1. d.89.1 Origin of replication-binding domain, RBD-like Origin of replication-binding domain, RBD-like alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325 2ntc d2ntcb1 B:164-180,181-190,191-199,228-239 2ipr d2ipra1 A:164-180,181-190,191-199,228-239 2ipr d2iprb1 B:164-180,181-190,191-199,228-239 2ntc d2ntca1 A:164-180,181-190,191-199,228-239 2if9 d2if9a1 A:164-180,181-190,191-199,228-239 2itl d2itla1 A:164-180,181-190,191-199,228-239 2fuf d2fufa1 A:164-180,181-190,191-199,228-239 2itl d2itlb1 B:164-180,181-190,191-199,228-239 2if9 d2if9b1 B:164-180,181-190,191-199,228-239 2itj d2itja1 A:164-180,180-190,191-200,228-239 1tbd d1tbda_ A:36-52,52-62,63-72,100-111 2tbd d2tbda_ A:36-52,53-62,63-71,100-111 2itj d2itjb1 B:171-180,181-190,191-199,228-239 1z1d d1z1db1 B:36-52,53-62,63-71,100-110 1m55 d1m55b_ B:49-72,76-85,86-96,146-157 1m55 d1m55a_ A:49-72,76-85,86-96,146-157 1uut d1uuta_ A:49-72,76-85,86-96,146-157 1rz9 d1rz9e_ E:49-72,76-85,86-96,146-158 1rz9 d1rz9a_ A:49-72,76-85,86-96,146-158 1rz9 d1rz9b_ B:49-72,76-85,86-96,146-158 1rz9 d1rz9d_ D:49-72,76-85,86-96,146-158 1rz9 d1rz9c_ C:49-72,76-85,86-96,146-158 1uut d1uutb_ B:49-72,76-85,86-96,146-157 1l5i d1l5ia_ A:24-36,39-52,54-66,96-107 1l2m d1l2ma_ A:24-36,39-52,54-66,97-107 2. d.218.1 Nucleotidyltransferase Nucleotidyltransferase core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123 2bpc d2bpca2 A:151-171,173-178,190-197,261-274 7icf d7icfa4 A:151-171,173-178,190-197,261-274 1kej d1keja4 A:304-324,326-331,343-350,439-452 1jms d1jmsa4 A:304-324,326-331,343-350,439-452 1tv9 d1tv9a3 A:151-171,173-178,190-197,261-274 1zjm d1zjma3 A:151-171,173-178,190-197,261-274 1rpl d1rpla2 A:151-171,173-178,190-197,261-274 9ics d9icsa4 A:151-171,173-178,190-197,261-274 1bpb d1bpba2 A:151-171,173-178,190-197,261-274 1zqz d1zqza2 A:151-171,173-178,190-197,261-274 1zqx d1zqxa2 A:151-171,173-178,190-197,261-274 1zqy d1zqya2 A:151-171,173-178,190-197,261-274 1kdh d1kdha4 A:304-324,326-331,343-350,439-452 1tva d1tvaa3 A:151-171,173-178,190-197,261-274 2p66 d2p66a3 A:151-171,173-178,190-197,261-274 1zqw d1zqwa2 A:151-171,173-178,190-197,261-274 2i9g d2i9ga3 A:151-171,173-178,190-197,261-274 1nom d1noma2 A:151-171,173-178,190-197,261-274 1zqu d1zqua2 A:151-171,173-178,190-197,261-274 2van d2vana2 A:151-171,173-178,190-197,261-274 1mq2 d1mq2a3 A:151-171,173-178,190-197,261-274 1rzt d1rzta3 A:388-408,410-415,427-434,495-508 2gws d2gwsm3 M:388-408,410-415,427-434,495-508 2gws d2gwsa3 A:388-408,410-415,427-434,495-508 3c5f d3c5fb3 B:388-408,410-415,427-434,495-508 1xsl d1xsla3 A:388-408,410-415,427-434,495-508 2gws d2gwsi3 I:388-408,410-415,427-434,495-508 3c5f d3c5fa3 A:388-408,410-415,427-434,495-508 1xsl d1xsli3 I:388-408,410-415,427-434,495-508 1rzt d1rzti3 I:388-408,410-415,427-434,495-508 1xsl d1xsle3 E:388-408,410-415,427-434,495-508 1rzt d1rztm3 M:388-408,410-415,427-434,495-508 3c5g d3c5gb3 B:388-408,410-415,427-434,495-508 1xsl d1xslm3 M:388-408,410-415,427-434,495-508 1jn3 d1jn3a2 A:151-171,173-178,190-197,261-275 2bcr d2bcra3 A:388-408,410-415,427-434,495-508 2gws d2gwse3 E:388-408,410-415,427-434,495-508 1rzt d1rzte3 E:388-408,410-415,427-434,495-508 2pbe d2pbea2 A:3-19,20-27,42-50,106-116 3c5g d3c5ga3 A:388-408,410-415,427-434,495-508 1zqv d1zqva2 A:151-171,173-178,190-197,261-274 1xsp d1xspa3 A:388-408,410-415,427-434,495-508 2bcq d2bcqa3 A:388-408,410-415,427-434,495-508 2bcu d2bcua3 A:388-408,410-415,427-434,495-508 2bcs d2bcsa3 A:388-408,410-415,427-434,495-508 2pfp d2pfpa3 A:388-408,410-415,427-434,495-508 2pfq d2pfqa3 A:388-408,410-415,427-434,495-508 1huo d1huoa4 A:151-171,173-178,190-197,264-275 1bpd d1bpda3 A:151-171,173-178,190-197,261-274 2pfn d2pfna3 A:388-408,410-415,427-434,495-508 9icc d9icca4 A:151-171,173-178,190-197,264-274 9ici d9icia4 A:151-171,173-178,190-197,264-274 1zqq d1zqqa4 A:151-171,173-178,190-197,264-274 8icu d8icua4 A:151-171,173-178,190-197,264-274 2bpg d2bpgb4 B:151-171,173-178,190-197,264-275 8icj d8icja4 A:151-171,173-178,190-197,264-274 8ick d8icka4 A:151-171,173-178,190-197,264-274 1huz d1huzb4 B:151-171,173-178,190-197,264-275 7icl d7icla4 A:151-171,173-178,190-197,264-274 1zqs d1zqsa4 A:151-171,173-178,190-197,264-274 8icc d8icca4 A:151-171,173-178,190-197,264-274 8icx d8icxa4 A:151-171,173-178,190-197,264-274 1huo d1huob4 B:151-171,173-178,190-197,264-275 1zqd d1zqda4 A:151-171,173-178,190-197,264-274 9ica d9icaa4 A:151-171,173-178,190-197,264-274 8ics d8icsa4 A:151-171,173-178,190-197,264-274 8icn d8icna4 A:151-171,173-178,190-197,264-274 9icf d9icfa4 A:151-171,173-178,190-197,264-274 1zqm d1zqma4 A:151-171,173-178,190-197,264-274 8ica d8icaa4 A:151-171,173-178,190-197,264-274 8icz d8icza4 A:151-171,173-178,190-197,264-274 8icl d8icla4 A:151-171,173-178,190-197,264-274 1zqk d1zqka4 A:151-171,173-178,190-197,264-274 9icy d9icya4 A:151-171,173-178,190-197,264-274 8icv d8icva4 A:151-171,173-178,190-197,264-274 9icv d9icva4 A:151-171,173-178,190-197,264-274 8icg d8icga4 A:151-171,173-178,190-197,264-274 8icw d8icwa4 A:151-171,173-178,190-197,264-274 1zqf d1zqfa4 A:151-171,173-178,190-197,264-274 1zqe d1zqea4 A:151-171,173-178,190-197,264-274 1zql d1zqla4 A:151-171,173-178,190-197,264-274 8ico d8icoa4 A:151-171,173-178,190-197,264-274 8ict d8icta4 A:151-171,173-178,190-197,264-274 8icr d8icra4 A:151-171,173-178,190-197,264-274 9ich d9icha4 A:151-171,173-178,190-197,264-274 1zqi d1zqia4 A:151-171,173-178,190-197,264-274 8icq d8icqa4 A:151-171,173-178,190-197,264-274 7icv d7icva4 A:151-171,173-178,190-197,264-274 8ice d8icea4 A:151-171,173-178,190-197,264-274 1zqa d1zqaa4 A:151-171,173-178,190-197,264-274 1zqb d1zqba4 A:151-171,173-178,190-197,264-274 8icf d8icfa4 A:151-171,173-178,190-197,264-274 7ics d7icsa4 A:151-171,173-178,190-197,264-274 1zqt d1zqta4 A:151-171,173-178,190-197,264-274 1zqg d1zqga4 A:151-171,173-178,190-197,264-274 9icj d9icja4 A:151-171,173-178,190-197,264-274 1zqo d1zqoa4 A:151-171,173-178,190-197,264-274 9icx d9icxa4 A:151-171,173-178,190-197,264-274 1zqj d1zqja4 A:151-171,173-178,190-197,264-274 1zqp d1zqpa4 A:151-171,173-178,190-197,264-274 9icu d9icua4 A:151-171,173-178,190-197,264-274 1zqh d1zqha4 A:151-171,173-178,190-197,264-274 9icm d9icma4 A:151-171,173-178,190-197,264-274 8icp d8icpa4 A:151-171,173-178,190-197,264-274 9icn d9icna4 A:151-171,173-178,190-197,264-274 9icb d9icba4 A:151-171,173-178,190-197,264-274 8icm d8icma4 A:151-171,173-178,190-197,264-274 9icl d9icla4 A:151-171,173-178,190-197,264-274 1mq3 d1mq3a3 A:151-171,173-178,190-197,264-274 8ich d8icha4 A:151-171,173-178,190-197,264-274 1zqc d1zqca4 A:151-171,173-178,190-197,264-274 8ici d8icia4 A:151-171,173-178,190-197,264-274 7icm d7icma4 A:151-171,173-178,190-197,264-274 9icw d9icwa4 A:151-171,173-178,190-197,264-274 7icu d7icua4 A:151-171,173-178,190-197,264-274 9icq d9icqa4 A:151-171,173-178,190-197,264-274 8icb d8icba4 A:151-171,173-178,190-197,264-274 9ice d9icea4 A:151-171,173-178,190-197,264-274 9ico d9icoa4 A:151-171,173-178,190-197,264-274 7ict d7icta4 A:151-171,173-178,190-197,264-274 9icr d9icra4 A:151-171,173-178,190-197,264-274 2bpf d2bpfa4 A:151-171,173-178,190-197,264-274 1huz d1huza4 A:151-171,173-178,190-197,264-275 1zqn d1zqna4 A:151-171,173-178,190-197,264-274 9ict d9icta4 A:151-171,173-178,190-197,264-274 9ick d9icka4 A:151-171,173-178,190-197,264-274 7ice d7icea4 A:151-171,173-178,190-197,264-274 7ich d7icha4 A:151-171,173-178,190-197,264-274 1jaj d1jaja_ A:3-17,33-38,49-57,105-119 1zqr d1zqra4 A:151-171,173-178,190-197,264-274 2bcv d2bcva3 A:388-408,410-415,427-434,498-508 7icq d7icqa4 A:151-171,173-178,190-197,264-274 7ick d7icka4 A:151-171,173-178,190-197,264-274 1bpy d1bpya4 A:151-171,173-178,190-197,264-274 1xsn d1xsna3 A:388-408,410-415,427-434,498-508 7icj d7icja4 A:151-171,173-178,190-197,264-274 7ici d7icia4 A:151-171,173-178,190-197,264-274 1bpx d1bpxa4 A:151-171,172-178,190-198,261-274 2iso d2isoa3 