1. c.43.1 CoA-dependent acyltransferases
CoA-dependent acyltransferases core: 2 layers, a/b; mixed beta-sheet of 6 strands, order 324561; strands 3 & 6 are antiparallel to the rest
1t1u d1t1ua1 A:107-113,291-302,401-409,557-562
1q6x d1q6xa1 A:106-113,291-302,401-409,557-562
1q6x d1q6xb1 B:106-113,291-302,401-409,557-562
1ndi d1ndia1 A:118-125,299-311,407-415,561-566
1s5o d1s5oa1 A:97-104,278-290,386-394,540-545
1t7o d1t7oa1 A:118-125,299-311,407-415,561-566
1ndi d1ndib1 B:118-125,299-311,407-415,561-566
1t7n d1t7na1 A:118-125,299-311,407-415,561-566
1ndf d1ndfa1 A:118-125,299-311,407-415,561-566
1ndb d1ndbb1 B:118-125,299-311,407-415,561-566
2h3w d2h3wa1 A:118-125,299-311,407-415,561-566
2h3p d2h3pa1 A:118-125,299-311,407-415,561-566
2h3u d2h3ub1 B:118-125,299-311,407-415,561-566
2h3w d2h3wb1 B:118-125,299-311,407-415,561-566
1ndb d1ndba1 A:118-125,299-311,407-415,561-566
1t7q d1t7qb1 B:118-125,299-311,407-415,561-566
2h3p d2h3pb1 B:118-125,299-311,407-415,561-566
1ndf d1ndfb1 B:118-125,299-311,407-415,561-566
1nm8 d1nm8a1 A:97-104,278-290,386-394,540-545
1t7q d1t7qa1 A:118-125,299-311,407-415,561-566
2h3u d2h3ua1 A:118-125,299-311,407-415,561-566
2. f.4.3 Porins
Transmembrane beta-barrels not a true fold, gathers together transmembrane barrels of different (n,S)
1po3 d1po3a_ A:101-109,119-128,129-133,188-197
1kmp d1kmpa_ A:101-109,119-128,129-133,188-197
1po3 d1po3b_ B:101-109,119-128,129-133,188-197
2guf d2gufa1 A:25-30,41-49,51-56,105-114
3. c.23.16 Class I glutamine amidotransferase-like conserved positions of the oxyanion hole and catalytic nucleophile; different constituent families contain different additional structures !
Flavodoxin-like 3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
1fye d1fyea_ A:1-7,121-128,152-157,194-200
1fy2 d1fy2a_ A:2-7,121-128,152-157,194-200
1fye d1fyea_ A:1-7,121-128,186-191,194-200
1fy2 d1fy2a_ A:2-7,121-128,186-191,194-200
4. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1d9x d1d9xa1 A:158-163,168-180,213-220,239-244
2b2n d2b2nb1 B:127-132,137-149,160-166,207-212
2fdc d2fdcb1 B:158-163,168-180,209-218,239-244
2b2n d2b2na1 A:127-132,137-149,160-166,207-212
1t5l d1t5lb1 B:158-163,168-180,209-218,239-244
1d9z d1d9za1 A:158-163,168-180,214-220,239-244
2eyq d2eyqb4 B:127-132,137-149,160-166,207-212
1t5l d1t5la1 A:158-163,168-180,209-218,239-244
2b2n d2b2na1 A:127-132,137-149,179-186,207-212
2eyq d2eyqb4 B:127-132,137-149,179-186,207-212
2eyq d2eyqa4 A:127-132,137-149,179-186,207-212
5. b.29.1 Concanavalin A-like lectins/glucanases
Concanavalin A-like lectins/glucanases sandwich; 12-14 strands in 2 sheets; complex topology
1sll d1slla1 A:84-91,105-114,231-236,250-259
2sli d2slia1 A:84-91,105-114,231-236,250-259
1sli d1slia1 A:84-91,105-114,231-236,250-259
4sli d4slia1 A:84-91,105-114,231-236,250-259
3sli d3slia1 A:84-91,105-114,231-236,250-259
6. d.126.1 Pentein
Pentein, beta/alpha-propeller duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis
1wd9 d1wd9a3 A:304-312,376-386,388-393,647-652
7jdw d7jdwa_ A:76-80,191-207,208-213,409-413
2dw5 d2dw5a3 A:304-312,376-386,388-393,647-652
1wda d1wdaa3 A:304-311,376-386,388-393,647-652
2dew d2dewx3 X:304-311,376-386,388-393,647-652
2dey d2deyx3 X:304-311,374-386,388-393,647-652
7. c.91.1 PEP carboxykinase-like
PEP carboxykinase-like contains a P-loop NTP-binding motif; mixed beta-sheet folds into a barrel-like structure with helices packed on one side
1m51 d1m51a1 A:330-336,344-354,366-370,404-410
2gmv d2gmvb1 B:330-336,344-353,366-370,404-410
1khb d1khba1 A:330-336,344-354,366-370,404-410
1nhx d1nhxa1 A:330-336,344-353,366-370,404-410
1ii2 d1ii2b1 B:256-262,270-278,292-296,306-312
1j3b d1j3ba1 A:267-273,281-290,304-308,318-324
1j3b d1j3bb1 B:267-273,281-290,304-308,318-324
1xkv d1xkva1 A:267-273,281-290,304-308,318-324
2pc9 d2pc9b1 B:267-273,281-290,304-308,318-324
2pc9 d2pc9d1 D:267-273,281-290,304-308,318-324
1xkv d1xkvb1 B:267-273,281-290,304-308,318-324
