1. c.36.1 Thiamin diphosphate-binding fold (THDP-binding) there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules ! two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules ! Thiamin diphosphate-binding fold (THDP-binding) 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465 2r8o d2r8oa1 A:441-452,453-461,495-509,511-519 1ay0 d1ay0b2 B:449-460,461-469,503-518,519-527 1tkc d1tkcb2 B:449-460,461-470,503-518,519-527 1ngs d1ngsb2 B:449-460,461-470,503-518,519-527 1tkb d1tkbb2 B:449-460,461-469,503-518,519-527 1ngs d1ngsa2 A:449-460,461-470,503-518,519-527 2ihv d2ihva2 A:80-99,99-108,141-159,161-169 2ihv d2ihvb2 B:80-99,99-108,141-159,161-169 1tka d1tkab2 B:449-460,461-470,503-518,519-527 1upa d1upab2 B:81-99,99-108,141-159,161-169 2ihv d2ihvd2 D:80-99,99-108,141-159,161-169 2c3p d2c3pb2 B:970-981,983-991,1045-1060,1061-1069 2pda d2pdaa2 A:970-981,983-991,1045-1060,1061-1069 2pda d2pdab2 B:970-981,983-991,1045-1060,1061-1069 1zpd d1zpdb3 B:446-457,457-467,514-529,530-539 1upb d1upbd2 D:81-99,99-108,141-159,161-169 1upc d1upcb2 B:81-99,99-108,141-159,161-169 1upa d1upaa2 A:81-99,99-108,141-159,161-169 1zpd d1zpda3 A:446-457,457-467,514-529,530-539 1upb d1upba2 A:81-99,99-108,141-159,161-169 2uza d2uzab2 B:970-981,983-991,1045-1060,1061-1069 2iht d2ihtd2 D:81-99,99-108,141-159,161-169 1gpu d1gpua2 A:449-460,461-469,503-518,519-527 1upa d1upad2 D:81-99,99-108,141-159,161-169 2c3o d2c3oa2 A:970-981,983-991,1045-1060,1061-1069 1upb d1upbc2 C:81-99,99-108,141-159,161-169 2c3p d2c3pa2 A:970-981,983-991,1045-1060,1061-1069 2c3y d2c3yb2 B:970-981,983-991,1045-1060,1061-1069 1upb d1upbb2 B:81-99,99-108,141-159,161-169 2iht d2ihtc2 C:81-99,99-108,141-159,161-169 1yi0 d1yi0a2 A:175-186,187-195,227-244,247-255 1zpd d1zpde3 E:446-457,457-467,514-529,530-539 2uza d2uzaa2 A:970-981,983-991,1045-1060,1061-1069 1zpd d1zpdf3 F:446-457,457-467,514-529,530-539 2ji9 d2ji9a2 A:79-98,98-108,141-158,161-170 2iht d2ihta2 A:81-99,99-108,141-159,161-169 1r9j d1r9jb1 B:439-450,451-460,493-508,509-517 1upc d1upce2 E:81-99,99-108,141-159,161-169 1yhy d1yhya2 A:175-186,187-195,227-244,247-255 2iht d2ihtb2 B:81-99,99-108,141-159,161-169 1ybh d1ybha2 A:175-186,186-195,227-244,247-255 2c31 d2c31a2 A:79-98,98-108,141-158,161-170 1upa d1upac2 C:81-99,99-108,141-159,161-169 2ihu d2ihua2 A:81-99,99-108,141-159,161-169 2c31 d2c31b2 B:79-98,98-108,141-158,161-170 2c3y d2c3ya2 A:970-981,983-991,1045-1060,1061-1069 2ji9 d2ji9b2 B:79-98,98-108,141-158,161-170 2c42 d2c42b2 B:970-981,983-991,1045-1060,1061-1069 1upc d1upcf2 F:81-99,99-108,141-159,161-169 1upc d1upcd2 D:81-99,99-108,141-159,161-169 1upc d1upca2 A:81-99,99-108,141-159,161-169 2c3u d2c3ua2 A:970-981,983-991,1045-1060,1061-1069 1upc d1upcc2 C:81-99,99-108,141-159,161-169 1yi1 d1yi1a2 A:175-186,186-195,227-244,247-255 1kek d1keka2 A:970-981,983-991,1045-1060,1061-1069 2c3m d2c3mb2 B:970-981,983-991,1045-1060,1061-1069 1r9j d1r9ja1 A:439-450,451-460,493-508,509-517 2c42 d2c42a2 A:970-981,983-991,1045-1060,1061-1069 1t9a d1t9aa2 A:170-181,181-190,222-239,242-250 1z8n d1z8na2 A:175-186,186-195,227-244,247-255 2ji8 d2ji8b2 B:79-98,98-108,141-158,161-170 2c3m d2c3ma2 A:970-981,983-991,1045-1060,1061-1069 2ji6 d2ji6a2 A:79-98,98-108,141-158,161-170 2jib d2jibb2 B:79-98,98-108,141-158,161-170 2ji7 d2ji7b2 B:79-98,98-108,141-158,161-170 1ovm d1ovmb2 B:82-93,93-102,144-160,160-168 1ovm d1ovmd2 D:82-93,93-102,144-160,160-168 1ovm d1ovma2 A:82-93,93-102,144-160,160-168 2ji6 d2ji6b2 B:79-98,98-108,141-158,161-170 1ovm d1ovmc2 C:82-93,93-102,144-160,160-168 2jib d2jiba2 A:79-98,98-108,141-158,161-170 2ji7 d2ji7a2 A:79-98,98-108,141-158,161-170 1t9b d1t9ba2 A:170-181,181-190,222-239,242-250 1t9d d1t9dd2 D:170-181,181-190,222-239,242-250 2c3u d2c3ub2 B:970-981,983-991,1045-1060,1061-1069 1kek d1kekb2 B:970-981,983-991,1045-1060,1061-1069 1t9a d1t9ab2 B:170-181,181-190,222-239,242-250 2ji8 d2ji8a2 A:79-98,98-108,141-158,161-170 1t9d d1t9dc2 C:170-181,181-190,222-239,242-250 1t9c d1t9cb2 B:170-181,181-190,222-239,242-250 1t9c d1t9ca2 A:170-181,181-190,222-239,242-250 1t9d d1t9da2 A:170-181,181-190,222-239,242-250 1n0h d1n0hb2 B:170-181,181-190,222-239,242-250 1jsc d1jscb2 B:170-181,181-190,222-239,242-250 1t9d d1t9db2 B:170-181,181-190,222-239,242-250 1n0h d1n0ha2 A:170-181,181-190,222-239,242-250 1jsc d1jsca2 A:170-181,181-190,222-239,242-250 1t9b d1t9bb2 B:170-181,181-190,222-239,242-250 2bff d2bffa1 A:198-212,213-222,257-276,276-285 1b0p d1b0pa2 A:970-981,983-991,1045-1060,1061-1069 1v11 d1v11a_ A:198-212,213-222,257-276,276-285 1olx d1olxa_ A:198-212,213-222,257-276,276-285 1x7z d1x7za_ A:198-212,213-222,257-276,276-285 1b0p d1b0pb2 B:970-981,983-991,1045-1060,1061-1069 2bfd d2bfda1 A:198-212,213-222,257-276,276-285 1v16 d1v16a_ A:198-212,213-222,257-276,276-285 1ozf d1ozfb2 B:80-89,99-108,140-157,160-168 2r8o d2r8ob1 B:441-452,453-461,495-510,511-519 1pow d1powb2 B:90-101,102-110,142-161,161-169 2r5n d2r5na1 A:441-452,453-461,495-510,511-519 1yi0 d1yi0a2 A:167-176,187-195,227-244,247-255 1yhz d1yhza2 A:167-176,188-195,227-244,247-255 1x7y d1x7ya_ A:198-212,213-222,257-276,276-285 2r8p d2r8pb1 B:441-452,453-461,495-510,511-519 1v1r d1v1ra_ A:198-212,213-222,257-276,276-285 1ozf d1ozfa2 A:80-89,99-108,140-157,160-168 1x7w d1x7wa_ A:198-212,213-222,257-276,276-285 1trk d1trkb2 B:449-460,461-470,503-517,519-527 1yhy d1yhya2 A:167-176,187-195,227-244,247-255 1tkb d1tkba2 A:449-460,461-470,503-517,519-527 1ozg d1ozgb2 B:80-89,99-108,140-157,160-168 1x80 d1x80a_ A:198-212,213-222,257-276,276-285 1tkc d1tkca2 A:449-460,461-470,503-517,519-527 1ozf d1ozfb2 B:88-99,99-108,140-157,160-168 1ozg d1ozga2 A:80-89,99-108,140-157,160-168 1yhz d1yhza2 A:175-186,188-195,227-244,247-255 1ozf d1ozfa2 A:88-99,99-108,140-157,160-168 