1. c.26.2 Adenine nucleotide alpha hydrolases-like share similar mode of ligand (Adenosine group) binding ! can be subdivided into two group with closer relationships within each group than between the groups; the first three families form one group whereas the last two families form the other group !
Adenine nucleotide alpha hydrolase-like core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
1o95 d1o95e_ E:96-112,114-120,145-151,177-183
1o95 d1o95c_ C:96-112,114-120,145-151,177-183
3clu d3cluc1 C:96-112,114-120,145-151,177-183
1o94 d1o94e_ E:96-112,114-120,145-151,177-183
1o94 d1o94c_ C:96-112,114-120,145-151,177-183
1o97 d1o97c_ C:96-112,114-120,145-151,177-183
1o96 d1o96q_ Q:96-112,114-120,145-151,177-183
1o96 d1o96c_ C:96-112,114-120,145-151,177-183
1o96 d1o96a_ A:96-112,114-120,145-151,177-183
1efv d1efvb_ B:100-116,118-124,152-157,178-184
2a1u d2a1ub1 B:100-116,118-124,152-157,178-184
1t9g d1t9gs_ S:100-116,118-124,152-157,178-184
1efp d1efpb_ B:97-113,115-121,149-154,175-181
1efp d1efpd_ D:97-113,115-121,149-154,175-181
1efp d1efpa1 A:69-84,85-91,114-119,142-148
3clu d3clud1 D:71-87,89-95,118-125,150-156
1o96 d1o96d1 D:71-87,89-95,118-125,150-156
3clt d3cltd1 D:71-87,89-95,118-125,150-156
1o96 d1o96b1 B:71-87,89-95,118-125,150-156
3cls d3clsd1 D:71-87,89-95,118-125,150-156
3clr d3clrd1 D:71-87,89-95,118-125,150-156
1o97 d1o97d1 D:71-87,89-95,118-125,150-156
1o94 d1o94d_ D:71-87,89-95,118-125,150-156
1o94 d1o94f_ F:71-87,89-95,118-125,150-156
1o96 d1o96f1 F:71-87,89-95,118-125,150-156
1o96 d1o96z1 Z:71-87,89-95,118-125,150-156
2. c.40.1 Methylesterase CheB, C-terminal domain
Methylesterase CheB, C-terminal domain 3 layers: a/b/a, parallel beta-sheet of 7 strands, order 3421567
1a2o d1a2oa2 A:166-178,183-190,216-220,223-228
1chd d1chda_ A:166-178,184-190,216-220,223-228
3. b.81.1 Trimeric LpxA-like enzymes superhelical turns are made of three short strands; duplication: the sequence hexapeptide repeats correspond to individual strands !
Single-stranded left-handed beta-helix superhelix turns are made of parallel beta-strands and (short) turns
1yp4 d1yp4b1 B:283-296,362-369,389-394,398-405
1yp2 d1yp2b1 B:283-296,362-369,390-394,398-405
1yp3 d1yp3d1 D:283-296,362-369,390-394,398-405
1yp3 d1yp3c1 C:283-296,362-369,389-394,398-405
1yp3 d1yp3b1 B:283-296,362-369,390-394,398-405
1yp4 d1yp4c1 C:283-296,362-369,390-394,398-405
1yp4 d1yp4a1 A:283-296,362-369,390-394,398-405
1yp3 d1yp3a1 A:283-296,362-369,390-394,398-405
4. b.97.1 Cytolysin/lectin some topological similarity to osmotin !