8. c.47.1 Thioredoxin-like
Thioredoxin fold core: 3 layers, a/b/a; mixed beta-sheet of 4 strands, order 4312; strand 3 is antiparallel to the rest
1xvw d1xvwb1 B:30-38,98-105,105-110,115-123
1qxh d1qxhb_ B:46-54,111-119,119-123,132-140
2cx4 d2cx4f1 F:34-42,100-107,108-112,121-129
1xxu d1xxud1 D:30-38,98-105,106-110,115-123
1xxu d1xxuc1 C:30-38,98-105,106-110,115-123
1xvw d1xvwa1 A:30-38,98-105,106-110,115-123
2cx4 d2cx4d1 D:34-42,100-107,108-112,121-129
1xxu d1xxua1 A:30-38,98-105,106-110,115-123
1yf1 d1yf1h1 H:31-39,101-108,109-113,118-126
1yf1 d1yf1e1 E:31-39,101-108,109-113,118-126
2cx4 d2cx4e1 E:34-42,100-107,108-112,121-129
1yf1 d1yf1f1 F:31-39,101-108,109-113,118-126
2cx4 d2cx4h1 H:34-42,100-107,108-112,121-129
1n8j d1n8jn_ N:31-39,101-108,109-113,118-126
1n8j d1n8jh_ H:31-39,101-108,109-113,118-126
1yf1 d1yf1g1 G:31-39,101-108,109-113,118-126
1n8j d1n8jj_ J:31-39,101-108,109-113,118-126
1yex d1yexc1 C:31-39,101-108,109-113,118-126
1n8j d1n8ji_ I:31-39,101-108,109-113,118-126
1n8j d1n8jb_ B:31-39,101-108,109-113,118-126
1n8j d1n8jr_ R:31-39,101-108,109-113,118-126
1n8j d1n8jp_ P:31-39,101-108,109-113,118-126
1yf0 d1yf0a1 A:31-39,101-108,109-113,118-126
1zye d1zyel1 L:32-40,105-112,113-117,122-130
1n8j d1n8je_ E:31-39,101-108,109-113,118-126
1n8j d1n8jd_ D:31-39,101-108,109-113,118-126
1yf0 d1yf0c1 C:31-39,101-108,109-113,118-126
1n8j d1n8jg_ G:31-39,101-108,109-113,118-126
1yf0 d1yf0b1 B:31-39,101-108,109-113,118-126
1yf0 d1yf0d1 D:31-39,101-108,109-113,118-126
1yep d1yepc1 C:31-39,101-108,109-113,118-126
1yf1 d1yf1a1 A:31-39,101-108,109-113,118-126
1yf1 d1yf1b1 B:31-39,101-108,109-113,118-126
1yep d1yepb1 B:31-39,101-108,109-113,118-126
1n8j d1n8jm_ M:31-39,101-108,109-113,118-126
1zye d1zyed1 D:32-40,105-112,113-117,122-130
2cx3 d2cx3c1 C:34-42,100-107,108-112,121-129
1n8j d1n8jt_ T:31-39,101-108,109-113,118-126
2cx3 d2cx3b1 B:34-42,100-107,108-112,121-129
1yex d1yexe1 E:31-39,101-108,109-113,118-126
1yex d1yexb1 B:31-39,101-108,109-113,118-126
1n8j d1n8jo_ O:31-39,101-108,109-113,118-126
2cx3 d2cx3d1 D:34-42,100-107,108-112,121-129
1yex d1yexa1 A:31-39,101-108,109-113,118-126
1yf1 d1yf1i1 I:31-39,101-108,109-113,118-126
1zye d1zyea1 A:32-40,105-112,113-117,122-130
1zye d1zyek1 K:32-40,105-112,113-117,122-130
2cx3 d2cx3a1 A:34-42,100-107,108-112,121-129
1yex d1yexd1 D:31-39,101-108,109-113,118-126
1n8j d1n8jq_ Q:31-39,101-108,109-113,118-126
1n8j d1n8jc_ C:31-39,101-108,109-113,118-126
1n8j d1n8js_ S:31-39,101-108,109-113,118-126
1yep d1yepa1 A:31-39,101-108,109-113,118-126
2cx4 d2cx4b1 B:34-42,100-107,108-112,121-129
1zye d1zyeb1 B:32-40,105-112,113-117,122-130
1n8j d1n8jl_ L:30-39,101-108,109-113,118-126
1yf1 d1yf1j1 J:31-39,101-108,109-113,118-126
1n8j d1n8jk_ K:30-39,101-108,109-113,118-126
1yf1 d1yf1c1 C:31-39,101-108,109-113,118-126
1n8j d1n8ja_ A:30-39,101-108,109-113,118-126
1zye d1zyef1 F:31-40,105-112,113-117,122-130
2cx4 d2cx4c1 C:34-42,100-107,108-112,121-129
1yf1 d1yf1d1 D:30-39,101-108,109-113,118-126
2cx4 d2cx4a1 A:34-42,100-107,108-112,121-129
2cx4 d2cx4g1 G:34-42,100-107,108-112,121-129
1n8j d1n8jf_ F:30-39,101-108,109-113,118-126
1we0 d1we0c1 C:32-40,102-109,110-114,119-127
1we0 d1we0g1 G:31-40,102-109,110-114,119-127
1we0 d1we0i1 I:31-40,102-109,110-114,119-127
1we0 d1we0j1 J:31-40,102-109,110-114,119-127
1we0 d1we0e1 E:31-40,102-109,110-114,119-127
1we0 d1we0d1 D:31-40,102-109,110-114,119-127
1we0 d1we0a1 A:31-40,102-109,110-114,119-127
1we0 d1we0b1 B:31-40,102-109,110-114,119-127
1we0 d1we0h1 H:31-40,102-109,110-114,119-127
1q98 d1q98b_ B:44-52,109-117,118-122,130-138
1q98 d1q98a_ A:44-52,109-117,118-122,130-138
1tp9 d1tp9c1 C:34-44,106-113,114-118,128-136
1tp9 d1tp9d1 D:34-44,106-113,114-118,128-136
1tp9 d1tp9a1 A:34-44,106-113,114-118,128-136
1tp9 d1tp9b1 B:34-44,106-113,114-118,128-136
9. b.71.1 Glycosyl hydrolase domain this domain is C-terminal to the catalytic beta/alpha barrel domain !
