1. b.69.2 YVTN repeat-like/Quinoprotein amine dehydrogenase
7-bladed beta-propeller consists of seven 4-stranded beta-sheet motifs; meander
1mg3 d1mg3i_ I:45-52,81-86,344-352,377-382
2j56 d2j56h1 H:45-52,81-86,344-352,377-382
1mg3 d1mg3a_ A:45-52,81-86,343-352,377-382
2j55 d2j55h1 H:45-52,81-86,344-352,377-382
2j57 d2j57j1 J:45-52,81-86,344-352,377-382
2mta d2mtah_ H:32-39,68-73,331-339,364-369
2j56 d2j56j1 J:45-52,81-86,344-352,377-382
1mg2 d1mg2a_ A:45-52,81-86,343-352,377-382
1mg3 d1mg3e_ E:45-52,81-86,344-352,377-382
2j55 d2j55j1 J:45-52,81-86,344-352,377-382
1mg2 d1mg2i_ I:45-52,81-86,343-352,377-382
1mg2 d1mg2e_ E:45-52,81-86,343-352,377-382
2gc4 d2gc4i1 I:45-52,81-86,344-352,377-382
1mg3 d1mg3m_ M:45-52,81-86,343-352,377-382
1mg2 d1mg2m_ M:45-52,81-86,343-352,377-382
2gc7 d2gc7i1 I:45-52,81-86,344-352,377-382
2gc4 d2gc4m1 M:45-52,81-86,344-352,377-382
2gc7 d2gc7m1 M:45-52,81-86,344-352,377-382
2j57 d2j57g1 G:45-52,81-86,343-352,377-382
1mda d1mdah_ H:32-39,68-73,327-335,359-364
2j57 d2j57h1 H:45-52,81-86,343-352,377-382
2bbk d2bbkj_ J:32-39,68-73,330-339,364-369
2mad d2madh_ H:33-40,69-74,330-339,364-369
1mae d1maeh_ H:33-40,69-74,330-339,364-369
2gc4 d2gc4a1 A:45-52,81-86,343-352,377-382
2j57 d2j57i1 I:45-52,81-86,343-352,377-382
2gc7 d2gc7e1 E:45-52,81-86,343-352,377-382
2bbk d2bbkh_ H:32-39,68-73,330-339,364-369
1maf d1mafh_ H:33-40,69-74,330-339,364-369
2gc4 d2gc4e1 E:45-52,81-86,343-352,377-382
2gc7 d2gc7a1 A:45-52,81-86,343-352,377-382
1mda d1mdaj_ J:32-39,68-73,326-335,359-364
2. b.68.11 Kelch motif
6-bladed beta-propeller consists of six 4-stranded beta-sheet motifs; meander
2flu d2flux1 X:327-335,391-399,564-574,602-609
1x2r d1x2ra1 A:325-335,391-399,564-574,602-611
1x2j d1x2ja1 A:326-335,391-399,564-574,602-610
3. b.68.4 TolB, C-terminal domain
6-bladed beta-propeller consists of six 4-stranded beta-sheet motifs; meander
2hqs d2hqsd1 D:166-174,201-209,411-417,420-428
2hqs d2hqsb1 B:166-174,201-209,411-417,420-428
2hqs d2hqsf1 F:166-174,201-209,411-417,420-428
2hqs d2hqsa1 A:166-174,201-209,411-417,420-428
2ivz d2ivza1 A:166-174,201-209,411-418,420-428
2ivz d2ivzd1 D:166-174,201-209,411-418,420-428
4. d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) N-terminal residue provides two catalytic groups, nucleophile and proton donor !