1ay0 d1ay0a2 A:449-460,461-470,503-517,519-527 1ozg d1ozgb2 B:88-99,99-108,140-157,160-168 1mcz d1mczo2 O:78-89,89-98,131-148,151-159 2fn3 d2fn3a2 A:70-79,89-99,131-148,151-160 1mcz d1mczc2 C:78-89,89-98,131-148,151-159 1mcz d1mczb2 B:78-89,89-98,131-148,151-159 1mcz d1mczg2 G:78-89,89-98,131-148,151-159 1mcz d1mczi2 I:78-89,89-98,131-148,151-159 1mcz d1mczk2 K:78-89,89-98,131-148,151-159 1ozh d1ozhd2 D:80-89,99-108,140-157,160-168 2fn3 d2fn3a2 A:78-89,89-99,131-148,151-160 2c3o d2c3ob2 B:967-981,983-991,1045-1060,1061-1069 1pow d1powb2 B:82-91,102-110,142-161,161-169 1ozg d1ozga2 A:88-99,99-108,140-157,160-168 2v3w d2v3wb2 B:78-89,89-100,131-148,151-160 1w85 d1w85e_ E:178-192,194-202,237-255,257-265 1pyd d1pyda2 A:73-82,93-101,141-160,160-168 2bfe d2bfea1 A:198-212,212-222,257-276,276-285 1ybh d1ybha2 A:167-176,186-195,227-244,247-255 1ols d1olsa_ A:198-212,212-222,257-276,276-285 1ozh d1ozhc2 C:80-89,99-108,140-157,160-168 1pyd d1pyda2 A:81-92,93-101,141-160,160-168 2g25 d2g25b1 B:599-608,620-628,662-679,685-692 1x7x d1x7xa_ A:198-212,212-222,257-276,276-285 1v1m d1v1ma_ A:198-212,212-222,257-276,276-285 1bfd d1bfda2 A:78-89,89-100,131-148,151-160 2bfc d2bfca1 A:198-212,212-222,257-276,276-285 1w85 d1w85g_ G:178-192,194-202,237-255,257-265 2bfb d2bfba1 A:198-212,212-222,257-276,276-285 1ozh d1ozhd2 D:88-99,99-108,140-157,160-168 1mcz d1mcza2 A:70-79,89-100,131-148,151-160 1olu d1olua_ A:198-212,212-222,257-276,276-285 1mcz d1mczf2 F:70-79,89-100,131-148,151-160 2v3w d2v3wd2 D:78-89,89-100,131-148,151-160 1mcz d1mczm2 M:70-79,89-100,131-148,151-160 1mcz d1mczp2 P:70-79,89-100,131-148,151-160 1mcz d1mczd2 D:70-79,89-100,131-148,151-160 1ovm d1ovmc2 C:74-83,93-102,144-160,160-168 1po7 d1po7a2 A:78-89,89-100,131-148,151-160 1mcz d1mcze2 E:70-79,89-100,131-148,151-160 1mcz d1mczn2 N:70-79,89-100,131-148,151-160 1mcz d1mczj2 J:70-79,89-100,131-148,151-160 1ovm d1ovma2 A:74-83,93-102,144-160,160-168 1ovm d1ovmb2 B:74-83,93-102,144-160,160-168 1yi1 d1yi1a2 A:167-176,186-195,227-244,247-255 1mcz d1mczl2 L:70-79,89-100,131-148,151-160 1mcz d1mczh2 H:70-79,89-100,131-148,151-160 2v3w d2v3wd2 D:70-79,89-100,131-148,151-160 1ovm d1ovmd2 D:74-83,93-102,144-160,160-168 2v3w d2v3wb2 B:70-79,89-100,131-148,151-160 1q6z d1q6za2 A:78-89,89-100,131-148,151-160 1z8n d1z8na2 A:167-176,186-195,227-244,247-255 1ozh d1ozha2 A:88-99,99-108,140-157,160-168 1ozh d1ozhb2 B:80-89,99-108,140-157,160-168 1q6z d1q6za2 A:70-79,89-100,131-148,151-160 1po7 d1po7a2 A:70-79,89-100,131-148,151-160 1mcz d1mczm2 M:78-89,89-100,131-148,151-160 1mcz d1mcze2 E:78-89,89-100,131-148,151-160 1mcz d1mczd2 D:78-89,89-100,131-148,151-160 1mcz d1mczn2 N:78-89,89-100,131-148,151-160 1mcz d1mcza2 A:78-89,89-100,131-148,151-160 1mcz d1mczf2 F:78-89,89-100,131-148,151-160 1mcz d1mczp2 P:78-89,89-100,131-148,151-160 1ozh d1ozhc2 C:88-99,99-108,140-157,160-168 1mcz d1mczl2 L:78-89,89-100,131-148,151-160 1mcz d1mczj2 J:78-89,89-100,131-148,151-160 1mcz d1mczh2 H:78-89,89-100,131-148,151-160 1w85 d1w85c_ C:178-192,194-202,237-255,257-265 1w85 d1w85a_ A:178-192,194-202,237-255,257-265 1t9a d1t9aa2 A:162-171,181-190,222-239,242-250 1pox d1poxa2 A:90-101,102-111,142-161,161-170 1t9a d1t9ab2 B:162-171,181-190,222-239,242-250 1t9d d1t9dc2 C:162-171,181-190,222-239,242-250 1ozh d1ozhb2 B:88-99,99-108,140-157,160-168 1t9c d1t9cb2 B:162-171,181-190,222-239,242-250 1jsc d1jscb2 B:162-171,181-190,222-239,242-250 1bfd d1bfda2 A:70-79,89-100,131-148,151-160 1w88 d1w88g_ G:178-192,194-202,237-255,257-265 1mcz d1mczk2 K:70-79,89-98,131-148,151-159 1mcz d1mczi2 I:70-79,89-98,131-148,151-159 1jsc d1jsca2 A:162-171,181-190,222-239,242-250 1pox d1poxb2 B:90-101,102-111,142-161,161-170 1t9b d1t9bb2 B:162-171,181-190,222-239,242-250 1mcz d1mczc2 C:70-79,89-98,131-148,151-159 1mcz d1mczo2 O:70-79,89-98,131-148,151-159 1mcz d1mczb2 B:70-79,89-98,131-148,151-159 2qta d2qtab1 B:599-608,621-627,662-679,685-692 1t9b d1t9ba2 A:162-171,181-190,222-239,242-250 1mcz d1mczg2 G:70-79,89-98,131-148,151-159 1t9d d1t9dd2 D:162-171,181-190,222-239,242-250 1pow d1powa2 A:90-101,102-112,142-161,161-170 2g28 d2g28b1 B:599-608,621-627,662-679,685-692 1t9c d1t9ca2 A:162-171,181-190,222-239,242-250 1t9d d1t9db2 B:162-171,181-190,222-239,242-250 1n0h d1n0ha2 A:162-171,181-190,222-239,242-250 1n0h d1n0hb2 B:162-171,181-190,222-239,242-250 1w88 d1w88a_ A:178-192,194-202,237-255,257-265 1t9d d1t9da2 A:162-171,181-190,222-239,242-250 2ez4 d2ez4b2 B:90-101,102-111,142-161,161-170 2ezu d2ezua2 A:90-101,102-111,142-161,161-170 1w88 d1w88c_ C:178-192,194-202,237-255,257-265 2ez4 d2ez4a2 A:90-101,102-111,142-161,161-170 2ez8 d2ez8a2 A:90-101,102-111,142-161,161-170 2ezt d2ezta2 A:90-101,102-111,142-161,161-170 2ezu d2ezub2 B:90-101,102-111,142-161,161-170 2ezt d2eztb2 B:90-101,102-111,142-161,161-170 2qta d2qtaa1 A:599-608,620-627,662-679,685-692 2g67 d2g67b1 B:599-608,620-627,662-679,685-692 2ez8 d2ez8b2 B:90-101,102-111,142-161,161-170 1dtw d1dtwa_ A:198-212,213-223,257-276,276-286 1rp7 d1rp7b1 B:599-608,621-627,662-680,685-692 2ji6 d2ji6b3 B:458-469,471-479,521-536,537-545 2g67 d2g67a1 A:599-608,620-627,662-679,685-692 2iea d2ieab1 B:599-608,620-627,662-679,685-692 2ji9 d2ji9a3 A:458-469,471-479,521-536,537-545 2jib d2jibb3 B:458-469,471-479,521-536,537-545 1l8a d1l8ab2 B:599-608,620-627,662-679,685-692 2qtc d2qtca1 A:599-608,620-627,662-679,685-692 2ji9 d2ji9b3 B:458-469,471-479,521-536,537-545 2bew d2bewa1 A:198-212,213-223,257-276,276-286 2r5n d2r5nb1 B:441-452,454-461,495-509,512-519 2ji6 d2ji6a3 A:458-469,471-479,521-536,537-545 1rp7 d1rp7a1 A:599-608,620-627,662-679,685-692 1zpd d1zpde2 E:80-91,92-101,140-159,159-168 2jib d2jiba3 A:458-469,471-479,521-536,537-545 1zpd d1zpdf2 F:80-91,92-101,140-159,159-168 