:31-47,65-85,85-96,363-373
1xqj d1xqja_ A:31-47,65-85,85-96,363-373
1jmo d1jmoa_ A:135-150,175-194,197-208,465-475
1lk6 d1lk6i_ I:79-94,115-132,138-150,417-427
1xqg d1xqgb_ B:31-47,65-85,85-96,363-373
1b3k d1b3kb_ B:35-50,68-84,90-100,367-377
1b3k d1b3kc_ C:35-50,68-84,90-100,367-377
1b3k d1b3kd_ D:35-50,68-84,90-100,367-377
1b3k d1b3ka_ A:35-50,68-84,90-100,367-377
1jti d1jtib_ B:30-45,78-91,96-109,373-383
1jti d1jtia_ A:30-45,78-92,96-109,373-383
1nq9 d1nq9l_ L:79-94,118-132,138-150,417-427
1nq9 d1nq9i_ I:79-94,118-133,138-150,417-427
1imv d1imva_ A:61-76,97-111,115-126,383-393
1sng d1snga_ A:35-50,65-78,82-93,350-359
1oc0 d1oc0a_ A:35-50,68-84,90-101,367-377
1jmj d1jmja_ A:135-150,175-192,197-208,465-475
2znh d2znha1 A:79-94,116-132,138-150,417-427
1br8 d1br8i_ I:79-94,115-132,138-150,417-427
1dvm d1dvmd_ D:35-50,68-84,90-101,367-377
1r1l d1r1li_ I:79-94,115-132,138-150,417-427
1dvm d1dvma_ A:35-50,68-84,90-101,367-377
1jmj d1jmjb_ B:135-150,175-192,197-208,465-475
1e05 d1e05i_ I:79-94,117-132,138-150,417-427
2beh d2behi1 I:79-94,115-134,139-150,417-427
2znh d2znhb1 B:79-94,115-132,138-150,417-427
1e03 d1e03l_ L:79-94,118-133,138-150,417-427
1jvq d1jvqi_ I:79-94,115-132,138-150,417-427
3evj d3evjl1 L:79-94,118-132,138-150,417-427
1att d1atta_ A:80-95,116-133,139-151,418-428
1oo8 d1oo8a_ A:53-68,88-105,112-122,379-389
1azx d1azxl_ L:79-94,118-133,138-150,417-427
2hij d2hijl1 L:79-94,115-133,138-150,417-427
1dvm d1dvmb_ B:35-50,68-84,90-101,367-377
1by7 d1by7a_ A:31-46,99-115,122-133,403-413
1db2 d1db2b_ B:35-50,68-84,90-101,367-377
1dzg d1dzgi_ I:79-94,115-132,138-150,417-427
1db2 d1db2a_ A:35-50,68-84,90-101,367-377
2beh d2behl1 L:79-94,115-133,138-150,417-427
1oph d1opha_ A:53-69,88-105,111-122,379-389
1lk6 d1lk6l_ L:79-94,115-133,138-150,417-427
1dvm d1dvmc_ C:35-50,68-84,90-101,367-377
2b4x d2b4xl1 L:79-94,115-133,138-150,417-427
1dzh d1dzhl_ L:79-94,116-133,138-150,417-427
1jvq d1jvql_ L:79-94,115-133,138-150,417-427
1br8 d1br8l_ L:79-94,115-133,138-150,417-427
2hij d2hiji1 I:79-94,115-132,138-150,417-427
1ant d1anti_ I:79-94,116-131,138-150,417-427
1dzg d1dzgl_ L:79-94,115-133,138-150,417-427
2ant d2anti_ I:79-94,115-132,138-150,417-427
1r1l d1r1ll_ L:79-94,115-133,138-150,417-427
1e04 d1e04i_ I:79-94,115-132,138-150,417-427
1t1f d1t1fb1 B:79-94,118-133,137-150,417-427
1t1f d1t1fa1 A:79-94,118-133,137-150,417-427
1t1f d1t1fc1 C:79-94,118-133,137-150,417-427
1att d1attb_ B:80-95,116-133,139-151,418-428
2b5t d2b5ti1 I:79-94,118-134,137-150,417-427
1psi d1psia_ A:53-68,88-106,111-122,379-389