Ntn hydrolase-like 4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
1te5 d1te5b_ B:4-11,179-187,207-215,220-227
1te5 d1te5a_ A:4-11,179-187,207-215,220-227
5. b.82.1 RmlC-like cupins
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1yll d1ylla1 A:2-9,22-31,155-163,162-171
1sfn d1sfna_ A:1014-1020,1034-1042,1203-1209,1210-1219
1sfn d1sfnb_ B:2014-2020,2034-2042,2203-2209,2210-2219
1yll d1ylld1 D:3-9,21-31,155-163,162-171
1sef d1sefa_ A:28-34,47-56,220-226,228-236
1yll d1yllc1 C:2-9,21-31,155-163,162-171
1yll d1yllb1 B:3-9,21-30,155-163,162-171
1y3t d1y3ta1 A:14-20,30-38,256-262,263-271
1y3t d1y3tb1 B:14-20,30-38,256-262,263-271
1rc6 d1rc6a_ A:1025-1030,1044-1052,1217-1223,1225-1233
1rc6 d1rc6b_ B:1025-1030,1044-1052,1217-1223,1225-1233
1gqh d1gqhb_ B:15-21,32-41,292-296,297-306
1j1l d1j1la_ A:3-13,22-28,207-215,214-222
1h1m d1h1mc_ C:15-21,32-40,292-298,297-306
1gqh d1gqhc_ C:15-21,32-40,289-296,297-306
1gqh d1gqhd_ D:15-21,32-41,292-296,297-306
1gqg d1gqgd_ D:15-21,32-40,292-298,297-306
1juh d1juhd_ D:15-21,32-40,292-297,298-306
1gqg d1gqga_ A:15-21,32-40,289-296,297-306
1gqg d1gqgc_ C:15-21,32-40,292-296,297-306
1gqh d1gqha_ A:15-21,32-40,289-296,297-306
1juh d1juha_ A:15-21,32-40,289-296,297-306
1h1m d1h1ma_ A:15-21,32-40,289-296,297-306
1gqg d1gqgb_ B:15-21,32-40,292-296,297-306
1h1i d1h1ia_ A:15-21,32-40,289-296,297-306
1h1i d1h1ib_ B:15-21,32-40,292-296,297-306
1h1i d1h1ic_ C:15-21,32-40,292-296,298-306
1h1m d1h1mb_ B:15-21,32-40,292-296,297-306
1juh d1juhc_ C:15-21,32-40,292-296,297-306
1juh d1juhb_ B:15-21,32-40,292-296,297-306
1h1m d1h1md_ D:15-21,32-40,292-296,297-306
1h1i d1h1id_ D:15-21,32-40,292-296,297-306
1pm7 d1pm7b_ B:10-16,23-31,97-105,109-115
2ixc d2ixcb1 B:10-16,23-31,96-105,109-115
2ixc d2ixcd1 D:10-16,23-31,97-105,109-116
1l3j d1l3ja_ A:48-52,62-69,298-308,307-315
1j58 d1j58a_ A:48-52,62-69,298-308,307-315
1uw8 d1uw8a_ A:48-52,62-69,298-308,307-315
1pmi d1pmia_ A:5-10,44-52,401-408,407-416
2ixc d2ixca1 A:10-16,23-31,96-105,109-116
1pm7 d1pm7a_ A:10-16,23-31,96-105,109-116
1uij d1uijc2 C:11-15,27-34,303-314,313-322
1sq4 d1sq4b_ B:29-35,51-58,229-237,236-244
1sq4 d1sq4a_ A:29-35,51-58,229-237,236-245
1uij d1uijf2 F:11-15,27-34,303-314,313-322
1uij d1uijd2 D:11-15,27-34,303-314,313-321
1uij d1uija2 A:11-15,27-34,303-314,313-321
1uij d1uije2 E:11-15,27-34,303-313,314-321
1tq5 d1tq5a1 A:1-7,17-24,196-202,201-208
6. b.69.11 Putative isomerase YbhE
7-bladed beta-propeller consists of seven 4-stranded beta-sheet motifs; meander
1ri6 d1ri6a_ A:3-13,59-70,289-297,323-334
7. b.110.1 Cloacin translocation domain
Cloacin translocation domain complex fold made of several coiled beta-sheets
1jch d1jcha2 A:96-101,104-110,136-140,147-156
1jch d1jchc2 C:96-101,104-110,136-140,147-156
2b5u d2b5uc2 C:93-97,101-109,130-140,153-161
2b5u d2b5ua2 A:93-97,101-109,130-140,153-161
1rh1 d1rh1a1 A:69-74,86-91,119-129,138-147
8. b.67.3 Apyrase distorted propeller with an alpha helix inserted between the second and third blades !