1qpb d1qpbb2 B:81-92,93-102,144-160,160-169 2iea d2ieaa1 A:599-608,620-627,662-679,685-692 2ji8 d2ji8b3 B:458-469,471-479,521-536,537-545 1u5b d1u5ba_ A:198-212,213-223,257-276,276-286 1wci d1wcia1 A:198-212,213-223,257-276,276-286 2ji8 d2ji8a3 A:458-469,471-479,521-536,537-545 2ji7 d2ji7b3 B:458-469,471-479,521-536,537-545 1zpd d1zpda2 A:80-91,92-101,140-159,159-168 2beu d2beua1 A:198-212,213-223,257-276,276-286 1zpd d1zpdb2 B:80-91,92-101,140-159,159-168 2g28 d2g28a1 A:599-608,620-627,662-679,685-692 1l8a d1l8aa2 A:599-608,620-627,662-679,685-692 2bev d2beva1 A:198-212,213-223,257-276,276-286 1w88 d1w88e_ E:178-192,194-202,237-255,257-265 2qtc d2qtcb1 B:599-608,620-627,662-680,685-692 2v3w d2v3wc2 C:78-89,89-100,131-149,151-160 2ji7 d2ji7a3 A:458-469,471-479,521-536,537-545 2g25 d2g25a1 A:599-608,620-627,662-679,685-692 2v3w d2v3wa2 A:78-89,89-100,131-149,151-160 1yno d1ynoa2 A:70-79,91-100,131-148,151-160 2ez8 d2ez8a3 A:453-464,466-474,519-536,536-544 2ez4 d2ez4a3 A:453-464,466-474,519-536,536-544 2ezt d2ezta3 A:453-464,466-474,519-536,536-544 2c31 d2c31a3 A:458-469,471-479,521-536,537-545 2ez8 d2ez8b3 B:453-464,466-474,518-536,536-544 2ezu d2ezua3 A:453-464,466-474,519-536,536-544 2ezu d2ezub3 B:453-464,466-474,519-536,536-544 2fwn d2fwna2 A:70-79,91-100,131-148,151-160 2ez9 d2ez9a3 A:453-464,466-474,519-536,536-544 2ezt d2eztb3 B:453-464,466-474,519-536,536-544 2ez4 d2ez4b3 B:453-464,466-474,519-536,536-544 1qpb d1qpbb2 B:73-82,93-102,144-160,160-169 2ez9 d2ez9b3 B:453-464,466-474,519-536,536-544 2uza d2uzab2 B:962-971,983-991,1045-1060,1061-1069 1pow d1powa3 A:453-464,466-474,519-536,536-544 1b0p d1b0pa2 A:962-971,983-991,1045-1060,1061-1069 1pi3 d1pi3a2 A:70-79,91-100,131-148,151-160 1umd d1umdc_ C:180-194,196-204,239-257,259-267 2ez9 d2ez9b2 B:90-101,102-112,142-161,161-171 2ez9 d2ez9a2 A:90-101,102-112,142-161,161-171 1umc d1umca_ A:180-194,196-204,239-257,259-267 1pow d1powa2 A:82-91,102-112,142-161,161-170 2c31 d2c31b3 B:458-469,471-479,521-536,537-545 1ni4 d1ni4a_ A:172-186,188-196,229-247,249-257 1umb d1umba_ A:180-194,196-204,239-257,259-267 1umb d1umbc_ C:180-194,196-204,239-257,259-267 2v3w d2v3wc2 C:70-79,89-100,131-149,151-160 1pox d1poxa3 A:453-464,466-474,519-536,536-544 1umd d1umda_ A:180-194,196-204,239-257,259-267 1pow d1powb3 B:453-464,466-474,519-536,536-544 1pox d1poxb3 B:453-464,466-474,519-536,536-544 2ozl d2ozla1 A:172-186,188-196,229-247,249-257 2c3m d2c3mb2 B:962-971,983-991,1045-1060,1061-1069 2c3p d2c3pb2 B:962-971,983-991,1045-1060,1061-1069 1b0p d1b0pb2 B:962-971,983-991,1045-1060,1061-1069 2v3w d2v3wa2 A:70-79,89-100,131-149,151-160 2c3p d2c3pa2 A:962-971,983-991,1045-1060,1061-1069 2c42 d2c42b2 B:962-971,983-991,1045-1060,1061-1069 2c42 d2c42a2 A:962-971,983-991,1045-1060,1061-1069 2c3y d2c3yb2 B:962-971,983-991,1045-1060,1061-1069 2c3y d2c3ya2 A:962-971,983-991,1045-1060,1061-1069 2uza d2uzaa2 A:962-971,983-991,1045-1060,1061-1069 2c3u d2c3ub2 B:962-971,983-991,1045-1060,1061-1069 2bp7 d2bp7h1 H:88-108,114-121,152-167,168-175 1umc d1umcc_ C:180-194,196-204,239-257,259-267 2pda d2pdab2 B:962-971,983-991,1045-1060,1061-1069 1qpb d1qpba2 A:81-92,93-103,141-160,160-170 2pda d2pdaa2 A:962-971,983-991,1045-1060,1061-1069 1kek d1kekb2 B:962-971,983-991,1045-1060,1061-1069 1pvd d1pvdb2 B:73-82,94-102,141-160,161-169 2c3m d2c3ma2 A:962-971,983-991,1045-1060,1061-1069 2v3w d2v3wd3 D:434-445,447-455,499-513,515-523 2ozl d2ozlc1 C:172-186,188-196,229-247,249-257 2c3o d2c3oa2 A:962-971,983-991,1045-1060,1061-1069 1qpb d1qpba2 A:73-82,93-103,141-160,160-170 1kek d1keka2 A:962-971,983-991,1045-1060,1061-1069 1itz d1itzb2 B:454-465,467-474,508-523,525-532 1pox d1poxa2 A:82-91,102-111,142-161,161-170 2c3u d2c3ua2 A:962-971,983-991,1045-1060,1061-1069 1itz d1itzc2 C:454-465,467-475,508-523,525-532 1zpd d1zpde2 E:72-81,92-101,140-159,159-168 1ni4 d1ni4c_ C:172-186,188-196,229-247,249-257 1zpd d1zpdb2 B:72-81,92-101,140-159,159-168 2ez4 d2ez4b2 B:82-91,102-111,142-161,161-170 1pox d1poxb2 B:82-91,102-111,142-161,161-170 1zpd d1zpdf2 F:72-81,92-101,140-159,159-168 2ez4 d2ez4a2 A:82-91,102-111,142-161,161-170 1zpd d1zpda2 A:72-81,92-101,140-159,159-168 1itz d1itza2 A:454-465,467-474,508-523,525-532 2ezt d2ezta2 A:82-91,102-111,142-161,161-170 2ezt d2eztb2 B:82-91,102-111,142-161,161-170 2ez8 d2ez8a2 A:82-91,102-111,142-161,161-170 2ezu d2ezua2 A:82-91,102-111,142-161,161-170 1qgd d1qgda1 A:441-452,454-461,495-510,512-519 2v3w d2v3wa3 A:434-445,447-455,499-513,515-523 2ezu d2ezub2 B:82-91,102-111,142-161,161-170 1yno d1ynoa3 A:434-445,447-455,499-513,515-523 1pvd d1pvda2 A:73-82,94-103,141-160,161-169 2v3w d2v3wb3 B:434-445,447-455,499-513,515-523 2fwn d2fwna3 A:434-445,447-455,499-513,515-523 2r8p d2r8pa1 A:441-452,454-461,495-510,512-519 1mcz d1mczb3 B:434-445,447-455,499-513,515-523 1qgd d1qgdb1 B:441-452,454-461,495-510,512-519 1mcz d1mcza3 A:434-445,447-455,499-513,515-523 1mcz d1mczj3 J:434-445,447-455,499-513,515-523 1mcz d1mczp3 P:434-445,447-455,499-513,515-523 1mcz d1mczg3 G:434-445,447-455,499-513,515-523 1mcz d1mczh3 H:434-445,447-455,499-513,515-523 1mcz d1mczc3 C:434-445,447-455,499-513,515-523 1mcz d1mczl3 L:434-445,447-455,499-513,515-523 1pi3 d1pi3a3 A:434-445,447-455,499-513,515-523 1mcz d1mczi3 I:434-445,447-455,499-513,515-523 1mcz d1mczo3 O:434-445,447-455,499-513,515-523 1mcz d1mczf3 F:434-445,447-455,499-513,515-523 1mcz d1mcze3 E:434-445,447-455,499-513,515-523 2ez8 d2ez8b2 B:82-91,102-111,142-161,161-170 1mcz d1mczm3 M:434-445,447-455,499-513,515-523 1mcz d1mczn3 N:434-445,447-455,499-513,515-523 1mcz d1mczk3 K:434-445,447-455,499-513,515-523 1mcz d1mczd3 D:434-445,447-455,499-513,515-523 1v5g d1v5ga3 A:448-459,461-469,513-530,531-539 2fn3 d2fn3a3 A:434-445,447-455,499-513,515-523 