1. c.26.2 Adenine nucleotide alpha hydrolases-like share similar mode of ligand (Adenosine group) binding ! can be subdivided into two group with closer relationships within each group than between the groups; the first three families form one group whereas the last two families form the other group !
Adenine nucleotide alpha hydrolase-like core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
1o96 d1o96c_ C:36-53,114-120,145-151,156-164
1o96 d1o96a_ A:36-53,114-120,145-151,156-164
1o96 d1o96e_ E:36-53,114-120,145-151,156-165
3clu d3cluc1 C:36-54,114-120,145-151,156-164
3cls d3clsc1 C:36-54,114-120,145-151,156-164
3clr d3clrc1 C:36-54,114-120,145-151,156-164
1o97 d1o97c_ C:36-54,114-120,145-151,156-164
3clt d3cltc1 C:36-54,114-120,145-151,156-164
1o96 d1o96q_ Q:36-54,114-120,145-151,156-165
1o94 d1o94c_ C:36-54,114-120,145-151,156-165
1o94 d1o94e_ E:36-54,114-120,145-151,156-165
1o95 d1o95c_ C:36-54,114-120,145-151,156-165
1o95 d1o95e_ E:36-54,114-120,145-151,156-165
1efp d1efpb_ B:36-53,115-121,149-154,155-164
1efp d1efpd_ D:36-53,115-121,149-154,155-164
1efv d1efvb_ B:39-56,118-124,152-157,158-167
2a1u d2a1ub1 B:39-56,118-124,152-157,158-167
1t9g d1t9gs_ S:39-56,118-124,152-157,158-167
2a1t d2a1ts1 S:39-56,118-124,152-157,158-167
3clu d3clud1 D:15-29,89-95,118-125,126-135
1o94 d1o94d_ D:15-29,89-95,118-125,126-135
3cls d3clsd1 D:15-29,89-95,118-125,126-135
3clt d3cltd1 D:15-29,89-95,118-125,126-135
3clr d3clrd1 D:15-29,89-95,118-125,126-135
1o95 d1o95d_ D:15-29,89-95,117-125,126-135
1o97 d1o97d1 D:15-29,89-95,118-125,126-135
1o95 d1o95f_ F:15-29,89-95,117-125,126-135
1o96 d1o96f1 F:15-29,89-95,118-125,126-135
1o96 d1o96d1 D:15-29,89-95,118-125,126-135
1o96 d1o96z1 Z:15-29,89-95,118-125,126-135
1o94 d1o94f_ F:15-29,89-95,118-125,126-135
1o96 d1o96b1 B:15-29,89-95,118-125,126-135
2a1t d2a1tr1 R:34-48,131-136,136-140,142-149
2a1u d2a1ua1 A:34-48,131-136,136-140,142-149
1efv d1efva1 A:34-48,131-136,136-140,142-149
1t9g d1t9gr_ R:34-48,131-136,136-140,142-149
1efv d1efvb_ B:39-56,145-149,152-157,158-167
2a1u d2a1ub1 B:39-56,145-149,152-157,158-167
1efp d1efpc1 C:15-27,110-115,115-119,121-128
2. d.261.1 Hypothetical protein PH1602
Hypothetical protein PH1602 complex alpha+beta fold; contains a region of similarity to the ferredoxin-like fold
1uc2 d1uc2b_ B:42-53,58-64,66-70,71-75
1uc2 d1uc2a_ A:42-53,58-64,66-70,71-75
1uc2 d1uc2b_ B:31-42,58-64,66-70,71-75
1uc2 d1uc2a_ A:31-42,58-64,66-70,71-75
3. d.194.1 CNF1/YfiH-like putative cysteine hydrolases
CNF1/YfiH-like putative cysteine hydrolases 4 layers: alpha/beta/beta/alpha; mixed beta sheets
1xfj d1xfja_ A:11-18,19-26,114-123,124-133
1t8h d1t8ha_ A:17-24,23-29,125-134,135-144
4. c.23.16 Class I glutamine amidotransferase-like conserved positions of the oxyanion hole and catalytic nucleophile; different constituent families contain different additional structures !