5-bladed beta-propeller consists of five 4-stranded beta-sheet motifs; meander
1s1d d1s1db_ B:31-42,96-104,317-323,324-331
2h2n d2h2na1 A:31-42,96-104,317-323,324-331
2h2n d2h2nb1 B:31-42,96-104,317-323,324-331
1s1d d1s1da_ A:31-42,96-104,317-323,324-331
1s18 d1s18b_ B:31-42,96-104,317-323,324-331
1s18 d1s18a_ A:31-42,96-104,317-323,324-331
9. b.19.1 Viral protein domain forms homotrimers !
Viral protein domain sandwich; 9 strands in 2 sheets; jelly-roll; form trimers
1ahs d1ahsc_ C:156-164,166-170,193-197,238-251
2btv d2btvt2 T:157-165,167-171,192-197,238-253
1ahs d1ahsb_ B:156-165,166-170,192-196,238-251
2btv d2btvh2 H:157-165,167-171,192-196,238-253
2btv d2btvj2 J:157-165,167-171,192-196,238-253
1bvp d1bvp32 3:157-165,167-171,192-196,238-253
1bvp d1bvp62 6:157-165,167-171,192-196,238-253
2btv d2btvf2 F:157-165,167-171,192-196,238-253
2btv d2btvc2 C:157-165,167-171,192-196,238-253
10. f.6.1 Leukocidin-like
Leukocidin-like subunit fold contains beta-sandwich of Ig-like (grerk-key) topology and a beta-ribbon arm that forms an oligomeric transmembrane barrel
1pvl d1pvla_ A:93-100,108-118,160-169,219-233
1t5r d1t5rd_ D:88-95,103-113,152-161,204-217
1lkf d1lkfa_ A:93-100,108-118,160-169,219-232
3lkf d3lkfa_ A:93-100,108-118,160-169,219-232
2lkf d2lkfa_ A:93-100,108-118,160-169,219-232
3lkf d3lkfa_ A:48-61,72-91,137-146,219-232
11. b.68.1 Sialidases
6-bladed beta-propeller consists of six 4-stranded beta-sheet motifs; meander
1v0f d1v0fc1 C:313-321,354-363,685-696,744-754
1v0e d1v0ef1 F:313-321,354-363,685-696,744-754
1v0f d1v0fa1 A:313-321,354-363,685-696,744-754
1v0e d1v0eb1 B:313-321,354-363,685-696,744-754
1v0e d1v0ee1 E:313-321,354-363,685-696,744-754
1v0f d1v0fd1 D:313-321,354-363,685-696,744-754
1v0f d1v0fe1 E:313-321,354-363,685-696,744-754
1v0e d1v0ed1 D:313-321,354-363,685-696,744-754
1v0f d1v0ff1 F:313-320,354-363,685-696,744-754
1v0f d1v0fb1 B:313-320,354-363,685-696,744-754
1v0e d1v0ea1 A:313-320,354-363,685-696,744-754
1v0e d1v0ec1 C:313-320,354-363,685-696,744-754
2f10 d2f10a1 A:6-15,50-61,320-329,360-368
12. d.172.1 gp120 core
gp120 core unusual fold
1rzk d1rzkg_ G:222-229,235-240,246-252,485-491
1yym d1yymg1 G:222-230,235-239,246-252,485-491
2i60 d2i60p1 P:222-229,235-240,246-252,485-491
1yyl d1yylg1 G:222-229,235-240,246-252,485-491
2i60 d2i60g1 G:222-229,235-240,246-252,485-491
1yyl d1yylp1 P:1222-1229,1235-1240,1246-1252,1485-1491
2i5y d2i5yg1 G:222-229,235-240,246-252,485-491
2i5y d2i5yp1 P:222-229,235-240,246-252,485-491
