1. b.121.4 Positive stranded ssRNA viruses
Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
1ncq d1ncq.1 B:20-27,27-34,185-191,195-203
1na1 d1na1.1 B:20-27,27-34,185-191,195-203
1po1 d1po1.1 2:20-27,27-34,193-200,204-212
1po2 d1po2.1 2:20-27,27-34,193-200,204-212
2. b.80.1 Pectin lyase-like superhelix turns are made of 3 strands each !
Single-stranded right-handed beta-helix superhelix turns are made of parallel beta-strands and (short) turns
1ogo d1ogox2 X:127-132,408-416,417-421,436-445
1ogo d1ogox2 X:33-37,273-277,287-293,293-298
1ogm d1ogmx2 X:33-37,273-277,287-293,293-298
1ogo d1ogox2 X:191-200,338-344,349-355,363-369
1ogm d1ogmx2 X:191-200,338-344,349-355,363-369
1ogo d1ogox2 X:97-107,338-344,349-355,363-369
1ogm d1ogmx2 X:97-107,338-344,349-355,363-369
3. b.6.1 Cupredoxins contains copper-binding site !
Cupredoxin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands
2j5w d2j5wa5 A:875-882,893-905,953-957,959-968
1kcw d1kcwa6 A:875-882,893-906,953-957,959-968
1kcw d1kcwa4 A:534-542,556-567,615-619,621-631
1kcw d1kcwa2 A:174-182,195-206,254-258,259-269
4. b.1.1 Immunoglobulin
Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
1bih d1bihb4 B:6-10,317-322,325-331,383-395
1bih d1biha4 A:6-10,317-322,326-331,383-395
1sy6 d1sy6a1 A:18-25,71-81,128-135,195-202
5. c.8.4 PA domain
The "swivelling" beta/beta/alpha domain 3 layers: b/b/a; the central sheet is parallel, and the other one is antiparallel; there are some variations in topology ! this domain is thought to be mobile in most multi-domain proteins known to contain it
1cx8 d1cx8g2 G:198-205,275-283,296-301,332-337
2nsu d2nsua2 A:198-205,275-283,296-301,332-337
1cx8 d1cx8a2 A:198-205,275-283,296-301,332-337
2nsu d2nsub2 B:198-205,275-283,296-301,332-337
1cx8 d1cx8b2 B:198-205,275-283,296-301,332-337
6. i.21.1 Transferrin receptor-transferrin complex
Transferrin receptor-transferrin complex
1suv d1suva_ A:198-205,275-283,296-301,332-337
1suv d1suvb_ B:198-205,275-283,296-301,332-337
7. b.80.4 Alpha subunit of glutamate synthase, C-terminal domain
Single-stranded right-handed beta-helix superhelix turns are made of parallel beta-strands and (short) turns
1lm1 d1lm1a1 A:998-1004,1385-1389,1388-1396,1399-1404
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 58 (enumeration index: query223) of S4
2g3n F:574-581,613-619,636-642,647-653
2g3n E:574-581,613-619,636-642,647-653
2g3n A:574-581,613-619,636-642,647-653
2g3n D:574-581,613-619,636-642,647-653
2g3n B:574-581,613-619,636-642,647-653
2g3n C:574-581,613-619,636-642,647-653
3b8y A:31-41,157-163,174-179,178-186
3b8y A:31-41,185-191,193-197,207-214
3b8y B:31-41,185-190,194-201,207-214
3b8y B:31-41,157-163,174-179,178-186
3b8y A:31-41,185-191,196-201,207-214
3eif A:571-575,595-602,604-615,701-711
3ctt A:699-704,751-758,794-804,815-820
3lpp A:728-733,780-787,823-834,843-849
3l4w A:699-704,751-758,794-805,814-820
3l4t A:699-704,751-758,794-805,814-820