Flavodoxin-like 3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
1fye d1fyea_ A:121-128,186-191,194-200,202-207
1fy2 d1fy2a_ A:121-128,186-191,194-200,201-207
1fye d1fyea_ A:121-128,152-157,194-200,202-207
1fy2 d1fy2a_ A:121-128,152-157,194-200,201-207
5. b.113.1 N-terminal domain of MutM-like DNA repair proteins
N-terminal domain of MutM-like DNA repair proteins pseudobarrel; capped on both ends by alpha-helices
1ee8 d1ee8a2 A:2-18,61-69,71-76,90-98
1ee8 d1ee8b2 B:2-18,61-69,71-76,90-98
2opf d2opfa2 A:2-18,61-67,72-79,97-104
1k3w d1k3wa2 A:2-18,61-67,72-79,97-104
2ea0 d2ea0a2 A:2-18,61-67,72-79,97-104
2oq4 d2oq4a2 A:2-18,61-67,72-79,97-104
1k3x d1k3xa2 A:2-18,61-67,72-79,97-104
1q3b d1q3ba2 A:2-18,61-67,72-79,97-104
1q3c d1q3ca2 A:2-18,61-67,72-79,97-104
6. f.4.3 Porins
Transmembrane beta-barrels not a true fold, gathers together transmembrane barrels of different (n,S)
2guf d2gufa1 A:41-49,51-56,105-114,122-131
1kmp d1kmpa_ A:119-128,129-133,188-197,209-217
1po3 d1po3a_ A:119-128,129-133,188-197,209-217
1nqf d1nqfa_ A:41-50,51-58,105-114,123-131
1po3 d1po3b_ B:119-128,129-133,188-197,209-217
7. b.40.3 TIMP-like
OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
2e2d d2e2dc1 C:1007-1015,1128-1133,1165-1170,1174-1179
1br9 d1br9a_ A:7-16,128-133,165-171,173-179
1uea d1uead_ D:117-127,143-148,163-169,173-179
1uea d1ueab_ B:118-127,143-148,163-169,173-179
1gxd d1gxdc_ C:7-16,128-133,165-171,173-179
1gxd d1gxdc_ C:120-129,144-149,165-171,173-179
2e2d d2e2dc1 C:1007-1015,1144-1149,1165-1170,1174-1179
1gxd d1gxdd_ D:7-15,129-133,165-171,173-179
1buv d1buvt_ T:1007-1016,1129-1133,1165-1170,1174-1179
1bqq d1bqqt_ T:1007-1016,1129-1133,1165-1170,1174-1179
2e2d d2e2dc1 C:1119-1129,1144-1149,1165-1170,1174-1179
1br9 d1br9a_ A:119-129,144-149,165-171,173-179
1br9 d1br9a_ A:7-16,144-149,165-171,173-179
1gxd d1gxdd_ D:7-15,145-149,165-171,173-179
1uea d1uead_ D:7-16,143-148,163-169,173-179
1uea d1ueab_ B:7-16,143-148,163-169,173-179
1gxd d1gxdc_ C:7-16,144-149,165-171,173-179
8. c.3.1 FAD/NAD(P)-binding domain
FAD/NAD(P)-binding domain core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander
1gv4 d1gv4a2 A:266-273,300-306,367-375,376-383
2gv8 d2gv8a2 A:184-195,197-201,261-266,267-273
2gv8 d2gv8b2 B:184-195,197-201,261-266,267-273
1vqw d1vqwb2 B:186-195,197-201,261-266,267-273
2gvc d2gvce2 E:186-195,197-201,261-266,267-273
2gvc d2gvca2 A:186-195,197-201,261-266,267-273
2gvc d2gvcd2 D:186-195,197-201,261-266,267-273
2gvc d2gvcb2 B:186-195,197-201,261-266,267-273
9. c.68.1 Nucleotide-diphospho-sugar transferases
Nucleotide-diphospho-sugar transferases 3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
1ss9 d1ss9a_ A:8-27,98-103,105-109,241-245
1ga8 d1ga8a_ A:8-27,98-103,105-109,241-245
1g9r d1g9ra_ A:8-27,98-103,105-109,241-245
1jv3 d1jv3b_ B:417-437,483-487,488-494,495-500
1vm8 d1vm8a_ A:417-437,500-504,506-511,512-517
1jvd d1jvdb_ B:417-437,500-504,506-511,512-517
1jvg d1jvgb_ B:417-437,500-504,505-511,512-517
1vm8 d1vm8b_ B:417-437,500-504,506-511,512-516
1zct d1zcta1 A:11-29,95-101,103-107,208-212