1ant d1antl_ L:79-94,116-133,138-150,417-427
1dzh d1dzhi_ I:79-94,115-133,138-150,417-427
2ant d2antl_ L:79-94,115-133,138-150,417-427
1ath d1atha_ A:79-94,115-132,138-149,417-427
1oyh d1oyhi_ I:79-94,115-134,140-150,417-427
1e04 d1e04l_ L:79-94,115-133,137-150,417-427
1e05 d1e05l_ L:79-94,116-134,137-150,417-427
1a7c d1a7ca_ A:35-51,68-84,89-100,367-377
1qlp d1qlpa_ A:53-69,88-105,111-122,379-389
1atu d1atua_ A:53-69,88-105,112-122,379-389
1hp7 d1hp7a_ A:53-69,88-106,110-122,379-389
4. d.31.1 Cdc48 domain 2-like
Cdc48 domain 2-like beta-alpha-beta(3); 2 layers: alpha/beta
1cz5 d1cz5a2 A:70-78,115-125,126-130,132-136
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 214 (enumeration index: query217) of S4
2r9y A:82-97,116-129,132-143,397-407
2ya1 A:838-847,913-934,936-942,1062-1071
2ceo B:49-64,84-101,106-118,380-390
2ceo A:49-64,84-101,106-118,380-390
3prl D:303-321,336-354,359-365,370-375
3dru B:53-69,88-105,110-121,379-389
3dru C:53-69,88-105,111-121,379-389
3dru A:53-68,88-105,111-121,379-389
3czg A:349-363,463-484,485-492,572-579
3j09 B:27-42,66-78,79-83,267-272
3j09 A:27-42,66-78,79-83,267-272
1xu8 B:31-47,65-85,85-96,363-373
1xu8 A:31-47,65-85,85-96,363-373
3lv1 A:259-278,288-302,308-315,321-326
3lv1 D:259-278,288-302,308-315,321-326
3k8k A:451-465,509-524,525-531,625-634
3k8k B:451-465,509-524,525-531,625-634
3q02 A:35-50,68-84,90-101,367-377
3q02 B:35-50,68-84,90-101,367-377
3ifg H:301-318,335-353,358-363,372-377
3ifg A:303-319,335-353,358-363,372-377
3ifg O:301-319,335-353,358-363,372-377
3ifg J:301-318,335-353,358-363,372-377
3ifg K:301-319,335-353,358-363,372-377
3ifg N:301-319,335-353,358-363,372-377
3ifg B:301-319,335-353,358-363,372-377
3ifg I:301-319,335-353,358-363,372-377
3ifg G:301-318,335-353,358-363,372-377
2vdy B:44-60,79-96,100-113,370-380
2vdy A:44-59,79-96,100-112,370-380
3k8l A:451-465,509-524,525-531,625-634
3ifh V:301-319,335-353,358-363,372-377
3ifh T:301-319,335-353,358-363,372-377
3ifh 4:301-319,335-353,358-363,372-377
3ifh Q:301-319,335-353,358-363,372-377
3ifh W:301-319,335-353,358-363,372-377
3ifh S:301-319,335-353,358-363,372-377
3ifh 5:301-319,335-353,358-363,372-377
2y26 N:74-84,85-93,127-138,212-217
2y26 F:74-84,85-93,127-138,212-217
2y26 Q:74-84,85-93,127-138,212-217
2y26 L:74-84,85-93,127-138,212-217
2y26 M:74-84,85-93,127-138,212-217
2y26 E:74-84,85-93,127-138,212-217
2y26 H:74-84,85-93,127-138,212-217
2y26 R:74-84,85-93,127-138,212-217
2y26 B:74-84,85-93,127-138,212-217
2y26 I:74-84,85-93,127-138,212-217
