List of the counted superfamily hits for pattern ID: 14 (enumeration index: query39) of S4

List of the counted superfamily hits for pattern ID: 14 (enumeration index: query39) of S4

SCOP superfamily ID superfamiily description corresponding fold description
b.25.1Osmotin, thaumatin-like protein has two smaller insertion domains ! Osmotin, thaumatin-like protein sandwich; 11 strands in 2 sheets
d.153.1N-terminal nucleophile aminohydrolases (Ntn hydrolases) N-terminal residue provides two catalytic groups, nucleophile and proton donor ! Ntn hydrolase-like 4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
b.82.1RmlC-like cupins Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
b.3.5Cna protein B-type domain Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
b.18.1Galactose-binding domain-like Galactose-binding domain-like sandwich; 9 strands in 2 sheets; jelly-roll
d.160.1Carbon-nitrogen hydrolase Carbon-nitrogen hydrolase 4 layers: alpha/beta/beta/alpha; mixed beta sheets; contains duplication
b.24.1Hyaluronate lyase-like, C-terminal domain Hyaluronate lyase-like, C-terminal domain sandwich, 10 strands in 2 sheets; "folded meander"
d.153.2Archaeal IMP cyclohydrolase PurO has a putative active site in the same topological location as the Ntn hydrolase but lacks the N-terminal nucleophile ! Ntn hydrolase-like 4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
b.82.6Thiamin pyrophosphokinase, substrate-binding domain Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
b.82.2Clavaminate synthase-like Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold ! Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
b.22.1TNF-like TNF-like sandwich, 10 strands in 2 sheets; jelly-roll
b.85.6MoeA C-terminal domain-like beta-clip double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
b.5.1alpha-Amylase inhibitor tendamistat alpha-Amylase inhibitor tendamistat sandwich; 6 strands in 2 sheets
b.82.5TRAP-like shorter variant of double-helix; assembles in large ring-like structures containing from 9 to 11 domains ! Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
b.6.1Cupredoxins contains copper-binding site ! Cupredoxin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands
b.85.4dUTPase-like forms tight trimer through an additional beta-sheet in each subunit ! subunit beta-sheets are orthogonally packed around the three-fold axis ! beta-clip double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
b.71.1Glycosyl hydrolase domain this domain is C-terminal to the catalytic beta/alpha barrel domain ! Glycosyl hydrolase domain folded sheet; greek-key
b.121.4Positive stranded ssRNA viruses Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
b.29.1Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases sandwich; 12-14 strands in 2 sheets; complex topology
e.52.1NAD kinase/diacylglycerol kinase-like NAD kinase/diacylglycerol kinase-like 2 domains: d1 [alpha/beta; related to the PFK N-terminal domain (scop_sf 53784)]; d2 [all-beta; atypical beta-sandwich made of 4 structural repeats of beta(3) unit]
b.1.13Superoxide reductase-like Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
b.3.3VHL Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
b.135.1Superantigen (mitogen) Ypm Superantigen (mitogen) Ypm sandwich; 9 strands in 2 sheets; jelly-roll
b.7.1C2 domain (Calcium/lipid-binding domain, CaLB) two constituent families are related by circular permutation ! C2 domain-like sandwich; 8 strands in 2 sheets; greek-key
d.96.2ApbE-like duplication: contains two differently decorated beta(2)-alpha(2)-beta(2) subdomains, similar to other T-fold domains; probably does not form the tunnel-shaped oligomers ! T-fold beta(2)-alpha(2)-beta(2); 2 layers: alpha/beta; antiparallel sheet 1234 ! tunnel-shaped: its known members form wide oligomeric barrels different sizes
d.344.1PriA/YqbF domain associated with known or presumed DNA-binding domains; this superfamily also includes the C-terminal domain of PriA (PDB entry 1zt2)GINS/PriA/YqbF domain beta(4)-alpha-beta; 3-stranded antiparallel beta-sheet (strands 4,1 and 5) are covered on the same side by the helix and beta hairpin of strands 2 and 3; similarity to the L9 N-domain-like fold (scop_cf 55657) and the PsaD fold (scop_sf 64243)
b.121.3Nucleoplasmin-like core domain oligomerizes into a pentameric ring structure ! Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