1zct d1zctb1 B:11-29,95-101,103-107,208-212
1ll0 d1ll0h_ H:11-29,95-101,103-107,208-212
1ll0 d1ll0i_ I:11-29,95-101,103-107,208-212
1ll0 d1ll0d_ D:11-29,95-101,103-107,208-212
1ll0 d1ll0e_ E:11-29,95-101,103-107,208-212
1ll0 d1ll0c_ C:11-29,95-101,103-107,208-212
1ll0 d1ll0j_ J:11-29,95-101,103-107,208-212
1ll0 d1ll0g_ G:11-29,95-101,103-107,208-212
1ll0 d1ll0a_ A:11-29,95-101,103-107,208-212
1ll0 d1ll0b_ B:11-29,95-101,103-107,208-212
1ll0 d1ll0f_ F:11-29,95-101,103-107,208-212
1ll3 d1ll3a_ A:11-29,95-101,103-107,208-212
1zcy d1zcya1 A:11-29,95-101,103-107,208-212
1zcv d1zcva1 A:11-29,95-101,103-107,208-212
1ll2 d1ll2a_ A:12-30,96-102,104-108,209-213
1zcu d1zcua1 A:11-29,95-101,103-107,208-212
1zdf d1zdfa1 A:11-29,95-101,103-107,208-212
1zdg d1zdga1 A:11-29,95-101,103-107,208-212
1vm8 d1vm8a_ A:417-437,437-442,506-511,512-517
1jvd d1jvda_ A:417-437,438-443,506-511,512-517
1jvg d1jvgb_ B:417-437,437-443,505-511,512-517
1jv3 d1jv3a_ A:417-437,438-443,488-494,495-500
1jv1 d1jv1a_ A:417-437,438-443,488-494,495-500
1jvg d1jvga_ A:417-437,438-443,506-511,512-517
1g0r d1g0rf_ F:34-47,102-109,110-115,221-226
1g3l d1g3ld_ D:34-47,102-109,110-115,221-226
1g3l d1g3lb_ B:34-47,102-109,110-115,221-226
1g3l d1g3lc_ C:34-47,102-109,110-115,221-226
1g3l d1g3la_ A:34-47,102-109,110-115,221-226
1g0r d1g0rb_ B:34-47,102-109,110-115,221-226
1g23 d1g23a_ A:34-47,102-109,110-115,221-226
1g23 d1g23h_ H:34-47,102-109,110-115,221-226
1fxo d1fxoh_ H:34-47,102-109,110-115,221-226
1fxo d1fxoc_ C:34-47,102-109,110-115,221-226
1fxo d1fxob_ B:34-47,102-109,110-115,221-226
1fxo d1fxog_ G:34-47,102-109,110-115,221-226
1fzw d1fzwh_ H:34-47,102-109,110-115,221-226
1iim d1iimb_ B:35-48,103-110,111-116,222-227
1g23 d1g23b_ B:34-47,102-109,110-115,221-226
1g1l d1g1la_ A:34-47,102-109,110-115,221-226
1fxo d1fxoa_ A:34-47,102-109,110-115,221-226
1g0r d1g0ra_ A:34-47,102-109,110-115,221-226
1fzw d1fzwa_ A:34-47,102-109,110-115,221-226
1g23 d1g23f_ F:34-47,102-109,110-115,221-226
1g0r d1g0rh_ H:34-47,102-109,110-115,221-226
1g0r d1g0rc_ C:34-47,102-109,110-115,221-226
1vm8 d1vm8b_ B:417-437,437-443,506-511,512-516
1fzw d1fzwb_ B:34-47,102-109,110-115,221-226
1fzw d1fzwf_ F:34-47,102-109,110-115,221-226
1g1l d1g1lc_ C:34-47,102-109,110-115,221-226
1g1l d1g1lf_ F:34-47,102-109,110-115,221-226
1mp3 d1mp3b_ B:35-48,103-110,111-116,222-227
1g1l d1g1lh_ H:34-47,102-109,110-115,221-226
1g1l d1g1lb_ B:34-47,102-109,110-115,221-226
1g0r d1g0rg_ G:34-47,102-109,110-115,221-226
1h5r d1h5ra_ A:35-48,103-110,111-116,222-227
1fzw d1fzwc_ C:34-47,102-109,110-115,221-226
10. b.82.1 RmlC-like cupins
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1yqc d1yqcb1 B:9-17,16-21,86-95,121-125
1xsr d1xsrb_ B:9-17,16-21,86-95,121-125
1yqc d1yqca1 A:9-17,16-21,86-95,121-125
1xsr d1xsra_ A:9-17,16-21,86-95,121-125
1xsq d1xsqa_ A:9-17,16-21,86-95,121-125
1xsq d1xsqb_ B:9-17,16-21,86-95,121-125
1vr3 d1vr3a1 A:27-35,35-41,100-110,130-137
2bdr d2bdra1 A:10-18,18-22,88-97,123-127
11. b.71.1 Glycosyl hydrolase domain this domain is C-terminal to the catalytic beta/alpha barrel domain !