Glycosyl hydrolase domain folded sheet; greek-key
1mw1 d1mw1a1 A:574-582,589-597,614-618,619-627
1zs2 d1zs2a1 A:574-582,589-597,614-618,619-627
1mw0 d1mw0a1 A:574-582,589-597,614-618,619-627
1mvy d1mvya1 A:574-582,589-597,614-618,619-627
1jgi d1jgia1 A:574-582,589-597,614-618,619-627
1mw3 d1mw3a1 A:574-581,589-597,614-619,620-627
1s46 d1s46a1 A:574-581,589-597,614-619,620-627
1mw2 d1mw2a1 A:574-581,589-597,614-619,620-627
1g5a d1g5aa1 A:574-581,589-597,614-619,620-627
1jg9 d1jg9a1 A:574-582,589-596,614-618,619-627
10. b.19.1 Viral protein domain forms homotrimers !
Viral protein domain sandwich; 9 strands in 2 sheets; jelly-roll; form trimers
1ahs d1ahsa_ A:156-165,169-176,230-236,238-251
2btv d2btvd2 D:157-165,170-178,230-236,238-253
2btv d2btvs2 S:157-165,170-179,230-235,238-253
2btv d2btvj2 J:157-165,170-180,230-236,238-253
2btv d2btvq2 Q:157-165,170-179,230-236,238-253
11. d.171.1 Fibrinogen C-terminal domain-like
Fibrinogen C-terminal domain-like unusual fold
1n86 d1n86f1 F:188-194,229-239,263-270,380-389
1n86 d1n86c1 C:188-194,229-239,263-270,380-389
12. e.7.1 Carbohydrate phosphatase
Carbohydrate phosphatase N-terminal domain is an alpha+beta, C-terminal domain is an alpha/beta with mixed beta-sheet
1rdz d1rdzb_ B:259-265,276-292,303-307,315-320
1nv6 d1nv6a_ A:1259-1265,1276-1292,1303-1307,1315-1320
1fpi d1fpib_ B:259-265,276-292,303-307,315-320
1fpd d1fpdb_ B:259-265,276-292,303-307,315-320
1fj6 d1fj6a_ A:259-265,276-292,303-307,315-320
2qvu d2qvub1 B:259-265,276-292,303-307,315-320
13. d.114.1 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain core: alpha-beta(2)-alpha-beta(2)-alpha-beta; 3 layers; mixed sheet: order 31425
1oid d1oidb1 B:432-439,439-453,473-481,490-496
1oie d1oiea1 A:433-439,439-454,473-481,490-496
1ush d1usha1 A:433-439,439-454,473-481,490-496
1ho5 d1ho5a1 A:432-439,439-454,473-481,490-496
1oi8 d1oi8a1 A:432-439,439-454,473-481,490-496
1hp1 d1hp1a1 A:432-439,439-454,473-481,490-496
1oi8 d1oi8b1 B:432-439,439-454,473-481,490-496
1oid d1oida1 A:432-439,439-454,473-481,490-496
1oid d1oida1 A:364-368,383-398,411-416,415-419
14. d.344.1 PriA/YqbF domain associated with known or presumed DNA-binding domains; this superfamily also includes the C-terminal domain of PriA (PDB entry 1zt2)
GINS/PriA/YqbF domain beta(4)-alpha-beta; 3-stranded antiparallel beta-sheet (strands 4,1 and 5) are covered on the same side by the helix and beta hairpin of strands 2 and 3; similarity to the L9 N-domain-like fold (scop_cf 55657) and the PsaD fold (scop_sf 64243)
2eho d2ehoh2 H:31-38,41-48,58-63,62-69
15. b.14.1 Calpain large subunit, middle domain (domain III)
Calpain large subunit, middle domain (domain III) sandwich; 8 strands in 2 sheets; jelly-roll
1kfx d1kfxl2 L:356-367,377-384,479-489,493-504
1u5i d1u5ia2 A:356-367,377-385,479-489,493-504
1kfu d1kful2 L:356-367,377-384,479-489,493-504
1df0 d1df0a2 A:356-367,377-384,479-489,493-504
1qxp d1qxpa3 A:356-366,377-385,480-490,495-505
16. i.9.1 Blood clotting
Blood clotting
1deq d1deqs_ S:187-194,229-239,263-270,380-389
1deq d1deqp_ P:187-194,229-239,263-270,380-389
1deq d1deqf_ F:187-194,229-239,263-270,380-389
17. e.52.1 NAD kinase/diacylglycerol kinase-like
NAD kinase/diacylglycerol kinase-like 2 domains: d1 [alpha/beta; related to the PFK N-terminal domain (scop_sf 53784)]; d2 [all-beta; atypical beta-sandwich made of 4 structural repeats of beta(3) unit]
2bon d2bona1 A:137-143,159-171,171-176,264-269
18. d.37.1 CBS-domain pair