1po7 d1po7a3 A:434-445,447-455,499-513,515-523 1q6z d1q6za3 A:434-445,447-455,499-513,515-523 2ez9 d2ez9b2 B:82-91,102-112,142-161,161-171 1v5f d1v5fa3 A:448-459,461-469,513-530,531-539 2v3w d2v3wc3 C:434-445,447-455,499-513,515-523 2ez9 d2ez9a2 A:82-91,102-112,142-161,161-171 1v5e d1v5ea3 A:448-459,461-469,513-530,531-539 1bfd d1bfda3 A:434-445,447-455,499-513,515-523 1qs0 d1qs0a_ A:218-232,234-243,278-296,298-307 2dji d2djia3 A:448-459,461-469,513-530,531-539 2bp7 d2bp7g1 G:218-232,234-243,278-296,298-307 2bp7 d2bp7c1 C:218-232,234-243,278-296,298-307 2bp7 d2bp7e1 E:218-232,234-243,278-296,298-307 1v5g d1v5ga2 A:77-86,98-106,137-156,157-165 1v5f d1v5fa2 A:77-86,98-106,137-156,157-165 1v5e d1v5ea2 A:77-86,98-106,137-156,157-165 2dji d2djia2 A:77-86,98-106,137-156,157-165 2bp7 d2bp7a1 A:218-232,234-243,278-296,298-307 1trk d1trka2 A:449-460,462-470,503-518,520-527 1ovm d1ovmc3 C:441-452,454-462,506-520,522-530 1gpu d1gpub2 B:449-460,462-470,503-518,520-527 1ovm d1ovmd3 D:441-452,454-462,506-520,522-530 1upc d1upcc3 C:469-480,482-490,535-550,551-559 1upb d1upbd3 D:469-480,482-490,535-550,551-559 1ovm d1ovma3 A:441-452,454-462,506-520,522-530 1ovm d1ovmb3 B:441-452,454-462,506-520,522-530 1upc d1upce3 E:469-480,482-490,535-550,551-559 2iht d2ihtd3 D:469-480,482-490,535-550,551-559 1upb d1upbc3 C:469-480,482-490,535-550,551-559 1ozh d1ozhb3 B:453-464,466-474,517-532,533-542 2ihv d2ihva3 A:469-480,482-490,535-550,551-559 1upa d1upaa3 A:469-480,482-490,535-550,551-559 2iht d2ihtb3 B:469-480,482-490,535-550,551-559 1yi0 d1yi0a3 A:544-555,557-565,617-632,633-641 1upb d1upba3 A:469-480,482-490,535-550,551-559 2iht d2ihta3 A:469-480,482-490,535-550,551-559 1z8n d1z8na3 A:544-555,557-565,617-632,633-641 1ybh d1ybha3 A:544-555,557-565,617-632,633-641 1upa d1upac3 C:469-480,482-490,535-550,551-559 1upc d1upcd3 D:469-480,482-490,535-550,551-559 2ozl d2ozld1 D:89-105,111-118,149-164,165-171 1pyd d1pydb2 B:73-82,94-103,141-160,161-170 1ozh d1ozhd3 D:453-464,466-474,517-532,533-542 2iht d2ihtc3 C:469-480,482-490,535-550,551-559 1pi3 d1pi3a2 A:78-89,91-100,131-148,151-160 1ozh d1ozha3 A:453-464,466-474,517-532,533-542 1um9 d1um9c_ C:180-194,196-205,239-257,259-268 1upc d1upcb3 B:469-480,482-490,535-550,551-559 1yhz d1yhza3 A:544-555,557-565,617-632,633-641 2ihu d2ihua3 A:469-480,482-490,535-550,551-559 1tka d1tkaa2 A:449-460,462-470,503-518,520-527 1upa d1upab3 B:469-480,482-490,535-550,551-559 1ozh d1ozhc3 C:453-464,466-474,517-532,533-542 2ihv d2ihvd3 D:469-480,482-490,535-550,551-559 2ihv d2ihvb3 B:469-480,482-490,535-550,551-559 1upa d1upad3 D:469-480,482-490,535-550,551-559 1ozf d1ozfa3 A:453-464,466-474,517-532,533-542 1upc d1upcf3 F:469-480,482-490,535-550,551-559 1um9 d1um9a_ A:180-194,196-205,239-257,259-268 2fwn d2fwna2 A:78-89,91-100,131-148,151-160 1yno d1ynoa2 A:78-89,91-100,131-148,151-160 1upb d1upbb3 B:469-480,482-490,535-550,551-559 2ozl d2ozlb1 B:89-105,111-118,149-164,165-171 1yi1 d1yi1a3 A:544-555,557-565,617-632,633-641 1yhy d1yhya3 A:544-555,557-565,617-632,633-641 1ni4 d1ni4d1 D:89-105,111-118,149-164,165-171 1ozg d1ozga3 A:453-464,466-474,517-532,533-542 1r9j d1r9jb2 B:160-174,177-185,221-236,239-246 1r9j d1r9ja2 A:160-174,177-185,221-236,239-246 1ozg d1ozgb3 B:453-464,466-474,517-532,533-542 1ozf d1ozfb3 B:453-464,466-474,517-532,533-542 1rp7 d1rp7a1 A:607-618,620-627,662-679,685-692 2iea d2ieaa1 A:607-618,620-627,662-679,685-692 2g67 d2g67b1 B:607-618,620-627,662-679,685-692 1pvd d1pvdb2 B:81-92,94-102,141-160,161-169 1l8a d1l8ab2 B:607-618,620-627,662-679,685-692 1l8a d1l8aa2 A:607-618,620-627,662-679,685-692 2iea d2ieab1 B:607-618,620-627,662-679,685-692 2qta d2qtaa1 A:607-618,620-627,662-679,685-692 2pda d2pdab1 B:93-104,106-114,145-164,165-173 2pda d2pdaa1 A:93-104,106-114,145-164,165-173 2c3y d2c3ya1 A:93-104,106-114,145-164,165-173 2g25 d2g25b1 B:607-618,620-628,662-679,685-692 1ni4 d1ni4b1 B:89-105,111-118,149-164,165-171 2c3y d2c3yb1 B:93-104,106-114,145-164,165-173 2g67 d2g67a1 A:607-618,620-627,662-679,685-692 2c3o d2c3ob1 B:93-104,106-114,145-164,165-173 2uza d2uzab1 B:93-104,106-114,145-164,165-173 2qtc d2qtca1 A:607-618,620-627,662-679,685-692 2c3o d2c3oa1 A:93-104,106-114,145-164,165-173 2c3p d2c3pa1 A:93-104,106-114,145-164,165-173 1kek d1keka1 A:93-104,106-114,145-164,165-173 2c3p d2c3pb1 B:93-104,106-114,145-164,165-173 2c3u d2c3ub1 B:93-104,106-114,145-164,165-173 2g28 d2g28a1 A:607-618,620-627,662-679,685-692 2uza d2uzaa1 A:93-104,106-114,145-164,165-173 1n0h d1n0ha3 A:556-567,569-577,621-635,637-645 1v5g d1v5ga2 A:85-96,98-106,137-156,157-165 2g25 d2g25a1 A:607-618,620-627,662-679,685-692 1b0p d1b0pa1 A:93-104,106-114,145-164,165-173 2c42 d2c42a1 A:93-104,106-114,145-164,165-173 2c3m d2c3ma1 A:93-104,106-114,145-164,165-173 1kek d1kekb1 B:93-104,106-114,145-164,165-173 2c3m d2c3mb1 B:93-104,106-114,145-164,165-173 2c3u d2c3ua1 A:93-104,106-114,145-164,165-173 1b0p d1b0pb1 B:93-104,106-114,145-164,165-173 1v5e d1v5ea2 A:85-96,98-106,137-156,157-165 1jsc d1jscb3 B:556-567,569-577,621-635,637-645 1v5f d1v5fa2 A:85-96,98-106,137-156,157-165 2dji d2djia2 A:85-96,98-106,137-156,157-165 1n0h d1n0hb3 B:556-567,569-577,621-635,637-645 1upc d1upca3 A:469-480,482-490,535-550,551-560 2c42 d2c42b1 B:93-104,106-114,145-164,165-173 1jsc d1jsca3 A:556-567,569-577,621-635,637-645 1t9c d1t9ca3 A:556-567,569-577,621-635,637-645 1t9a d1t9ab3 B:556-567,569-577,621-635,637-645 1t9b d1t9ba3 A:556-567,569-577,621-635,637-645 1t9a d1t9aa3 A:556-567,569-577,621-635,637-645 1rp7 d1rp7b2 B:235-249,252-260,365-379,383-390 1t9c d1t9cb3 B:556-567,569-577,621-635,637-645 2g67 d2g67b2 B:235-249,252-260,365-379,383-390 1pvd d1pvda2 A:81-92,94-103,141-160,161-169 1t9d d1t9dd3 D:556-567,569-577,621-635,637-645 