Glycosyl hydrolase domain folded sheet; greek-key
1tmq d1tmqa1 A:364-378,421-426,429-434,435-439
1clv d1clva1 A:364-378,421-426,429-434,435-439
1jae d1jaea1 A:364-378,421-426,430-434,435-439
1viw d1viwa1 A:364-378,420-426,430-434,435-439
12. c.91.1 PEP carboxykinase-like
PEP carboxykinase-like contains a P-loop NTP-binding motif; mixed beta-sheet folds into a barrel-like structure with helices packed on one side
2pc9 d2pc9b1 B:237-244,247-253,253-259,260-265
1ii2 d1ii2b1 B:226-233,236-242,242-248,249-254
1ii2 d1ii2a1 A:226-233,236-242,242-248,249-254
1os1 d1os1a1 A:253-260,263-269,269-275,276-281
1aq2 d1aq2a1 A:253-260,263-269,269-275,276-281
2py7 d2py7x1 X:253-260,263-269,269-275,276-281
2olq d2olqa1 A:253-260,263-269,269-275,276-281
1k3c d1k3ca1 A:253-260,263-269,269-275,276-281
2pxz d2pxzx1 X:253-260,263-269,269-275,276-281
1k3d d1k3da1 A:253-260,263-269,269-275,276-281
2olr d2olra1 A:253-260,263-269,269-275,276-281
1ayl d1ayla1 A:253-260,263-269,269-275,276-281
1khe d1khea1 A:289-296,302-311,311-319,321-327
13. b.84.2 Rudiment single hybrid motif
Barrel-sandwich hybrid sandwich of half-barrel shaped beta-sheets
1vkz d1vkzb1 B:12-26,343-347,348-353,354-359
1vkz d1vkza1 A:12-26,343-347,348-353,354-359
1gso d1gsoa1 A:34-41,361-367,368-372,376-380
1gso d1gsoa1 A:9-23,361-367,368-372,376-380
14. e.3.1 beta-lactamase/transpeptidase-like
beta-lactamase/transpeptidase-like contains a cluster of helices and an alpha+beta sandwich
1u60 d1u60d_ D:201-215,216-220,263-271,273-281
1u60 d1u60b_ B:201-215,216-220,263-271,273-281
1u60 d1u60c_ C:201-215,216-220,263-271,273-281
1u60 d1u60a_ A:201-215,216-220,263-271,273-281
2ex8 d2ex8a1 A:152-159,172-181,220-225,227-237
2exb d2exba1 A:152-159,172-181,220-225,227-237
2ex9 d2ex9a1 A:152-159,172-181,220-225,227-237
2ex6 d2ex6a1 A:152-159,172-181,220-225,227-237
2exa d2exaa1 A:152-159,172-181,220-225,227-237
2ex2 d2ex2a1 A:152-159,172-181,220-225,227-237
15. c.143.1 CofD-like
CofD-like 3 layers: a/b/a, parallel beta-sheet of 7 strands, order 3214567; topological similarity to the CobT-like fold (scop_cf 52732)
2hzb d2hzbb1 B:257-268,268-272,292-296,297-301
2hzb d2hzba1 A:257-268,268-272,292-296,297-301
2hzb d2hzbc1 C:257-268,268-272,291-296,297-302
2hzb d2hzbd1 D:257-268,268-272,291-296,297-302
16. e.48.1 Major capsid protein VP5
Major capsid protein VP5 large protein without apparent domain division
1no7 d1no7a_ A:497-510,824-831,905-913,927-935
1no7 d1no7b_ B:497-510,825-831,905-913,927-935
17. b.1.4 beta-Galactosidase/glucuronidase domain
Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
2vzs d2vzsa2 A:663-674,831-843,851-855,864-874
2vjx d2vjxb2 B:666-677,811-817,822-826,834-843
2je8 d2je8b2 B:666-677,811-817,822-826,834-843
2vqu d2vqub3 B:666-677,811-817,822-826,834-843
2je8 d2je8a2 A:666-677,811-817,822-826,834-843
2vl4 d2vl4b2 B:666-677,811-817,822-826,834-843
2vr4 d2vr4b2 B:666-677,811-817,822-826,834-843
2vqt d2vqtb2 B:666-677,811-817,822-826,834-843
2vot d2votb2 B:666-677,811-817,822-826,834-843
2vot d2vota2 A:666-677,811-817,822-826,834-843
2vmf d2vmfa2 A:666-677,811-817,822-826,834-843
2vo5 d2vo5a2 A:666-677,811-817,822-826,834-843
2vo5 d2vo5b2 B:666-677,811-817,822-826,834-843
2vmf d2vmfb2 B:666-677,812-817,822-826,834-843
2vqu d2vqua3 A:666-677,812-817,822-826,834-843
2vl4 d2vl4a2 A:666-677,812-817,822-826,834-843
2vqt d2vqta2 A:666-677,812-817,822-826,834-843
2vr4 d2vr4a2 A:666-677,812-817,822-826,834-843
2vjx d2vjxa2 A:666-677,812-817,822-826,834-843
18. b.144.1 Trimeric adhesin
Trimeric adhesin trimer; contains two different beta-prism-like domains connected by an linker subdomain of less regular structure
1s7m d1s7mc_ C:609-619,622-626,654-662,667-674
1s7m d1s7mf_ F:609-619,622-626,654-662,667-674
1s7m d1s7me_ E:609-619,622-626,654-662,667-674
1s7m d1s7md_ D:609-618,622-626,654-662,667-674
1s7m d1s7ma_ A:609-618,622-626,654-662,667-674
1s7m d1s7mb_ B:609-619,622-626,654-662,667-674
19. d.152.1 Aldehyde ferredoxin oxidoreductase, N-terminal domain
Aldehyde ferredoxin oxidoreductase, N-terminal domain contains sandwich; duplication of alpha+beta motif with single mixed sheet ! motif: beta(2)-alpha-beta(3)-alpha-beta; strand order 216345, strands 1 and 6 are parallel
1b4n d1b4nd2 D:95-105,107-114,118-125,126-133
1aor d1aorb2 B:96-106,107-115,119-126,127-134
1b25 d1b25b2 B:95-105,107-114,118-125,126-133