1yym d1yymp1 P:1222-1229,1235-1240,1246-1252,1485-1491
13. b.16.1 Ecotin, trypsin inhibitor
Ecotin, trypsin inhibitor sandwich; 8 strands in 2 sheets; complex topology with the crossing loops
1ecz d1eczb_ B:35-44,92-97,114-121,123-133
14. b.70.1 Quinoprotein alcohol dehydrogenase-like
8-bladed beta-propeller consists of eight 4-stranded beta-sheet motifs; meander ! also found in some members of the WD40-repeat superfamily
1flg d1flgb_ B:44-52,78-85,517-526,570-579
2ad6 d2ad6c1 C:40-48,73-80,494-504,562-571
2ad6 d2ad6a1 A:40-48,73-80,494-504,562-571
1flg d1flga_ A:44-52,78-85,516-526,570-579
1h4j d1h4je_ E:39-48,73-80,503-514,571-581
1h4j d1h4jc_ C:39-48,73-80,503-514,571-581
1h4j d1h4jg_ G:39-48,73-80,503-514,571-581
1h4j d1h4ja_ A:39-48,73-80,503-514,571-581
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 59 (enumeration index: query228) of S4
3rn0 F:45-52,81-86,344-352,377-382
3rn0 D:45-52,81-86,344-352,377-382
2icf A:2-10,82-91,521-533,621-627
2h2u A:31-42,96-104,317-323,324-331
2hkm A:88-96,125-130,388-396,420-428
3gvk A:313-320,354-363,685-696,744-754
3gvk B:313-320,354-363,685-696,744-754
3gvk C:313-321,354-363,685-696,744-754
2oiz A:88-96,125-130,388-396,420-428
3p1l A:45-52,78-87,353-364,385-391
2i07 A:2-10,82-91,520-533,621-628
2iuq A:88-96,125-130,388-396,420-428
3prw A:44-52,79-87,353-364,385-392
2ojy A:88-96,125-130,388-396,420-428
1xez A:265-271,278-293,336-346,384-393
1xez A:205-212,238-262,310-325,384-393
2iup A:88-96,125-130,388-396,420-428
2uy9 A:48-52,62-69,298-308,307-315
2hr0 A:2-10,82-91,520-533,621-627
2bix A:46-57,136-142,440-450,482-489
2bix B:43-56,136-142,440-451,483-489
3dcd A:45-51,51-55,120-132,139-148
3dcd B:45-51,51-55,120-132,139-148
2qjv B:4-8,13-19,209-216,218-222
2qjv A:4-8,13-19,209-216,218-222
3ngb D:222-229,235-240,246-252,485-492
3ngb I:222-229,235-240,247-252,485-492
2i0t A:88-96,125-130,388-396,420-428
2agz B:88-96,125-130,388-396,420-428
2agz A:88-96,125-130,388-396,420-428
2agx A:88-96,125-130,388-396,420-428
2qk7 A:89-95,103-113,152-161,203-216
3ju4 A:313-321,354-363,685-696,744-754
2ok4 A:88-96,125-130,388-396,420-428
3ade A:326-335,391-399,564-574,602-610
2cis A:59-65,65-69,135-147,155-166
3esg A:3-9,21-30,151-156,155-164
3esg B:3-9,21-30,151-155,156-164
3rlm D:45-52,81-86,344-352,377-382
3rlm F:45-52,81-86,344-352,377-382
2hkr A:88-96,125-130,388-396,420-428
2q7q A:88-96,125-130,388-396,420-428
2q7q B:88-96,125-130,388-396,420-428
2xwj C:2-10,82-91,521-533,621-627
2xwj G:2-10,82-91,521-533,621-628
2xwj A:2-10,82-91,521-533,621-627