2y26 J:74-84,85-93,127-138,212-217
2y26 O:74-84,85-93,127-138,212-217
2y26 G:74-84,85-93,127-138,212-217
2y26 C:74-84,85-93,127-138,212-217
2y26 T:74-84,85-93,127-138,212-217
2y26 K:74-84,85-93,127-138,212-217
2y26 P:74-84,85-93,127-138,212-217
2y26 D:74-84,85-93,127-138,212-217
2y26 S:74-84,85-93,127-138,212-217
2y26 A:74-84,85-93,127-138,212-217
3cze A:349-363,463-484,486-492,572-579
2wy0 C:101-116,142-159,169-180,437-448
2qug A:53-69,88-105,111-122,379-389
3pb1 I:35-50,68-84,90-101,367-377
3h5c A:80-96,115-135,137-148,408-418
2yi4 L:74-84,85-93,127-138,212-217
2yi4 I:74-84,85-93,127-138,212-217
2yi4 T:74-84,85-93,127-138,212-217
2yi4 O:74-84,85-93,127-138,212-217
2yi4 B:74-84,85-93,127-138,212-217
2yi4 H:74-84,85-93,127-138,212-217
2yi4 E:74-84,85-93,127-138,212-217
2yi4 P:74-84,85-93,127-138,212-217
2yi4 Q:74-84,85-93,127-138,212-217
2yi4 A:74-84,85-93,127-138,212-217
2yi4 F:74-84,85-93,127-138,212-217
2yi4 M:74-81,85-93,127-138,212-217
2yi4 D:74-84,85-93,127-138,212-217
2yi4 R:74-84,85-93,127-138,212-217
2yi4 C:74-84,85-93,127-138,212-217
2yi4 S:74-84,85-93,127-138,212-217
2yi4 G:74-81,85-93,127-138,212-217
2yi4 N:74-84,85-93,127-138,212-217
2yi4 K:74-84,85-93,127-138,212-217
2yi4 J:74-84,85-93,127-138,212-217
2dut C:31-46,94-108,112-124,396-406
2dut B:31-46,94-108,112-124,396-406
2dut D:31-46,94-108,112-124,396-406
2dut A:31-46,94-108,112-124,396-406
2fh6 A:733-742,851-869,871-877,986-994
2y5e A:540-549,659-677,679-685,795-803
3czl A:349-363,463-484,485-492,572-579
3cwl A:53-69,88-105,111-122,379-389
3nda B:33-48,68-86,90-102,365-375
3nda A:33-48,68-86,90-102,365-375
2zv6 B:30-45,81-94,100-111,378-388
2zv6 A:30-45,80-95,98-111,378-388
2zv6 C:30-46,81-94,98-111,378-388
1yxa A:74-89,109-127,130-143,405-415
2y7u D:74-84,85-93,127-138,212-217
2y7u M:74-84,85-93,127-138,212-217
2y7u H:74-84,85-93,127-138,212-217
2y7u O:74-84,85-93,127-138,212-217
2y7u B:74-84,85-93,127-138,212-217
2y7u J:74-84,85-93,127-139,212-217
2y7u P:74-81,85-93,127-138,212-217
2y7u F:74-84,85-93,127-138,212-217
2y7u R:74-84,85-93,127-139,212-217
2y7u I:74-84,85-93,127-138,212-217
2y7u T:74-84,85-93,127-138,212-217
2y7u Q:74-84,85-93,127-139,212-217
2y7u G:74-84,85-93,127-138,212-217
2y7u K:74-84,85-93,127-138,212-217
2y7u N:74-84,85-93,127-138,212-217
2y7u L:74-84,85-93,127-138,212-217
2y7u S:74-84,85-93,127-138,212-217
2y7u E:74-84,85-93,127-138,212-217
2y7u A:74-84,85-93,127-138,212-217
2y7u C:74-84,85-93,127-138,212-217
3k8m A:451-465,509-524,525-531,625-634
2wxw A:102-117,143-160,169-181,436-446
3kds F:390-404,413-435,445-449,453-460