b.1.2Fibronectin type III Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
b.26.1SMAD/FHA domain has a few short helices inserted in loops ! SMAD/FHA domain sandwich; 11 strands in 2 sheets; greek-key
b.11.1gamma-Crystallin-like gamma-Crystallin-like sandwich; 8 strands in 2 sheets; greek-key ! duplication: has internal pseudo twofold symmetry
b.1.9CBD9-like has additional strand at N-terminus; the active site in a similar topological location as the Cu,Zn SOD site ! Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
d.159.1Metallo-dependent phosphatases different families of this superfamily are groupped in a single Pfam family, Metallo-dependent phosphatases 4 layers: alpha/beta/beta/alpha; mixed beta sheets; contains duplication
b.115.1Calcium-mediated lectin Calcium-mediated lectin sandwich; 9 strands in 2 sheets; greek-key
b.23.1Spermadhesin, CUB domain CUB-like sandwich, 10 strands in 2 sheets; jelly-roll
b.132.1Supernatant protein factor (SPF), C-terminal domain Supernatant protein factor (SPF), C-terminal domain sandwich; 8 strands in 2 sheets; jelly-roll; similarity to the Nucleoplasmin-like/VP fold
b.32.1gp9 gp9 consists of two different beta-sandwich domains unrelated to other beta-sandwich folds
b.1.5Transglutaminase, two C-terminal domains Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
b.1.7Actinoxanthin-like Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
b.8.1TRAF domain-like has a circularly permuted immunoglobulin-fold topology with extra strand ! TRAF domain-like sandwich; 8 strands in 2 sheets; greek-key
b.58.1PK beta-barrel domain-like PK beta-barrel domain-like barrel, closed; n=7, S=10; complex topology
b.7.4Rab geranylgeranyltransferase alpha-subunit, insert domain C2 domain-like sandwich; 8 strands in 2 sheets; greek-key
b.7.5Smr-associated domain-like C2 domain-like sandwich; 8 strands in 2 sheets; greek-key
b.1.11PapD-like contains PP switch between strands D and C' ! Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
b.14.1Calpain large subunit, middle domain (domain III) Calpain large subunit, middle domain (domain III) sandwich; 8 strands in 2 sheets; jelly-roll
d.187.1Photosystem I subunit PsaD Photosystem I subunit PsaD beta-BETA(2)-beta-alpha-beta(2); antiparallel sheet: order 2134 packed against helix and BETA-hairpin on the same side; irregular C-terminal tail
b.33.1ISP domain ISP domain consists of two all-beta subdomains: conserved small domain has a rubredoxin-like fold; larger domain consists of 6 beta-stands packed in either sandwich of two 3-stranded sheets or closed barrel (n=6; S=8)
b.82.3cAMP-binding domain-like Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
b.30.5Galactose mutarotase-like probable carbohydrate-binding domain in enzymes acting on sugars ! Supersandwich sandwich; 18 strands in 2 sheets
b.121.5ssDNA viruses Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
b.19.1Viral protein domain forms homotrimers ! Viral protein domain sandwich; 9 strands in 2 sheets; jelly-roll; form trimers
d.181.1Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit unusual fold; contains a left-handed beta-alpha-beta unit
b.1.4beta-Galactosidase/glucuronidase domain Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
b.7.2Periplasmic chaperone C-domain C2 domain-like sandwich; 8 strands in 2 sheets; greek-key
b.134.1Smp-1-like Smp-1-like sandwich; 9 strands in 2 sheets; greek-key/jelly-roll
b.2.5p53-like transcription factors Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
b.121.7Satellite viruses Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
d.194.1CNF1/YfiH-like putative cysteine hydrolases CNF1/YfiH-like putative cysteine hydrolases 4 layers: alpha/beta/beta/alpha; mixed beta sheets
e.65.1VPA0735-like VPA0735-like consists of a cluster of helices and two beta-sandwich domains of similar topology; probable duplication
b.1.16Lamin A/C globular tail domain Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
b.150.1Putative glucosidase YicI, C-terminal domain Putative glucosidase YicI, C-terminal domain sandwich; 10 strands in two sheets
b.1.12Purple acid phosphatase, N-terminal domain Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
b.2.2Carbohydrate-binding domain Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
b.80.3Cell-division inhibitor MinC, C-terminal domain superhelix turns are made of three short strands each ! Single-stranded right-handed beta-helix superhelix turns are made of parallel beta-strands and (short) turns