3cfs B:30-39,76-87,364-370,396-404
2biw B:47-56,136-142,440-451,483-489
2biw C:47-56,136-142,440-451,483-489
2biw D:47-56,136-142,440-451,483-489
2biw A:47-57,136-142,440-451,483-489
2ah1 A:88-96,125-130,388-396,420-428
2agy A:88-96,125-130,388-396,420-428
3pxw D:45-52,81-86,344-352,377-382
3pxw F:45-52,81-86,344-352,377-382
2w8b F:165-173,200-208,410-417,419-427
2w8b B:165-173,200-208,410-417,419-427
2w8b A:165-173,200-208,410-417,419-427
2w8b D:165-173,200-208,410-417,419-427
3l3o A:2-10,82-91,521-533,621-628
3l3o D:2-10,82-91,521-533,621-628
2agw A:88-96,125-130,388-396,420-428
2qdr A:51-57,83-87,252-258,257-266
2qdr B:51-57,83-87,252-258,257-266
2cir A:59-65,65-69,135-147,155-166
2ah0 A:88-96,125-130,388-396,420-428
3cfv B:31-39,76-87,364-370,396-403
2v09 A:48-52,62-69,298-307,308-315
2a74 A:2-10,82-91,520-533,621-628
2a74 D:2-10,82-91,521-533,621-627
3nre A:45-52,52-56,125-136,144-153
3nre D:45-52,52-56,125-136,144-153
3nre B:45-52,52-56,125-136,144-153
3rpk B:78-86,100-105,126-131,136-144
3rpk A:78-86,100-105,126-131,136-144
2vqa C:54-58,68-75,308-317,316-325
2vqa B:54-58,68-75,308-317,316-325
2vqa A:54-58,68-75,308-317,316-325
3q7n A:44-52,79-87,353-364,385-392
3ett A:131-140,207-216,540-552,558-564
3ett B:131-140,207-216,540-552,558-564
2uzy D:44-48,68-76,475-483,508-516
2uzy B:44-48,68-76,475-483,508-516
3u7y G:222-229,235-240,246-252,485-492
2wyh A:554-568,574-579,660-670,673-683
2wyh B:554-568,574-579,660-670,673-683
2xn4 A:306-316,364-376,543-553,582-591
2xn4 B:306-316,364-376,543-553,582-591
2vov A:164-172,196-203,278-288,291-300
3q7o A:44-52,79-87,353-364,385-392
2vow A:164-172,196-203,278-288,291-300
2i0s A:88-96,125-130,388-396,420-428
2gh8 C:260-269,270-274,294-301,315-324
3dsm A:15-24,58-67,316-326,326-336
2uyb A:48-52,62-69,298-308,307-315
2wii A:2-10,82-91,520-533,621-627
3hs0 F:1-9,80-89,507-518,603-609
3hs0 A:1-9,80-89,507-518,603-609
2iaa D:45-53,82-87,345-353,377-385
2p17 A:6-13,21-28,205-210,211-217
2ice D:2-10,82-91,521-533,621-627
2ice A:2-10,82-91,521-533,621-628
3nvc A:55-60,84-88,316-324,323-331
3l4o D:45-52,81-86,344-352,377-382
3l4o F:45-52,81-86,344-352,377-382
3ets B:131-140,207-216,540-552,558-564
3ets A:131-140,207-216,540-552,558-564
2ok6 A:88-96,125-130,388-396,420-428
2ea7 C:23-27,39-46,318-330,329-338
2ea7 A:23-27,39-46,316-329,330-338
2ea7 B:23-27,39-46,318-329,330-337
2hj4 B:88-96,125-130,388-396,420-428
2hj4 A:88-96,125-130,388-396,420-428
3acl A:4-13,22-28,207-215,214-221
3l5n A:2-10,82-91,521-533,621-627