A:151-171,173-178,190-197,264-274 2pfo d2pfoa3 A:388-408,410-415,427-434,498-508 2isp d2ispa3 A:151-171,173-178,190-197,264-274 2pxi d2pxia3 A:151-171,173-178,190-197,264-274 2fmp d2fmpa3 A:151-171,173-178,190-197,264-274 2fmq d2fmqa3 A:151-171,173-178,190-197,264-274 3c2k d3c2ka3 A:151-171,173-178,190-197,264-274 2fms d2fmsa3 A:151-171,173-178,190-197,264-274 3c2m d3c2ma3 A:151-171,173-178,190-197,264-274 1miy d1miya2 A:2-19,21-26,41-46,103-111 1ylq d1ylqb1 B:-1-13,15-21,34-41,72-83 3c2l d3c2la3 A:151-171,173-178,190-197,264-274 1miy d1miyb2 B:2-19,21-26,41-46,103-111 1ylq d1ylqa1 A:-1-13,15-21,34-41,72-83 8icy d8icya4 A:151-171,172-178,190-198,264-274 9icg d9icga4 A:151-171,172-178,190-198,264-274 1miv d1miva2 A:2-19,21-26,42-46,103-111 2o5a d2o5ab1 B:3-18,19-27,35-43,94-104 7ico d7icoa4 A:151-171,172-178,190-198,264-274 2o5a d2o5aa1 A:3-18,19-27,35-43,94-104 1miv d1mivb2 B:2-19,21-26,42-46,103-111 7icn d7icna4 A:151-171,172-178,190-198,264-274 7icp d7icpa4 A:151-171,172-178,190-198,264-274 9icp d9icpa4 A:151-171,172-178,190-198,264-274 7icr d7icra4 A:151-171,172-178,190-198,264-274 1bpe d1bpea3 A:151-171,172-178,190-198,261-274 2bpg d2bpga4 A:151-171,172-178,190-198,264-274 7icg d7icga4 A:151-171,172-178,190-198,264-274 1bpz d1bpza4 A:151-171,172-178,190-198,264-274 1zjn d1zjna3 A:151-171,172-178,190-198,264-274 1jqr d1jqra_ A:3-17,33-37,49-56,105-118 1wot d1wota_ A:8-21,22-28,42-48,81-93 2nrk d2nrka1 A:9-28,30-37,50-58,107-125 1no5 d1no5a_ A:10-26,28-33,46-53,87-98 2zha d2zhaa2 A:17-39,41-45,59-66,125-142 1uev d1ueva2 A:17-39,41-45,59-66,125-142 2zh2 d2zh2a2 A:17-39,41-45,59-66,125-142 1tfw d1tfwa2 A:17-39,41-45,59-66,125-142 1uet d1ueta2 A:17-39,41-45,59-66,125-142 1ueu d1ueua2 A:17-39,41-45,59-66,125-142 1vj7 d1vj7a2 A:210-233,236-241,267-272,328-338 1no5 d1no5b_ B:10-26,27-33,46-53,87-98 1ou5 d1ou5b2 B:13-27,28-35,50-55,115-123 1ou5 d1ou5a2 A:13-27,28-35,50-55,115-122 1miw d1miwa2 A:2-19,21-25,42-46,103-111 1miw d1miwb2 B:2-19,21-25,42-46,103-111 1tfy d1tfyb2 B:17-39,41-45,59-67,125-138 1tfw d1tfwd2 D:17-39,41-45,59-67,125-142 2dra d2draa2 A:17-39,41-45,59-67,125-142 2drb d2drba2 A:17-39,41-45,59-67,125-142 2b4v d2b4va2 A:53-76,78-83,97-104,271-289 2dvi d2dvia2 A:17-39,41-45,59-67,125-142 1tfw d1tfwb2 B:17-39,41-45,59-67,125-142 2zh6 d2zh6a2 A:17-39,41-45,59-67,125-142 1vj7 d1vj7b2 B:217-233,236-241,265-272,328-338 2dr9 d2dr9a2 A:17-39,41-45,59-67,125-142 2dr8 d2dr8a2 A:17-39,41-45,59-67,125-142 1tfy d1tfya2 A:17-39,41-45,59-67,125-142 1vfg d1vfga2 A:1-10,11-16,30-38,96-104 1tfy d1tfyd2 D:17-39,41-45,59-67,125-142 1vfg d1vfgb2 B:1-10,11-16,30-38,96-104 2zh9 d2zh9a2 A:17-39,41-45,59-67,125-142 2zh4 d2zh4a2 A:17-39,41-45,59-67,125-142 1sz1 d1sz1b2 B:18-39,41-45,59-67,125-142 1sz1 d1sz1a2 A:18-39,41-45,59-67,125-142 1tfy d1tfyc2 C:17-39,41-45,59-67,125-142 2dr7 d2dr7a2 A:17-39,41-45,59-67,125-142 2zh8 d2zh8a2 A:17-39,41-45,59-67,125-142 1r8b d1r8ba2 A:17-39,41-45,59-67,125-142 2zhb d2zhba2 A:17-39,41-45,59-67,125-142 2zh5 d2zh5a2 A:17-39,41-45,59-67,125-142 2zh3 d2zh3a2 A:17-39,41-45,59-67,125-142 2zh7 d2zh7a2 A:17-39,41-45,59-67,125-142 2dr5 d2dr5a2 A:17-39,41-45,59-67,125-142 1r89 d1r89a2 A:17-39,41-45,59-67,125-142 1tfw d1tfwc2 C:17-39,41-45,59-67,125-142 2zh1 d2zh1a2 A:17-39,41-45,59-67,125-142 1r8a d1r8aa2 A:17-39,41-45,59-67,125-142 2be3 d2be3b1 B:2-34,39-47,73-80,144-162 1r8c d1r8ca2 A:17-39,41-45,59-67,125-142 2o1p d2o1pb2 B:41-71,82-87,100-109,181-201 2o1p d2o1pa2 A:41-71,82-87,100-109,181-202 2hhp d2hhpa2 A:41-71,82-87,100-109,181-202 1q79 d1q79a2 A:54-84,95-100,113-122,194-215 1fa0 d1fa0b4 B:41-71,82-87,100-109,181-201 2be3 d2be3a1 A:2-34,38-47,73-81,144-162 1f5a d1f5aa4 A:54-84,95-100,113-122,194-215 3c66 d3c66b2 B:41-71,82-87,100-109,181-202 3c66 d3c66a2 A:41-71,82-87,100-109,181-202 1fa0 d1fa0a4 A:41-71,82-87,100-109,181-201 1q78 d1q78a2 A:54-84,95-100,113-122,194-215 1v4a d1v4aa2 A:111-143,155-161,173-180,238-250 4. d.360.1 PG1857-like PG1857-like alpha-beta-alpha-beta(2)-alpha(3); 3 layers, a/b/a; antiparallel beta-sheet, order: 132 2guk d2gukb1 B:33-48,50-56,60-68,68-80 2guk d2guka1 A:33-48,50-56,60-68,68-80 5. e.7.1 Carbohydrate phosphatase Carbohydrate phosphatase N-terminal domain is an alpha+beta, C-terminal domain is an alpha/beta with mixed beta-sheet 1ka0 d1ka0a_ A:291-306,307-313,329-335,337-355 1ka1 d1ka1a_ A:291-306,307-313,329-335,337-355 1qgx d1qgxa_ A:291-306,307-313,329-335,337-355 1k9y d1k9ya_ A:291-306,307-313,329-335,337-355 1k9z d1k9za_ A:291-306,307-313,329-335,337-355 2hhm d2hhma_ A:217-232,233-238,248-254,255-267 1ime d1imea_ A:217-232,233-238,248-254,255-267 1imb d1imba_ A:217-232,233-238,248-254,255-267 1ima d1imaa_ A:217-232,233-238,248-254,255-267 1vdw d1vdwa_ A:198-213,214-219,235-240,241-252 1ime d1imeb_ B:217-232,233-238,248-254,255-266 1lbx d1lbxb_ B:497-512,513-518,535-540,540-552 1awb d1awbb_ B:217-232,233-238,248-254,255-266 1imf d1imfa_ A:217-232,233-238,248-254,255-266 1imc d1imcb_ B:217-232,233-238,248-254,255-266 1ima d1imab_ B:217-232,233-238,248-254,255-266 1awb d1awba_ A:217-232,233-238,248-254,255-266 2hhm d2hhmb_ B:217-232,233-238,248-254,255-266 1lby d1lbya_ A:197-212,213-218,235-240,240-252 1imb d1imbb_ B:217-232,233-238,248-254,255-266 1lbv d1lbva_ A:197-212,213-218,235-240,240-252 1imc d1imca_ A:217-232,233-238,248-254,255-266 1lbx d1lbxa_ A:197-212,213-218,235-240,240-252 1xi6 d1xi6a_ A:199-214,215-219,236-241,242-250 1imd d1imda_ A:217-232,233-238,248-254,255-266 1lbz d1lbzb_ B:497-512,513-518,535-540,540-552 1lbv d1lbvb_ B:497-512,513-518,535-540,540-552 1lbw d1lbwb_ B:497-512,513-518,535-540,540-552 1lbw d1lbwa_ A:197-212,213-218,235-240,240-252 1imd d1imdb_ B:217-232,233-238,248-254,255-266 1lby d1lbyb_ B:497-512,513-518,535-540,540-552 1fbg d1fbgb_ B:276-292,293-298,315-320,320-335 1lbz d1lbza_ A:197-212,213-218,235-240,240-252 2fbp d2fbpb_ B:276-292,294-298,315-320,320-335 1spi d1spia_ A:302-318,319-324,341-346,347-358 1vdw d1vdwb_ B:202-213,214-219,235-240,241-253 1fta d1ftab_ B:276-292,293-298,315-320,321-335 1fta d1ftad_ D:276-292,293-298,315-320,321-335 1dbz d1dbzb_ B:301-317,318-323,340-345,346-357 1dbz d1dbza_ A:301-317,318-323,340-345,346-357 1g0i d1g0ia_ A:202-213,214-218,235-240,241-252 1dbz d1dbzc_ C:301-317,318-323,340-345,346-357 1spi d1spid_ D:302-318,319-324,341-346,347-358 1dbz d1dbzd_ D:301-317,318-323,340-345,346-357 1spi d1spib_ B:302-318,319-324,342-346,347-358 1fta d1ftaa_ A:276-292,293-298,315-320,321-335 1fta d1ftac_ C:276-292,293-298,315-320,321-335 1jp4 d1jp4a_ A:244-259,260-265,281-288,290-298 1fpb d1fpba_ A:276-292,293-298,315-320,321-335 1bk4 d1bk4a_ A:276-292,293-298,315-320,321-336 2fbp d2fbpa_ A:276-292,293-298,315-320,321-335 1fsa d1fsaa_ A:276-292,293-298,315-320,321-335 1fj6 d1fj6a_ A:276-292,293-298,315-320,321-335 1d9q d1d9qa_ A:301-317,318-323,340-345,346-357 1fbf d1fbfb_ B:276-292,293-298,315-320,321-335 1d9q d1d9qb_ B:301-317,318-323,340-345,346-357 3fbp d3fbpb_ B:276-292,293-298,315-320,321-335 4fbp d4fbpd_ D:276-292,293-298,315-320,321-335 1d9q d1d9qc_ C:301-317,318-323,340-345,346-357 1fpb d1fpbb_ B:276-292,293-298,315-320,321-335 3fbp d3fbpa_ A:276-292,293-298,315-320,321-335 5fbp d5fbpb_ B:276-292,293-298,315-320,321-335 1fbg d1fbga_ A:276-292,293-298,315-320,321-335 1dcu d1dcua_ A:301-317,318-323,340-345,346-357 1fbh d1fbhb_ B:276-292,293-298,315-320,321-335 1dcu d1dcub_ B:301-317,318-323,340-345,346-357 1fbh d1fbha_ A:276-292,293-298,315-320,321-335 1cnq d1cnqa_ A:276-292,293-298,315-320,321-335 1d9q d1d9qd_ D:301-317,318-323,340-345,346-357 1fbe d1fbea_ A:276-292,293-298,315-320,321-335 1fbc d1fbca_ A:276-292,293-298,315-320,321-335 1dcu d1dcuc_ C:301-317,318-323,340-345,346-357 1lev d1leva_ A:276-292,293-298,315-320,321-335 1eyj d1eyjb_ B:276-292,293-298,315-320,321-335 1g0h d1g0hb_ B:502-513,514-519,535-540,541-552 1rdz d1rdzb_ B:276-292,293-298,315-320,321-335 1fbp d1fbpb_ B:276-292,293-298,315-320,321-335 