1. b.2.6 Cytochrome f, large domain
Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
1cfm d1cfmb1 B:19-26,31-35,144-155,235-247
1ewh d1ewhb1 B:19-26,31-35,144-155,235-247
1e2w d1e2wb1 B:19-26,31-35,144-155,235-247
1e2v d1e2va1 A:19-26,31-35,144-155,235-247
1cfm d1cfma1 A:19-26,31-35,144-155,235-247
1e2z d1e2zb1 B:19-26,31-35,144-155,235-247
1e2z d1e2zc1 C:19-26,31-35,144-155,235-247
1e2z d1e2za1 A:19-26,31-35,144-155,235-247
1e2v d1e2vb1 B:319-326,331-335,443-455,535-547
1e2w d1e2wa1 A:19-26,31-35,144-155,235-247
1ewh d1ewha1 A:19-26,31-35,143-155,235-247
1ewh d1ewhc1 C:19-26,31-35,144-155,235-247
1e2v d1e2vc1 C:619-626,631-635,744-755,835-847
1cfm d1cfmc1 C:19-26,31-35,144-155,235-247
1vf5 d1vf5p1 P:20-27,31-36,145-156,238-250
1ci3 d1ci3m1 M:19-26,30-35,145-156,234-246
1vf5 d1vf5c1 C:20-27,31-36,145-156,238-250
1vf5 d1vf5c1 C:1-10,42-53,70-79,112-117
1vf5 d1vf5p1 P:1-10,42-53,70-79,112-117
2. i.4.1 Electron transport chains
Electron transport chains
2jxm d2jxmb1 B:19-26,30-35,146-157,234-246
2pcf d2pcfb_ B:19-26,30-35,143-155,234-246
2jxm d2jxmb1 B:1-10,41-52,69-77,113-122
3. b.3.6 Aromatic compound dioxygenase
Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
1ykk d1ykke1 E:16-23,47-58,65-72,91-98
1ykp d1ykpg1 G:16-23,47-58,65-72,91-98
1yko d1ykoe1 E:16-23,47-58,65-72,91-98
1ykm d1ykmc1 C:16-23,47-58,65-72,91-98
1ykp d1ykpk1 K:16-23,47-58,65-72,91-98
1yko d1ykog1 G:16-23,47-58,65-72,91-98
1yko d1ykoc1 C:16-23,47-58,65-72,91-98
1ykp d1ykpc1 C:16-23,47-58,65-72,91-98
1ykp d1ykpe1 E:16-23,47-58,65-72,91-98
4. b.1.5 Transglutaminase, two C-terminal domains
Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
2q3z d2q3za2 A:310-318,472-479,559-571,572-584
5. b.82.2 Clavaminate synthase-like Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold !
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1s4c d1s4ca1 A:16-29,61-66,67-76,118-126
1s4c d1s4cd1 D:16-30,61-66,67-76,119-126
1jop d1jopd_ D:16-29,61-65,67-76,118-126
1s4c d1s4cb1 B:16-30,61-66,67-76,119-126
1jop d1jopc_ C:16-30,61-66,67-76,119-126
1vrb d1vrbd1 D:7-14,144-148,149-157,212-220
1s4c d1s4cc1 C:16-30,61-65,67-76,119-126
1jop d1jopa_ A:16-30,61-65,67-76,119-126
1jop d1jopb_ B:16-30,61-65,67-76,117-126
6. c.52.1 Restriction endonuclease-like
Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
1bua d1buaa_ A:2-18,102-110,129-141,162-173
1b96 d1b96a_ A:2-18,102-110,129-141,162-173
1sx8 d1sx8a_ A:2-18,102-110,129-141,162-173
4rve d4rveb_ B:2-13,102-110,129-141,162-173
2b0d d2b0da1 A:2-18,102-110,129-141,162-173
1eo4 d1eo4a_ A:2-19,102-110,129-141,162-173
1eoo d1eoob_ B:2-19,102-110,129-141,162-173
1bsu d1bsua_ A:2-19,102-110,129-141,162-173
1dmu d1dmua_ A:23-46,154-158,204-222,228-240
7. e.1.1 Serpins
Serpins contains a cluster of helices and a beta-sandwich
1dzg d1dzgi_ I:291-299,367-377,407-416,417-427
1dvm d1dvmc_ C:246-254,318-329,357-366,367-377