1b25 d1b25a2 A:95-105,107-114,118-125,126-133
1b4n d1b4nb2 B:95-105,107-114,118-125,126-133
1aor d1aora2 A:96-106,107-115,119-126,127-134
20. e.62.1 Heme iron utilization protein-like
Heme iron utilization protein-like 2 domains; d1 - 3-helical bundle similar to the homeodomain-like fold; d2 - 6-stranded beta-barrel capped by two helices at one end, similar topology to the PH-like fold
2hq2 d2hq2a1 A:222-237,273-279,284-294,295-306
2j0r d2j0ra1 A:225-240,276-283,287-297,298-309
1u9t d1u9ta1 A:222-237,273-280,283-294,295-306
2j0p d2j0pa1 A:225-240,276-283,287-297,298-309
21. c.47.1 Thioredoxin-like
Thioredoxin fold core: 3 layers, a/b/a; mixed beta-sheet of 4 strands, order 4312; strand 3 is antiparallel to the rest
1qxh d1qxhb_ B:111-119,119-123,132-140,142-150
1xvw d1xvwb1 B:98-105,105-110,115-123,125-133
1zye d1zyel1 L:105-112,113-117,122-130,132-141
1zye d1zyek1 K:105-112,113-117,122-130,132-141
1zye d1zyeb1 B:105-112,113-117,122-130,132-141
1zye d1zyef1 F:105-112,113-117,122-130,132-141
1zye d1zyea1 A:105-112,113-117,122-130,132-141
1zye d1zyed1 D:105-112,113-117,122-130,132-141
1we0 d1we0e1 E:102-109,110-114,119-127,130-138
1we0 d1we0h1 H:102-109,110-114,119-127,130-138
22. d.256.1 Ta1353-like
Ta1353-like core: beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel beta-sheet of 5 strands; order: 51423;
1vgg d1vgga_ A:62-77,79-87,115-124,125-135
1vgg d1vggf_ F:62-77,79-87,115-124,125-135
1vgg d1vggd_ D:62-77,79-87,115-124,125-135
1vgg d1vgge_ E:62-77,79-87,115-124,125-135
1vgg d1vggb_ B:62-77,79-87,115-124,125-135
1vgg d1vggc_ C:62-77,79-87,115-124,125-135
1rlh d1rlha_ A:55-70,72-81,107-116,117-127
23. i.6.1 Viruses and virus-receptor complexes
Viruses and virus-receptor complexes
1qgc d1qgc4_ 4:125-132,133-144,359-369,398-410
24. b.82.2 Clavaminate synthase-like Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold !
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1wa6 d1wa6x1 X:14-32,32-38,194-200,233-237
1w9y d1w9ya1 A:14-32,32-38,194-200,232-237
25. b.3.4 Transthyretin (synonym: prealbumin)
Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
1tfp d1tfpa_ A:75-83,88-98,104-113,114-123
26. c.23.12 Formate/glycerate dehydrogenase catalytic domain-like
Flavodoxin-like 3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
1u28 d1u28a2 A:19-30,31-37,346-350,351-355
27. d.58.1 4Fe-4S ferredoxins
Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
1y5l d1y5lb1 B:190-197,200-206,232-236,239-243
1siw d1siwb_ B:190-197,200-206,232-236,239-243
1y5i d1y5ib1 B:190-197,200-206,232-236,239-243
1r27 d1r27d_ D:190-197,200-206,232-236,239-243
1r27 d1r27b_ B:190-197,200-206,232-236,239-243
28. d.169.1 C-type lectin-like
C-type lectin-like unusual fold
1hyr d1hyrb_ B:119-131,156-162,189-194,196-201
1g1r d1g1rb1 B:11-24,52-57,90-94,102-107
1g1q d1g1qd1 D:11-24,52-57,90-96,101-107
1g1r d1g1rd1 D:11-24,52-57,90-96,101-107
29. d.104.1 Class II aaRS and biotin synthetases
Class II aaRS and biotin synthetases contains large mixed beta-sheet
1x2h d1x2hc2 C:12-28,73-81,82-92,144-154
2p5i d2p5ia1 A:28-46,95-101,102-112,173-183
30. b.124.1 HesB-like domain
HesB-like domain barrel, closed; n=7, S=10; complex topology
1s98 d1s98a_ A:6-21,24-34,74-81,86-92
31. c.61.1 PRTase-like
PRTase-like core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 321456; strand 3 is antiparallel to the rest
1w30 d1w30b_ B:56-75,149-154,174-181,185-193
2igb d2igba1 A:39-58,134-139,159-166,170-178
1non d1nona_ A:39-58,134-139,159-166,170-178
2igb d2igbb1 B:39-58,134-139,159-166,170-178
1xz8 d1xz8b1 B:39-58,134-139,159-166,170-178
1ufr d1ufrc_ C:40-59,133-138,157-165,169-178
1ufr d1ufrd_ D:40-59,133-138,157-165,169-178
1ufr d1ufrb_ B:40-59,133-138,157-165,169-178
1ufr d1ufra_ A:40-59,133-138,157-165,169-178
1ufr d1ufrd_ D:40-59,104-108,157-165,169-178
1ufr d1ufrb_ B:40-59,104-108,157-165,169-178
1ufr d1ufrc_ C:40-59,104-108,157-165,169-178
1ufr d1ufra_ A:40-59,104-108,157-165,169-178
32. d.142.1 Glutathione synthetase ATP-binding domain-like
ATP-grasp Consists of two subdomains with different alpha+beta folds ! shares functional and structural similarities with the PIPK and protein kinase superfamilies
1euc d1eucb2 B:4-16,21-26,199-212,214-220
2fpp d2fppb2 B:4-16,21-26,199-212,214-220
1eud d1eudb2 B:4-16,21-26,199-212,214-220
33. d.17.4 NTF2-like has a beta-alpha(2)-beta insertion after the main helix !