1t9d d1t9da3 A:556-567,569-577,621-635,637-645 2qtc d2qtcb1 B:607-618,620-627,662-680,685-692 1t9b d1t9bb3 B:556-567,569-577,621-635,637-645 1t9d d1t9db3 B:556-567,569-577,621-635,637-645 1t9d d1t9dc3 C:556-567,569-577,621-635,637-645 2qta d2qtab2 B:235-249,252-260,365-379,383-390 1l8a d1l8ab1 B:235-249,252-260,365-379,383-390 1rp7 d1rp7a2 A:235-249,252-260,365-379,383-390 2qtc d2qtcb2 B:235-249,252-260,365-379,383-390 2iea d2ieab2 B:235-249,252-260,365-379,383-390 2qtc d2qtca2 A:235-249,252-260,365-379,383-390 2qta d2qtaa2 A:235-249,252-260,365-379,383-390 2g28 d2g28a2 A:235-249,252-260,365-379,383-390 2g28 d2g28b2 B:235-249,252-260,365-379,383-390 2iea d2ieaa2 A:235-249,252-260,365-380,383-390 2g25 d2g25a2 A:235-249,252-260,365-379,383-390 1l8a d1l8aa1 A:235-249,252-260,365-380,383-390 2r5n d2r5na2 A:160-174,177-185,220-235,238-245 2r8p d2r8pa2 A:160-174,177-185,220-235,238-245 2g25 d2g25b2 B:235-249,252-260,365-379,383-390 2r5n d2r5nb2 B:160-174,177-185,220-235,238-245 2r8p d2r8pb2 B:160-174,177-185,220-235,238-245 1itz d1itzb1 B:173-187,190-198,234-249,252-259 2r8o d2r8ob2 B:160-174,177-185,220-235,238-245 2r8o d2r8oa2 A:160-174,177-185,220-235,238-245 1itz d1itzc1 C:173-187,190-198,234-249,252-259 1pyd d1pydb2 B:81-92,94-103,141-160,161-170 1itz d1itza1 A:173-187,190-198,234-249,252-259 1qgd d1qgdb2 B:160-174,177-185,220-235,238-245 1qgd d1qgda2 A:160-174,177-185,220-235,238-245 2g67 d2g67a2 A:235-249,252-260,365-379,383-390 1gpu d1gpub1 B:162-176,179-187,223-238,241-248 1gpu d1gpua1 A:162-176,179-187,223-238,241-248 1tkc d1tkcb1 B:162-176,179-187,223-238,241-248 1tka d1tkab1 B:162-176,179-187,223-238,241-248 1tkb d1tkbb1 B:162-176,179-187,223-238,241-248 1tka d1tkaa1 A:162-176,179-187,223-238,241-248 1ay0 d1ay0b1 B:162-176,179-187,223-238,241-248 2qta d2qtab1 B:607-618,621-627,662-679,685-692 1ngs d1ngsb1 B:162-176,179-187,223-238,241-248 1trk d1trkb1 B:162-176,179-187,223-238,241-248 1tkc d1tkca1 A:162-176,179-187,223-238,241-248 1ngs d1ngsa1 A:162-176,179-187,223-238,241-248 1trk d1trka1 A:162-176,179-187,223-238,241-248 1ay0 d1ay0a1 A:162-176,179-187,223-238,241-248 1tkb d1tkba1 A:162-176,179-187,223-238,241-248 1ik6 d1ik6a1 A:93-107,116-124,154-169,170-178 1w88 d1w88h1 H:86-105,111-119,149-164,165-173 2g28 d2g28b1 B:607-618,621-627,662-679,685-692 1rp7 d1rp7b1 B:607-618,621-627,662-680,685-692 1w88 d1w88f1 F:87-105,111-119,149-164,165-173 1umb d1umbb1 B:90-106,112-119,150-165,166-173 1umd d1umdb1 B:90-106,112-119,150-165,166-173 1umc d1umcb1 B:90-106,112-119,150-165,166-173 1um9 d1um9b1 B:90-106,112-119,150-165,166-173 1um9 d1um9d1 D:90-106,112-119,150-165,166-173 1umd d1umdd1 D:90-106,112-119,150-165,166-173 1umb d1umbd1 D:90-106,112-119,150-165,166-173 1umc d1umcd1 D:90-106,112-119,150-165,166-173 2bp7 d2bp7f1 F:92-108,114-121,152-167,168-175 2bp7 d2bp7d1 D:92-108,114-121,152-167,168-175 2bp7 d2bp7b1 B:92-108,114-121,152-167,168-175 1qs0 d1qs0b1 B:92-108,114-121,152-167,168-175 2bfc d2bfcb1 B:106-122,129-136,167-181,184-190 2bev d2bevb1 B:106-122,129-136,167-181,184-190 2bfd d2bfdb1 B:106-122,129-136,167-181,184-190 1w88 d1w88d1 D:89-105,111-119,149-164,165-173 1x7y d1x7yb1 B:106-122,129-136,167-181,184-190 2bff d2bffb1 B:106-122,129-136,167-181,184-190 1x7z d1x7zb1 B:106-122,129-136,167-181,184-190 1x7w d1x7wb1 B:106-122,129-136,167-181,184-190 1v11 d1v11b1 B:106-122,129-136,167-181,184-190 1wci d1wcib1 B:106-122,129-136,167-181,184-190 1u5b d1u5bb1 B:106-122,129-136,167-181,184-190 1v1r d1v1rb1 B:106-122,129-136,167-181,184-190 2beu d2beub1 B:106-122,129-136,167-181,184-190 1w85 d1w85h1 H:89-105,111-119,149-164,165-173 2bew d2bewb1 B:106-122,129-136,167-181,184-190 1ols d1olsb1 B:106-122,129-136,167-181,184-190 1w85 d1w85d1 D:89-105,111-119,149-164,165-173 1olu d1olub1 B:106-122,129-136,167-181,184-190 1v1m d1v1mb1 B:106-122,129-136,167-181,184-190 1x80 d1x80b1 B:106-122,129-136,167-181,184-190 1dtw d1dtwb1 B:106-122,129-136,167-181,184-190 1x7x d1x7xb1 B:106-122,129-136,167-181,184-190 1v16 d1v16b1 B:106-122,129-136,167-181,184-190 1w85 d1w85b1 B:89-105,111-119,149-164,165-173 1olx d1olxb1 B:106-122,129-136,167-181,184-190 1w88 d1w88b1 B:89-105,111-119,149-164,165-173 1w85 d1w85f1 F:89-105,111-119,149-164,165-173 2. c.86.1 Phosphoglycerate kinase Phosphoglycerate kinase consists of two non-similar domains, 3 layers (a/b/a) each ! Domain 1 has parallel beta-sheet of 6 strands, order 342156 ! Domain 2 has parallel beta-sheet of 6 strands, order 321456 13pk d13pka_ A:37-54,55-61,115-123,125-132 13pk d13pkc_ C:37-54,55-61,115-123,125-132 13pk d13pkd_ D:37-54,55-61,115-123,125-132 13pk d13pkb_ B:37-54,55-61,115-123,125-132 3pgk d3pgka_ A:42-53,55-61,99-110,110-117 1php d1phpa_ A:34-51,51-58,96-106,109-115 1v6s d1v6sa_ A:32-49,50-56,93-103,105-112 1ltk d1ltkb_ B:37-54,56-62,100-110,113-119 1v6s d1v6sb_ B:32-49,50-56,93-103,105-112 1hdi d1hdia_ A:35-53,55-61,100-110,113-119 1qpg d1qpga_ A:36-53,54-61,99-109,111-118 1vpe d1vpea_ A:33-51,52-58,96-106,109-115 1ltk d1ltka_ A:36-54,56-62,100-110,113-119 1vjc d1vjca_ A:35-53,53-61,100-110,113-119 16pk d16pka_ A:37-54,55-61,116-123,125-132 1vjd d1vjda_ A:35-53,55-61,100-110,113-119 1fw8 d1fw8a_ A:28-38,41-47,379-397,398-405 1ltk d1ltkc_ C:36-54,56-62,100-110,113-119 1kf0 d1kf0a_ A:35-53,55-61,100-110,113-119 4. c.73.1 Carbamate kinase-like the sheet topology is similar to those of undecaprenyl diphosphate synthase and the N-terminal domain of phosphoglycerate kinase ! Carbamate kinase-like 3 layers: a/b/a; mixed (mainly parallel) beta-sheet of 8 strands, order 34215786; strand 8 is antiparallel to the rest 2ij9 d2ij9b1 B:15-33,33-42,91-102,103-108 2ij9 d2ij9a1 A:15-33,33-42,91-102,103-108 2bri d2bria1 A:18-36,36-43,95-106,107-112 2brx d2brxa1 