1inp d1inpa_ A:314-329,329-334,370-378,378-388 1g0h d1g0ha_ A:202-213,214-219,235-240,241-252 1lev d1levf_ F:276-292,293-298,315-320,321-335 1rdz d1rdza_ A:276-292,293-298,315-320,321-335 1fsa d1fsab_ B:276-292,293-298,315-320,321-335 1dcu d1dcud_ D:301-317,318-323,340-345,346-357 1nv3 d1nv3a_ A:1276-1292,1293-1298,1315-1320,1321-1335 1fbd d1fbdb_ B:276-292,293-298,315-320,321-335 1fpk d1fpkb_ B:276-292,293-298,315-320,321-335 1eyk d1eykb_ B:276-292,293-298,315-320,321-335 1frp d1frpa_ A:276-292,293-298,315-320,321-335 1nv2 d1nv2a_ A:1276-1292,1293-1298,1315-1320,1321-1335 5fbp d5fbpa_ A:276-292,293-298,315-320,321-335 1fpi d1fpib_ B:276-292,293-298,315-320,321-335 1fpi d1fpia_ A:276-292,293-298,315-320,321-335 1nux d1nuxa_ A:1276-1292,1293-1298,1315-1320,1321-1335 4fbp d4fbpc_ C:276-292,293-298,315-320,321-335 1nv6 d1nv6a_ A:1276-1292,1293-1298,1315-1320,1321-1335 1nv1 d1nv1a_ A:1276-1292,1293-1298,1315-1320,1321-1335 1nv5 d1nv5a_ A:1276-1292,1293-1298,1315-1320,1321-1335 1fpj d1fpja_ A:276-292,293-298,315-320,321-335 1nuy d1nuya_ A:1276-1292,1293-1298,1315-1320,1321-1335 1q9d d1q9da_ A:276-292,293-298,315-320,321-335 1fpf d1fpfb_ B:276-292,293-298,315-320,321-335 2f3b d2f3ba1 A:276-292,293-298,315-320,321-335 1fpl d1fplb_ B:276-292,293-298,315-320,321-335 1fpe d1fpeb_ B:276-292,293-298,315-320,321-335 4fbp d4fbpb_ B:276-292,293-298,315-320,321-335 1fj9 d1fj9b_ B:276-292,293-298,315-320,321-335 1eyi d1eyia_ A:276-292,293-298,315-320,321-335 1fbc d1fbcb_ B:276-292,293-298,315-320,321-335 1fj9 d1fj9a_ A:276-292,293-298,315-320,321-335 1nv0 d1nv0a_ A:1276-1292,1293-1298,1315-1320,1321-1335 1nv4 d1nv4a_ A:1276-1292,1293-1298,1315-1320,1321-1335 2qvu d2qvua1 A:276-292,293-298,315-320,321-336 1fpg d1fpgb_ B:276-292,293-298,315-320,321-335 1nuw d1nuwa_ A:1276-1292,1293-1298,1315-1320,1321-1335 1fpl d1fpla_ A:276-292,293-298,315-320,321-335 1fpj d1fpjb_ B:276-292,293-298,315-320,321-335 1nuz d1nuza_ A:1276-1292,1293-1298,1315-1320,1321-1335 1fbf d1fbfa_ A:276-292,293-298,315-320,321-335 1rdy d1rdya_ A:276-292,293-298,315-320,321-335 1kz8 d1kz8a_ A:276-292,293-298,315-320,321-335 1dk4 d1dk4b_ B:502-513,514-519,535-540,541-552 1eyk d1eyka_ A:276-292,293-298,315-320,321-335 1frp d1frpb_ B:276-292,293-298,315-320,321-335 1rdy d1rdyb_ B:276-292,293-298,315-320,321-336 1eyj d1eyja_ A:276-292,293-298,315-320,321-335 1kz8 d1kz8f_ F:276-292,293-298,315-320,321-335 1spi d1spic_ C:302-318,319-324,341-346,347-357 1nv7 d1nv7b_ B:2276-2292,2293-2298,2315-2320,2321-2335 4fbp d4fbpa_ A:276-292,293-298,315-320,321-335 1fbd d1fbda_ A:276-292,293-298,315-320,321-335 1fpk d1fpka_ A:276-292,293-298,315-320,321-335 2f3d d2f3da1 A:276-292,293-298,315-320,321-337 1fpd d1fpdb_ B:276-292,293-298,315-320,321-335 2f3h d2f3ha1 A:276-292,293-298,315-320,321-335 1fpf d1fpfa_ A:276-292,293-298,315-320,321-335 1fpd d1fpda_ A:276-292,293-298,315-320,321-335 2qvv d2qvvb1 B:276-292,293-298,315-320,321-337 1g0i d1g0ib_ B:502-513,514-519,535-540,541-552 1nv7 d1nv7a_ A:1276-1292,1293-1298,1315-1320,1321-1335 1fbp d1fbpa_ A:276-292,293-298,315-320,321-335 1fpe d1fpea_ A:276-292,293-298,315-320,321-335 2qvu d2qvub1 B:276-292,293-298,315-320,321-337 1q9d d1q9db_ B:276-292,293-298,315-320,321-335 1fpg d1fpga_ A:276-292,293-298,315-320,321-335 2qvv d2qvva1 A:276-292,293-298,315-320,321-337 1rdx d1rdxa_ A:276-292,294-298,315-319,320-335 2f3h d2f3hb1 B:276-292,293-298,315-320,321-337 1dk4 d1dk4a_ A:202-213,214-219,235-240,241-252 1fbe d1fbeb_ B:276-292,292-298,315-320,321-335 1jp4 d1jp4a_ A:244-259,260-265,281-288,299-307 6. c.97.1 Cytidine deaminase-like contains extra C-terminal strand 5, order 21345 ! Cytidine deaminase-like core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest 1vk9 d1vk9a_ A:2-17,19-24,26-32,34-47 1wn5 d1wn5d1 D:4-22,28-36,38-45,54-67 1wn5 d1wn5a1 A:4-22,28-36,38-45,54-67 2z3h d2z3hd1 D:4-22,28-36,38-45,54-67 1wn5 d1wn5c1 C:4-22,28-36,38-45,54-67 2z3g d2z3ga1 A:4-22,28-36,38-45,54-67 1wn5 d1wn5b1 B:4-22,28-36,38-45,54-67 2z3h d2z3ha1 A:4-22,28-36,38-45,54-67 1wn6 d1wn6a1 A:4-22,28-36,38-45,54-67 2z3h d2z3hc1 C:4-22,28-36,38-45,54-67 2z3g d2z3gd1 D:4-22,28-36,38-45,54-67 1wn6 d1wn6b1 B:4-22,28-36,38-45,54-67 2z3g d2z3gc1 C:4-22,28-36,38-45,54-67 2z3h d2z3hb1 B:4-22,28-36,38-45,54-67 2z3g d2z3gb1 B:4-22,28-36,38-45,54-67 2hxv d2hxva2 A:-3-17,26-33,34-42,49-62 2b3j d2b3jb1 B:2-22,26-33,34-42,53-67 2b3j d2b3ja1 A:1-22,26-33,34-42,53-67 2b3j d2b3jc1 C:1-22,26-33,34-42,53-67 1vq2 d1vq2a_ A:2-17,24-31,32-40,104-117 1wwr d1wwrd1 D:2-21,25-32,33-41,52-66 2fr6 d2fr6a1 A:12-29,38-45,47-53,65-78 1wwr d1wwrb1 B:2-21,25-32,33-41,52-66 1wwr d1wwrc1 C:2-21,25-32,33-41,52-66 1zab d1zabd1 D:12-29,38-45,47-53,65-78 2fr6 d2fr6d1 D:12-29,38-45,47-53,65-78 2fr5 d2fr5d1 D:12-29,38-45,47-53,65-78 1wwr d1wwra1 A:2-21,25-32,33-41,52-66 1zab d1zaba1 A:12-29,38-45,47-53,65-78 1zab d1zabb1 B:11-29,38-45,47-53,65-78 2fr6 d2fr6b1 B:11-29,38-45,47-53,65-78 2b3j d2b3jd1 D:3-22,26-33,34-42,53-67 1mq0 d1mq0a_ A:14-29,37-45,47-53,65-78 1zab d1zabc1 C:11-29,38-45,47-53,65-78 2fr5 d2fr5a1 A:12-29,37-45,47-53,65-78 1r5t d1r5ta_ A:7-25,33-41,43-49,61-74 1mq0 d1mq0b_ B:13-29,37-45,47-53,65-78 2d5n d2d5nd2 D:0-17,26-33,34-42,49-59 1r5t d1r5tb_ B:7-25,33-41,43-49,61-74 2fr5 d2fr5c1 C:11-29,37-45,47-53,65-78 2fr5 d2fr5b1 B:11-29,37-45,47-53,65-78 1ctu d1ctua1 A:48-64,74-80,82-88,102-115 1z3a d1z3ab1 B:18-37,41-48,49-57,68-82 1aln d1alna1 A:48-64,74-80,82-88,102-115 1z3a d1z3aa1 A:18-37,41-48,49-57,68-82 2fr6 d2fr6c1 C:11-29,37-45,47-53,65-78 1ctu d1ctua2 A:189-202,211-218,220-226,238-251 1r5t d1r5td_ D:7-25,33-41,43-49,61-74 1af2 d1af2a1 A:48-64,74-80,82-88,102-115 1ctt d1ctta2 A:189-202,211-218,220-226,238-251 1aln d1alna2 A:189-202,211-218,220-226,238-251 1ctt d1ctta1 A:48-64,74-80,82-88,102-115 1r5t d1r5tc_ C:7-25,33-41,43-49,61-74 2pw9 d2pw9d1 D:129-145,153-161,162-171,172-187 2a8n d2a8na1 A:3-22,26-33,34-42,53-67 1tiy d1tiya_ A:2-21,26-33,34-42,53-67 2d30 d2d30a1 A:2-17,26-33,35-41,53-66 1af2 d1af2a2 A:189-202,211-218,220-226,238-251 1ux0 d1ux0a_ A:2-17,26-33,35-41,53-66 1ux0 d1ux0b_ B:2-17,26-33,35-41,53-66 1ux1 d1ux1a_ A:2-17,26-33,35-41,53-66 2pw9 d2pw9c1 C:129-145,153-161,162-171,172-187 2d5n d2d5na2 A:1-17,26-33,34-42,49-59 1zcz d1zcza2 A:197-214,217-224,225-233,235-248 1ux1 d1ux1b_ B:2-17,26-33,35-41,53-66 1ux1 d1ux1c_ C:2-17,26-33,35-41,53-66 1wkq d1wkqa_ A:2-21,26-33,34-42,53-67 2d5n d2d5nc2 C:1-17,26-33,34-42,49-59 1pl0 d1pl0d2 D:236-258,260-267,268-276,297-311 2pw9 d2pw9a1 A:129-145,153-161,162-171,172-187 2pw9 d2pw9b1 B:129-145,153-161,162-171,172-187 1ux1 d1ux1d_ D:2-17,26-33,35-41,53-66 1pl0 d1pl0b2 B:236-258,260-267,268-276,297-311 2b3z d2b3zc2 C:1-17,26-33,34-42,49-59 2b3z d2b3zd2 D:0-20,26-33,34-42,49-59 1wkq d1wkqb_ B:2-21,26-33,34-42,53-67 2b3z d2b3za2 A:1-17,26-33,34-42,49-59 2g84 d2g84a1 A:25-44,48-56,57-66,77-91 2d30 d2d30b1 B:2-17,26-33,35-41,53-66 1jtk d1jtkb_ B:2-17,26-33,35-41,53-66 1jtk d1jtka_ A:2-17,26-33,35-41,53-66 1g8m d1g8mb2 B:237-259,261-268,269-277,298-312 1uwz d1uwzb_ B:2-17,26-33,35-41,53-66 1thz d1thzb2 B:237-259,261-268,269-277,298-312 1uwz d1uwza_ A:2-17,26-33,35-41,53-66 1pkx d1pkxb2 B:236-258,260-267,268-276,297-311 1g8m d1g8ma2 A:237-259,261-268,269-277,298-312 1pkx d1pkxd2 D:236-258,260-267,268-276,297-311 1thz d1thza2 A:237-259,261-268,269-277,298-312 1zcz d1zczb2 B:197-214,217-224,225-233,235-248 1pl0 d1pl0c2 C:236-258,260-267,268-276,297-311 1pkx d1pkxa2 A:236-258,260-267,268-276,297-311 2d5n d2d5nb2 B:1-17,26-33,34-42,49-59 1m9n d1m9nb2 B:237-259,261-268,269-277,298-312 2b3z d2b3zb2 B:1-17,26-33,34-42,49-59 1m9n d1m9na2 A:237-259,261-268,269-277,298-312 1tiy d1tiyb_ B:2-21,26-33,34-42,53-67 1pkx d1pkxc2 C:236-258,260-267,268-276,297-311 1oz0 d1oz0a2 A:237-259,261-268,269-277,298-312 1p4r d1p4rb2 B:236-258,260-267,268-276,297-311 1p4r d1p4ra2 A:236-258,260-267,268-276,297-311 1pl0 d1pl0a2 A:236-258,260-267,268-276,297-311 1oz0 d1oz0b2 