List of the counted superfamily hits for pattern ID: 86 (enumeration index: query35) of S4

List of the counted superfamily hits for pattern ID: 86 (enumeration index: query35) of S4

SCOP superfamily ID superfamiily description corresponding fold description
c.79.1Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes consists of two similar domains related by pseudo dyad; duplication ! core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214
c.59.1MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 3 layers: a/b/a; mixed beta-sheet of 6 strands, order 126345; strand 1 is antiparallel to the rest
c.109.1PEP carboxykinase N-terminal domain PEP carboxykinase N-terminal domain contains mixed beta-sheets; topology is partly similar to that of the catalytic C-terminal domain
b.40.2Bacterial enterotoxins OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
c.91.1PEP carboxykinase-like PEP carboxykinase-like contains a P-loop NTP-binding motif; mixed beta-sheet folds into a barrel-like structure with helices packed on one side
e.40.1Cullin homology domain Cullin homology domain 3 domains: (1) 4-helical bundle; (2) alpha+beta; (3) "winged helix"-like
d.58.29Nucleotide cyclase common fold is elaborated with additional secondary structures ! Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
d.116.1YbaK/ProRS associated domain YbaK/ProRS associated domain core: alpha-beta-alpha-beta(2)-(alpha-beta)2-alpha-beta(2)-alpha-beta; 3 layers; bifurcated mixed sheet
b.43.2FucI/AraA C-terminal domain-like Reductase/isomerase/elongation factor common domain barrel, closed; n=6, S=10; greek-key
d.261.1Hypothetical protein PH1602 Hypothetical protein PH1602 complex alpha+beta fold; contains a region of similarity to the ferredoxin-like fold
b.69.3Nitrous oxide reductase, N-terminal domain 7-bladed beta-propeller consists of seven 4-stranded beta-sheet motifs; meander
d.354.1Shew3726-like Shew3726-like beta(3)-alpha(n)-beta; 2 layers, a/b; mixed beta-sheet, order 1234, strands 3 and 4 are parallel with a left-handed crossover connection
d.341.1Peptidoglycan deacetylase N-terminal noncatalytic region Peptidoglycan deacetylase N-terminal noncatalytic region consists of two different domains, d1: [alpha-beta(2)-alpha-beta(3); 3 layers: a/b/a; mixed beta-sheet, order 12345, strands 2 and 3 are parallel to each other with a left-handed crossover connection], d2: alpha-beta(3)-alpha; 2 layers; antiparallel beta-sheet, order 123]
e.25.1Sec1/munc18-like (SM) proteins Sec1/munc18-like (SM) proteins 3 domains: (1 and 2) alpha+beta; (3) mostly alpha, inserted in domain 2
d.260.1Suppressor of Fused, N-terminal domain Suppressor of Fused, N-terminal domain unusual fold; bifurcated beta-sheet; left-handed beta-alpha-beta unit
b.40.11TM0957-like extra N-terminal region and large insertion after strand 3 together form an alpha-helical subdomain ! OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
d.147.1Methenyltetrahydromethanopterin cyclohydrolase Methenyltetrahydromethanopterin cyclohydrolase consists of two alpha+beta subdomains
b.120.1Tp47 lipoprotein, N-terminal domain Tp47 lipoprotein, N-terminal domain complex fold; consists of two intertwined subdomains