CBS-domain pair duplication: tandem repeat of two beta-X-beta-alpha-beta(2)-alpha motifs of similar sequences; 4 layers: a/b/b/a
2ef7 d2ef7b1 B:10-14,22-34,37-43,108-115
19. d.273.1 YjbQ-like
YjbQ-like beta(2)-alpha-beta(2)-alpha(2)-beta(3); contains a beta-sandwich: 7 strands in 2 sheets; trimerizes with orthogonally packed beta-sheets
1vmh d1vmha_ A:4-15,20-32,111-120,122-132
1xbf d1xbfb_ B:4-13,20-32,111-120,122-133
1xbf d1xbfc_ C:4-15,20-32,111-120,122-133
1vph d1vpha_ A:2-14,21-33,113-122,125-136
1vph d1vphd_ D:2-14,21-33,113-122,125-136
1vph d1vphb_ B:2-14,21-33,113-122,125-136
1vph d1vphc_ C:2-14,20-33,113-122,125-136
1vph d1vphe_ E:2-14,20-33,113-122,125-136
1vmj d1vmja_ A:2-12,20-33,118-125,127-138
20. d.41.4 Ribosomal protein L16p/L10e
alpha/beta-Hammerhead core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
1wki d1wkia_ A:37-43,43-59,63-67,94-100
2pa2 d2pa2b1 B:55-61,61-81,85-90,126-132
2pa2 d2pa2a1 A:55-61,61-81,85-90,126-132
3ccv d3ccvh1 H:55-61,61-81,86-91,121-133
3cc7 d3cc7h1 H:55-61,61-81,86-91,121-133
1vq9 d1vq9h1 H:52-58,58-78,83-88,118-130
1vq4 d1vq4h1 H:52-58,58-78,83-88,118-130
3ccs d3ccsh1 H:55-61,61-81,86-91,121-133
3ccu d3ccuh1 H:55-61,61-81,86-91,121-133
2otj d2otjh1 H:52-58,58-78,83-88,118-130
3ccl d3cclh1 H:55-61,61-81,86-91,121-133
3ccq d3ccqh1 H:55-61,61-81,86-91,121-133
3cd6 d3cd6h1 H:55-61,61-81,86-91,121-133
1yit d1yith1 H:55-61,61-81,86-91,121-133
1vqo d1vqoh1 H:52-58,58-78,83-88,118-130
3ccm d3ccmh1 H:55-61,61-81,86-91,121-133
3cme d3cmeh1 H:55-61,61-81,86-91,121-133
3cpw d3cpwh1 H:52-58,58-78,83-88,118-130
3cce d3cceh1 H:55-61,61-81,86-91,121-133
1vqm d1vqmh1 H:52-58,58-78,83-88,118-130
3cc4 d3cc4h1 H:55-61,61-81,86-91,121-133
1vqk d1vqkh1 H:52-58,58-78,83-88,118-130
1vqn d1vqnh1 H:52-58,58-78,83-88,118-130
3cma d3cmah1 H:55-61,61-81,86-91,121-133
3ccj d3ccjh1 H:55-61,61-81,86-91,121-133
3ccr d3ccrh1 H:55-61,61-81,86-91,121-133
21. b.121.4 Positive stranded ssRNA viruses
Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
1ev1 d1ev1.1 2:61-71,81-89,218-226,239-254
1cov d1cov.1 2:61-71,81-89,220-228,241-256
1mqt d1mqt.1 B:61-71,81-89,218-226,239-254
1oop d1oop.1 B:61-71,81-89,218-226,239-254
1upn d1upn.1 B:61-71,81-89,218-226,239-254
1h8t d1h8t.1 B:1061-1071,1081-1089,1218-1226,1239-1254
1c8m d1c8m.1 2:61-71,81-89,218-226,238-253
1bev d1bev.1 2:61-71,81-89,203-211,224-239
1nd2 d1nd2.1 B:61-71,81-89,218-226,238-253
1ncr d1ncr.1 B:61-71,81-89,218-226,238-253
1aym d1aym.1 2:61-71,81-89,218-226,238-253
1nd3 d1nd3.1 B:61-71,81-89,218-226,238-253
1qjy d1qjy.1 2:61-71,81-89,218-226,238-253
1ayn d1ayn.1 2:61-71,81-89,218-226,238-253
1qju d1qju.1 2:61-71,81-89,218-226,238-253
1rhi d1rhi.1 2:61-72,81-89,217-225,237-253
1qjx d1qjx.1 2:61-71,81-89,218-226,238-253
1k5m d1k5m.1 B:1361-1372,1381-1389,1532-1540,1552-1568
1d4m d1d4m.1 2:61-72,81-89,218-226,238-254
1fpn d1fpn.1 2:61-72,81-89,220-228,239-255
1vba d1vba.1 2:61-72,81-89,225-233,245-261
1pvc d1pvc.1 2:61-72,81-89,225-233,245-261
1ar7 d1ar7.1 2:61-72,81-89,226-234,246-262
1auy d1auya_ A:30-44,56-66,149-159,168-183
1piv d1piv.1 2:61-72,81-89,225-233,245-261
1al2 d1al2.1 2:61-72,81-89,226-234,246-262
1ar9 d1ar9.1 2:61-72,81-89,226-234,246-262
1ar6 d1ar6.1 2:61-72,81-89,226-234,246-262
1asj d1asj.1 2:61-72,81-89,226-234,246-262
2plv d2plv.1 2:61-72,81-89,226-234,246-262
1po2 d1po2.1 2:61-72,81-89,226-234,246-262
1vbd d1vbd.1 2:61-72,81-89,226-234,246-262
1hxs d1hxs.1 2:61-72,81-89,226-234,246-262
1po1 d1po1.1 2:61-72,81-89,226-234,246-262