3k1q B:237-241,1079-1089,1092-1096,1114-1121
2uve B:51-58,389-395,404-408,420-428
2uve A:280-285,427-433,435-441,454-460
2uve B:280-285,427-433,435-441,454-460
2uve A:51-58,389-395,401-405,420-428
2uve A:51-58,389-395,404-409,420-428
2uve B:51-58,363-369,382-387,389-395
2uve B:280-285,394-401,401-405,427-433
2uve A:51-58,363-369,382-387,389-395
2uve A:280-285,394-401,401-405,427-433
2gy7 B:108-120,129-135,136-146,201-210
3l4y A:699-704,751-758,794-804,814-820
3cg8 A:173-181,188-197,209-215,215-227
3eqo A:225-231,605-611,616-621,628-634
3eqo B:247-253,628-634,665-670,677-683
3eqo B:202-206,605-611,616-621,628-634
3eqo A:202-206,605-611,616-621,628-634
3eqo A:277-285,677-683,700-706,714-720
3eqo B:225-231,605-611,616-621,628-634
3eqo A:176-182,520-527,553-560,567-574
3eqo A:247-253,628-634,665-670,677-683
3eqo A:202-206,605-611,613-617,628-634
3eqo B:202-206,628-634,665-670,677-683
3eqo B:279-285,677-683,700-706,714-720
3eqo A:202-206,628-634,665-670,677-683
3eqo B:202-206,605-611,613-617,628-634
3eqo A:247-253,677-683,700-706,714-720
3eqo B:176-182,520-527,553-559,567-574
3eqo B:202-206,567-574,591-599,605-611
3eqo A:225-231,628-634,665-670,677-683
3eqo A:148-155,520-527,553-560,567-574
3eqo B:247-253,677-683,700-706,714-720
3eqo B:225-231,628-634,665-670,677-683
3qwn C:70-77,99-103,162-173,178-189
3qwn K:70-77,99-103,162-173,178-189
3qwn E:70-77,99-103,162-173,178-189
2qub A:433-440,504-510,513-520,520-529
2qub I:433-440,504-510,513-520,520-529
2qub K:433-440,504-510,513-520,520-529
2qub G:433-440,504-510,513-520,520-529
2qub C:433-440,504-510,513-520,520-529
2fbo J:3-10,146-150,152-160,242-252
2v5s A:2-9,315-320,322-335,376-388
3l4x A:699-704,751-758,794-805,814-820
3e7j A:537-550,699-706,713-720,724-731
3e7j B:537-550,699-706,713-720,724-731
3i74 B:596-600,655-662,669-681,746-757
3kld A:24-32,323-328,329-341,390-402
3jxa B:25-32,323-328,329-337,390-402
3jur B:100-106,192-197,204-210,215-220
3jur B:107-113,192-197,204-210,215-220
2uvf B:280-285,368-375,379-383,394-401
2uvf A:280-285,427-433,435-441,454-460
2uvf B:51-58,389-395,404-408,420-428
2uvf A:51-58,389-395,401-405,420-428
2uvf A:51-58,389-395,404-408,420-428
2uvf A:280-285,394-401,401-405,427-433
2uvf B:51-58,363-369,382-387,389-395
2uvf A:51-58,363-369,382-387,389-395
2uvf B:280-285,394-401,401-405,427-433
2uvf B:280-285,427-433,435-441,454-460
2om5 A:5-13,304-310,312-322,371-384
3l4z A:699-704,751-758,794-805,814-820
3iyl Y:237-242,1079-1089,1091-1096,1114-1121
3l4v A:699-704,751-758,794-805,814-820
2qua A:433-440,504-510,513-520,520-529
2z8g A:174-183,313-319,324-329,340-346
2z8g A:95-105,313-319,324-329,340-346
2z8g A:48-52,246-250,260-267,267-272
2z8g A:122-127,413-422,427-432,464-470
2z8g B:48-52,246-250,260-267,267-272
2z8g B:95-105,313-319,324-329,340-346
2z8g B:122-127,413-422,427-432,464-470
2z8g A:174-183,364-372,371-375,385-393
2z8g B:174-183,364-372,371-375,385-393
2z8g B:95-105,364-372,371-375,385-393
