1. c.8.4 PA domain
The "swivelling" beta/beta/alpha domain 3 layers: b/b/a; the central sheet is parallel, and the other one is antiparallel; there are some variations in topology ! this domain is thought to be mobile in most multi-domain proteins known to contain it
1cx8 d1cx8e2 E:198-204,251-259,338-349,371-378
1cx8 d1cx8c2 C:198-204,251-259,338-349,371-378
1cx8 d1cx8f2 F:198-204,251-259,338-349,371-378
1cx8 d1cx8g2 G:198-205,251-259,338-349,371-378
2nsu d2nsub2 B:198-205,251-259,338-349,371-378
1cx8 d1cx8b2 B:198-205,251-259,338-349,371-378
1cx8 d1cx8d2 D:198-204,251-259,338-349,371-378
1cx8 d1cx8a2 A:198-205,251-259,338-349,371-378
2nsu d2nsua2 A:198-205,251-259,338-349,371-378
1cx8 d1cx8h2 H:198-204,251-259,338-349,371-378
1cx8 d1cx8e2 E:198-204,231-237,338-349,371-378
1cx8 d1cx8d2 D:198-204,231-237,338-349,371-378
1cx8 d1cx8h2 H:198-204,231-237,338-349,371-378
1cx8 d1cx8c2 C:198-204,231-237,338-349,371-378
1cx8 d1cx8g2 G:198-205,231-237,338-349,371-378
1cx8 d1cx8b2 B:198-205,231-237,338-349,371-378
2nsu d2nsub2 B:198-205,231-237,338-349,371-378
1cx8 d1cx8f2 F:198-204,231-237,338-349,371-378
1cx8 d1cx8a2 A:198-205,231-237,338-349,371-378
2nsu d2nsua2 A:198-205,231-237,338-349,371-378
1de4 d1de4f2 F:198-205,251-259,338-349,371-378
1de4 d1de4i2 I:198-205,252-259,338-349,371-378
2pvv d2pvva2 A:126-133,199-205,298-309,339-347
2pvv d2pvva2 A:126-133,173-178,298-309,339-347
2or4 d2or4a2 A:126-133,199-205,298-309,339-347
3bi1 d3bi1a2 A:126-133,199-205,298-309,339-347
3bhx d3bhxa2 A:126-133,199-205,298-309,339-347
2pvw d2pvwa2 A:126-133,199-205,298-309,339-347
2oot d2oota2 A:126-133,199-205,298-309,339-347
3bi0 d3bi0a2 A:126-133,199-205,298-309,339-347
2or4 d2or4a2 A:126-133,173-178,298-309,339-347
3bi0 d3bi0a2 A:126-133,173-178,298-309,339-347
3bhx d3bhxa2 A:126-133,173-178,298-309,339-347
2c6g d2c6ga2 A:126-133,199-205,298-309,340-347
2jbj d2jbja2 A:126-133,199-205,298-309,339-347
3bi1 d3bi1a2 A:126-133,173-178,298-309,339-347
2c6g d2c6ga2 A:126-133,173-178,298-309,340-347
2jbj d2jbja2 A:126-133,173-178,298-309,339-347
2pvw d2pvwa2 A:126-133,173-178,298-309,339-347
2oot d2oota2 A:126-133,173-178,298-309,339-347
2cij d2cija2 A:126-133,199-205,298-309,339-347
2c6c d2c6ca2 A:126-133,199-205,298-309,339-347
2jbk d2jbka2 A:126-133,199-205,298-309,339-347
2c6c d2c6ca2 A:126-133,173-178,298-309,339-347
2cij d2cija2 A:126-133,173-178,298-309,339-347
1de4 d1de4c2 C:198-206,251-259,338-349,370-378
2c6p d2c6pa2 A:126-133,199-205,298-309,342-347
1z8l d1z8lb2 B:126-133,196-205,298-309,340-347
1z8l d1z8la2 A:126-133,196-205,298-309,340-347
1z8l d1z8lc2 C:126-133,196-205,298-309,340-347
1z8l d1z8ld2 D:126-133,196-205,298-309,340-347
2c6p d2c6pa2 A:126-133,173-178,298-309,342-347
2. i.21.1 Transferrin receptor-transferrin complex