Cystatin-like Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet
1mwu d1mwub1 B:58-74,105-120,139-146,292-304
34. c.52.4 TBP-interacting protein-like contains extra C-terminal alpha+beta domain of complex fold with an embeded C2H2 zinc-finger
Restriction endonuclease-like core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest
2czr d2czra1 A:85-101,112-122,140-150,180-187
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 164 (enumeration index: query25) of S4
2ffu A:148-164,219-224,226-230,356-360
2wbk A:666-677,812-817,822-826,834-843
2wbk B:666-677,811-817,822-826,834-843
3eeb B:41-56,133-140,174-179,181-188
3eeb A:41-56,133-140,174-179,181-188
2vzo A:663-674,831-843,851-855,864-874
3e0r B:17-30,49-57,70-79,147-157
2ys7 A:34-42,356-361,362-367,368-373
2epg B:28-39,57-63,65-69,70-74
2epg B:40-52,57-63,65-69,70-74
2epg A:28-39,57-63,65-69,70-74
2epg A:40-52,57-63,65-69,70-74
2gak A:132-144,210-218,219-223,397-401
2gak B:132-144,211-218,219-223,397-401
3rmv A:12-30,96-102,104-108,209-213
2yya B:34-41,357-363,364-369,370-375
2yya B:9-23,357-363,364-369,370-375
3s61 A:175-182,208-214,316-326,327-337
3s61 B:175-182,186-190,316-326,327-337
3s61 A:175-182,186-190,316-326,327-337
3lvt A:300-330,818-822,825-835,838-847
3u2u A:12-30,96-102,104-108,209-213
3u2u B:12-30,96-102,104-108,209-213
3lf7 A:197-207,261-272,340-344,351-362
3ic9 A:148-155,172-179,233-241,242-251
3ic9 B:148-155,172-178,233-241,242-251
3ic9 C:148-155,172-178,233-241,242-251
3ic9 D:148-155,172-178,233-241,242-251
3t7m A:12-30,96-102,104-108,209-213
3t7m B:12-30,96-102,104-108,209-213
3qvb A:12-30,96-102,104-108,209-213
2zus B:673-689,696-701,703-710,713-720
3lia A:83-99,125-130,132-138,143-147
3lia B:83-99,125-130,132-138,143-147
2ovi B:43-58,94-100,105-115,116-127
2ovi A:43-58,94-100,105-115,116-127
2ovi D:46-58,94-100,105-115,116-127
2ovi C:43-58,94-100,105-115,116-127
2zuu A:673-689,696-701,703-709,712-720
2zuu D:673-689,696-701,703-711,712-720
2zuu C:673-689,696-701,703-709,712-720
2zuu B:673-689,696-701,703-710,713-720
2xd4 A:34-42,355-361,362-367,368-373
2xd4 A:9-23,355-361,362-367,368-373
3o0e C:103-115,129-134,209-223,224-236
3o0e A:103-115,117-121,252-266,268-282
3o0e A:103-115,117-121,209-223,224-236
3o0e F:103-115,129-134,209-223,224-236
3o0e B:103-115,129-134,209-223,224-236
3o0e E:103-115,129-134,209-223,224-236
2p72 A:17-35,72-78,80-84,190-194
2p72 B:17-35,72-78,80-84,190-194
3na2 C:4-20,56-63,67-76,80-90
3na2 D:3-20,56-63,67-77,79-90
3na2 A:3-20,56-63,67-77,79-90
3na2 B:3-20,56-63,67-75,81-90
3hvs A:111-119,119-123,132-140,142-150
3hvs B:111-119,119-123,132-140,142-150
3s5w B:175-182,208-214,316-326,327-337
3s5w A:175-182,186-190,316-326,327-337
3s5w B:175-182,186-190,316-326,327-337
3ih9 B:200-214,215-219,262-269,272-280
3ih9 A:200-214,215-219,262-269,272-280
2vpx F:64-71,74-79,105-109,111-115
3lbb A:43-63,63-69,81-95,97-108
3lbb B:43-63,63-69,83-95,97-108
2vzu B:663-674,832-843,851-855,864-874
3u2w B:12-30,96-102,104-108,209-213
3u2w A:12-30,96-102,104-108,209-213
2ip4 B:34-41,350-356,357-362,363-368
2ip4 A:34-41,350-356,357-362,363-368