b.123.1Hypothetical protein TM1070 Hypothetical protein TM1070 sandwich; 8 strands in 2 sheets; jelly-roll
e.68.1YacF-like probable biological unit is a dimerYacF-like 2 domains; d1: kinked four-helical bundle, inserted in d2: beta-sandwich of 7 strands in two sheets
b.72.2Carbohydrate binding domain WW domain-like core: 3-stranded meander beta-sheet
b.1.3PKD domain Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
b.78.1alpha-D-mannose-specific plant lectins beta-Prism II consists of 3 4-stranded sheets; strands are perpendicular to the 3-fold axis ! duplication: consists of two domains of this fold
b.28.1Baculovirus p35 protein has a few helices inserted in loops ! Baculovirus p35 protein sandwich; 14 strands in 2 sheets; greek-key
d.41.2Nicotinate/Quinolinate PRTase N-terminal domain-like alpha/beta-Hammerhead core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
d.273.1YjbQ-like YjbQ-like beta(2)-alpha-beta(2)-alpha(2)-beta(3); contains a beta-sandwich: 7 strands in 2 sheets; trimerizes with orthogonally packed beta-sheets
b.1.15Integrin domains Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
d.79.9BB2672-like contains extra N-terminal strand and a beta-hairpin insertion between strands 3 and 4 that packs against the main beta-sheetBacillus chorismate mutase-like core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
b.82.7Calcium ATPase, transduction domain A a distorted variant of double-helix ! Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
b.30.6V-region of surface antigen I/II (SA I/II, PAC) Supersandwich sandwich; 18 strands in 2 sheets
b.2.4Alpha-macroglobulin receptor domain Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
f.10.1Viral glycoprotein, central and dimerisation domains Viral glycoprotein, central and dimerisation domains 2 intertwined domains; all-beta and alpha+beta
b.116.1Viral chemokine binding protein m3 Viral chemokine binding protein m3 consists of two different beta-sandwich domains of partial topological similarity to immunoglobulin-like folds
b.166.1MAL13P1.257-like MAL13P1.257-like complex fold; duplication: consists of two intertwinned structural repeats related by pseudo dyad
b.121.2Group II dsDNA viruses VP duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits ! trimeric; in the trimers, the domains are arranged around pseudo six-fold axis ! Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
a.104.1Cytochrome P450 Cytochrome P450 multihelical
b.3.2Carboxypeptidase regulatory domain-like Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
b.1.8Cu,Zn superoxide dismutase-like has additional strand at N-terminus ! Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
b.130.1Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), peptide-binding domain beta-sandwich: 8 strands in 2 sheets
b.103.1MoeA N-terminal region -like MoeA N-terminal region -like complex fold made of bifurcated and coiled b-sheets
d.131.1DNA clamp DNA clamp contains two helices and two beta sheets ! duplication: fold has internal pseudo two-fold symmetry
b.2.7Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor duplication: one domain of this fold is inserted into another domain of the same fold ! Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
b.3.7Hypothetical protein PA1324 Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
b.30.2Amine oxidase catalytic domain Supersandwich sandwich; 18 strands in 2 sheets
b.23.2Collagen-binding domain N-terminal strand appears only in calcium-free form ! CUB-like sandwich, 10 strands in 2 sheets; jelly-roll
b.121.1PHM/PNGase F members of this superfamily bind peptide substrates ! duplication: consists of two domains of this fold packed together like the adjacent nucleoplasmin subunits ! Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
b.85.1AFP III-like domain duplication: consists of two structural repeats related by pseudo dyad ! beta-clip double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
e.12.1DNA topoisomerase IV, alpha subunit DNA topoisomerase IV, alpha subunit 2 domains: (1) toprim alpha/beta; (2) "winged helix"-like
c.91.1PEP carboxykinase-like PEP carboxykinase-like contains a P-loop NTP-binding motif; mixed beta-sheet folds into a barrel-like structure with helices packed on one side