1ar8 d1ar8.1 2:61-72,81-89,226-234,246-262
1vbe d1vbe.1 2:61-73,81-89,225-233,244-261
1vbb d1vbb.1 2:61-73,81-89,225-233,244-261
1pov d1pov0_ 0:130-142,150-158,295-303,314-332
1qjz d1qjzb_ B:31-44,57-67,151-155,169-184
1eah d1eah.1 2:61-72,81-89,225-234,245-261
22. i.6.1 Viruses and virus-receptor complexes
Viruses and virus-receptor complexes
1m11 d1m112_ 2:61-71,81-89,218-226,239-254
1jew d1jew2_ 2:61-71,81-89,220-228,241-256
1d3e d1d3e2_ 2:61-71,81-89,218-226,238-253
1nn8 d1nn82_ 2:61-72,81-89,226-234,246-262
1dgi d1dgi2_ 2:61-72,81-89,226-234,246-262
23. d.169.1 C-type lectin-like
C-type lectin-like unusual fold
1t8d d1t8da1 A:17-25,28-40,67-71,123-131
1iod d1ioda_ A:11-21,22-35,69-73,122-129
1jwi d1jwia_ A:13-20,24-36,69-73,121-127
1v4l d1v4la_ A:13-23,24-37,71-75,124-132
1uex d1uexa_ A:20-24,24-36,69-73,119-127
1ijk d1ijkb_ B:11-18,22-35,70-74,122-131
1u0n d1u0nb1 B:1011-1018,1022-1035,1070-1074,1122-1132
1sb2 d1sb2b1 B:13-20,24-37,71-75,119-127
1uex d1uexa_ A:13-20,24-36,69-73,119-127
1ja3 d1ja3b_ B:148-156,159-171,198-202,246-257
1fvu d1fvua_ A:11-18,22-35,70-74,122-132
1ijk d1ijkb_ B:18-22,22-35,70-74,122-131
1u0n d1u0nb1 B:1018-1022,1022-1035,1070-1074,1122-1132
3c8k d3c8kd1 D:148-159,159-171,198-203,247-257
3c8j d3c8jb1 B:148-159,159-171,198-204,247-257
3c8j d3c8ja1 A:148-159,159-171,198-204,247-257
3c8j d3c8jc1 C:148-156,159-171,198-204,249-257
1fvu d1fvuc_ C:218-222,222-235,270-274,322-331
1p4l d1p4ld_ D:148-156,159-171,198-203,249-257
1fm5 d1fm5a_ A:94-101,105-117,144-149,188-198
1e8i d1e8ib_ B:94-101,105-117,144-149,188-198
1e87 d1e87a_ A:94-101,105-117,144-149,188-198
1fvu d1fvua_ A:18-22,22-35,70-74,122-132
1e8i d1e8ia_ A:94-101,105-117,144-149,188-198
1p1z d1p1zd_ D:151-159,162-174,201-206,248-260
1p4l d1p4ld_ D:156-160,159-171,198-203,245-249
1qo3 d1qo3d_ D:148-155,159-171,198-203,247-257
1v4l d1v4lc_ C:13-20,24-37,71-76,125-132
1v4l d1v4le_ E:13-20,24-37,71-76,125-132
3c8j d3c8jd1 D:148-155,159-171,198-204,249-257
1g1r d1g1rb1 B:1-7,11-24,52-57,111-120
1e8i d1e8ib_ B:101-105,105-117,144-149,188-198
1qo3 d1qo3d_ D:155-159,159-171,198-203,247-257
1e8i d1e8ia_ A:101-105,105-117,144-149,188-198
1qo3 d1qo3c_ C:148-155,159-171,198-204,246-257
1kcg d1kcgb_ B:108-115,119-131,156-161,205-215
1fm5 d1fm5a_ A:101-105,105-117,144-149,188-198
1e87 d1e87a_ A:101-105,105-117,144-149,188-198
1jsk d1jskb_ B:124-131,135-147,172-178,223-231
1g1r d1g1rb1 B:7-11,11-24,52-57,111-120
1qo3 d1qo3c_ C:155-159,159-171,198-204,246-257
1kcg d1kcgb_ B:115-119,119-131,156-161,205-215
1h8u d1h8ua_ A:3-8,12-25,55-60,111-117
1h8u d1h8ub_ B:3-8,12-25,55-60,111-117
2brs d2brsa1 A:3-8,12-25,55-60,111-117
2brs d2brsb1 B:3-8,12-25,55-60,111-117
1hyr d1hyra_ A:108-115,119-131,156-162,205-215
1hyr d1hyrb_ B:108-118,119-131,156-162,206-215
1hyr d1hyra_ A:115-119,119-131,156-162,205-215
24. d.316.1 MK0786-like probable biological unit is a teramer; all subunit interfaces are provided by helices !
MK0786-like alpha(2)-beta(4); 2 layers: a/b; antiparallel beta-sheet, order 1234 (meander)
2iec d2iecb1 B:34-38,38-57,58-67,79-83
25. d.164.1 SMAD MH1 domain
SMAD MH1 domain consists of four alpha-helices and three beta-ribbons
1ozj d1ozjb_ B:65-69,83-95,102-106,118-122
1mhd d1mhda_ A:65-69,83-95,102-106,118-122
1mhd d1mhdb_ B:65-69,83-95,102-106,118-122
1ozj d1ozja_ A:65-69,83-95,102-106,118-122
26. c.56.5 Zn-dependent exopeptidases core: mixed beta-sheet of 8 strands, order 12435867; strands 2, 6 & 7 are antiparallel to the rest !