1ant d1anti_ I:291-299,365-376,407-416,417-427
2hij d2hiji1 I:291-299,365-376,407-416,417-427
1dzh d1dzhi_ I:291-299,365-376,407-416,417-427
1e04 d1e04i_ I:291-299,364-376,407-416,417-427
1ath d1atha_ A:291-299,364-376,407-416,417-427
1atu d1atua_ A:259-267,330-341,369-378,379-389
1t1f d1t1fb1 B:291-299,365-377,407-416,417-427
1t1f d1t1fc1 C:291-299,365-377,407-416,417-427
1t1f d1t1fa1 A:291-299,365-377,407-416,417-427
2b5t d2b5ti1 I:291-299,365-377,407-416,417-427
2ant d2anti_ I:291-299,364-377,407-416,417-427
1e05 d1e05i_ I:291-299,364-377,407-416,417-427
1nq9 d1nq9i_ I:291-300,365-377,407-416,417-427
1br8 d1br8i_ I:291-299,363-376,407-416,417-427
2beh d2behi1 I:300-311,365-376,407-416,417-427
1qlp d1qlpa_ A:268-279,331-341,369-378,379-389
1xqj d1xqja_ A:251-260,316-327,353-362,363-373
2hij d2hiji1 I:300-311,365-376,407-416,417-427
1oyh d1oyhi_ I:300-311,365-376,407-416,417-427
1ant d1anti_ I:300-311,365-376,407-416,417-427
1e04 d1e04i_ I:300-311,364-376,407-416,417-427
1dzh d1dzhi_ I:300-311,365-376,407-416,417-427
1e03 d1e03i_ I:300-311,365-376,407-416,417-427
1dzh d1dzhl_ L:291-299,363-377,407-416,417-427
2beh d2behl1 L:291-299,363-377,407-416,417-427
1br8 d1br8l_ L:291-299,363-377,407-416,417-427
1kct d1kcta_ A:259-267,329-340,370-377,380-388
1ath d1atha_ A:300-311,364-376,407-416,417-427
2ant d2antl_ L:291-299,363-377,407-416,417-427
1dzg d1dzgl_ L:291-299,363-377,407-416,417-427
1ant d1antl_ L:291-299,363-377,407-416,417-427
1e04 d1e04l_ L:291-299,363-377,407-416,417-427
1nq9 d1nq9l_ L:291-299,363-377,407-416,417-427
1e05 d1e05l_ L:291-299,363-377,407-416,417-427
1sek d1seka_ A:261-272,325-336,366-374,375-384
3evj d3evjl1 L:291-299,363-377,407-416,417-427
1qmn d1qmna_ A:259-267,326-342,373-381,385-393
8. b.1.18 E set domains "Early" Ig-like fold families possibly related to the immunoglobulin and/or fibronectin type III superfamilies !
Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
2q0z d2q0zx2 X:111-127,224-237,255-265,266-276
2q0z d2q0zx2 X:128-145,209-217,292-305,310-320
9. b.82.1 RmlC-like cupins
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
2ic1 d2ic1a1 A:29-41,81-88,91-99,128-134
10. b.30.5 Galactose mutarotase-like probable carbohydrate-binding domain in enzymes acting on sugars !
Supersandwich sandwich; 18 strands in 2 sheets
1txk d1txka2 A:24-39,155-160,202-212,213-225
11. b.29.1 Concanavalin A-like lectins/glucanases
Concanavalin A-like lectins/glucanases sandwich; 12-14 strands in 2 sheets; complex topology
2fnj d2fnja1 A:38-48,150-155,189-197,198-207
2ihs d2ihsb1 B:38-48,150-155,189-197,198-207
2ihs d2ihsa1 A:38-48,150-155,189-197,198-207
12. b.61.3 D-aminopeptidase, middle and C-terminal domains
Streptavidin-like barrel, closed; n=8, S=10; meander
1ei5 d1ei5a2 A:112-121,355-365,486-496,498-508
13. b.69.4 WD40 repeat-like also contains 8-bladed propellers !