Transferrin receptor-transferrin complex
1suv d1suvb_ B:198-205,251-259,338-349,371-378
1suv d1suva_ A:198-205,251-259,338-349,371-378
1suv d1suvb_ B:198-205,231-237,338-349,371-378
1suv d1suva_ A:198-205,231-237,338-349,371-378
3. b.67.1 Tachylectin-2
5-bladed beta-propeller consists of five 4-stranded beta-sheet motifs; meander
1tl2 d1tl2a_ A:6-12,184-191,225-232,231-236
4. b.50.1 Acid proteases
Acid proteases barrel, closed; n=6, S=10, complex topology
2zhv d2zhva1 A:202-209,232-237,237-253,282-289
1tqf d1tqfa_ A:202-209,232-237,237-253,282-289
2p4j d2p4ja1 A:202-209,232-237,237-253,282-289
2ohm d2ohma1 A:202-209,232-237,237-253,282-289
2ohq d2ohqa1 A:202-209,232-237,237-253,282-289
2ohl d2ohla1 A:202-209,232-237,237-253,282-289
2g94 d2g94b1 B:202-209,232-237,237-253,282-289
2ohp d2ohpa1 A:202-209,232-237,237-253,282-289
2g94 d2g94a1 A:202-209,232-237,237-253,282-289
2g94 d2g94d1 D:202-209,232-237,237-253,282-289
2g94 d2g94c1 C:202-209,232-237,237-253,282-289
1w51 d1w51a_ A:202-209,232-237,237-253,282-289
2ohn d2ohna1 A:202-209,232-237,237-253,282-289
2ohu d2ohua1 A:202-209,232-237,237-253,282-289
2fdp d2fdpa1 A:202-209,232-237,237-253,281-289
2p4j d2p4jb1 B:202-209,233-237,237-253,282-289
1fkn d1fknb_ B:202-209,233-237,237-253,282-289
1xn2 d1xn2c1 C:202-209,233-237,237-253,282-289
1fkn d1fkna_ A:202-209,233-237,237-253,282-289
3ckr d3ckrb1 B:202-209,233-237,237-253,282-289
2qu3 d2qu3a1 A:264-271,295-299,299-315,344-351
2p4j d2p4jd1 D:202-209,233-237,237-253,282-289
2oht d2ohta1 A:202-209,232-237,237-253,282-289
1xn2 d1xn2d1 D:202-209,233-237,237-253,282-289
1w50 d1w50a_ A:202-209,233-237,237-253,282-289
2va5 d2va5a1 A:202-209,233-237,237-253,282-289
1xn2 d1xn2a1 A:202-209,233-237,237-253,282-289
2p4j d2p4jc1 C:202-209,233-237,237-253,282-289
1xn2 d1xn2b1 B:202-209,233-237,237-253,282-289
3ckp d3ckpb1 B:202-209,233-237,237-253,282-289
1xn3 d1xn3a1 A:202-209,233-237,237-253,282-289
1ym4 d1ym4a1 A:202-209,233-237,237-253,282-289
1sgz d1sgza_ A:202-209,233-237,237-253,282-289
2qu2 d2qu2a1 A:264-271,295-299,299-315,344-351
3ckp d3ckpc1 C:202-209,233-237,237-253,282-289
1sgz d1sgzb_ B:202-209,233-237,237-253,282-289
2hm1 d2hm1a1 A:202-209,233-237,237-253,282-289
2fdp d2fdpb1 B:202-209,233-237,237-253,282-289
3ckp d3ckpa1 A:202-209,233-237,237-253,282-289
2p83 d2p83c1 C:202-209,233-237,237-253,281-289
1xs7 d1xs7d_ D:202-209,233-237,237-253,282-289
2p83 d2p83b1 B:202-209,233-237,237-253,281-289
2hiz d2hizc1 C:202-209,233-237,237-253,281-289
2zhs d2zhsa1 A:202-209,233-237,237-253,281-289
1ym2 d1ym2c1 C:202-209,233-237,237-253,282-289
2fdp d2fdpc1 C:202-209,233-237,237-253,281-289
1ym2 d1ym2b1 B:202-209,233-237,237-253,282-289
2p83 d2p83a1 A:202-209,233-237,237-253,281-289