Phosphorylase/hydrolase-like core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
1vho d1vhoa2 A:162-167,168-189,219-228,309-314
1ylo d1ylod2 D:158-163,164-184,215-224,310-315
1ylo d1yloe2 E:158-163,164-184,215-224,310-315
1ylo d1yloc2 C:158-163,164-184,215-224,310-315
1ylo d1yloa2 A:158-163,164-184,215-224,310-315
1ylo d1ylob2 B:158-163,164-184,215-224,310-315
1ylo d1ylof2 F:158-163,164-184,215-224,310-315
27. b.82.1 RmlC-like cupins
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1qwr d1qwrb_ B:5-9,60-69,81-91,291-298
1qwr d1qwra_ A:5-9,60-69,81-91,292-298
28. c.76.1 Alkaline phosphatase-like
Alkaline phosphatase-like core:3 layers: a/b/a; mixed beta-sheet of 8 strands, order 43516728, strand 7 is antiparallel to the rest
1hjk d1hjka_ A:80-85,101-112,369-373,416-423
29. b.121.5 ssDNA viruses
Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
1cd3 d1cd3f_ F:9-23,102-110,278-291,401-415
30. b.2.5 p53-like transcription factors
Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
3brf d3brfa2 A:214-223,247-263,352-367,535-551
1ttu d1ttua2 A:214-223,247-262,352-367,535-551
3brd d3brda2 A:214-223,247-263,352-367,535-551
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 119 (enumeration index: query47) of S4
2nmv A:158-163,168-180,209-218,239-244
2faf B:349-355,363-373,385-389,423-429
2qf2 A:330-336,344-354,366-370,404-410
2qf2 B:330-336,344-354,366-370,404-410
1z7s 1:80-90,92-101,233-240,247-260
1z7s 2:61-73,81-89,226-234,245-262
2jz7 A:20-29,32-48,50-54,65-73
2jz7 E:20-29,32-48,50-54,65-73
3kmp A:65-69,83-95,102-106,118-122
3kmp B:65-69,83-95,102-106,118-122
2rka C:330-336,344-353,366-370,404-410
2rka A:330-336,344-353,366-370,404-410
3g4s H:55-61,61-81,86-91,121-133
3g8l D:151-158,162-174,201-206,252-260
3g8l B:151-159,162-174,201-205,252-260
3g8l C:151-158,162-174,201-205,252-260
2wdf A:442-449,449-466,496-503,512-518
2fy2 A:97-103,281-292,391-399,547-552
3p8p A:14-22,101-113,114-119,276-280
2cu5 B:4-13,18-28,109-117,119-129
2cu5 A:4-13,18-28,109-117,119-129
2cu5 C:4-13,18-28,109-117,117-129
1x9t A:246-251,253-260,260-264,270-275
2h4t A:131-138,334-345,441-449,596-602
2h4t B:131-138,334-345,441-449,596-602
3py9 A:142-147,153-165,165-174,190-195
2c9f D:246-251,253-260,260-264,270-275
2c9f B:246-251,253-260,260-264,270-275
2c9f C:246-251,253-260,260-264,270-275
2c9f E:246-251,253-260,260-264,270-275
2c9f A:246-251,253-260,260-264,270-275
2fy3 A:96-103,281-292,391-399,547-552
3ff8 D:91-95,95-107,134-138,178-188
3ff8 C:84-91,95-107,134-138,178-186
3ff8 C:91-95,95-107,134-138,178-186
3ff8 D:84-91,95-107,134-138,178-188
3rqv G:93-98,116-123,124-136,164-169
3rqv F:93-98,116-123,124-136,164-169
3rqv Q:93-98,116-123,124-136,164-169
3rqv O:93-98,116-123,124-136,164-169
3rqv C:93-98,116-123,124-136,164-169
3rqv H:93-98,116-123,124-136,164-169
3rqv V:93-98,116-123,124-136,164-169
3rqv X:93-98,116-123,124-136,164-169
3rqv K:93-98,116-123,124-136,164-169
3rqv U:93-98,116-123,124-136,164-169
3rqv Y:93-98,116-123,124-136,164-169
3rqv R:93-98,116-123,124-136,164-169
3rqv M:93-98,116-123,124-136,164-169
3rqv A:93-98,116-123,124-136,164-169
3rqv B:93-98,116-123,124-136,164-169
3rqv Z:93-98,116-123,124-136,164-169
3rqv I:93-98,116-123,124-136,164-169
3rqv L:93-98,116-123,124-136,164-169
3rqv D:93-98,116-123,124-136,164-169
3rqv J:93-98,116-123,124-136,164-169
3rqv T:93-98,116-123,124-136,164-169
3rqv C:93-98,116-123,124-136,164-169
3rqv B:93-98,116-123,124-136,164-169
3rqv N:93-98,116-123,124-136,164-169
3rqv D:93-98,116-123,124-136,164-169
3rqv S:93-98,116-123,124-136,164-169
3rqv A:93-98,116-123,124-136,164-169
3rqv W:93-98,116-123,124-136,164-169
3rqv P:93-98,116-123,124-136,164-169
3rqv E:93-98,116-123,124-136,164-169
3hjh A:127-132,137-149,160-166,207-212
3hjh A:127-132,137-149,179-186,207-212
3hvs B:45-54,111-119,119-123,132-140
3hvs A:46-54,111-119,119-123,132-140
3mof A:330-336,344-353,366-370,404-410
3fot A:51-62,133-149,275-285,455-470
2rk7 B:330-336,344-353,366-370,404-410
2rk7 A:330-336,344-353,366-370,404-410
3izo A:246-251,253-260,260-264,270-275
3izo B:246-251,253-260,260-264,270-275
3izo E:246-251,253-260,260-264,270-275
3izo D:246-251,253-260,260-264,270-275
3izo C:246-251,253-260,260-264,270-275
3qsv A:72-76,90-102,108-112,124-128
3qsv B:72-76,90-102,108-112,124-128
3qsv D:72-76,90-102,108-112,124-128
3qsv C:72-76,90-102,108-112,124-128