A:18-36,36-43,95-106,107-112 2bmu d2bmub1 B:18-37,36-43,95-106,107-112 2bmu d2bmua1 A:18-37,36-43,95-106,107-112 2buf d2bufh1 H:41-59,60-67,166-177,178-183 2bty d2btya1 A:35-53,53-61,149-160,161-166 2brx d2brxb1 B:18-37,36-43,95-106,107-112 2ako d2akoa1 A:20-39,38-46,103-121,122-128 2bne d2bneb1 B:30-48,49-56,118-129,130-136 2bnf d2bnfb1 B:30-48,49-56,118-129,130-136 2ap9 d2ap9f1 F:44-62,63-70,163-174,175-180 2ap9 d2ap9a1 A:44-62,63-70,163-174,175-180 2ap9 d2ap9b1 B:44-62,63-70,163-174,175-180 2ap9 d2ap9c1 C:44-62,63-70,163-174,175-180 2ap9 d2ap9e1 E:44-62,63-70,163-174,175-180 2buf d2bufd1 D:41-59,60-66,166-177,178-183 2buf d2bufl1 L:41-59,60-66,166-177,178-183 2buf d2bufg1 G:41-59,60-67,166-177,178-183 2ako d2akob1 B:20-38,38-46,103-121,122-128 2ako d2akod1 D:20-38,38-46,103-121,122-128 2ako d2akoc1 C:20-38,38-46,103-121,122-128 2buf d2bufa1 A:41-59,60-67,166-177,178-183 2bri d2brib1 B:18-37,36-43,95-106,107-112 2buf d2bufk1 K:41-59,60-66,166-177,178-183 2bty d2btyb1 B:35-53,53-61,149-160,161-166 2bnd d2bndb1 B:30-48,49-56,118-129,130-136 2bty d2btyc1 C:35-53,53-61,149-160,161-166 2ap9 d2ap9d1 D:44-62,63-69,163-174,175-180 2buf d2bufi1 I:41-59,60-67,166-177,178-183 2buf d2buff1 F:41-59,60-68,166-177,178-183 2buf d2bufb1 B:41-59,60-68,166-177,178-183 1ybd d1ybdb1 B:30-48,49-56,118-129,130-136 1ybd d1ybdc1 C:30-48,49-57,118-129,130-136 2a1f d2a1fd1 D:27-45,46-56,115-126,127-133 2a1f d2a1ff1 F:27-45,46-56,115-126,127-133 2bnd d2bnda1 A:30-48,49-58,118-129,130-136 2a1f d2a1fa1 A:27-45,46-55,115-126,127-133 2a1f d2a1fe1 E:27-45,46-55,115-126,127-133 2bne d2bnea1 A:30-48,49-59,118-129,130-136 2a1f d2a1fb1 B:27-45,46-55,115-126,127-133 2a1f d2a1fc1 C:27-45,46-55,115-126,127-133 2v4y d2v4yc1 C:30-48,49-58,118-129,130-136 2buf d2bufj1 J:41-59,61-67,166-177,178-183 2v4y d2v4ya1 A:30-48,49-58,118-129,130-136 2v4y d2v4yf1 F:30-48,49-58,118-129,130-136 2v4y d2v4ye1 E:30-48,49-58,118-129,130-136 2bnf d2bnfa1 A:30-48,49-58,118-129,130-136 2v4y d2v4yb1 B:30-48,49-58,118-129,130-136 2v4y d2v4yd1 D:30-48,49-58,118-129,130-136 1ybd d1ybda1 A:30-48,49-58,118-129,130-136 1oh9 d1oh9a_ A:16-35,37-43,129-140,141-147 1gs5 d1gs5a_ A:16-35,37-43,129-140,141-147 2buf d2bufc1 C:41-59,61-68,166-177,178-183 2hmf d2hmfc1 C:14-33,34-43,173-185,186-192 2hmf d2hmfd1 D:14-33,34-43,173-185,186-192 2hmf d2hmfa1 A:14-33,34-43,173-185,186-192 2hmf d2hmfb1 B:14-33,34-43,173-185,186-192 1oha d1ohaa_ A:16-35,37-43,129-140,141-147 1z9d d1z9db1 B:28-46,47-56,116-127,128-134 1z9d d1z9dc1 C:28-46,47-56,116-127,128-134 1z9d d1z9da1 A:28-46,47-56,116-127,128-134 1ohb d1ohba_ A:16-34,37-43,129-140,141-146 1gsj d1gsja_ A:16-34,37-43,129-140,141-146 2cdq d2cdqb1 B:40-55,58-67,188-207,208-214 2buf d2bufe1 E:41-59,61-68,166-177,178-183 2cdq d2cdqa1 A:40-55,58-67,188-207,208-214 6. c.123.1 CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) consist of two different alpha/beta domains; N-terminal domain has a SurE-like topology with a left-handed beta-alpha-beta unit 1pt5 d1pt5a_ A:108-117,118-125,166-191,192-199 1pt5 d1pt5b_ B:108-117,118-125,166-191,192-199 1q6y d1q6ya_ A:110-119,120-127,168-193,194-201 1pt8 d1pt8b_ B:108-117,118-125,166-191,192-199 1pt8 d1pt8a_ A:108-117,118-125,166-191,192-199 1p5r d1p5rb_ B:108-117,118-125,166-191,192-199 1vgr d1vgrb_ B:108-117,118-125,166-191,192-199 1vgq d1vgqb_ B:108-117,118-125,166-191,192-199 1vgq d1vgqa_ A:108-117,118-125,166-191,192-199 1t3z d1t3zb_ B:108-117,118-125,166-191,192-199 1p5r d1p5ra_ A:108-117,118-125,166-191,192-199 2vjk d2vjka1 A:108-117,118-125,166-191,192-199 2vjm d2vjma1 A:108-117,118-125,166-191,192-199 1pt7 d1pt7a_ A:108-117,118-125,166-191,192-199 1t3z d1t3za_ A:108-117,118-125,166-191,192-199 1xk6 d1xk6c1 C:107-116,117-124,166-191,192-199 1xk6 d1xk6d1 D:107-116,117-124,166-191,192-199 1vgr d1vgra_ A:108-117,118-125,166-191,192-199 1p5h d1p5hb_ B:108-117,118-125,166-191,192-199 1t4c d1t4ca_ A:108-117,118-125,166-191,192-199 1pqy d1pqya_ A:110-119,120-127,168-193,194-201 1pt7 d1pt7b_ B:108-117,118-125,166-191,192-199 1xk6 d1xk6b1 B:107-116,117-124,166-191,192-199 2vjl d2vjla1 A:108-117,118-125,166-191,192-199 1xk7 d1xk7c1 C:107-116,117-124,166-191,192-199 1t4c d1t4cb_ B:108-117,118-125,166-191,192-199 2vjk d2vjkb1 B:108-117,118-125,166-191,192-199 1xk7 d1xk7a1 A:107-116,117-124,166-191,192-199 1xk6 d1xk6a1 A:107-116,117-124,166-191,192-199 1xvu d1xvua1 A:107-116,117-124,166-191,192-199 1p5h d1p5ha_ A:108-117,118-125,166-191,192-199 1xk7 d1xk7b1 B:107-116,117-124,166-191,192-199 1q7e d1q7ea_ A:110-119,120-127,168-193,194-201 1xa3 d1xa3a_ A:107-116,117-124,166-191,192-199 1xa3 d1xa3b_ B:107-116,117-124,166-191,192-199 1xa4 d1xa4a_ A:107-116,117-124,166-191,192-199 1xvv d1xvva1 A:107-116,117-124,166-191,192-199 1xa4 d1xa4b_ B:107-116,117-124,166-191,192-199 2gd6 d2gd6b1 B:95-104,105-112,151-179,180-187 2vjl d2vjlb1 B:108-117,118-125,166-191,192-199 2gce d2gcea1 A:95-104,105-112,151-179,180-187 2gce d2gcec1 C:95-104,105-112,151-179,180-187 2gd6 d2gd6a1 A:95-104,105-112,151-179,180-187 2gci d2gcia1 A:95-104,105-112,151-179,180-187 2gci d2gcic1 C:95-104,105-112,151-179,180-187 2gd6 d2gd6c1 C:95-104,105-112,151-179,180-187 2gd6 d2gd6d1 D:95-104,105-112,151-179,180-187 2gd0 d2gd0c1 C:95-104,105-112,151-179,180-187 1xvt d1xvta1 A:107-116,117-124,166-191,192-199 1x74 d1x74c1 C:95-104,105-112,151-179,180-187 2gce d2gced1 D:95-104,105-112,151-179,180-187 1x74 d1x74a1 A:95-104,105-112,151-179,180-187 2gd0 d2gd0a1 A:95-104,105-112,151-179,180-187 1x74 d1x74d1 D:95-104,105-112,151-179,180-187 2gd0 d2gd0b1 B:95-104,105-112,151-179,180-187 1x74 d1x74b1 B:95-104,105-112,151-179,180-187 2gd2 d2gd2b1 B:95-104,105-112,151-179,180-187 2gd0 d2gd0d1 D:95-104,105-112,151-179,180-187 2gd2 d2gd2d1 D:95-104,105-112,151-179,180-187 2gci