2z8g B:174-183,313-319,324-329,340-346
2z8g A:95-105,364-372,371-375,385-393
2z8g B:122-127,385-393,393-398,413-422
2z8g A:122-127,385-393,393-398,413-422
2gy5 A:108-120,129-135,137-146,201-212
3p3y A:40-47,344-349,350-362,414-426
3b4n A:31-41,157-163,172-179,178-186
3b4n B:31-41,157-163,172-179,178-186
3s9l B:198-205,277-283,297-301,333-337
2v5m A:2-10,315-320,321-333,376-388
2qly A:699-704,751-758,794-805,815-820
3eqn B:225-231,605-611,616-621,628-634
3eqn B:247-253,628-634,665-670,677-683
3eqn B:202-206,605-611,613-617,628-634
3eqn A:149-155,487-494,502-506,520-527
3eqn A:176-182,520-527,553-560,567-574
3eqn B:277-285,677-683,700-708,714-720
3eqn B:202-206,628-634,665-670,677-683
3eqn B:202-206,567-574,591-599,605-611
3eqn A:225-231,628-634,665-670,677-683
3eqn B:176-182,520-527,553-559,567-574
3eqn B:247-253,677-683,700-708,714-720
3eqn A:279-285,677-683,700-706,714-720
3eqn B:149-155,487-494,502-506,520-527
3eqn A:202-206,605-611,616-621,628-634
3eqn B:202-206,605-611,616-621,628-634
3eqn A:247-253,677-683,700-706,714-720
3eqn A:202-206,567-574,591-599,605-611
3eqn A:202-206,628-634,665-670,677-683
3eqn B:149-155,520-527,553-559,567-574
3eqn A:202-206,605-611,613-617,628-634
3eqn A:149-155,520-527,553-560,567-574
3eqn A:247-253,628-634,665-670,677-683
3eqn B:225-231,628-634,665-670,677-683
3eqn A:225-231,605-611,616-621,628-634
2qmj A:699-704,751-758,794-805,814-820
1wmr B:48-52,246-250,260-267,267-272
1wmr A:122-127,413-422,427-432,464-470
1wmr B:95-105,364-372,371-375,385-393
1wmr B:95-105,313-319,324-329,340-346
1wmr A:122-127,385-393,393-398,413-422
1wmr A:174-183,364-372,371-375,385-393
1wmr B:122-127,413-422,427-432,464-470
1wmr B:174-183,313-319,324-329,340-346
1wmr A:48-52,246-251,260-267,267-272
1wmr A:95-105,364-372,371-375,385-393
1wmr B:174-183,364-372,371-375,385-393
1wmr A:95-105,313-319,324-329,340-346
1wmr B:122-127,385-393,393-398,413-422
1wmr A:174-183,313-319,324-329,340-346
3l4u A:699-704,751-758,794-805,814-820
2fut B:537-550,699-706,713-720,724-731
1x0c B:95-105,313-319,324-329,340-346
1x0c B:95-105,364-372,371-375,385-393
1x0c A:122-127,385-393,393-398,413-422
1x0c A:174-183,364-372,371-375,385-393
1x0c B:174-183,364-372,371-375,385-393
1x0c B:122-127,413-422,427-432,464-470
1x0c B:174-183,313-319,324-329,340-346
1x0c B:48-52,246-250,260-267,267-272
1x0c A:95-105,364-372,371-375,385-393
1x0c A:48-52,246-250,260-267,267-272
1x0c A:95-105,313-319,324-329,340-346
1x0c A:122-127,413-422,427-432,464-470
1x0c B:122-127,385-393,393-398,413-422
1x0c A:174-183,313-319,324-329,340-346
3s9m B:198-205,277-283,297-301,333-337
2g3m A:574-581,613-619,636-642,647-653
2g3m C:574-581,613-619,636-642,647-653
2g3m D:574-581,613-619,636-642,647-653
2g3m F:574-581,613-619,636-642,647-653
2g3m E:574-581,613-619,636-642,647-653
2g3m B:574-581,613-619,636-642,647-653
3i6s A:596-600,655-662,669-681,746-757
3i6s B:596-600,655-662,669-681,746-757
2j5w A:174-182,195-206,254-259,259-269