2vw0 A:41-47,57-65,184-189,206-212
2w8j A:348-354,356-371,371-375,387-393
3df0 A:355-367,377-384,479-489,493-505
3pow A:20-26,29-38,308-322,324-334
3b1t A:304-313,376-386,388-393,647-652
3cze A:179-183,195-203,229-235,247-251
2cxi B:139-147,183-196,198-205,229-238
2cxi C:139-147,183-196,198-205,229-238
2cxi A:139-147,183-196,198-205,229-238
2deb A:131-138,334-345,441-449,596-602
2deb B:131-138,334-345,441-449,596-602
3epd 2:61-72,81-89,225-233,245-261
3epf 2:61-72,81-89,225-234,245-261
3fpn B:158-163,168-180,211-218,239-244
3ddr B:122-127,138-146,148-152,202-212
3ddr A:122-127,138-146,148-152,202-212
2vuv A:11-18,22-34,67-72,120-128
2rkd A:330-336,344-353,366-370,404-410
3hvv A:46-54,111-119,119-123,132-140
3fwm A:101-115,120-132,167-176,193-206
2fyo A:131-137,334-345,441-449,597-602
2d16 C:1-9,63-78,81-89,115-124
2d16 A:1-9,63-78,81-89,115-124
2d16 D:2-9,63-78,80-89,115-124
2d16 B:2-9,63-78,81-89,115-124
2xpd D:46-54,111-119,119-123,132-140
2xpd B:45-54,111-119,119-123,132-140
2xpd F:45-54,111-119,119-123,132-140
2xpd E:45-54,111-119,118-123,132-140
2xpd C:46-54,111-119,119-123,132-140
2fy4 A:96-103,281-292,391-399,547-552
2h2t B:172-183,183-195,222-226,278-286
3gwm A:2-12,44-68,83-89,119-129
1ve0 A:2-14,20-30,111-120,122-133
3dtb A:330-336,344-353,366-370,404-410
3dtb B:330-336,344-353,366-370,404-410
2hji A:72-78,82-95,139-143,149-156
2fah A:349-355,363-372,385-389,423-429
2fah B:349-355,363-372,385-389,423-429
2fah C:349-355,363-372,385-389,423-429
2fah D:349-355,363-372,385-389,423-429
3i43 B:45-54,111-119,119-123,132-140
3i43 A:46-54,111-119,119-123,132-140
3o0w A:19-26,29-38,308-322,324-335
2fy5 A:96-103,281-292,391-399,547-552
3iyb 4:130-142,150-158,295-303,314-332
3hvx B:46-54,111-119,119-123,132-140
3hvx A:46-54,111-119,119-123,132-140
3hvx C:46-54,111-119,119-124,132-140
3hvx D:46-54,111-119,119-123,132-140
2z9s F:36-45,110-117,118-122,127-135
2z9s I:37-44,110-117,118-122,127-135
3fp0 A:51-62,133-149,272-285,455-470
3epc 2:61-72,81-89,226-234,246-262
2qey A:330-336,344-353,366-370,404-410
2d7d A:158-163,168-180,210-218,239-244
2yhf E:87-91,91-103,130-136,177-187
2yhf H:87-91,91-103,130-136,177-187
2yhf C:87-91,91-103,130-136,177-187
2yhf D:80-87,91-103,130-135,177-187
2yhf F:87-91,91-103,130-136,177-187
2yhf I:87-91,91-103,130-136,177-187
2yhf G:87-91,91-103,130-136,177-187
2yhf D:87-91,91-103,130-135,177-187
3dt2 A:330-336,344-354,366-370,404-410
2rcu A:131-138,334-345,441-449,596-602
2rcu B:131-138,334-345,441-449,596-602
2qzy B:349-355,363-372,385-389,423-429
3moe A:330-336,344-353,366-370,404-410
3pos B:20-26,29-38,307-322,324-334
3ff9 B:84-91,95-107,134-138,178-188
3ff9 B:91-95,95-107,134-138,178-188
3ff9 A:91-95,95-107,134-138,178-188
3ff9 A:84-91,95-107,134-138,178-188
2wdd A:442-449,449-466,496-503,512-518
3oru A:35-41,142-155,197-207,221-231
3l4g N:156-164,204-215,219-226,249-258
3l4g L:156-164,204-215,219-226,249-258
3l4g B:156-164,204-215,219-226,249-258
3l4g P:156-164,204-215,219-226,249-258
3l4g D:156-164,204-215,219-226,249-258
3l4g J:156-164,204-215,219-226,249-258
3l4g F:156-164,204-215,219-226,249-258
3l4g H:156-164,204-215,219-226,249-258
2bld D:246-251,253-260,260-264,270-275
2bld B:246-251,253-260,260-264,270-275
2bld C:246-251,253-260,260-264,270-275
2bld E:246-251,253-260,260-264,270-275
2bld A:246-251,253-260,260-264,270-275
2vld B:3-9,11-26,96-108,108-114
2vld A:3-9,11-26,96-108,108-114
3acl A:4-13,30-37,38-48,214-221
3emp E:31-39,101-108,109-113,118-126
3emp D:30-39,101-108,109-113,118-126
3emp B:31-39,101-108,109-113,118-126
3emp C:31-39,101-108,109-113,118-126
3emp A:31-39,101-108,109-113,118-126
2ogf C:38-44,43-62,63-72,76-82
2ogf A:38-44,43-61,63-72,76-82
2ogf D:38-44,43-62,63-72,76-82
2ogf B:38-44,43-62,63-72,76-82
3som B:99-104,116-125,127-131,157-167
3som G:99-104,116-125,127-131,157-167
3som H:99-104,116-125,127-131,157-167
3som N:99-104,116-125,127-131,157-167
3som J:99-104,116-125,127-131,157-167
3som I:99-104,116-125,127-131,157-167
3som A:99-104,116-125,127-131,157-167
3som D:99-104,116-125,127-131,157-167
3som P:99-104,116-125,127-131,157-167
3som F:99-104,116-125,127-131,157-167
3som L:99-104,116-125,127-131,157-167
3som M:99-104,116-125,127-131,157-167
3som E:99-104,116-125,127-131,157-167
3som O:99-104,116-125,127-131,157-167
3som K:99-104,116-125,127-131,157-167
3som C:99-104,116-125,127-131,157-167