3ckr d3ckrc1 C:202-209,233-237,237-253,282-289
5. c.8.3 Carbamoyl phosphate synthetase, small subunit N-terminal domain
The "swivelling" beta/beta/alpha domain 3 layers: b/b/a; the central sheet is parallel, and the other one is antiparallel; there are some variations in topology ! this domain is thought to be mobile in most multi-domain proteins known to contain it
1ce8 d1ce8f1 F:3-10,49-56,114-126,128-135
1a9x d1a9xb1 B:1503-1510,1550-1556,1614-1626,1628-1635
1kee d1keeb1 B:3-10,50-56,114-126,128-135
1t36 d1t36h1 H:3-10,50-56,114-126,128-135
1kee d1keef1 F:3-10,49-56,114-126,128-135
1c3o d1c3oh1 H:3-10,49-56,114-126,128-135
6. b.52.1 Barwin-like endoglucanases
Double psi beta-barrel barrel, closed; n=6, S=10; complex topology with crossover (psi) loops
1bw4 d1bw4a_ A:65-73,89-94,94-103,112-122
7. d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) N-terminal residue provides two catalytic groups, nucleophile and proton donor !
Ntn hydrolase-like 4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
2pva d2pvad_ D:27-35,34-40,101-113,314-318
3pva d3pvae_ E:27-35,34-40,101-113,314-318
3pva d3pvad_ D:27-35,34-40,101-113,314-318
3pva d3pvag_ G:27-35,34-40,101-113,314-318
3pva d3pvaa_ A:27-35,34-40,101-113,314-318
3pva d3pvaf_ F:27-35,34-40,101-113,314-318
3pva d3pvab_ B:27-35,34-40,101-113,314-318
3pva d3pvah_ H:27-35,34-40,101-113,314-318
3pva d3pvac_ C:27-35,34-40,101-113,314-318
2pva d2pvaa_ A:27-35,34-40,101-113,314-318
2pva d2pvab_ B:27-35,34-40,101-113,314-318
2pva d2pvac_ C:27-35,34-39,101-113,314-318
8. b.29.1 Concanavalin A-like lectins/glucanases
Concanavalin A-like lectins/glucanases sandwich; 12-14 strands in 2 sheets; complex topology
2afj d2afja1 A:104-111,175-182,190-198,199-207
9. d.131.1 DNA clamp
DNA clamp contains two helices and two beta sheets ! duplication: fold has internal pseudo two-fold symmetry
1rwz d1rwza2 A:44-53,186-194,194-206,231-240
1rxm d1rxma2 A:44-53,186-194,194-206,231-240
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 91 (enumeration index: query69) of S4
3n4l B:208-215,239-243,243-259,288-295
3rsv A:202-209,232-237,237-253,282-289
2rg2 A:28-36,35-43,104-113,314-318
2rf8 B:28-36,35-43,104-113,314-318
3in4 A:264-271,295-299,299-315,344-351
2wf3 A:263-270,294-298,298-314,343-350
2oah A:202-209,233-237,237-253,282-289
2rlc A:28-36,35-41,104-113,314-318
3buh A:202-209,232-237,237-253,282-289
3sjg A:126-133,173-178,298-309,339-347
3sjg A:126-133,199-205,298-309,339-347
3bug A:202-209,233-237,237-253,282-289
3fec A:116-123,189-195,288-299,330-337
3fec A:116-123,163-168,288-299,330-337
2ykd A:144-157,203-212,229-238,245-258
2zjl A:202-209,232-237,237-253,281-289
3s7l A:264-271,295-299,299-315,344-351
2xfk A:263-270,294-298,298-314,343-350