3kds E:390-404,413-435,445-449,453-460
3sfz A:107-118,191-208,237-245,424-430
3f5n E:49-63,86-99,105-116,385-395
3f5n C:49-65,86-100,105-116,385-395
3f5n A:49-64,84-99,105-116,385-395
3f5n D:49-65,86-100,105-116,385-395
3kcg I:79-94,118-138,138-150,417-427
2wxy C:101-116,142-159,168-180,437-448
3k2w G:299-316,333-351,356-361,374-379
3k2w F:299-316,333-351,356-361,374-379
3k2w C:299-316,333-351,356-361,374-379
3k2w D:299-316,333-351,356-361,374-379
2fgz A:733-742,851-869,871-877,986-994
3cvm B:35-51,68-84,89-101,367-377
3cvm A:35-50,68-84,89-101,367-377
1wz9 B:31-47,65-85,85-96,363-373
1wz9 A:31-47,65-85,85-96,363-373
3le2 A:34-50,65-82,90-102,377-387
2yi3 O:74-84,85-93,127-138,212-217
2yi3 L:74-84,85-93,127-138,212-217
2yi3 F:74-84,85-93,127-138,212-217
2yi3 M:74-84,85-93,127-138,212-217
2yi3 G:74-84,85-93,127-138,212-217
2yi3 B:74-84,85-93,127-138,212-217
2yi3 K:74-84,85-93,127-138,212-217
2yi3 I:74-84,85-93,127-138,212-217
2yi3 Q:74-84,85-93,127-139,212-217
2yi3 T:74-84,85-93,127-138,212-217
2yi3 H:74-84,85-93,127-138,212-217
2yi3 S:74-84,85-93,127-138,212-217
2yi3 J:74-84,85-93,127-139,212-217
2yi3 D:74-84,85-93,127-138,212-217
2yi3 P:74-81,85-93,127-138,212-217
2yi3 N:74-84,85-93,127-138,212-217
2yi3 A:74-84,85-93,127-138,212-217
2yi3 E:74-84,85-93,127-138,212-217
2yi3 R:74-84,85-93,127-139,212-217
2yi3 C:74-84,85-93,127-138,212-217
3fax A:862-871,938-956,958-964,1080-1089
3drm A:53-69,88-105,111-122,379-389
2wy1 A:101-116,142-159,168-180,437-448
2wy1 B:101-116,142-159,168-180,437-448
2y4s A:540-549,659-677,679-685,795-803
2y7v K:74-84,85-93,127-138,212-217
2y7v B:74-84,85-93,127-138,212-217
2y7v S:74-84,85-93,127-138,212-217
2y7v H:74-84,85-93,127-138,212-217
2y7v N:74-84,85-93,127-138,212-217
2y7v E:74-84,85-93,127-138,212-217
2y7v L:74-84,85-93,127-138,212-217
2y7v A:74-84,85-93,127-138,212-217
2y7v I:74-84,85-93,127-138,212-217
2y7v R:74-81,85-93,127-138,212-217
2y7v F:74-84,85-93,127-138,212-217
2y7v D:74-84,85-93,127-138,212-217
2y7v Q:74-84,85-93,127-138,212-217
2y7v C:74-84,85-93,127-138,212-217
2y7v G:74-81,85-93,127-138,212-217
2y7v P:74-84,85-93,127-138,212-217
2y7v M:74-81,85-93,127-138,212-217
2y7v O:74-84,85-93,127-138,212-217
2y7v T:74-84,85-93,127-138,212-217
2y7v J:74-84,85-93,127-138,212-217
3m07 A:321-334,409-423,425-431,533-542
2yi2 I:74-84,85-93,127-138,212-217
2yi2 E:74-84,85-93,127-138,212-217
2yi2 T:74-84,85-93,127-138,212-217
2yi2 H:74-84,85-93,127-139,212-217
2yi2 B:74-84,85-93,127-138,212-217
2yi2 N:74-84,85-93,127-138,212-217