Cytolysin/lectin sandwich, 10 strands in 2 sheets;
1iaz d1iazb_ B:15-27,31-40,97-108,168-179
1iaz d1iaza_ A:15-27,31-41,97-108,168-178
1o71 d1o71a_ A:13-25,29-39,95-106,165-175
1o72 d1o72a_ A:13-25,29-39,95-106,165-175
1o71 d1o71b_ B:13-25,29-39,95-106,165-175
1o72 d1o72b_ B:13-25,29-39,95-106,165-175
1gwy d1gwyb_ B:13-25,29-39,95-106,165-175
1gwy d1gwya_ A:13-25,29-39,95-106,165-175
1tzq d1tzqa_ A:15-27,31-41,97-108,168-178
1kd6 d1kd6a_ A:15-27,32-42,97-108,169-179
5. e.2.1 Replication terminator protein (Tus)
Replication terminator protein (Tus) contains a cluster of helices and a beta-sandwich
2ewj d2ewja1 A:62-76,93-103,250-255,256-265
2i05 d2i05a1 A:62-77,93-103,250-255,256-265
1ecr d1ecra_ A:62-77,93-102,248-255,256-264
2ewj d2ewja1 A:62-76,93-103,166-181,256-265
1ecr d1ecra_ A:62-77,93-102,166-182,256-264
2i05 d2i05a1 A:62-77,93-103,167-181,256-265
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 169 (enumeration index: query53) of S4
2zyi A:337-348,356-361,449-458,463-470
2zyi B:337-348,356-361,449-458,463-470
2zys A:337-348,356-361,449-458,463-470
3bxy A:56-71,108-113,119-125,124-131
3a9g A:174-181,207-213,237-244,247-252
3eg4 A:61-76,121-127,127-132,137-144
3eg4 A:61-76,115-120,127-132,131-138
3a9h A:174-181,207-213,237-244,247-252
2l2b A:13-25,29-37,95-105,165-175
3lim A:15-27,31-41,97-108,168-178
3lim F:15-27,31-41,97-108,168-178
3lim D:15-27,31-41,97-108,168-178
3lim B:15-27,31-41,97-108,168-178
3lim C:15-27,31-41,97-108,168-178
3lim E:15-27,31-41,97-108,168-178
2zyr A:337-348,356-361,449-458,463-470
2zyr B:337-348,356-361,449-458,463-470
3ih5 A:72-88,90-96,120-131,162-168
3ih5 C:72-88,90-96,120-131,162-168
3ih5 D:72-88,90-96,120-130,162-168
3ih5 B:72-88,90-96,120-131,162-168
3gos B:56-71,114-120,120-125,130-137
3gos B:56-71,108-113,120-125,124-131
3gos C:56-71,108-113,119-125,124-131
3p42 C:93-110,148-154,209-213,215-220
3p42 D:93-110,148-155,208-213,215-221
3p42 A:93-110,148-154,209-213,215-220
3p42 B:93-110,148-155,209-213,215-221
3cj8 C:-1-13,99-106,106-112,117-124
3cj8 A:0-13,99-106,106-112,117-124
3cj8 B:-1-13,99-106,106-112,117-124
3das A:162-169,195-200,224-231,233-239
2x60 A:263-272,286-292,296-301,303-311
2x60 B:263-272,286-292,296-301,303-311
2l38 A:13-26,32-38,95-104,167-175
2x5s B:263-272,286-292,296-301,303-311
2x5s A:263-272,286-292,296-301,303-311
2ism B:157-164,195-200,228-237,239-245
2ism A:157-164,195-201,230-237,240-245
2zyh B:337-348,356-361,449-458,463-470
2zyh A:337-348,356-361,449-458,463-470
3tk8 A:94-109,147-152,158-164,163-170
3tk8 B:94-109,147-152,158-164,163-170
3tk8 C:94-109,147-152,158-164,163-170
3c8v D:229-246,317-323,322-329,334-340
3c8v B:229-246,317-323,322-329,334-340
3c8v A:229-248,317-323,322-329,334-340
3c8v A:229-248,266-271,271-278,284-289
3c8v C:229-246,317-323,322-329,334-340
2x65 B:263-272,286-293,296-301,303-311
2x65 A:263-272,286-293,296-301,303-311
2x5z B:263-272,286-292,296-301,303-311
2x5z A:263-272,286-293,296-301,303-311
2ks4 A:14-26,30-39,96-106,169-175