7-bladed beta-propeller consists of seven 4-stranded beta-sheet motifs; meander
2ovp d2ovpb2 B:2349-2368,2601-2609,2635-2642,2644-2652
14. f.7.1 Lipovitellin-phosvitin complex; beta-sheet shell regions
Lipovitellin-phosvitin complex; beta-sheet shell regions contains several large open beta-sheets
1lsh d1lsha3 A:120-136,223-239,791-812,814-837
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 184 (enumeration index: query221) of S4
2rkc A:204-213,537-545,575-587,592-606
2xjt A:56-63,148-160,161-168,189-194
2xjt A:50-57,148-160,161-168,189-194
2xjs A:56-63,148-160,161-168,189-194
2xjs A:50-57,148-160,161-168,189-194
3mx6 B:6-32,188-193,194-207,227-240
2ceo B:256-264,327-339,370-379,380-390
2ceo A:256-264,327-339,370-379,380-390
4a0b D:118-137,346-354,386-394,403-412
4a0b B:118-137,346-354,386-394,403-412
3alz A:204-213,536-546,575-587,592-606
2hpo A:377-396,458-469,482-492,508-513
2hi9 B:264-275,326-337,368-375,377-385
2hi9 B:255-263,326-337,368-375,377-385
3b2p A:377-396,458-469,482-492,508-513
3im2 A:1953-1969,2065-2077,2097-2107,2108-2118
3j09 B:66-78,247-254,253-259,292-298
3j09 A:66-78,247-254,253-259,292-298
2nxv B:91-107,128-136,146-150,191-197
2nxv A:91-107,128-136,146-150,191-197
2okx A:396-404,447-458,458-469,484-492
2okx B:396-404,447-458,458-469,484-492
1xu8 B:251-260,316-327,353-362,363-373
1xu8 A:251-260,316-327,353-362,363-373
3alx B:204-213,536-546,575-587,592-606
3alx D:204-213,536-546,575-587,592-606
3alx A:204-213,536-546,575-587,592-606
3alx C:204-213,536-544,575-588,590-607
3t8v A:576-595,664-675,688-699,708-713
2ezv A:9-32,109-113,150-168,175-186
2ezv B:9-32,109-113,150-168,175-186
4a09 B:118-137,346-354,386-394,403-412
3ebi A:576-595,664-675,688-699,707-713
2xjv A:56-63,148-160,161-168,189-194
2xjv A:50-57,148-160,161-168,189-194
3b2x A:377-396,458-469,482-492,508-513
2vdy B:250-258,317-333,360-369,370-380
3puu A:377-396,458-469,482-492,508-513
2xdv A:37-47,178-182,183-191,229-236
2hpt A:377-396,458-469,482-492,508-513
3b34 A:377-396,458-469,482-492,508-513
2qgi B:91-107,128-136,146-150,191-197
2qgi A:91-107,128-136,146-150,191-197
3h5c A:287-295,359-370,398-407,408-418
2dut B:279-289,343-354,386-395,396-406
2dut D:279-289,343-354,386-395,396-406
2dut B:269-278,343-354,386-395,396-406
2dut A:279-289,343-354,386-395,396-406
2dut C:279-289,343-354,386-395,396-406
2dut A:269-278,343-354,386-395,396-406
2dut D:269-278,343-354,386-395,396-406
2dut C:269-278,343-354,386-395,396-406
2gtq A:373-392,453-463,476-486,502-508
3rrm C:63-74,304-309,362-370,372-381
3inb A:204-213,536-545,575-586,593-602
3inb B:204-213,536-545,575-587,594-606
3mr1 A:6-32,188-193,194-207,227-239
3mr1 B:6-32,188-193,194-207,227-239
3mr1 D:6-32,188-193,194-207,227-239
3mr1 C:6-32,188-193,194-207,227-240
3qjx A:377-396,458-469,482-492,508-513
3b3b A:377-396,458-469,482-492,508-513
3oq3 B:19-26,88-94,103-111,113-125