B:237-259,261-268,269-277,298-312 1zcz d1zcza2 A:336-353,356-363,364-372,375-388 2a8n d2a8nb1 B:4-22,26-33,34-42,53-67 1pl0 d1pl0c2 C:411-428,431-438,439-447,450-470 1pl0 d1pl0b2 B:411-428,431-438,439-447,450-470 1pl0 d1pl0a2 A:411-428,431-438,439-447,450-470 1p4r d1p4rb2 B:411-428,431-438,439-447,450-470 1g8m d1g8ma2 A:412-429,432-439,440-448,451-471 1p4r d1p4ra2 A:411-428,431-438,439-447,450-470 1g8m d1g8mb2 B:412-429,432-439,440-448,451-471 1zcz d1zczb2 B:336-353,356-363,364-372,375-388 1thz d1thzb2 B:412-429,432-439,440-448,451-471 1m9n d1m9na2 A:412-429,432-439,440-448,451-471 1pkx d1pkxc2 C:411-428,431-438,439-447,450-470 1oz0 d1oz0a2 A:412-429,432-439,440-448,451-471 1oz0 d1oz0b2 B:412-429,432-439,440-448,451-471 1m9n d1m9nb2 B:412-429,432-439,440-448,451-471 1thz d1thza2 A:412-429,432-439,440-448,451-471 1pkx d1pkxb2 B:411-428,431-438,439-447,450-470 1pl0 d1pl0d2 D:411-428,431-438,439-447,450-470 1pkx d1pkxa2 A:411-428,431-438,439-447,450-470 1pkx d1pkxd2 D:411-428,431-438,439-447,450-470 1rb7 d1rb7b_ B:7-29,33-41,42-51,62-72 1p6o d1p6ob_ B:208-229,233-241,242-251,262-272 1rb7 d1rb7a_ A:8-29,33-41,42-51,62-72 1uaq d1uaqa_ A:8-29,33-41,42-51,62-72 1p6o d1p6oa_ A:8-29,33-41,42-51,62-72 1ox7 d1ox7b_ B:208-229,233-241,242-251,262-272 1uaq d1uaqb_ B:8-29,33-41,42-51,62-72 1ysb d1ysba1 A:8-29,33-41,42-51,62-72 1ox7 d1ox7a_ A:8-29,33-41,42-51,62-72 1ysd d1ysda1 A:8-29,33-41,42-51,62-72 1ysd d1ysdb1 B:208-229,233-241,242-251,262-272 1ysb d1ysbb1 B:208-229,233-241,242-251,262-272 9. c.117.1 Amidase signature (AS) enzymes Amidase signature (AS) enzymes possible duplication: the topologies of N- and C-terminal halves are similar; 3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213549A867 (A=10); strands from 5 to 9 are antiparallel to the rest 1ocl d1ocla_ A:154-164,165-171,188-195,196-209 1obl d1oblb_ B:154-164,165-171,188-195,196-209 1och d1ocha_ A:154-164,165-171,188-195,196-209 1o9p d1o9pa_ A:154-164,165-171,188-195,196-209 1obi d1obib_ B:154-164,165-171,188-195,196-209 1o9q d1o9qa_ A:154-164,165-171,188-195,196-209 1obk d1obka_ A:154-164,165-171,188-195,196-209 1o9o d1o9oa_ A:154-164,165-171,188-195,196-209 1obi d1obia_ A:154-164,165-171,188-195,196-209 1ocm d1ocmb_ B:154-164,165-170,188-195,196-209 1ocm d1ocma_ A:154-164,165-170,188-195,196-209 2f2a d2f2aa1 A:177-187,188-195,211-218,219-231 1o9o d1o9ob_ B:154-164,165-170,188-195,196-209 1ock d1ocka_ A:154-164,165-170,188-195,196-209 1och d1ochb_ B:154-164,165-170,188-195,196-209 1o9q d1o9qb_ B:154-164,165-170,188-195,196-209 1o9p d1o9pb_ B:154-164,165-170,188-195,196-209 1obj d1objb_ B:154-164,165-170,188-195,196-209 1ocl d1oclb_ B:154-164,165-170,188-195,196-209 1obk d1obkb_ B:154-164,165-170,188-195,196-209 2g5h d2g5ha1 A:177-187,188-193,211-218,219-231 1ock d1ockb_ B:154-164,165-170,188-195,196-209 1obj d1obja_ A:154-164,165-170,188-195,196-209 2df4 d2df4a1 A:425-435,436-447,448-458,461-477 1obl d1obla_ A:154-164,165-170,188-195,196-209 2dqn d2dqna1 A:425-435,436-447,448-458,461-477 1o9n d1o9nb_ B:155-164,165-170,188-195,196-209 2dqn d2dqna1 A:177-187,188-193,211-218,219-231 2g5h d2g5ha1 A:425-435,436-447,448-458,461-477 2g5i d2g5ia1 A:177-187,188-195,211-218,219-231 1o9n d1o9na_ A:155-164,165-170,188-195,196-209 1mt5 d1mt5n_ N:491-501,502-512,545-554,557-573 1mt5 d1mt5o_ O:240-250,251-256,278-285,286-299 1mt5 d1mt5j_ J:491-501,502-512,545-554,557-573 1mt5 d1mt5b_ B:491-501,502-512,545-554,557-573 2df4 d2df4a1 A:177-187,188-193,211-218,219-231 1mt5 d1mt5d_ D:240-250,251-256,278-285,286-299 1mt5 d1mt5k_ K:240-250,251-256,278-285,286-299 1mt5 d1mt5e_ E:240-250,251-256,278-285,286-299 1m21 d1m21b_ B:471-480,481-492,493-503,506-522 1m21 d1m21a_ A:471-480,481-492,493-503,506-522 1m22 d1m22a_ A:225-235,236-243,259-266,267-279 1m22 d1m22b_ B:225-235,236-243,259-266,267-279 1mt5 d1mt5f_ F:240-250,251-256,278-285,286-299 1mt5 d1mt5e_ E:491-501,502-512,545-554,557-573 1mt5 d1mt5m_ M:491-501,502-512,545-554,557-573 1mt5 d1mt5h_ H:240-250,251-256,278-285,286-299 1mt5 d1mt5l_ L:240-250,251-256,278-285,286-299 1mt5 d1mt5g_ G:240-250,251-256,278-285,286-299 1mt5 d1mt5b_ B:240-250,251-256,278-285,286-299 1mt5 d1mt5a_ A:240-250,251-256,278-285,286-299 1mt5 d1mt5i_ I:240-250,251-256,278-285,286-299 1mt5 d1mt5n_ N:240-250,251-256,278-285,286-299 1mt5 d1mt5m_ M:240-250,251-256,278-285,286-299 1mt5 d1mt5p_ P:240-250,251-256,278-285,286-299 1mt5 d1mt5j_ J:240-250,251-256,278-285,286-299 1m22 d1m22a_ A:471-480,480-492,493-503,506-522 1m22 d1m22b_ B:471-480,480-492,493-503,506-522 2gi3 d2gi3a1 A:409-419,420-431,432-442,445-460 1mt5 d1mt5c_ C:240-250,251-256,278-285,286-299 1m21 d1m21b_ B:225-235,236-241,259-266,267-279 1m21 d1m21a_ A:225-235,236-241,259-266,267-279 1obl d1oblb_ B:358-369,369-381,382-392,395-412 2gi3 d2gi3a1 A:164-174,175-180,198-205,206-218 1obk d1obka_ A:359-369,369-381,382-392,395-412 1obi d1obia_ A:359-369,369-381,382-392,395-412 1o9q d1o9qb_ B:358-369,370-381,382-392,395-412 1o9q d1o9qa_ A:359-369,369-381,382-392,395-412 1o9o d1o9oa_ A:359-369,369-381,382-392,395-412 1och d1ochb_ B:358-369,370-381,382-392,395-412 1och d1ocha_ A:359-369,369-381,382-392,395-412 1obk d1obkb_ B:359-369,370-381,382-392,395-412 1o9n d1o9nb_ B:359-369,370-381,382-392,395-412 1obj d1obja_ A:359-369,370-381,382-392,395-412 1o9n d1o9na_ A:359-369,370-381,382-392,395-412 1ocm d1ocmb_ B:359-369,370-381,382-392,395-412 1ocm d1ocma_ A:359-369,370-381,382-392,395-412 1o9o d1o9ob_ B:359-369,370-381,382-392,395-412 1obj d1objb_ B:359-369,370-381,382-392,395-412 1obl d1obla_ A:359-369,370-381,382-392,395-412 1ock d1ockb_ B:359-369,370-381,382-392,395-412 1ock d1ocka_ A:359-369,370-381,382-392,395-412 1ocl d1oclb_ B:359-369,370-381,382-392,395-412 1o9p d1o9pb_ B:359-369,370-381,382-392,395-412 1mt5 d1mt5d_ D:491-501,502-513,543-554,557-573 1mt5 d1mt5o_ O:491-501,502-513,543-554,557-573 1mt5 d1mt5g_ G:491-501,502-513,543-554,557-573 1mt5 d1mt5k_ K:491-501,502-513,543-554,557-573 1mt5 d1mt5h_ H:491-501,502-513,543-554,557-573 1mt5 d1mt5a_ A:491-501,502-513,543-554,557-573 1mt5 d1mt5c_ C:491-501,502-513,543-554,557-573 1mt5 d1mt5l_ L:491-501,502-513,543-554,557-573 1mt5 d1mt5i_ I:491-501,502-513,543-554,557-573 1mt5 d1mt5p_ P:491-501,502-513,543-554,557-573 1mt5 d1mt5f_ F:491-501,502-513,543-554,557-573 2f2a d2f2aa1 A:425-435,435-447,448-457,461-477 1obi d1obib_ B:358-369,369-381,382-391,395-412 2g5i d2g5ia1 A:425-435,435-447,448-457,461-477 1o9p d1o9pa_ A:359-369,369-381,382-391,395-412 1ocl d1ocla_ A:359-369,369-381,382-391,395-412 15. d.41.5 Molybdopterin synthase subunit MoaE alpha/beta-Hammerhead core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids 1fm0 d1fm0e_ E:14-25,29-38,92-102,103-122 1nvj d1nvjf_ F:14-26,29-38,92-102,103-122 1nvj d1nvja_ A:14-26,29-38,92-102,103-122 3bii d3biie1 E:14-26,29-38,92-102,103-122 1fma d1fmae_ E:14-26,29-38,92-102,103-122 1nvj d1nvjb_ B:14-26,29-38,92-102,103-122 1nvj d1nvjc_ C:14-26,29-38,92-102,103-122 1nvj d1nvje_ E:14-26,29-38,92-102,103-122 1nvj d1nvjd_ D:14-26,29-39,91-102,103-122 1nvi d1nvie_ E:14-26,29-39,91-102,103-122 18. d.58.42 N-utilization substance G protein NusG, N-terminal domain Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 1npp d1nppd3 D:22-38,43-48,137-144,173-185 1m1g d1m1gc3 C:22-38,43-48,137-144,173-187 1npp d1nppa3 A:22-38,43-48,137-144,173-187 1m1h d1m1ha2 A:22-38,43-48,137-144,173-186 1npr d1npra3 A:22-38,43-48,136-144,173-186 1m1g d1m1ga3 A:22-38,43-48,136-144,173-187 1nz8 d1nz8a_ A:14-30,34-40,64-71,105-117 1npp d1nppc3 C:22-38,43-48,137-144,173-187 1m1g d1m1gb3 B:22-38,43-49,137-144,173-187 1npp d1nppb3 B:22-38,43-48,136-144,173-187 1m1g d1m1gd3 D:22-38,43-48,136-144,173-187 21. d.58.32 FAD-linked oxidases, C-terminal domain duplication: contains two subdomains of this fold ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 1f0x d1f0xb1 B:1285-1300,1304-1311,1389-1398,1423-1437 1f0x d1f0xa1 A:285-300,304-311,389-398,423-437 