2vj6 A:263-270,294-298,298-314,343-350
2ze1 A:264-271,295-299,299-315,344-351
2zjk B:202-209,233-237,237-253,282-289
2wf0 A:263-270,294-298,298-314,343-350
2xqe C:58-64,111-116,148-159,159-167
2qzl A:202-209,232-237,237-253,282-289
2q15 A:202-209,232-237,237-253,282-289
2z0l D:56-64,237-244,244-257,287-296
2z0l C:56-64,237-244,244-257,287-296
3msk A:202-209,232-237,237-253,282-289
3lhg A:264-271,294-299,299-315,344-351
3hcq A:110-124,147-153,156-169,200-206
2zjh A:202-209,232-237,237-253,282-289
3a1j B:51-60,227-233,233-245,269-278
2kqa A:59-66,82-86,86-95,105-110
3ixk C:250-257,280-285,285-301,330-337
3ixk A:250-257,281-285,285-301,329-337
2bjg B:28-36,35-43,104-113,314-318
2bjg A:28-36,35-43,104-113,314-318
3in3 A:264-271,295-299,299-315,344-351
3izu C:59-64,113-117,148-159,160-165
3rsx A:202-209,232-237,237-253,282-289
3ixj C:250-257,281-285,285-301,330-337
3ixj A:250-257,281-285,285-301,330-337
3ixj B:250-257,280-285,285-301,329-337
3d7g A:126-133,173-178,298-309,339-347
3d7g A:126-133,199-205,298-309,339-347
2rej A:110-124,147-153,156-169,201-206
2is0 A:202-209,232-237,237-253,282-289
2quy A:27-35,34-40,101-113,314-318
2quy B:27-35,34-40,101-113,314-318
2quy G:27-35,34-40,101-113,314-318
2quy D:27-35,34-40,101-113,314-318
2quy F:27-35,34-40,101-113,314-318
2quy H:27-35,34-39,101-113,314-318
2quy C:27-35,34-40,101-113,314-318
2quy E:27-35,34-40,101-113,314-318
3rtm A:202-209,233-237,237-253,282-289
2vie A:263-270,294-298,298-314,343-350
1vc3 B:40-50,68-73,72-80,81-94
2vnn A:263-270,294-298,298-314,343-350
3p16 B:62-70,200-207,207-219,246-253
3p16 F:62-70,199-207,207-217,246-253
3p16 D:62-70,200-207,207-218,246-253
3ivh A:263-270,294-298,298-314,343-350
3ind A:264-271,295-299,299-315,344-351
2b8v A:202-209,232-237,237-253,282-289
2wf1 A:263-270,294-298,298-314,343-350
3fee A:116-123,163-168,288-299,330-337
3fee A:116-123,189-195,288-299,330-337
2zdz A:264-271,295-299,299-315,344-351
3ff3 A:116-123,189-195,288-299,330-337
3ff3 A:116-123,163-168,288-299,330-337
2zji A:202-209,232-237,237-253,282-289
3inh A:264-271,295-299,299-315,344-351
3k5c C:202-209,233-237,237-253,281-289
3k5c A:202-209,233-237,237-253,281-289
3k5c B:202-209,233-237,237-253,281-289
3izt C:59-65,113-117,148-159,159-165
3kyr C:202-209,233-237,237-251,282-289
3kyr B:202-209,233-237,237-253,281-289
3kyr A:202-209,233-237,237-253,281-289
2irz A:202-209,233-237,237-253,282-289
3msj C:202-209,232-237,237-253,282-289
3msj A:202-209,233-237,237-253,282-289
3msj B:202-209,232-237,237-253,282-289
2wf4 A:263-270,294-298,298-314,343-350
3ooz A:264-271,295-299,299-315,344-351
2wf2 A:263-270,294-298,298-314,343-350
3l3a A:264-271,294-299,299-315,344-351
2vkm B:202-209,232-237,237-253,282-289
2vkm A:202-209,232-237,237-253,282-289