2i0r A:88-96,125-130,388-396,420-428
2hjb B:88-96,125-130,388-396,420-428
2hjb A:88-96,125-130,388-396,420-428
2eaa C:22-26,38-45,318-329,328-337
2eaa A:22-26,38-45,318-328,329-337
2eaa B:22-26,38-45,318-328,329-337
2hxc A:88-96,125-130,388-396,420-428
2uya A:48-52,62-69,298-308,307-315
3t4a D:2-10,82-91,520-533,621-627
3t4a A:2-10,82-91,520-533,621-627
2y1v B:78-86,100-105,126-131,136-144
2y1v A:78-86,100-105,126-131,137-144
2qki D:2-10,82-91,521-533,621-627
2qki A:2-10,82-91,521-533,621-628
3q7m A:44-52,79-87,353-364,385-392
3ohx A:2-10,82-91,521-533,621-628
3ohx D:2-10,82-91,521-533,621-628
3g6j C:2-10,82-91,520-533,621-627
2vox A:164-172,196-203,278-288,291-300
3pxt F:45-52,81-86,344-352,377-382
3pxt D:45-52,81-86,344-352,377-382
3orv D:45-52,81-86,344-352,377-382
3orv F:45-52,81-86,344-352,377-382
3rmz F:45-52,81-86,344-352,377-382
3rmz D:45-52,81-86,344-352,377-382
3gvj A:313-320,354-363,685-696,744-754
3c75 J:85-92,121-126,382-391,416-421
3c75 H:85-92,121-126,382-391,416-421
3hrz A:1-9,80-89,507-518,603-609
2iur A:88-96,125-130,388-396,420-428
2be1 A:121-129,294-306,341-351,353-366
2be1 B:121-129,294-306,341-351,353-366
2iuv B:88-96,125-130,388-396,420-428
2iuv A:88-96,125-130,388-396,420-428
3gvl A:313-321,354-363,685-696,744-754
3fm0 A:4-13,38-47,291-300,326-334
2agl A:88-96,125-130,388-396,420-428
3hi1 G:222-230,235-239,246-253,485-491
3hi1 J:222-230,235-239,246-253,485-491
3os7 D:72-78,103-108,161-173,180-189
2h0v A:14-20,30-38,256-262,263-271
2h0v B:14-20,30-38,256-262,263-271
2wyi B:554-568,574-579,660-670,673-683
2uy8 A:48-52,62-69,298-308,307-315
3elq B:131-140,207-216,540-552,558-564
3elq A:131-140,207-216,540-552,558-564
3s7i A:175-179,190-196,494-507,506-514
3s7i B:175-179,190-196,495-507,506-514
3l4m F:45-52,81-86,344-352,377-382
3l4m D:45-52,81-86,344-352,377-382
2pn5 A:1-7,75-82,479-490,569-575
3pvm D:23-31,102-110,529-540,625-631
3pvm B:23-31,102-110,529-540,625-631
3o14 A:9-15,27-34,179-185,184-193
3o14 B:9-15,27-34,179-185,184-193
3pxs F:45-52,81-86,344-352,377-382
3pxs D:45-52,81-86,344-352,377-382
2ciq A:59-65,65-69,135-147,155-166
3frp A:1-9,80-89,507-518,603-609
3nms A:2-10,82-91,521-533,621-628
3ii7 A:291-299,350-358,528-538,569-577
3prx C:21-29,100-109,552-563,650-655
3prx A:21-29,100-109,551-563,650-655
3prx D:23-31,102-110,529-540,625-631
3prx B:23-31,102-110,529-540,625-631
2win G:2-10,82-91,521-533,621-628
2win A:2-10,82-91,521-533,621-627
2win C:2-10,82-91,521-533,621-628
2win E:2-10,82-91,521-533,621-627
3roh A:118-125,133-143,182-191,235-248