1f0x d1f0xa1 A:436-449,451-463,492-503,506-522 1f0x d1f0xb1 B:1436-1449,1451-1463,1492-1503,1506-1522 1wve d1wveb1 B:378-388,389-401,433-446,447-469 1wve d1wvea1 A:378-388,389-401,433-446,447-469 1wvf d1wvfa1 A:378-388,389-401,433-446,447-469 1diq d1diqb1 B:378-388,390-401,433-444,447-469 1diq d1diqa1 A:378-388,390-401,433-444,447-469 1dii d1diia1 A:378-388,390-401,433-444,447-469 1dii d1diib1 B:378-388,390-401,433-444,447-469 1e8h d1e8hb1 B:407-416,419-431,463-475,477-499 2vao d2vaob1 B:407-418,419-431,463-475,477-499 2vao d2vaoa1 A:407-418,419-431,463-475,477-499 1e8h d1e8ha1 A:407-416,419-431,463-475,477-499 1e8f d1e8fa1 A:407-416,419-431,463-475,477-499 1e8f d1e8fb1 B:407-416,419-431,463-475,477-499 1i19 d1i19b1 B:299-308,308-316,321-329,415-422 1qlt d1qltb1 B:407-418,419-431,463-475,477-499 1qlu d1qlub1 B:407-418,419-431,463-475,477-499 1ahz d1ahzb1 B:407-418,419-431,463-475,477-499 1ahz d1ahza1 A:407-418,419-431,463-475,477-499 1qlt d1qlta1 A:407-418,419-431,463-475,477-499 1i19 d1i19a1 A:299-308,308-316,321-329,415-422 1ahv d1ahvb1 B:407-418,419-431,463-475,477-499 1ahv d1ahva1 A:407-418,419-431,463-475,477-499 2i0k d2i0ka1 A:299-308,308-316,321-329,415-422 1dzn d1dzna1 A:407-418,419-431,463-475,477-499 1qlu d1qlua1 A:407-418,419-431,463-475,477-499 1vao d1vaob1 B:407-418,419-431,463-475,477-499 1vao d1vaoa1 A:407-418,419-431,463-475,477-499 1w1j d1w1ja1 A:407-418,419-431,463-475,477-499 1e8g d1e8gb1 B:407-416,419-431,463-475,477-499 1e0y d1e0yb1 B:407-418,419-431,463-475,477-499 1e8g d1e8ga1 A:407-416,419-431,463-475,477-499 1w1k d1w1kb1 B:407-418,419-431,463-475,477-499 1ahu d1ahub1 B:407-418,419-431,463-475,477-499 1ahu d1ahua1 A:407-418,419-431,463-475,477-499 1w1l d1w1lb1 B:407-418,419-431,463-475,477-499 1e0y d1e0ya1 A:407-418,419-431,463-475,477-499 1w1j d1w1jb1 B:407-418,419-431,463-475,477-499 1w1m d1w1mb1 B:407-418,419-431,463-475,477-499 1w1m d1w1ma1 A:407-416,419-431,463-475,477-499 1w1k d1w1ka1 A:407-416,419-431,463-475,477-499 1w1l d1w1la1 A:407-416,419-431,463-475,477-499 1dzn d1dznb1 B:407-416,419-431,463-475,477-499 23. d.58.39 Glutamyl tRNA-reductase catalytic, N-terminal domain common fold is elaborated with additional secondary structures ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 1gpj d1gpja3 A:26-38,40-48,49-57,77-91 24. d.312.1 TM1622-like TM1622-like alpha-beta(3)-alpha-beta(4)-alpha; 3 layers, a/b/a; antiparallel beta-sheet, order: 1237654 1vr8 d1vr8a1 A:82-93,117-126,127-135,137-153 25. e.29.1 beta and beta-prime subunits of DNA dependent RNA-polymerase The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit ! beta and beta-prime subunits of DNA dependent RNA-polymerase Multidomain subunits of complex domain organization 2ja5 d2ja5a1 A:23-32,80-86,237-243,260-284 1ynn d1ynnd1 D:14-23,89-95,515-521,538-562 2nvt d2nvta1 A:23-32,80-86,237-243,260-283 1ynj d1ynjd1 D:14-23,89-95,515-521,538-562 2ja8 d2ja8a1 A:23-31,80-86,237-243,260-284 1twg d1twga_ A:23-31,80-86,237-243,261-283 2ja7 d2ja7m1 M:23-31,80-86,237-243,260-284 2ja7 d2ja7a1 A:23-31,80-86,237-243,260-284 1twa d1twaa_ A:23-31,80-86,237-243,261-283 3dxj d3dxjd1 D:14-22,89-95,515-521,538-561 2gho d2ghod1 D:14-23,89-95,224-230,247-270 1twc d1twca_ A:23-31,80-86,237-243,261-283 2cw0 d2cw0d1 D:14-23,89-95,515-521,539-561 2ja6 d2ja6a1 A:23-31,80-86,237-243,260-284 2a69 d2a69d1 D:14-23,89-95,515-521,538-561 2be5 d2be5d1 D:14-23,89-95,515-521,538-561 3dxj d3dxjn1 N:14-22,89-95,515-521,539-561 1twh d1twha_ A:23-31,80-86,237-243,261-283 2a68 d2a68d1 D:14-23,89-95,515-521,538-561 2a6h d2a6hd1 D:14-23,89-95,515-521,538-561 2yu9 d2yu9a1 A:23-31,80-86,237-243,260-283 1smy d1smyn_ N:14-23,89-95,515-521,538-561 2ppb d2ppbd1 D:14-23,90-95,515-520,538-561 2a6e d2a6ed1 D:14-23,89-95,515-521,538-561 2o5i d2o5in1 N:14-23,90-95,515-520,538-561 1i6v d1i6vd_ D:14-23,90-95,514-519,536-562 2o5i d2o5id1 D:14-23,90-95,515-520,538-561 2nvy d2nvya1 A:23-31,80-86,237-243,260-283 2b63 d2b63a1 A:23-31,80-86,237-243,260-284 1iw7 d1iw7d_ D:14-23,89-95,515-521,538-561 1zyr d1zyrd1 D:14-23,89-95,515-521,538-561 2o5j d2o5jn1 N:14-23,89-95,515-521,538-561 1zyr d1zyrn1 N:14-22,89-95,515-521,538-561 2a69 d2a69n1 N:14-23,89-95,515-521,538-561 1smy d1smyd_ D:14-23,89-95,515-521,538-561 2b8k d2b8ka1 A:23-31,79-86,237-244,260-284 1iw7 d1iw7n_ N:14-23,89-95,515-521,538-561 2be5 d2be5n1 N:14-23,89-95,515-521,538-561 2a6e d2a6en1 N:14-23,89-95,515-521,538-561 2o5j d2o5jd1 D:14-22,90-95,515-520,538-561 2a68 d2a68n1 N:14-23,89-95,515-521,538-561 2ppb d2ppbn1 N:14-23,90-95,515-520,538-561 2cw0 d2cw0n1 N:14-23,90-95,515-520,538-561 2nvq d2nvqa1 A:23-31,79-86,237-244,260-283 1twf d1twfa_ A:23-31,79-86,237-244,260-283 2a6h d2a6hn1 N:14-23,89-95,515-521,538-561 1i50 d1i50a_ A:23-31,79-86,237-244,260-283 1k83 d1k83a_ A:23-31,79-86,237-244,260-283 1i3q d1i3qa_ A:23-31,79-86,237-244,260-284 2e2i d2e2ia1 A:23-32,80-85,238-243,260-284 1i6h d1i6ha_ A:23-31,79-86,237-244,260-284 2nvx d2nvxa1 A:23-32,80-85,238-243,260-284 2e2h d2e2ha1 A:23-31,80-85,238-243,260-284 2nvz d2nvza1 A:23-31,80-85,238-243,260-284 2e2j d2e2ja1 A:23-31,80-85,238-243,260-284 2e2j d2e2ja1 A:1163-1173,1190-1197,1236-1243,1255-1271 1twh d1twha_ A:1163-1173,1190-1197,1236-1243,1255-1272 1twa d1twaa_ A:1163-1173,1190-1197,1236-1243,1255-1272 1twg d1twga_ A:1163-1173,1190-1197,1236-1243,1255-1272 1twc d1twca_ A:1163-1173,1190-1197,1236-1243,1255-1271 2nvx d2nvxa1 A:1163-1173,1190-1198,1236-1243,1255-1271 1twf d1twfb_ B:26-42,633-640,689-694,694-701 1twa d1twab_ B:26-42,633-640,689-694,694-701 1twc d1twcb_ B:26-42,633-640,689-694,694-701 1twh d1twhb_ B:26-42,633-640,689-694,694-701 2nvy d2nvyb1 B:26-42,631-640,689-694,694-701 1k83 d1k83b_ B:26-42,631-640,689-694,694-701 1i6h d1i6hb_ B:26-42,631-640,689-694,694-701 3cqz d3cqzb1 B:26-42,631-640,689-694,694-701 1i50 d1i50b_ B:26-42,630-640,689-694,694-701 1i3q d1i3qb_ B:26-42,630-640,689-694,694-701 2e2i d2e2ib1 B:26-42,630-640,689-694,694-701 2nvq d2nvqb1 B:26-42,631-640,689-694,694-701 2nvz d2nvzb1 B:370-391,577-583,584-591,592-607 3dxj d3dxjd1 D:984-1016,1040-1044,1056-1060,1066-1090 1i6h d1i6ha_ A:709-738,763-768,798-802,809-846 2ja7 d2ja7a1 A:367-375,438-446,485-491,494-506 2ja7 d2ja7m1 M:367-375,438-446,485-491,494-506 2ja5 d2ja5a1 A:367-375,438-446,485-491,494-506 2ja8 d2ja8a1 A:367-375,438-446,485-491,494-506 1i3q d1i3qa_ A:367-375,438-446,485-491,494-506 1twa d1twaa_ A:367-375,438-446,485-491,494-506 2ja6 d2ja6a1 A:367-375,438-446,485-491,494-506 1twf d1twfa_ A:367-375,438-446,485-491,494-506 1twg d1twga_ A:367-375,438-446,485-491,494-506 2nvy d2nvya1 A:709-738,763-768,798-802,809-846 2nvt d2nvta1 A:367-375,438-446,485-491,494-506 2b8k d2b8ka1 A:367-375,438-446,485-491,494-506 1twh d1twha_ A:367-375,440-446,485-491,494-506 1i6h d1i6ha_ A:368-375,438-446,485-491,494-506 2b63 d2b63a1 A:367-375,438-446,485-491,494-506 1twc d1twca_ A:367-375,440-446,485-491,494-506 2nvq d2nvqa1 A:367-375,438-446,485-491,494-506 2yu9 d2yu9a1 A:367-375,438-446,485-491,494-506 1i50 d1i50a_ A:368-375,438-446,485-491,494-506 2e2h d2e2ha1 A:367-375,438-446,485-491,494-506 2yu9 d2yu9a1 A:709-737,761-768,798-802,809-846 2b63 d2b63a1 A:709-738,763-768,798-803,809-846 1k83 d1k83a_ A:368-375,438-446,485-491,494-506 2e2j d2e2ja1 A:367-375,438-446,485-491,494-506 2nvz d2nvza1 A:367-374,438-446,485-491,494-506 27. d.162.1 LDH C-terminal domain-like LDH C-terminal domain-like unusual fold, defines family 1ib6 d1ib6a2 A:147-163,172-176,181-185,285-296 1ib6 d1ib6c2 C:147-163,172-176,181-185,285-296 1emd d1emda2 A:147-163,172-176,181-185,285-296 1ie3 d1ie3d2 D:147-163,172-176,181-185,285-296 2pwz d2pwzg2 G:147-163,172-176,181-185,285-296 1ib6 d1ib6b2 B:147-163,172-176,181-185,285-296 1ie3 d1ie3c2 C:147-163,172-176,181-185,285-296 2pwz d2pwzc2 C:147-163,172-176,181-185,285-296 1ie3 d1ie3a2 A:147-163,172-176,181-185,285-296 1mld d1mldd2 D:146-162,170-175,180-185,285-296 1mld d1mldc2 