b.85.5Tlp20, baculovirus telokin-like protein similar to dUTPase in fold and trimeric assembly ! beta-clip double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
b.1.22ASF1-like contains extra C-terminal strand ! Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
b.23.3Acetamidase/Formamidase-like decorated fold with additional structures; contains extra C-terminal alpha+beta subdomain: beta(2)-alpha(2)-beta(2): antiparallel beta-sheet, order 1243 ! CUB-like sandwich, 10 strands in 2 sheets; jelly-roll
b.2.6Cytochrome f, large domain Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
b.1.27CalX-like Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
b.84.3Duplicated hybrid motif half-barrel sheet of 8 strands sandwiched with two 3-stranded sheets ! Barrel-sandwich hybrid sandwich of half-barrel shaped beta-sheets
b.154.1Agglutinin HPA-like forms similar trimers to the PCSK9 V domain; strand directions of the subunit beta-sheets are parallel to the three-fold symmetry axis; ! HPA-like sandwich, 6 strands in 2 sheets; jelly-roll (truncated); also includes the pending PCSK9 V domain-like superfamily (the C-terminal domains of 2p4e and 2pmw)
d.155.1Pyruvoyl-dependent histidine and arginine decarboxylases two chains result from self-processing single-chain precursor; form heterohexamer ! Pyruvoyl-dependent histidine and arginine decarboxylases duplication of beta-alpha-beta(2) motif; 4 layers: alpha/beta/beta/alpha; contains "silk" beta-sandwich
f.46.1HlyD-like secretion proteins HlyD-like secretion proteins consists of three domains: beta-barrel (res. 29-38,170-259; scop_cf 50412); barrel-sandwich hybrid (39-72,135-169; scop_sf 51230) and long alpha-hairpin (73-134; scop_cf 46556)
b.85.7SET domain duplication: the core is composed of two structural repeats similar to (circularly permuted) repeats of AFPIII ! also contains a substrate-binding alpha+beta subdomain inserted in the core ! beta-clip double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
b.112.1C-terminal domain of mollusc hemocyanin analogous to the Ig-like domain of arthropod hemocyanin; similar sequential but different spatial position relative the shared domain ! C-terminal domain of mollusc hemocyanin six-stranded beta-sandwich, jelly-roll/greek-key topology
b.2.8beta-sandwich domain of Sec23/24 Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
f.9.1Perfringolysin Perfringolysin 2 domains: (1) alpha+beta; (2) all-beta, similar to the CalB domain fold but the two last strands are transposed
b.98.1Leukotriene A4 hydrolase N-terminal domain Leukotriene A4 hydrolase N-terminal domain duplication: two beta-sandwiches of similar topologies are fused together in a single three beta-sheet domain
b.1.25LEA14-like Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
d.281.1Hemolytic lectin CEL-III, C-terminal domain Hemolytic lectin CEL-III, C-terminal domain unusual fold
b.2.1Diphtheria toxin, C-terminal domain Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
b.127.1Baseplate structural protein gp8 Baseplate structural protein gp8 multisheet protein with a mixture of beta-sandwich and beta-barrel features
b.121.6Group I dsDNA viruses Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
b.1.19Antigen MPT63/MPB63 (immunoprotective extracellular protein) Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
f.6.1Leukocidin-like Leukocidin-like subunit fold contains beta-sandwich of Ig-like (grerk-key) topology and a beta-ribbon arm that forms an oligomeric transmembrane barrel
d.41.1CO dehydrogenase molybdoprotein N-domain-like alpha/beta-Hammerhead core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
b.1.23ApaG-like Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
b.85.2Head decoration protein D (gpD, major capsid protein D) beta-clip double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
b.2.9Peptidylarginine deiminase Pad4, middle domain Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
b.1.21Fungal immunomodulatory protein, FIP Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
b.117.1Obg GTP-binding protein N-terminal domain Obg-fold this fold is formed by three glycine-rich regions inserted into a small 8-stranded beta-sandwich ! these regions form six left-handed collagen-like helices packed and H-bonded together
f.47.1VP4 membrane interaction domain VP4 membrane interaction domain 2 domains; d1: complexed all-beta fold; d2: coiled-coil (trimeric) helical region