2vkm D:202-209,232-237,237-253,282-289
2vkm C:202-209,232-237,237-253,282-289
3l59 A:263-270,294-298,298-314,343-350
3i25 A:202-209,232-237,237-253,281-289
3i25 C:202-209,232-237,237-253,282-289
3i25 B:202-209,232-237,237-253,282-289
3pi5 A:202-209,233-237,237-253,281-289
3pi5 B:202-209,232-237,237-253,281-289
3fed A:116-123,189-195,288-299,330-337
3fed A:116-123,163-168,288-299,330-337
2avt A:183-192,324-330,330-342,367-374
2avt B:183-192,324-330,330-342,367-374
2gaa A:133-138,155-161,191-208,235-240
3hw1 B:202-209,233-237,237-253,282-289
3hw1 A:202-209,233-237,237-253,282-289
2vqp A:140-153,199-208,225-234,241-254
3skg B:202-209,233-237,237-253,282-289
2ph8 A:202-209,233-237,237-253,282-289
2xfj A:263-270,294-298,298-314,343-350
3s2o A:202-209,232-237,237-253,282-289
3k5g A:202-209,233-237,237-253,281-289
3k5g B:202-209,233-237,237-253,282-289
3k5g C:202-209,233-237,237-253,282-289
2xej A:126-133,173-178,298-309,339-347
2xej A:126-133,199-205,298-309,339-347
3l5d B:263-270,294-298,298-314,343-350
3l5d A:263-270,294-298,298-314,343-350
3bxm A:126-133,173-178,298-309,339-347
3bxm A:126-133,199-205,298-309,339-347
2zjj A:202-209,233-237,237-253,282-289
3d7f A:126-133,173-178,298-309,339-347
3d7f A:126-133,199-205,298-309,339-347
3qbh C:202-209,233-237,237-253,281-289
3qbh A:202-209,233-237,237-253,281-289
3qbh B:202-209,233-237,237-253,281-289
3ru1 A:202-209,232-237,237-253,282-289
2xfi A:263-270,294-298,298-314,343-350
2zjm A:202-209,233-237,237-253,282-289
3s9l B:198-205,251-259,338-350,370-378
3s9l B:198-205,231-236,338-350,370-378
3s9l A:198-205,231-236,338-350,370-378
3s9l A:198-205,251-258,338-350,370-378
2zjn A:202-209,233-237,237-253,282-289
3hvg A:202-209,233-237,237-253,282-289
3hvg B:202-209,233-237,237-253,282-289
3hvg C:202-209,233-237,237-253,282-289
3l5f A:263-270,294-298,298-314,343-350
3l5f B:263-270,294-298,298-314,343-350
3iww A:126-133,199-205,298-309,339-347
3iww A:126-133,173-178,298-309,339-347
3dm6 C:202-209,232-237,237-253,282-289
3dm6 A:202-209,233-237,237-253,281-289
3dm6 B:202-209,232-237,237-253,282-289
2qzk A:202-209,232-237,237-253,282-289
3s7m A:264-271,295-299,299-315,344-351
3igb A:264-271,295-299,299-315,344-351
3nsh C:208-215,239-243,243-259,288-295
3nsh A:208-215,239-243,243-259,288-295
2wwq 5:59-65,74-79,148-159,159-165
2bjf A:28-36,35-43,104-113,314-318
3rtn A:202-209,232-237,237-253,282-289
2vj7 A:263-270,294-298,298-314,343-350
3inf A:264-271,295-299,299-315,344-351
3d7d A:126-133,173-178,298-309,339-347
3d7d A:126-133,199-205,298-309,339-347
2q11 B:202-209,232-237,237-253,282-289
2z71 C:27-35,34-40,101-113,314-318
3r1g B:263-270,294-298,298-314,343-350
3h0b C:202-209,233-237,237-253,282-289
3h0b B:202-209,233-237,237-253,282-289
3h0b A:202-209,233-237,237-253,282-289