C:146-162,170-175,180-185,285-296 1mld d1mldb2 B:146-162,170-175,180-185,285-296 1gv1 d1gv1b2 B:143-160,169-173,177-181,284-299 1b8v d1b8va2 A:159-175,184-188,194-198,303-325 1b8u d1b8ua2 A:159-175,184-188,194-198,303-325 1ldn d1ldnb2 B:162-179,188-192,196-200,307-329 1t2f d1t2fb2 B:162-179,188-192,196-200,309-330 1t2f d1t2fd2 D:162-179,188-192,196-200,309-330 1gv1 d1gv1d2 D:143-160,169-173,177-181,284-302 1i0z d1i0zb2 B:162-179,188-192,196-200,309-330 1ldn d1ldnd2 D:162-179,188-192,196-200,307-329 1i10 d1i10f2 F:161-178,187-191,195-199,308-330 1i10 d1i10c2 C:161-178,187-191,195-199,308-329 1lth d1lthr2 R:149-166,175-179,183-187,296-318 1i10 d1i10b2 B:161-178,187-191,195-199,308-329 6ldh d6ldha2 A:162-179,188-192,196-200,306-326 1i10 d1i10d2 D:161-178,187-191,195-199,308-329 1hyh d1hyhb2 B:166-184,193-198,200-205,304-326 2ldb d2ldbb2 B:162-179,188-192,196-200,307-329 2ldb d2ldba2 A:162-179,188-192,196-200,307-329 2ldb d2ldbd2 D:162-179,188-192,196-200,307-329 2ldb d2ldbc2 C:162-179,188-192,196-200,307-329 1ldn d1ldna2 A:162-179,188-192,196-200,307-330 1i0z d1i0za2 A:162-179,188-192,196-200,309-330 1iz9 d1iz9b2 B:156-172,181-185,191-195,300-325 1i10 d1i10a2 A:161-178,187-191,195-199,308-329 1ldn d1ldnh2 H:162-179,188-192,196-200,307-329 8ldh d8ldha2 A:162-179,188-192,196-200,306-326 1ldn d1ldnc2 C:162-179,188-192,196-200,307-329 9ldt d9ldtb2 B:164-181,190-194,198-202,308-329 1iz9 d1iz9a2 A:156-172,181-185,191-195,300-325 2cmd d2cmda2 A:147-163,172-176,181-185,285-312 1ldn d1ldnf2 F:162-179,188-192,196-200,307-329 9ldb d9ldbb2 B:164-181,190-194,198-202,308-329 2cvq d2cvqb2 B:155-171,180-184,190-194,305-330 1bdm d1bdma2 A:155-171,180-184,190-194,305-330 1gv0 d1gv0a2 A:143-160,169-174,177-181,284-305 9ldt d9ldta2 A:164-181,190-194,198-202,308-330 1y7t d1y7tb2 B:155-171,180-184,190-194,305-330 1guz d1guzd2 D:143-160,169-173,177-181,284-305 2pwz d2pwza2 A:147-163,172-176,181-185,285-312 1wze d1wzeb2 B:155-171,180-184,190-194,305-330 1ldn d1ldne2 E:162-179,188-192,196-200,307-329 1bmd d1bmda2 A:155-171,180-184,190-194,305-330 1i10 d1i10h2 H:161-178,187-191,195-199,308-331 1guz d1guza2 A:143-160,169-174,177-181,284-305 2cvq d2cvqa2 A:155-171,180-184,190-194,305-330 1wzi d1wzib2 B:155-171,180-184,190-194,305-330 2j5r d2j5rd2 D:164-181,190-194,198-202,308-330 1wze d1wzea2 A:155-171,180-184,190-194,305-330 1wzi d1wzia2 A:155-171,180-184,190-194,305-330 1bmd d1bmdb2 B:155-171,180-184,190-194,305-330 1t2f d1t2fc2 C:162-179,188-192,196-200,309-331 2j5q d2j5qd2 D:164-181,190-194,198-202,308-330 1guz d1guzc2 C:143-160,169-174,177-181,284-305 1ldm d1ldma2 A:162-179,188-192,196-200,306-327 1y7t d1y7ta2 A:155-171,180-184,190-194,305-330 1gv0 d1gv0b2 B:143-160,169-174,177-181,284-305 1bdm d1bdmb2 B:155-171,180-184,190-194,305-330 1gv1 d1gv1a2 A:143-160,169-174,177-181,284-305 2j5k d2j5kd2 D:164-181,190-194,198-202,308-330 1ie3 d1ie3b2 B:147-163,172-176,181-185,285-312 1gv1 d1gv1c2 C:143-160,169-174,177-181,284-305 2j5r d2j5ra2 A:164-181,190-194,198-202,308-330 1t2f d1t2fa2 A:162-179,188-192,196-200,309-331 1guz d1guzb2 B:143-160,169-174,177-181,284-305 2j5q d2j5qa2 A:164-181,190-194,198-202,308-330 1o6z d1o6za2 A:164-181,190-194,198-202,308-330 2j5r d2j5rc2 C:164-181,190-194,198-202,308-330 2j5k d2j5kc2 C:164-181,190-194,198-202,308-330 2j5q d2j5qc2 C:164-181,190-194,198-202,308-330 1i10 d1i10e2 E:161-178,187-191,195-199,307-329 1o6z d1o6zb2 B:164-181,190-194,198-202,308-330 1ldn d1ldng2 G:162-179,188-192,196-200,307-330 2j5k d2j5ka2 A:164-181,190-194,198-202,308-330 2j5r d2j5rb2 B:164-181,190-194,198-202,308-330 2j5q d2j5qb2 B:164-181,190-194,198-202,308-330 1d3a d1d3aa2 A:164-181,190-194,198-202,308-330 2j5k d2j5kb2 B:164-181,190-194,198-202,308-330 1d3a d1d3ab2 B:164-181,190-194,198-202,308-330 1o6z d1o6zc2 C:164-181,190-194,198-202,308-330 2hlp d2hlpb2 B:164-181,190-194,198-202,308-330 1hye d1hyea2 A:147-164,173-177,181-185,289-313 2hlp d2hlpa2 A:164-181,190-194,198-202,308-330 1hyg d1hygb2 B:147-164,173-177,181-185,289-313 1hyg d1hyga2 A:147-164,173-177,181-185,289-313 1o6z d1o6zd2 D:164-181,190-194,198-202,308-330 1hlp d1hlpa2 A:162-179,188-192,196-200,306-328 1hlp d1hlpb2 B:162-179,188-192,196-200,306-328 4mdh d4mdhb2 B:155-171,180-184,190-194,305-331 1hyh d1hyhd2 D:166-184,193-197,201-205,304-329 1mld d1mlda2 A:146-162,170-175,180-185,285-313 1a5z d1a5za2 A:164-181,190-194,198-202,308-333 1hyh d1hyhc2 C:166-184,193-197,201-205,304-329 1hyh d1hyha2 A:166-184,193-197,201-205,304-329 5mdh d5mdha2 A:155-171,180-184,190-194,305-333 5mdh d5mdhb2 B:155-171,180-184,190-194,305-333 1ldb d1ldbd2 D:163-179,188-192,196-200,307-329 1ldb d1ldba2 A:163-179,188-192,196-200,307-329 1ldb d1ldbb2 B:163-179,188-192,196-200,307-329 1ldb d1ldbc2 C:163-179,188-192,196-200,307-329 1y6j d1y6ja2 A:149-165,174-178,182-186,294-317 1obb d1obba2 A:174-188,194-202,203-213,411-436 1s6y d1s6ya2 A:172-187,192-201,202-212,377-401 1up7 d1up7f2 F:162-177,182-191,192-202,352-376 1up7 d1up7g2 G:162-177,182-191,192-202,352-376 1up7 d1up7e2 E:162-176,182-191,192-202,352-376 1up7 d1up7a2 A:162-177,182-191,192-202,352-376 1up7 d1up7h2 H:162-177,182-191,192-202,352-376 1up7 d1up7b2 B:162-177,182-191,192-202,352-376 1up7 d1up7d2 D:162-177,182-191,192-202,352-376 1up7 d1up7c2 C:162-177,182-191,192-202,352-376 1obb d1obbb2 B:174-188,193-202,203-213,411-436 1up6 d1up6f2 F:162-177,182-191,192-202,352-376 1up4 d1up4h2 H:162-177,182-191,192-202,352-376 1up4 d1up4c2 C:162-177,182-191,192-202,352-376 1up4 d1up4a2 A:162-177,182-191,192-202,352-376 1up6 d1up6d2 D:162-177,182-191,192-202,352-376 1up4 d1up4e2 E:162-177,182-191,192-202,352-376 1up6 d1up6b2 B:162-177,182-191,192-202,352-376 1up6 d1up6h2 H:162-177,182-191,192-202,352-376 1up6 d1up6a2 A:162-177,182-191,192-202,352-376 1up4 d1up4d2 D:162-177,182-191,192-202,352-376 1up4 d1up4b2 B:162-177,182-191,192-202,352-376 1up4 d1up4f2 F:162-177,182-191,192-202,352-376 1up4 d1up4g2 G:162-177,182-191,192-202,352-376 1up6 d1up6g2 G:162-177,182-191,192-202,352-376 1up6 d1up6c2 C:162-177,182-191,192-202,352-376 1up6 d1up6e2 E:162-177,182-191,192-202,352-376 28. b.84.2 Rudiment single hybrid motif Barrel-sandwich hybrid sandwich of half-barrel shaped beta-sheets 1ulz d1ulza1 A:295-304,331-341,383-393,394-410 3eth d3ethb1 B:247-255,278-287,313-323,324-340 1bnc d1bncb1 B:294-305,332-341,383-393,394-409 3eth d3etha1 A:247-255,278-287,313-323,324-340 2gps d2gpsa1 A:296-305,332-342,383-393,394-410 2vr1 d2vr1b1 B:294-305,332-341,383-393,394-410 3etj d3etjb1 B:247-255,278-287,313-323,324-340 2gps d2gpsb1 B:296-305,332-341,383-393,394-410 1dv2 d1dv2a1 A:294-305,332-342,383-393,394-410 1w96 d1w96b1 B:385-396,452-460,506-514,515-534 1bnc d1bnca1 A:294-305,332-342,383-393,394-410 2gpw d2gpwb1 B:296-305,332-341,383-393,394-410 2vr1 d2vr1a1 A:294-305,332-342,383-393,394-410 1dv1 d1dv1b1 B:296-305,332-341,383-393,394-410 1dv1 d1dv1a1 A:294-305,332-342,383-393,394-410 1dv2 d1dv2b1 B:296-305,332-341,383-393,394-410 2gpw d2gpwa1 A:296-305,332-342,383-393,394-410 2j9g d2j9ga1 A:296-305,332-341,383-393,394-410 2gpw d2gpwc1 C:296-305,332-342,383-393,394-410 2gpw d2gpwd1 D:296-305,332-342,383-393,394-410 2j9g d2j9gb1 B:296-305,332-342,383-393,394-410 1b6s d1b6sb1 B:247-255,278-287,313-322,324-340 3etj d3etja1 A:247-255,278-287,313-322,324-340 1b6s d1b6sc1 C:247-255,278-287,313-322,324-340 1b6s d1b6sa1 A:247-255,278-287,313-322,324-340 1b6r d1b6ra1 A:247-255,278-287,313-322,324-340 1b6s d1b6sd1 D:247-255,278-287,313-322,324-340 1gso d1gsoa1 A:295-303,329-339,382-392,393-408 1vkz d1vkzb1 B:279-291,314-324,361-371,372-388 1vkz d1vkza1 A:279-291,314-324,361-371,372-388 1w96 d1w96c1 C:385-396,452-463,503-514,515-534 1w96 d1w96a1 A:385-396,452-463,503-514,515-534 1w93 d1w93a1 A:385-396,452-464,503-514,515-534 1ez1 d1ez1a1 A:285-295,320-333,359-371,373-389 1kji d1kjia1 A:285-295,320-333,359-371,373-389 1kji d1kjib1 B:285-295,320-333,359-371,373-389 1kjj d1kjjb1 