2xjr A:56-63,148-160,161-168,189-194
2xjr A:50-57,148-160,161-168,189-194
3ebh A:576-595,664-675,688-699,708-713
2dqm A:377-396,458-469,482-492,508-513
2nnf B:1-21,30-35,92-103,104-115
2nnf A:8-21,30-35,92-103,104-117
2oxh Y:1-12,21-25,81-92,94-107
2oxh D:1-12,21-25,81-92,94-107
2oxh F:2-12,21-25,81-92,94-106
2oxh B:2-12,21-25,81-92,94-106
3alw A:204-213,536-545,575-589,590-606
3q44 A:576-595,664-675,688-699,708-713
3ei1 B:118-137,346-354,386-394,403-412
4a0a B:118-137,346-354,386-394,403-412
3ei2 B:118-137,346-354,386-394,403-412
1wz9 A:251-260,316-327,353-362,363-373
2zb5 A:204-213,537-545,575-587,592-607
3ebg A:576-595,664-675,688-699,707-713
3f8u D:83-91,132-144,246-256,257-270
3f8u B:83-91,132-144,246-256,257-270
2f03 C:9-32,109-113,149-168,175-186
2f03 A:9-32,109-113,150-168,175-186
2oxg Y:1-12,21-25,81-92,94-107
2oxg F:2-12,21-25,81-92,94-107
2oxg B:1-12,21-25,81-92,94-105
2oxg D:2-12,20-25,81-92,94-107
3im1 A:1953-1969,2065-2077,2097-2107,2108-2118
2xjp A:56-63,148-160,161-168,189-194
2xjp A:50-57,148-160,161-168,189-194
2xjq A:56-63,148-158,161-168,189-194
2xjq A:50-57,148-158,161-168,189-194
3q43 A:576-595,664-675,688-699,708-713
2ox5 Y:1-12,21-25,81-92,94-107
2ox5 F:2-12,21-25,81-92,94-107
2ox5 D:2-12,21-25,81-92,94-107
2ox5 B:1-12,21-25,81-92,94-107
3hib A:1953-1969,2067-2077,2097-2107,2108-2118
2zt9 C:20-27,32-36,144-156,238-250
2zt9 C:1-10,42-52,70-78,112-121
2zxg A:377-396,458-469,482-492,508-513
2wb7 A:293-303,410-418,494-511,513-525
3dlw A:260-268,328-344,375-383,388-395
2hj0 A:11-19,385-389,492-500,502-510
2hj0 B:11-19,385-389,492-500,502-510
2xju A:56-63,148-160,161-168,189-194
2xju A:50-57,148-160,161-168,189-194
3r4l A:269-277,340-352,380-389,390-400
3r4l A:278-289,340-352,380-389,390-400
3hb3 B:94-106,161-166,167-177,199-206
2dq6 A:377-396,458-469,482-492,508-513
3f1s A:287-295,359-370,398-407,408-418
2ze4 A:6-21,198-207,451-457,465-474
2ge5 A:2-14,101-108,130-141,162-173
2ge5 B:2-19,102-110,129-141,162-173
3b37 A:377-396,458-469,482-492,508-513
2vdx B:250-258,317-333,360-369,370-380
3ei3 B:118-137,346-354,386-394,403-412
2v95 A:242-250,311-323,351-360,361-371
3coo B:42-52,60-66,155-166,167-172
2w2i B:114-126,175-182,182-190,274-283
2w2i A:114-126,175-182,182-190,274-283
3hr6 A:101-111,138-143,147-154,166-171
3eox A:246-254,318-330,357-366,367-377
3ei4 D:82-104,309-317,349-357,369-378
3ei4 F:82-104,309-317,349-357,369-378
3ei4 B:82-104,309-317,349-357,369-378
3eqe A:18-30,69-78,80-88,115-121
3eqe B:18-29,69-78,80-88,115-121
3kv6 D:119-129,158-163,296-306,335-343
2nnc A:8-21,30-35,92-103,104-117
2nnc B:1-21,30-35,92-103,104-115
3ked A:377-396,458-469,482-492,508-513
2e76 C:1-10,42-52,70-79,112-121
2e76 C:20-27,32-36,144-156,238-250
2e75 C:20-27,32-36,145-156,238-250
2d2c C:20-27,31-36,145-156,238-249
2d2c P:20-27,31-36,145-156,238-249
2e74 C:1-10,42-52,70-78,112-121
2e74 C:20-27,32-36,144-156,238-250