2xef A:126-133,173-178,298-309,339-347
2xef A:126-133,199-205,298-309,339-347
3l5b B:263-270,294-298,298-314,343-350
3l5b A:263-270,294-298,298-314,343-350
2vij A:263-270,294-298,298-314,343-350
3sjx A:126-133,173-178,298-309,339-347
3sjx A:126-133,199-205,298-309,339-347
3l5e B:263-270,294-298,298-314,343-350
3l5e A:263-270,294-298,298-314,343-350
3tpl A:202-209,233-237,237-253,282-289
3tpl B:202-209,232-237,237-253,282-289
3tpl C:202-209,233-237,237-253,282-289
3k5d C:202-209,233-237,237-253,281-289
3k5d B:202-209,233-237,237-253,281-289
3k5d A:202-209,233-237,237-253,281-289
3s9n B:198-205,231-236,338-350,370-378
3s9n A:198-205,251-259,338-350,370-378
3s9n B:198-205,251-258,338-350,370-378
3s9n A:198-205,231-236,338-350,370-378
3rth A:202-209,232-237,237-253,282-289
3sje A:126-133,173-178,298-309,339-347
3sje A:126-133,199-205,298-309,339-347
3tpr A:202-209,233-237,237-253,281-289
3tpj A:202-209,232-237,237-253,282-289
2vnm A:263-270,294-298,298-314,343-350
3rvi A:202-209,232-237,237-253,282-289
3kas A:198-206,252-259,338-349,370-378
3exo A:202-209,232-237,237-253,282-289
2iwm B:30-38,37-43,104-116,317-321
2iwm C:30-38,37-43,104-116,317-321
2iwm D:30-38,37-43,104-116,317-321
2iwm A:30-38,37-43,104-116,317-321
3dv1 C:202-209,232-237,237-253,281-289
3dv1 B:202-209,232-237,237-253,282-289
3dv1 A:202-209,233-237,237-253,281-289
3u6a C:202-209,233-237,237-253,282-289
3u6a A:202-209,232-237,237-253,282-289
3u6a B:202-209,232-237,237-253,282-289
3ine A:264-271,295-299,299-315,344-351
3j01 5:60-65,74-79,148-159,159-164
3s9m B:198-205,253-259,338-350,372-378
3s9m A:198-205,251-258,338-350,371-378
3s9m A:198-205,231-236,338-350,371-378
3s9m B:198-205,231-236,338-350,372-378
2p8h A:202-209,233-237,237-253,282-289
3lx2 C:46-55,194-201,201-213,237-246
2ph6 A:202-209,233-237,237-253,282-289
2xei A:126-133,173-178,298-309,339-347
2xei A:126-133,199-205,298-309,339-347
3sjf A:126-133,173-178,298-309,339-347
3sjf A:126-133,199-205,298-309,339-347
3i2m X:55-63,241-248,248-261,290-299
3kn0 B:263-270,294-298,298-314,343-350
3kn0 A:263-270,294-298,298-314,343-350
3l38 A:264-271,295-299,299-315,344-351
3dv5 A:202-209,233-237,237-253,281-289
3dv5 C:202-209,233-237,237-253,282-289
3dv5 B:202-209,233-237,237-253,282-289
3l5c B:263-270,294-298,298-314,343-350
3l5c A:263-270,294-298,298-314,343-350
2ga8 A:133-138,155-161,191-208,235-240
3mji B:30-38,37-43,104-116,317-321
3mji D:30-38,37-43,104-116,317-321
3mji C:30-38,37-43,104-116,317-321
3mji A:30-38,37-43,104-116,317-321
3ohh A:202-209,233-237,237-253,282-289
3d7h A:126-133,173-178,298-309,339-347
3d7h A:126-133,199-205,298-309,339-347
2b8l A:202-209,232-237,237-253,282-289
2xeg A:126-133,173-178,298-309,339-347
2xeg A:126-133,199-205,298-309,339-347