B:285-295,320-333,359-371,373-389 1ez1 d1ez1b1 B:285-295,320-333,359-371,373-389 1kjj d1kjja1 A:285-295,320-333,359-371,373-389 1eyz d1eyzb1 B:285-295,320-333,359-371,373-389 1kjq d1kjqb1 B:285-295,320-333,359-371,373-389 1eyz d1eyza1 A:285-295,320-333,359-371,373-389 1kj9 d1kj9a1 A:285-295,320-333,359-371,373-389 1kjq d1kjqa1 A:285-295,320-333,359-371,373-389 1kj8 d1kj8a1 A:285-295,320-333,359-371,373-389 1kj9 d1kj9b1 B:285-295,320-333,359-371,373-389 1kj8 d1kj8b1 B:285-295,320-333,359-371,373-389 29. e.41.1 Adenylylcyclase toxin (the edema factor) Domain 1 has topological and active site similarity to the Nucleotidyltransferases (eg. 1kny N-domain); domain 3 binds calmodulin ! Adenylylcyclase toxin (the edema factor) 3 domains: (1&2) alpha+beta, with domain 2 being inserted in domain 1; (3) all-alpha 1lvc d1lvcb_ B:297-306,591-598,600-607,607-623 1k8t d1k8ta_ A:297-306,592-598,600-606,607-623 1k93 d1k93c_ C:297-306,591-598,600-607,607-623 1s26 d1s26a_ A:297-306,591-598,600-607,607-623 1k93 d1k93a_ A:297-306,591-598,600-607,607-623 1s26 d1s26c_ C:297-306,591-598,600-607,607-623 1k90 d1k90b_ B:297-306,591-598,600-607,607-623 1s26 d1s26b_ B:297-306,591-598,600-607,607-623 1k90 d1k90a_ A:297-306,591-598,600-607,607-623 1k93 d1k93b_ B:297-306,591-598,600-607,607-623 1k90 d1k90c_ C:297-306,591-598,600-607,607-623 1sk6 d1sk6a_ A:297-306,591-598,600-607,607-623 1pk0 d1pk0b_ B:297-306,591-598,600-607,607-623 1pk0 d1pk0a_ A:297-306,591-598,600-607,607-623 1pk0 d1pk0c_ C:297-306,591-598,600-607,607-623 1lvc d1lvcc_ C:297-306,591-598,600-607,607-623 1lvc d1lvca_ A:297-306,591-598,600-607,607-623 1sk6 d1sk6c_ C:297-306,591-598,600-607,607-623 1sk6 d1sk6b_ B:297-306,591-598,600-607,607-623 30. c.90.1 Tetrapyrrole methylase Tetrapyrrole methylase consists of two non-similar domains ! Domain 1 has parallel sheet of 5 strands, order 32415 ! Domain 2 has mixed sheet of 5 strands, order 12534; strands 4 & 5 are antiparallel to the rest 1wyz d1wyza1 A:122-132,193-200,206-212,212-220 1wyz d1wyzd1 D:122-132,193-200,206-212,212-220 1ve2 d1ve2b1 B:161-177,180-187,213-219,220-230 1wyz d1wyzb1 B:122-132,193-200,206-213,212-220 1wyz d1wyzc1 C:122-132,193-200,206-213,212-220 1ve2 d1ve2a1 A:167-177,180-187,213-219,220-231 2dek d2deka1 A:115-124,202-208,214-220,220-227 1wng d1wnga1 A:115-124,202-208,214-220,220-227 1vce d1vcea1 A:115-124,202-208,214-220,220-227 1vhv d1vhvb_ B:112-122,186-193,199-206,205-213 1s4d d1s4de_ E:188-200,203-212,240-246,247-256 1vce d1vceb1 B:115-124,202-208,214-220,220-227 2dek d2dekb1 B:115-124,202-208,214-220,220-227 1s4d d1s4dk_ K:188-200,203-212,240-246,247-256 1s4d d1s4dm_ M:188-200,203-212,240-246,247-256 1vhv d1vhvb_ B:168-181,186-193,218-226,229-241 1s4d d1s4dg_ G:188-200,203-212,240-246,247-256 1vhv d1vhva_ A:168-181,186-193,218-226,229-241 1s4d d1s4di_ I:188-200,203-212,240-246,247-256 1pjs d1pjsa2 A:383-398,403-410,436-442,443-452 1s4d d1s4dh_ H:188-200,205-212,240-246,247-256 1s4d d1s4da_ A:188-200,205-212,240-246,247-256 1s4d d1s4dd_ D:188-200,205-212,240-246,247-256 1s4d d1s4df_ F:188-200,205-212,240-246,247-256 1s4d d1s4dl_ L:188-200,205-212,240-246,247-256 1s4d d1s4dj_ J:188-200,205-212,240-246,247-256 1s4d d1s4db_ B:188-200,205-212,240-246,247-256 1pjt d1pjtb2 B:386-398,403-410,436-442,443-452 1pjq d1pjqb2 B:386-398,403-410,436-442,443-452 1pjs d1pjsb2 B:386-398,403-410,436-442,443-452 1vhv d1vhva_ A:139-153,186-193,218-226,229-241 1vhv d1vhvb_ B:139-153,186-193,218-226,229-241 1wde d1wdea_ A:183-203,211-220,245-251,254-266 36. d.52.6 BolA-like Alpha-lytic protease prodomain-like core: alpha-beta(2)-(alpha)-beta; 2 layers: alpha/beta 1ny8 d1ny8a_ A:6-19,21-27,31-40,76-87 1v9j d1v9ja_ A:31-44,46-53,60-68,103-111 40. e.62.1 Heme iron utilization protein-like Heme iron utilization protein-like 2 domains; d1 - 3-helical bundle similar to the homeodomain-like fold; d2 - 6-stranded beta-barrel capped by two helices at one end, similar topology to the PH-like fold 1u9t d1u9ta1 A:29-38,41-46,106-115,144-156 2j0p d2j0pa1 A:31-40,43-47,108-119,146-158 2j0r d2j0ra1 A:31-40,43-47,108-119,146-158 2hqv d2hqva1 A:51-59,63-69,128-140,171-186 43. d.58.62 Ribosomal protein L10-like consists of globular N-terminal domain, structurally similar to NDK, and the L7/L12-binding C-terminal alpha-helical tail Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 1zav d1zava1 A:71-79,112-119,120-125,124-134 1zaw d1zawa1 A:73-81,114-119,120-125,124-134 45. c.74.1 AraD/HMP-PK domain-like AraD/HMP-PK domain-like 3 layers: a/b/a; mixed (mostly antiparallel) beta-sheet of 9 strands, order 432159876; left-handed crossover between strands 4 and 5 2php d2phpe1 E:312-323,330-336,391-401,402-423 1e4c d1e4cp_ P:71-85,88-94,155-162,163-189 2pb9 d2pb9a1 A:339-351,357-364,428-438,439-451 1dzy d1dzyp_ P:71-85,88-94,155-162,163-189 2pb9 d2pb9b1 B:339-351,357-364,428-438,439-451 1e46 d1e46p_ P:71-85,88-94,155-162,163-189 1dzw d1dzwp_ P:73-85,88-94,155-162,163-189 1dzx d1dzxp_ P:73-85,88-94,155-162,163-189 1e47 d1e47p_ P:73-85,88-94,155-162,163-189 1e4b d1e4bp_ P:73-85,88-94,155-162,163-189 1fua d1fuaa_ A:73-85,88-94,155-162,163-189 1dzv d1dzvp_ P:73-85,88-94,155-162,163-189 1dzz d1dzzp_ P:73-85,88-94,155-162,163-189 1e48 d1e48p_ P:73-85,88-94,155-162,163-189 1e49 d1e49p_ P:73-85,88-94,155-162,163-189 3fua d3fuaa_ A:73-85,88-94,155-162,163-189 2fua d2fuaa_ A:73-85,88-94,155-162,163-189 1e4a d1e4ap_ P:73-85,88-94,155-162,163-189 1dzu d1dzup_ P:73-85,88-94,155-162,163-189 2php d2phpa1 A:312-327,330-336,391-401,402-421 2php d2phpd1 D:312-327,330-336,391-401,402-421 4fua d4fuaa_ A:73-85,88-94,155-162,163-189 2php d2phpb1 B:312-324,330-336,391-401,402-423 1gt7 d1gt7d_ D:117-133,137-143,212-219,220-245 1gt7 d1gt7s_ S:117-133,137-143,212-219,220-245 1gt7 d1gt7n_ N:117-133,137-143,212-219,220-245 1gt7 d1gt7k_ K:117-133,137-143,212-219,220-245 1gt7 d1gt7b_ B:117-133,137-143,212-219,220-245 1gt7 d1gt7t_ T:117-133,137-143,212-219,220-245 1gt7 d1gt7p_ P:117-133,137-143,212-219,220-245 1gt7 d1gt7l_ L:117-133,137-143,212-219,220-245 1gt7 d1gt7e_ E:117-133,137-143,212-219,220-245 1gt7 d1gt7a_ A:117-133,137-143,212-219,220-245 1gt7 d1gt7c_ C:117-133,137-143,212-219,220-245 1gt7 d1gt7h_ H:117-133,137-143,212-219,220-245 1gt7 d1gt7r_ R:117-133,137-143,212-219,220-245 1ojr d1ojra_ A:117-133,137-143,212-219,220-245 1gt7 d1gt7m_ M:117-133,137-143,212-219,220-245 1gt7 d1gt7f_ F:117-133,137-143,212-219,220-245 1gt7 d1gt7g_ G:117-133,137-143,212-219,220-245 1gt7 d1gt7o_ O:117-133,137-143,212-219,220-245 1gt7 d1gt7i_ I:117-133,137-143,212-219,220-245 1gt7 d1gt7q_ Q:117-133,137-143,212-219,220-245 1gt7 d1gt7j_ J:117-133,137-143,212-219,220-245 1k0w d1k0wd_ D:74-88,91-97,171-178,179-205 1jdi d1jdid_ D:74-88,91-97,171-178,179-205 1jdi d1jdie_ E:74-88,91-97,171-178,179-205 1jdi d1jdia_ A:74-88,91-97,171-178,179-205 1jdi d1jdif_ F:74-88,91-97,171-178,179-205 1jdi d1jdic_ C:74-88,91-97,171-178,179-205 1jdi d1jdib_ B:74-88,91-97,171-178,179-205 1k0w d1k0we_ E:74-88,91-97,171-178,179-205 1k0w d1k0wb_ B:74-88,91-97,171-178,179-205 1pvt d1pvta_ A:98-116,119-125,192-199,200-225 1k0w d1k0wa_ A:74-88,91-97,171-178,179-205 1k0w d1k0wc_ C:74-88,91-97,171-178,179-205 1k0w d1k0wf_ F:74-88,91-97,171-178,179-205 58. b.113.1 N-terminal domain of MutM-like DNA repair proteins N-terminal domain of MutM-like DNA repair proteins pseudobarrel; capped on both ends by alpha-helices 1k3x d1k3xa2 A:2-18,43-51,52-59,112-119 1k3w d1k3wa2 A:2-18,43-51,52-59,112-119 2ea0 d2ea0a2 A:2-18,43-51,52-59,112-119 2f5q d2f5qa2 A:3-19,50-59,60-67,121-129 1r2z d1r2za2 A:3-19,50-59,60-67,121-129 1l2c d1l2ca2 A:3-19,50-59,60-67,121-129 1l2d d1l2da2 A:3-19,50-59,60-67,121-129 1l2b d1l2ba2 A:3-19,50-59,60-67,121-129 1pji d1pjia2 A:2-18,46-56,57-64,118-130 1r2y d1r2ya2 A:3-19,50-59,60-67,121-129 1nnj d1nnja2 A:2-18,46-56,57-64,118-130 1pm5 d1pm5a2 A:2-18,46-56,57-64,118-130 1pjj d1pjja2 A:2-18,46-56,57-64,118-130 1xc8 d1xc8a2 