2yi2 P:74-84,85-93,127-138,212-217
2yi2 J:74-84,85-93,127-138,212-217
2yi2 Q:74-84,85-93,127-139,212-217
2yi2 L:74-84,85-93,127-138,212-217
2yi2 A:74-84,85-93,127-138,212-217
2yi2 F:74-84,85-93,127-138,212-217
2yi2 M:74-84,85-93,127-138,212-217
2yi2 C:74-84,85-93,127-138,212-217
2yi2 D:74-84,85-93,127-138,212-217
2yi2 G:74-84,85-93,127-138,212-217
2yi2 O:74-84,85-93,127-138,212-217
2yi2 S:74-81,85-93,127-138,212-217
2yi2 K:74-84,85-93,127-138,212-217
2yi2 R:74-84,85-93,127-138,212-217
2x0b H:102-117,140-160,169-181,436-446
2x0b B:102-117,140-160,169-181,436-446
2x0b D:102-117,140-160,169-181,436-446
2x0b F:102-117,140-160,169-181,436-446
2wpg A:350-364,464-485,486-493,573-580
3czk A:349-363,463-484,485-492,572-579
2oay A:148-163,181-193,195-205,464-475
3r4l A:58-73,93-107,113-124,390-400
2arr A:31-46,102-116,121-133,403-413
3hje A:268-280,542-575,576-582,651-658
2w8r A:350-368,385-403,408-413,422-427
3f1s A:80-95,116-135,137-149,408-418
2fh8 A:733-742,851-869,871-877,986-994
3q03 B:35-50,68-84,89-101,367-377
3q03 A:35-51,68-84,91-101,367-377
2arq A:31-46,102-116,121-133,403-413
2vdx B:44-60,79-94,101-113,370-380
2vdx A:44-59,79-96,100-112,370-380
2v95 A:39-54,71-93,92-104,361-371
2y7t I:74-84,85-93,127-138,212-217
2y7t B:74-84,85-93,127-138,212-217
2y7t L:74-84,85-93,127-138,212-217
2y7t G:74-84,85-93,127-138,212-217
2y7t T:74-84,85-93,127-138,212-217
2y7t E:74-84,85-93,127-138,212-217
2y7t P:74-84,85-93,127-138,212-217
2y7t A:74-84,85-93,127-138,212-217
2y7t S:74-81,85-93,127-138,212-217
2y7t F:74-84,85-93,127-138,212-217
2y7t R:74-84,85-93,127-138,212-217
2y7t O:74-84,85-93,127-138,212-217
2y7t D:74-84,85-93,127-138,212-217
2y7t K:74-84,85-93,127-138,212-217
2y7t M:74-84,85-93,127-138,212-217
2y7t C:74-84,85-93,127-138,212-217
2y7t J:74-84,85-93,127-138,212-217
2y7t N:74-84,85-93,127-138,212-217
2y7t H:74-84,85-93,127-139,212-217
2y7t Q:74-84,85-93,127-139,212-217
3fgq A:49-65,84-99,103-116,385-395
3fgq B:49-65,84-99,103-116,385-395
3k6x A:161-179,180-193,193-200,220-225
3faw A:862-871,938-956,958-964,1080-1089
3cwm A:53-69,88-105,111-122,379-389
2wxz C:101-116,142-159,168-180,437-447
2wxz A:101-116,142-159,168-180,437-447
3eox A:35-51,68-84,89-101,367-377
2w8p A:350-368,385-403,408-413,422-427
2wxx D:101-116,142-159,168-180,437-448
2wxx A:101-116,142-159,168-180,437-448
2wxx B:101-116,142-159,168-180,437-448
2wxx C:101-117,142-159,168-180,437-448
2ya2 A:383-392,458-479,481-487,607-616
2ya0 A:383-392,458-479,481-487,607-616
3clo A:4-16,23-42,43-51,151-155
3clo B:4-16,23-42,43-51,151-155