1yyz A:259-265,276-292,303-307,315-320
2vuz A:11-18,22-34,67-72,120-128
2qf1 A:330-336,344-354,366-370,404-410
2rk8 B:330-336,344-353,366-370,404-410
2rk8 A:330-336,344-353,366-370,404-410
3l6s A:266-271,272-292,349-359,453-458
2wpg A:180-184,196-204,230-236,248-252
3dt4 A:330-336,344-354,366-370,404-410
3dt4 C:330-336,344-354,366-370,404-410
2j63 A:128-139,209-217,268-277,438-446
2j63 B:128-139,209-217,268-277,438-446
3iyc 4:130-142,150-158,295-303,314-332
2qew A:330-336,344-353,366-370,404-410
2jkb A:41-47,57-66,184-189,206-212
2glf D:243-248,249-266,322-331,429-434
2glf D:243-248,249-266,414-423,429-434
2glf D:243-248,249-266,352-357,429-434
2c6s F:247-251,253-260,260-264,270-274
2c6s K:247-251,253-260,260-264,270-274
2c6s E:247-251,253-260,260-264,270-274
2c6s N:247-251,253-260,260-264,270-274
2c6s G:247-251,253-260,260-264,270-274
2c6s A:247-251,253-260,260-264,270-274
2c6s B:247-251,253-260,260-264,270-274
2c6s I:247-251,253-260,260-264,270-274
2c6s H:247-251,253-260,260-264,270-274
2c6s J:247-251,253-260,260-264,270-274
2c6s D:247-251,253-260,260-264,270-274
2c6s M:247-251,253-260,260-264,270-274
2c6s C:247-251,253-260,260-264,270-274
2c6s O:247-251,253-260,260-264,270-274
3s4g A:93-98,116-123,124-136,164-169
3g71 H:55-61,61-81,86-91,121-133
2rke A:330-336,344-353,366-370,404-410
2p6h A:1-14,18-31,111-120,122-133
2p6h B:1-14,18-31,111-120,122-133
3bow A:355-367,377-384,479-489,493-505
3g6e H:55-61,61-81,86-91,121-133
3ff7 D:91-95,95-107,134-138,178-186
3i55 H:55-61,61-81,86-91,121-133
3k07 A:681-688,689-708,718-729,818-828
2v73 A:7-13,25-35,142-147,161-172
2v73 B:7-13,25-35,142-147,161-171
2p6c A:2-12,20-33,115-123,125-136
2p6c B:2-12,20-33,115-123,125-136
3gmg A:166-174,180-195,227-231,232-240
3gmg B:166-174,180-195,227-231,232-240
1x9p A:246-251,253-260,260-264,270-275
3sc0 A:98-104,116-125,127-131,157-167
3l4e A:2-8,120-127,155-160,189-196
3dt7 B:330-336,344-353,366-370,404-410
3dt7 A:330-336,344-353,366-370,404-410
2fw3 A:131-138,334-345,441-449,596-602
2vw2 A:41-47,57-66,184-189,206-212
2c9g D:246-251,253-260,260-264,270-275
2c9g C:246-251,253-260,260-264,270-275
2c9g B:246-251,253-260,260-264,270-275
2c9g A:246-251,253-260,260-264,270-275
2c9g E:246-251,253-260,260-264,270-275
2wfc D:57-67,129-136,137-143,151-159
2wfc A:57-67,129-136,137-143,151-159
3keb A:47-55,114-122,123-127,135-143
3keb C:47-55,115-122,122-127,135-143
3keb B:47-55,115-122,122-127,135-143
3keb D:47-55,114-122,123-127,135-143
2vw1 A:41-47,57-66,184-189,206-212
3moh A:330-336,344-353,366-370,404-410
3moh B:330-336,344-353,366-370,404-410
1vtz 7:93-98,116-123,124-136,164-169
1vtz 5:93-98,116-123,124-136,164-169
1vtz 3:93-98,116-123,124-136,164-169
1vtz I:93-98,116-123,124-136,164-169
1vtz J:93-98,116-123,124-136,164-169
1vtz 0:93-98,116-123,124-136,164-169
1vtz L:93-98,116-123,124-136,164-169
1vtz 6:93-98,116-123,124-136,164-169
1vtz Q:93-98,116-123,124-136,164-169
1vtz 4:93-98,116-123,124-136,164-169
1vtz R:93-98,116-123,124-136,164-169
1vtz E:93-98,116-123,124-136,164-169
1vtz U:93-98,116-123,124-136,164-169
1vtz T:93-98,116-123,124-136,164-169
1vtz Z:93-98,116-123,124-136,164-169
1vtz G:93-98,116-123,124-136,164-169
1vtz P:93-98,116-123,124-136,164-169
1vtz W:93-98,116-123,124-137,164-169
1vtz N:93-98,116-123,124-136,164-169
1vtz M:93-98,116-123,124-136,164-169
1vtz S:93-98,116-123,124-136,164-169
1vtz X:93-98,116-123,124-136,164-169
1vtz 2:93-98,116-123,124-136,164-169
1vtz O:93-98,116-123,124-136,164-169
1vtz H:93-98,116-123,124-136,164-169
1vtz 1:93-98,116-123,124-136,164-169
1vtz Y:93-98,116-123,124-136,164-169
1vtz V:93-98,116-123,124-136,164-169
1vtz F:93-98,116-123,124-136,164-169
1vtz K:93-98,116-123,124-136,164-169
3ne1 B:2-12,44-68,82-89,119-130
3o0x A:19-26,29-38,308-322,324-335
3o0x B:19-26,29-38,307-322,324-335
3kqg D:211-215,215-227,254-258,313-323
3kqg D:204-211,215-227,254-258,313-323
3kqg A:211-215,215-227,254-259,313-323
3kqg A:204-211,215-227,254-259,313-323
2c8i B:61-71,81-89,218-226,239-254
2oyh F:188-194,229-239,263-270,380-389
1z7z 2:61-73,81-89,226-234,245-262
1z7z 1:80-90,92-101,233-240,247-260
2hod F:188-198,229-239,263-269,380-389
2hod L:188-198,229-239,263-269,380-389
1xyr 2:61-72,81-89,226-234,246-262
2hpc C:189-198,229-239,263-269,380-389
2hpc I:189-198,229-239,263-269,380-389
2oyi F:188-194,229-239,263-270,380-389