3ddr B:138-146,148-152,202-212,222-231
3ddr A:138-146,148-152,202-212,222-231
3hvv A:111-119,119-123,132-140,142-150
3iha B:200-214,215-219,262-269,272-280
3iha A:200-214,215-219,262-269,272-280
2k4z A:5-19,24-34,73-80,86-92
3mjf A:34-41,361-368,368-373,375-380
3mjf A:9-23,361-368,368-373,375-380
3age B:200-214,215-219,262-270,272-280
3age A:200-214,215-219,262-269,272-280
2jb7 C:67-82,85-93,119-127,131-140
2jb7 A:67-82,85-93,119-127,131-140
2jb7 B:67-82,85-93,119-127,131-140
2d16 D:63-78,80-89,115-124,125-135
3nsn A:95-117,127-137,185-191,192-200
2d7r A:157-173,231-237,239-243,367-371
3pee B:44-59,146-155,200-205,207-214
3pee A:44-59,146-155,200-205,207-214
2j3n E:170-177,192-197,254-262,264-274
1zx9 A:155-162,177-183,238-246,247-254
2qlt A:114-128,131-137,241-250,251-260
2ph0 B:47-59,95-102,106-116,117-128
2ph0 A:44-59,95-101,105-116,117-128
3ih5 B:15-33,90-96,120-131,138-147
3ih5 C:15-33,90-96,120-131,138-147
3ih5 D:15-33,90-96,120-130,138-146
3ih5 A:15-33,90-96,120-131,138-146
2vxm A:143-155,219-225,227-231,347-351
2qgo A:9-20,24-31,86-94,95-102
3if5 A:200-214,215-219,262-270,272-280
2p73 A:17-35,72-78,80-84,190-194
3ogv A:376-393,499-507,577-583,600-606
3u2t A:12-30,96-102,104-108,209-213
3lig A:197-207,261-272,340-344,351-362
3pov A:273-285,303-307,339-346,432-442
3agd B:200-214,215-219,262-270,272-280
3agd A:200-214,215-219,262-269,272-280
3ldr A:197-207,261-272,340-344,351-362
3nsm A:95-117,127-137,185-191,192-200
2qqp C:169-183,192-197,289-298,321-328
2qqp E:169-183,192-198,289-298,321-328
3i43 A:111-119,119-123,132-140,142-150
3i43 B:111-119,119-123,132-140,142-150
3fou A:114-121,124-130,179-184,185-190
3fet D:9-21,68-74,99-104,105-114
3lih A:197-207,261-273,340-344,351-362
2ffv B:148-164,219-223,226-230,356-360
2ffv A:148-164,219-223,226-230,356-360
3rmw A:12-30,96-102,104-108,209-213
2x60 B:35-48,102-108,109-113,257-261
2d7i A:157-173,231-237,239-243,367-371
3hvx C:111-119,119-124,132-140,142-150
3hvx B:111-119,119-123,132-140,142-150
3hvx A:111-119,119-123,132-140,142-150
3hvx D:111-119,119-123,132-140,142-150
3lem A:197-207,261-272,340-344,351-362
3hw9 A:103-115,130-135,169-183,184-196
2vzv A:663-674,832-843,851-855,864-874
3q4s A:12-30,96-102,104-108,209-213
3lfi A:197-207,261-272,340-344,351-362
3lfi B:197-206,261-272,340-344,351-362
2q7d B:105-121,129-135,276-287,288-299
2q7d A:105-121,129-135,276-287,288-299
1ytm B:1200-1220,1221-1225,1225-1231,1236-1242
1ytm A:247-254,256-263,263-269,270-275
1ytm B:1247-1254,1257-1263,1263-1269,1270-1275
2vzt A:663-674,831-843,851-855,864-874
2x8c A:266-273,287-293,350-361,362-375
2x8c B:266-273,288-293,350-361,362-375
3ean A:170-177,192-197,254-262,264-274
2yw2 A:9-23,357-363,364-369,370-375
2yw2 B:9-23,357-363,364-369,370-375
3ovu B:89-97,155-164,170-178,180-190
2xcl A:9-22,355-361,362-367,368-373
2xcl A:34-42,355-361,362-367,368-373
3ozp A:97-117,127-137,185-191,192-200
1z0v B:511-524,530-534,535-539,541-545
1z0v E:511-524,530-534,535-539,541-545
2qk4 B:11-25,365-370,371-376,377-382
2qk4 A:11-25,365-370,371-376,377-382
2o2z C:257-268,268-272,291-296,297-302