A:2-18,46-56,57-64,118-130 1tdz d1tdza2 A:2-18,46-56,57-64,118-130 1l1t d1l1ta2 A:3-19,50-59,60-67,121-129 1kfv d1kfvb2 B:2-18,45-56,57-64,118-130 2f5s d2f5sa2 A:3-15,50-59,60-67,121-129 1kfv d1kfva2 A:2-18,45-56,57-64,118-130 1q39 d1q39a2 A:5-18,43-51,52-59,119-126 1q3b d1q3ba2 A:2-18,43-51,52-59,119-126 1q3c d1q3ca2 A:2-18,43-51,52-59,119-126 59. d.74.4 GAD domain-like DCoH-like beta(2)-alpha-beta(2)-alpha; 2 layers, alpha/beta 1il2 d1il2b2 B:1294-1302,1316-1325,1388-1398,1398-1418 1eqr d1eqra2 A:294-302,316-325,388-398,398-418 1eqr d1eqrc2 C:294-302,316-325,388-398,398-418 1c0a d1c0aa2 A:294-302,316-325,388-398,398-418 1zq1 d1zq1c2 C:289-296,309-318,376-385,385-406 1zq1 d1zq1d2 D:289-296,309-318,376-385,385-406 1eqr d1eqrb2 B:295-302,316-325,388-398,398-418 1il2 d1il2a2 A:295-302,316-325,388-398,398-418 1efw d1efwa2 A:302-309,318-327,382-392,392-412 1eqr d1eqrc2 C:304-314,316-325,388-398,398-418 1efw d1efwb2 B:302-310,318-327,382-392,392-412 61. d.340.1 CofE-like CofE-like consists of two different domains; d1: beta-alpha-beta-alpha-beta(2)-alpha-beta, mixed sheet of 5 strands, order:15234, strands 2 and 3 are parralel; d2 is inserted in d1 after strand 2 and comprises a helix-turn-helix motif and two 3-stranded sheets 2g9i d2g9ia1 A:72-83,83-90,92-98,239-249 2phn d2phna1 A:72-83,83-90,92-98,239-249 2phn d2phnb1 B:72-83,83-90,92-98,239-249 64. d.87.1 FAD/NAD-linked reductases, dimerisation (C-terminal) domain both first two domains are of same beta/beta/alpha fold ! CO dehydrogenase flavoprotein C-domain-like core: beta(3,4)-alpha(3); alpha+beta sandwich 1bhy d1bhya3 A:341-353,482-489,532-543,544-559 1ojt d1ojta3 A:341-353,482-489,532-543,544-559 1grg d1grga3 A:227-242,375-382,428-438,439-454 4gr1 d4gr1a3 A:227-242,375-382,428-438,439-454 4grt d4grta3 A:227-242,375-382,428-438,439-454 1grb d1grba3 A:227-242,375-382,428-438,439-454 1gsn d1gsna3 A:227-242,375-382,428-438,439-454 3grs d3grsa3 A:227-242,375-382,428-438,439-454 1grf d1grfa3 A:227-242,375-382,428-438,439-454 1xan d1xana3 A:227-242,375-382,428-438,439-454 1grt d1grta3 A:227-242,375-382,428-438,439-454 1bwc d1bwca3 A:227-242,375-382,428-438,439-454 1dnc d1dnca3 A:227-242,375-382,428-438,439-454 1k4q d1k4qa3 A:227-242,375-382,428-438,439-454 1gra d1graa3 A:227-242,375-382,428-438,439-454 1jeh d1jehb3 B:223-238,367-374,417-428,429-444 1dxl d1dxlb3 B:217-232,359-366,409-420,421-436 1v59 d1v59b3 B:223-238,367-374,417-428,429-444 1gre d1grea3 A:227-242,375-382,428-438,439-454 5grt d5grta3 A:227-242,375-382,428-438,439-454 1v59 d1v59a3 A:223-238,367-374,417-428,429-444 1dxl d1dxla3 A:217-232,359-366,409-420,421-436 1dxl d1dxlc3 C:217-232,359-366,409-420,421-436 1dxl d1dxld3 D:217-232,359-366,409-420,421-436 1jeh d1jeha3 A:223-238,367-374,417-428,429-444 1lpf d1lpfb3 B:220-235,360-367,410-421,422-437 1get d1getb3 B:207-222,347-354,399-410,415-426 1lvl d1lvla3 A:211-226,347-353,397-408,409-424 1fea d1feac3 C:230-245,369-376,420-431,432-447 1nda d1ndaa3 A:231-246,369-376,420-431,432-447 1nda d1ndac3 C:231-246,369-376,420-431,432-447 1nda d1ndab3 B:231-246,369-376,420-431,432-447 1nda d1ndad3 D:231-246,369-376,420-431,432-447 1fea d1fead3 D:230-245,369-376,420-431,432-447 1feb d1feba3 A:230-245,369-376,420-431,432-447 1geu d1geua3 A:207-222,347-354,400-409,410-426 2grt d2grta3 A:227-242,375-382,428-437,439-454 1bzl d1bzlb3 B:232-247,370-377,421-432,433-448 3grt d3grta3 A:227-242,375-382,428-437,439-454 1tyt d1tytb3 B:231-246,370-377,421-432,433-448 1h6v d1h6va3 A:229-244,378-385,433-442,444-459 1get d1geta3 A:207-222,347-354,400-409,415-426 1h6v d1h6vd3 D:229-244,378-385,433-442,444-459 2tpr d2tpra3 A:230-245,369-376,420-431,432-447 1h6v d1h6ve3 E:229-244,378-385,433-442,444-459 1ger d1gera3 A:207-222,347-354,400-409,415-426 1h6v d1h6vb3 B:229-244,378-385,433-442,444-459 1h6v d1h6vf3 F:229-244,378-385,433-442,444-459 1ger d1gerb3 B:207-222,347-354,400-409,415-426 1geu d1geub3 B:207-222,347-354,400-409,415-426 1xdi d1xdib2 B:222-237,360-367,411-421,422-437 1ges d1gesa3 A:207-222,347-354,400-409,415-426 1ges d1gesb3 B:207-222,347-354,400-409,415-426 1h6v d1h6vc3 C:229-244,378-385,433-442,444-459 1onf d1onfa3 A:215-230,388-395,444-454,456-471 1lpf d1lpfa3 A:220-235,360-367,410-420,422-437 1xdi d1xdia2 A:222-237,360-367,410-421,422-437 3lad d3ladb3 B:220-235,360-367,410-420,422-437 1joa d1joaa3 A:190-205,333-341,383-394,397-411 3lad d3lada3 A:220-235,360-367,410-420,422-437 1npx d1npxa3 A:190-205,333-341,383-394,397-411 1nhs d1nhsa3 A:190-205,333-341,383-394,397-411 2npx d2npxa3 A:190-205,333-341,383-394,396-411 1nhr d1nhra3 A:190-205,333-341,383-394,397-411 1nhp d1nhpa3 A:190-205,333-341,383-394,397-411 1nhq d1nhqa3 A:190-205,333-341,383-394,397-411 1f8w d1f8wa3 A:190-205,333-341,383-394,397-411 1fea d1feaa3 A:230-245,369-376,420-430,432-447 1fea d1feab3 B:230-245,369-376,420-430,432-447 1gxf d1gxfb3 B:232-247,370-377,421-431,433-448 1fec d1fecb3 B:230-245,369-376,420-430,432-447 1tyt d1tyta3 A:231-246,370-377,421-431,433-448 1fec d1feca3 A:230-245,369-376,420-430,432-447 1aog d1aogb3 B:232-247,370-377,421-431,433-448 1gxf d1gxfa3 A:232-247,370-377,421-431,433-448 1feb d1febb3 B:230-245,369-376,420-430,432-447 1typ d1typb3 B:231-246,370-377,421-431,433-448 1aog d1aoga3 A:232-247,370-377,421-431,433-448 1bzl d1bzla3 A:232-247,370-377,421-431,433-448 2tpr d2tprb3 B:230-245,369-376,420-430,432-447 1typ d1typa3 A:231-246,370-377,421-431,433-448 1ebd d1ebdb3 B:216-231,356-363,406-416,418-433 1ebd d1ebda3 A:216-231,356-363,406-416,418-433 66. d.214.1 Hypothetical protein MTH1880 Hypothetical protein MTH1880 beta-alpha-beta(2)-alpha(2); 3 layers, alpha/beta/alpha; antiparallel beta-sheet: order 123 1iqo d1iqoa_ A:21-29,36-45,50-56,62-75 1iqs d1iqsa_ A:21-31,38-45,51-56,62-75 76. d.58.59 Rnp2-like contains extra C-terminal helix Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 2czv d2czvc1 C:30-47,55-64,65-74,105-115 2av5 d2av5a1 A:30-47,55-64,65-74,105-114 2av5 d2av5c1 C:30-47,55-64,65-74,105-114 2czv d2czvd1 D:30-47,55-64,65-74,105-115 2av5 d2av5b1 B:30-47,55-64,65-74,105-114 2av5 d2av5d1 D:30-47,55-64,65-74,105-114 2av5 d2av5e1 E:30-47,55-64,65-74,105-114 85. e.51.1 Urocanase Urocanase 3 domains; d1: alpha+beta [alpha(2)-beta(3); mixed sheet: 213]; d2: alpha/beta of the NAD(P)-binding Rossmann-fold superfamily (scop_sf 51735, most similar to scop_fa 51883 and scop_fa 51736); d3: alpha+beta of the glutamine synthetase/guanido kinase fold (scop_cf 55930); d1 and d3 form a single beta-sheet 1x87 d1x87b_ B:135-157,353-362,402-409,409-427 1x87 d1x87a_ A:135-157,354-362,402-408,409-427 1uwk d1uwka_ A:140-162,357-367,407-414,414-432 1uwk d1uwkb_ B:140-162,357-367,407-414,414-432 1w1u d1w1ub_ B:140-162,357-367,407-414,414-432 1w1u d1w1ua_ A:140-162,357-367,407-414,414-432 1uwl d1uwlb_ B:140-162,357-367,407-414,414-432 1uwl d1uwla_ A:140-162,357-367,407-414,414-432 88. d.125.1 Ornithine decarboxylase C-terminal domain Ornithine decarboxylase C-terminal domain complex alpha+beta motif 1ord d1orda3 A:223-235,654-660,663-670,674-692 1ord d1ordb3 B:223-235,654-660,663-670,674-692 90. d.15.13 Nqo1 middle domain-like possibly evolved from 2Fe-2S ferredoxins; contains no iron-sulfur cluster ! beta-Grasp (ubiquitin-like) core: beta(2)-alpha-beta(2); mixed beta-sheet 2143 2fug d2fugj3 J:271-281,286-293,325-333,336-352 2fug d2fug13 1:271-281,286-293,325-333,336-352 2fug d2fugs3 S:271-281,286-293,325-333,336-352 2fug d2fuga3 A:271-281,286-293,325-333,336-352 93. d.193.1 Hsp33 domain Hsp33 domain 3 layers: beta/alpha/beta; buried helix 1vzy d1vzyb1 B:35-57,154-165,167-180,200-208 1vzy d1vzya1 A:35-57,153-165,167-180,200-208 1vzy d1vzya1 A:35-57,153-165,167-180,184-198 1vq0 d1vq0a1 A:33-54,150-162,163-176,181-195 1vq0 d1vq0b1 B:33-54,150-162,163-176,181-195 1vq0 d1vq0a1 A:33-54,150-162,163-176,197-205 1vq0 d1vq0b1 B:33-54,150-162,163-176,197-205 1vzy d1vzyb1 B:35-57,154-165,167-180,184-198