d2gcid1 D:95-104,105-112,151-179,180-187 2gd2 d2gd2a1 A:95-104,105-112,151-179,180-187 2gd2 d2gd2c1 C:95-104,105-112,151-179,180-187 2gci d2gcib1 B:95-104,105-112,151-179,180-187 2gce d2gceb1 B:95-104,105-112,151-179,180-187 8. e.51.1 Urocanase Urocanase 3 domains; d1: alpha+beta [alpha(2)-beta(3); mixed sheet: 213]; d2: alpha/beta of the NAD(P)-binding Rossmann-fold superfamily (scop_sf 51735, most similar to scop_fa 51883 and scop_fa 51736); d3: alpha+beta of the glutamine synthetase/guanido kinase fold (scop_cf 55930); d1 and d3 form a single beta-sheet 1x87 d1x87a_ A:171-185,186-193,213-228,230-237 1x87 d1x87b_ B:171-185,186-193,213-228,230-237 1uwk d1uwka_ A:176-190,191-198,218-233,235-242 1uwl d1uwlb_ B:176-190,191-198,218-233,235-242 1uwk d1uwkb_ B:176-190,191-198,218-233,235-242 1w1u d1w1ua_ A:176-190,191-198,218-233,235-242 1w1u d1w1ub_ B:176-190,191-198,218-233,235-242 1uwl d1uwla_ A:176-190,191-198,218-233,235-242 12. c.88.1 Glutaminase/Asparaginase Glutaminase/Asparaginase consists of two non-similar alpha/beta domains, 3 layers (a/b/a) each ! Domain 1 has mixed beta-sheet of 6 strands, order 213456, strand 6 is antiparallel to the rest; left-handed crossover connection between strands 4 and 5 ! Domain 2 has parallel beta-sheet of 4 strands, order 1234 2ocd d2ocda1 A:93-106,110-116,126-143,145-152 2ocd d2ocdb1 B:93-106,110-116,126-143,145-152 2ocd d2ocdc1 C:93-106,110-116,126-143,145-152 2ocd d2ocdd1 D:93-106,110-116,126-143,145-152 1agx d1agxa_ A:94-106,111-116,126-141,149-154 1djp d1djpb_ B:3102-3115,3119-3124,3134-3149,3157-3162 3pga d3pga1_ 1:102-115,119-124,134-149,157-162 3pga d3pga4_ 4:102-115,119-124,134-149,157-162 1wsa d1wsab_ B:95-107,112-117,127-142,150-155 3pga d3pga3_ 3:102-115,119-124,134-149,157-162 3pga d3pga2_ 2:102-115,119-124,134-149,157-162 1zq1 d1zq1a2 A:180-192,197-203,213-228,233-239 1wsa d1wsaa_ A:95-107,112-117,127-142,150-155 1ihd d1ihdc_ C:91-103,106-113,123-139,146-151 2d6f d2d6fa2 A:179-192,195-201,211-226,231-237 1zq1 d1zq1b2 B:180-192,197-203,213-228,233-239 2d6f d2d6fb2 B:179-192,195-201,211-226,231-237 1ihd d1ihda_ A:91-103,108-113,123-139,146-151 1jja d1jjad_ D:91-103,108-113,123-139,146-151 1jja d1jjae_ E:91-103,108-113,123-139,146-151 1jja d1jjac_ C:91-103,108-113,123-139,146-151 1jja d1jjaf_ F:91-103,108-113,123-139,146-151 4eca d4ecac_ C:91-104,108-113,123-139,146-151 1djo d1djoa_ A:1102-1115,1119-1124,1134-1150,1157-1162 1jja d1jjab_ B:91-103,108-113,123-139,146-151 1djo d1djob_ B:3102-3115,3119-3124,3134-3150,3157-3162 4pga d4pgaa_ A:102-115,119-124,134-150,157-162 4eca d4ecaa_ A:91-104,108-113,123-139,146-151 1ho3 d1ho3a_ A:91-103,108-113,123-139,146-151 1nns d1nnsa_ A:91-103,108-113,123-139,146-151 1jja d1jjaa_ A:91-103,108-113,123-139,146-151 1jaz d1jaza_ A:91-103,108-113,123-139,146-151 1ho3 d1ho3b_ B:91-103,108-113,123-139,146-151 1nns d1nnsb_ B:91-103,108-113,123-139,146-151 1jaz d1jazb_ B:91-103,108-113,123-139,146-151 1hfw d1hfwc_ C:97-109,114-119,129-144,152-157 1hfw d1hfwb_ B:97-109,114-119,129-144,152-157 1hfw d1hfwa_ A:97-109,114-119,129-144,152-157 1hg0 d1hg0c_ C:97-109,114-119,129-144,152-157 3eca d3ecad_ D:91-103,108-113,123-139,146-151 1hg0 d1hg0b_ B:97-109,114-119,129-144,152-157 1hfw d1hfwd_ D:97-109,114-119,129-144,152-157 3eca d3ecab_ B:91-103,108-113,123-139,146-151 1djp d1djpa_ A:1102-1114,1119-1124,1134-1150,1157-1162 1hg0 d1hg0d_ D:97-109,114-119,129-144,152-157 1hg0 d1hg0a_ A:97-109,114-119,129-144,152-157 3eca d3ecac_ C:91-103,108-113,123-139,146-151 1o7j d1o7ja_ A:97-109,114-119,129-144,152-157 1o7j d1o7jc_ C:97-109,114-119,129-144,152-157 4pga d4pgab_ B:102-114,119-124,134-150,157-162 1o7j d1o7jd_ D:97-109,114-119,129-144,152-157 4eca d4ecad_ D:91-103,108-113,123-139,146-151 1o7j d1o7jb_ B:97-109,114-119,129-144,152-157 4eca d4ecab_ B:91-103,108-113,123-139,146-151 1hfk d1hfka_ A:97-109,114-119,129-144,152-157 1jsr d1jsra_ A:97-109,114-119,129-144,152-157 1hfj d1hfjc_ C:97-109,114-119,129-145,152-157 1hg1 d1hg1a_ A:97-109,114-119,129-144,152-157 1jsl d1jsla_ A:97-109,114-119,129-144,152-157 1jsr d1jsrd_ D:97-109,114-119,129-144,152-157 1jsl d1jslb_ B:97-109,114-119,129-144,152-157 1hg1 d1hg1b_ B:97-109,114-119,129-144,152-157 1jsr d1jsrb_ B:97-109,114-119,129-144,152-157 1jsl d1jsld_ D:97-109,114-119,129-144,152-157 1hg1 d1hg1d_ D:97-109,114-119,129-144,152-157 1hfj d1hfja_ A:97-109,114-119,129-145,152-157 3eca d3ecaa_ A:91-103,108-113,123-139,146-151 1hfk d1hfkc_ C:97-109,112-119,129-144,152-157 1jsl d1jslc_ C:97-109,114-119,129-145,152-157 1jsr d1jsrc_ C:97-109,114-119,129-145,152-157 1hg1 d1hg1c_ C:97-109,114-119,129-145,152-157 13. c.76.1 Alkaline phosphatase-like Alkaline phosphatase-like core:3 layers: a/b/a; mixed beta-sheet of 8 strands, order 43516728, strand 7 is antiparallel to the rest 1ajb d1ajba_ A:190-199,201-207,239-247,253-261 1khl d1khla_ A:190-199,201-207,239-247,253-261 1khl d1khlb_ B:190-199,201-207,239-247,253-261 1ed9 d1ed9a_ A:190-199,201-207,239-247,253-261 1khk d1khkb_ B:190-199,201-207,239-247,253-260 1ajd d1ajda_ A:190-199,201-207,239-247,253-261 1y6v d1y6va1 A:190-199,201-207,239-247,253-261 1khn d1khna_ A:190-199,201-207,239-247,253-261 1ely d1elya_ A:190-199,201-207,239-247,254-260 1elx d1elxb_ B:190-199,201-207,239-247,253-261 1khn d1khnb_ B:190-199,201-207,239-247,253-261 1ali d1alia_ A:190-199,201-207,239-247,253-261 1ely d1elyb_ B:190-199,201-207,239-247,254-260 1khk d1khka_ A:190-199,201-207,239-247,253-261 1kh5 d1kh5a_ A:190-199,201-207,239-247,253-261 1kh9 d1kh9a_ A:190-199,201-207,239-247,253-261 1ajc d1ajca_ A:190-199,201-207,239-247,253-261 1ew8 d1ew8b_ B:190-199,201-207,239-247,253-261 1kh9 d1kh9b_ B:190-199,201-207,239-247,253-261 1kh5 d1kh5b_ B:690-699,701-707,739-747,753-761 1b8j d1b8ja_ A:190-199,201-207,239-247,253-261 1ajc d1ajcb_ B:190-199,201-207,239-247,253-261 1ali d1alib_ B:190-199,201-207,239-247,253-261 1aja d1ajab_ B:190-199,201-207,239-247,253-261 1elx d1elxa_ A:190-199,201-207,239-247,253-261 1ajb d1ajbb_ B:190-199,201-207,239-247,253-261 1khj d1khja_ A:190-199,201-207,239-247,253-261 1b8j d1b8jb_ B:190-199,201-207,239-247,253-261 1hqa d1hqaa_ A:190-199,201-207,239-247,253-261 1urb d1urba_ A:190-199,201-207,239-247,253-261 2anh d2anha_ A:190-199,201-207,239-247,253-261 1ani d1ania_ A:190-199,201-207,239-247,253-261 1hqa d1hqab_ B:190-199,201-207,239-247,253-261 1ura d1uraa_ A:190-199,201-207,239-247,253-261 1ura d1urab_ B:190-199,201-207,239-247,253-261 1urb d1urbb_ B:190-199,201-207,239-247,253-261 1hjk d1hjka_ A:190-199,201-207,239-247,254-261 1alh d1alhb_ B:190-199,201-207,239-247,253-261 1alh d1alha_ A:190-199,201-207,239-247,253-261 1ed9 d1ed9b_ B:690-699,701-707,739-747,753-761 1ed8 d1ed8a_ A:190-199,201-207,239-247,253-261 1ani d1anib_ B:190-199,201-207,239-247,253-261 1ew9 d1ew9b_ B:190-199,201-207,239-247,253-261 1anj d1anja_ A:190-199,201-207,239-247,253-261 1ew9 d1ew9a_ A:190-199,201-207,239-247,253-261 1hjk d1hjkb_ B:190-199,201-207,239-247,254-261 2anh d2anhb_ B:190-199,201-207,239-247,253-261 1y6v d1y6vb1 B:190-199,201-207,239-247,253-261 1ew8 d1ew8a_ A:190-199,201-207,239-247,253-261 1alj d1alja_ A:190-199,201-207,239-247,253-261 1ed8 d1ed8b_ B:690-699,701-707,739-747,753-761 1anj d1anjb_ B:190-199,201-207,239-247,253-261 1aja d1ajaa_ A:190-199,201-207,239-246,253-261 1alj d1aljb_ B:190-199,201-207,239-247,253-261 1zed d1zeda1 A:185-195,197-203,249-260,263-271 1alk d1alkb_ B:190-199,201-207,239-247,253-261 1zef d1zefa1 A:185-195,197-203,249-260,263-271 1ajd d1ajdb_ B:190-199,201-207,239-247,253-260 1khj d1khjb_ B:190-199,201-207,239-246,253-261 1kh7 d1kh7b_ B:190-199,201-207,239-246,253-261 1ew2 d1ew2a_ A:185-195,197-203,249-260,263-271 1kh4 d1kh4b_ B:190-199,201-207,239-246,253-261 1elz d1elzb_ B:190-199,201-207,239-246,253-261 2glq d2glqa1 A:185-195,197-203,249-260,263-271 1alk d1alka_ A:190-199,201-207,239-246,253-261 1elz d1elza_ A:190-199,201-207,239-246,253-261 1kh7 d1kh7a_ A:190-199,201-207,239-246,253-261 1kh4 d1kh4a_ A:190-199,201-207,239-246,253-260 1zeb d1zeba1 A:185-195,197-202,249-260,263-269 14. c.138.1 Indigoidine synthase A-like Indigoidine synthase A-like core: 3 layers, a/b/a; parallel beta-sheet of 7 strands, order 2134756 1vkm d1vkme_ E:128-137,137-144,191-206,208-215 1vkm d1vkmc_ C:128-137,137-144,191-206,208-215 1vkm d1vkmf_ F:128-137,137-144,191-206,208-215 1vkm d1vkmd_ D:128-137,137-144,191-206,208-215 1vkm d1vkma_ A:128-137,137-144,191-206,208-215 1vkm d1vkmb_ B:128-137,137-142,191-206,208-215 17. c.106.1 SurE-like some topological similarity to the N-terminal domain of Glutaminase/Asparaginase family ! SurE-like 3 layers: a/b/a; mixed beta-sheet of 9 strands, order 342156798; strands 3, 8 and 9 are antiparallel to the rest; left-handed crossover connection between strands 6 and 7 1ilv d1ilva_ A:107-120,122-130,135-150,159-167 1j9l d1j9lb_ B:107-120,122-130,135-150,159-167 1j9j d1j9jb_ B:107-120,122-130,135-150,159-167 1j9k d1j9kb_ B:107-120,122-130,135-150,159-167 1j9k d1j9ka_ A:107-120,122-130,135-150,159-167 1ilv d1ilvb_ B:107-120,122-130,135-151,159-167 23. c.112.1 Glycerol-3-phosphate (1)-acyltransferase some topological similarity to the dihydrofolate reductase fold ! Glycerol-3-phosphate (1)-acyltransferase 3 layers: a/b/a; mixed beta-sheet of 9 strands, order 918736452; strands 1, 2 and 8 are antiparallel to the rest 1iuq d1iuqa_ A:116-130,130-138,198-223,223-230 1k30 d1k30a_ A:116-130,130-138,198-223,223-230 24. c.127.1 F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) the sheet topology is similar to those of the Periplasmic binding protein-like I domains ! F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213456 1u6j d1u6jc1 C:105-113,114-120,152-171,179-184 1u6j d1u6ji1 I:105-113,114-120,152-171,179-184 1u6i d1u6ic1 C:105-113,114-120,152-171,179-184 1u6i d1u6ii1 I:105-113,114-120,152-171,179-184 1u6j d1u6jf1 F:105-113,114-120,152-171,180-184 1u6j d1u6jk1 K:105-113,114-120,152-171,180-184 1u6j d1u6je1 E:105-113,114-120,152-171,180-184 1u6i d1u6ik1 K:105-113,114-120,152-171,180-184 1u6i d1u6ie1 E:105-113,114-120,152-171,180-184 1u6i d1u6if1 F:105-113,114-120,152-171,180-184 1u6i d1u6il1 L:105-113,114-120,152-171,180-184 1u6j d1u6jl1 L:105-113,114-120,152-171,180-184 1u6j d1u6jd1 D:105-113,114-120,152-171,180-184 1u6k d1u6kb1 B:105-113,114-120,152-171,180-184 1qv9 d1qv9b_ B:105-113,114-120,152-171,180-184 1u6j d1u6jj1 J:105-113,114-120,152-171,180-184 1u6i d1u6id1 D:105-113,114-120,152-171,180-184 1u6i d1u6ij1 J:105-113,114-120,152-171,180-184 1u6i d1u6ih1 H:105-113,114-120,152-171,180-184 1u6i d1u6ib1 B:105-113,114-120,152-171,180-184 1qv9 d1qv9c_ C:105-113,114-120,152-171,180-184 1u6k d1u6kc1 C:105-113,114-120,152-171,180-184 1u6j d1u6jh1 H:105-113,114-120,152-171,180-184 1u6j d1u6jb1 B:105-113,114-120,152-171,180-184 1u6i d1u6ig1 G:105-113,114-120,152-171,180-184 1u6i d1u6ia1 A:105-113,114-120,152-171,180-184 1u6j d1u6ja1 A:105-113,114-120,152-171,180-184 1u6j d1u6jg1 G:105-113,114-120,152-171,180-184 1qv9 d1qv9a_ A:105-113,114-120,152-171,180-184 1u6k d1u6ka1 A:105-113,114-120,152-171,180-184 31. c.150.1 EreA/ChaN-like there are four conserved residues in the putative active site: two His and two Glu EreA/ChaN-like Core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order:51423; 2g5g d2g5gx1 X:28-39,40-46,183-208,210-217 2ebf d2ebfx2 X:897-910,910-916,1011-1032,1036-1042 2ebh d2ebhx2 X:897-910,910-916,1011-1032,1036-1042 2ec5 d2ec5a2 A:897-910,910-916,1011-1031,1036-1042 2ec5 d2ec5b2 B:896-910,910-916,1011-1031,1036-1042