2o2z A:257-268,268-272,291-295,298-302
2o2z D:257-268,268-272,291-295,298-302
3fhd A:273-285,303-307,339-346,432-442
2gl0 C:67-82,85-93,119-127,131-140
2gl0 A:67-82,85-93,119-127,131-140
2gl0 D:67-82,85-93,119-127,131-140
2gl0 F:67-82,85-93,119-127,131-140
2gl0 E:67-82,84-93,119-127,131-140
2gl0 B:67-82,85-93,119-127,131-140
3hwb A:103-115,130-135,169-183,184-196
2yrw A:34-42,356-361,362-367,368-373
3on7 B:10-25,25-31,189-195,229-234
3on7 D:10-25,25-31,189-195,229-234
3on7 A:10-25,25-31,189-195,229-234
3on7 C:12-25,25-31,189-195,229-234
3li8 A:83-99,125-130,132-138,143-147
3fzy A:3469-3484,3561-3568,3602-3607,3609-3616
3fzy B:3469-3484,3561-3568,3602-3607,3609-3616
2odt X:105-121,129-135,276-287,288-299
2ivf B:157-164,167-173,199-203,206-210
3ihb B:200-214,215-219,262-269,272-280
3ihb A:200-214,215-219,262-269,272-280
2qb5 B:105-121,129-135,276-287,288-299
2qb5 A:105-121,129-135,276-287,288-299
3t7o A:12-30,96-102,104-108,209-213
3t7o B:12-30,96-102,104-108,209-213
3lfm A:35-47,48-54,268-276,305-313
3gcd D:41-56,133-140,174-179,181-187
3gcd C:41-56,133-140,174-179,181-188
3gcd A:41-56,133-140,174-179,181-188
1wvq C:67-82,85-93,119-127,131-140
1wvq A:67-82,85-93,119-127,131-140
1wvq B:67-82,85-93,119-127,131-140
3ozo A:97-117,127-137,185-191,192-200
3ogr A:376-393,499-507,577-583,600-606
3ir6 B:190-197,200-206,232-236,239-243
3otk A:132-144,211-218,219-223,397-401
3otk D:132-144,210-218,219-223,397-401
3otk C:132-144,210-218,219-223,397-401
3otk B:132-144,210-218,219-223,397-401
2gam B:132-144,211-218,219-223,397-401
2gam A:132-144,210-218,219-223,397-401
2gam C:132-144,211-218,219-223,397-401
2gam D:132-144,211-218,219-223,397-401
2l2f A:2-9,8-15,96-101,102-107
2l2f A:2-9,29-37,96-101,102-107
2ys6 A:9-22,356-361,362-367,368-373
2ys6 A:34-42,356-361,362-367,368-373
3u2x A:12-30,96-102,104-108,209-213
3u2x B:12-30,96-102,104-108,209-213
2ekm B:64-79,81-90,116-125,126-136
2ekm C:64-79,82-90,116-125,126-136
2ekm A:64-79,81-90,116-125,126-136
3ogs A:376-393,499-507,577-583,600-606
3l4e A:120-127,155-160,189-196,197-204
3fm2 B:4-16,55-62,65-75,80-90
3fm2 A:4-16,55-62,65-77,78-90
3ih8 A:200-214,215-219,262-270,272-280
3ih8 B:200-214,215-219,262-269,272-280
2zuw D:673-689,696-701,703-710,713-720
2zuw A:673-689,696-701,703-710,713-720
2zuw C:673-689,696-701,703-709,712-720
2zuw B:673-689,696-701,703-710,713-720
2yrx A:34-42,356-361,362-367,368-374
3keb B:115-122,122-127,135-143,145-153
3keb C:115-122,122-127,135-143,145-153
2zut D:673-689,696-701,703-710,713-720
2zut A:673-689,696-701,703-710,713-720
2zut B:673-689,696-701,703-710,713-720
2zut C:673-689,696-701,703-709,712-720
2x36 C:856-870,876-880,881-885,887-891
2x36 F:852-870,876-880,881-885,887-891
3og2 A:376-393,499-507,577-583,600-606
2d2a A:21-36,38-49,89-98,99-108
2x5z B:35-48,102-108,109-113,257-261
2zuv A:673-689,696-701,703-711,712-720
3t7n B:12-30,96-102,104-108,209-213
3t7n A:12-30,96-102,104-108,209-213
2p6w A:17-35,72-78,80-84,190-194
1xc6 A:377-394,502-510,575-580,599-604
1tg7 A:377-394,502-510,575-580,599-604
3cmm A:359-380,387-393,894-902,903-911
3cmm C:359-380,387-393,895-902,903-911