1.   c.1.6         PLP-binding barrel  circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand !   
                   TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
                   1f3t  d1f3td2  D:39-44,62-68,73-84,385-394
                   1szr  d1szrd2  D:39-44,62-68,73-84,385-394
                   7odc  d7odca2  A:39-44,62-68,73-84,385-394
                   1f3t  d1f3tb2  B:39-44,62-68,73-84,385-394
                   1d7k  d1d7ka2  A:39-44,62-68,73-84,385-394
                   2tod  d2todd2  D:39-44,62-68,73-84,385-394
                   1d7k  d1d7kb2  B:39-44,62-68,73-84,385-394

2.   c.119.1       DAK1/DegV-like  domain folds and architecture show some similarity to the tubulin-like GTPases; the nucleotide-binding sites of the Dihydroxyacetone kinase and tubulin families are different !   
                   DAK1/DegV-like 2 different domains; d1: [core: 3 layers, a/b/a; parallel sheet of 5 strands, order: 2134]; D2: [2 layers, a/b; mixed sheet of 6 strands, order 321645; strands 2 and 6 are antiparallel to the rest]
                   1vpv  d1vpva_  A:61-65,157-165,166-174,265-273

3.   c.94.1        Periplasmic binding protein-like II  Similar in architecture to the superfamily I but partly differs in topology !   
                   Periplasmic binding protein-like II consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication ! mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
                   2onk  d2onkj1  J:85-91,115-120,153-171,236-244
                   2onk  d2onke1  E:85-91,115-120,153-171,236-244
                   2onr  d2onra1  A:85-91,115-120,153-171,236-244
                   2ons  d2onsa1  A:85-91,115-120,153-171,236-244

List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 110 (enumeration index: query70) of S4

3lup  A:59-63,155-162,163-171,262-270
3cij  B:85-91,115-120,153-171,236-244
3cij  A:85-91,115-120,153-171,236-244
3dnx  A:30-34,49-57,68-76,118-143
2on3  B:39-44,62-68,73-84,385-394
2on3  A:39-44,62-68,73-84,385-394
3co8  B:8-14,32-39,46-58,353-362
3cg3  A:85-91,115-120,155-173,231-239
2gbw  E:12-17,398-402,407-423,432-441
2ckf  E:12-17,398-403,407-424,432-441
2jm1  A:169-173,192-197,197-208,273-295
2oo0  B:39-44,62-68,73-84,385-394
2oo0  A:39-44,62-68,73-84,385-394
2g7z  A:60-65,155-163,163-171,260-268
2g7z  B:60-65,155-163,163-171,260-268
2g85  A:2-8,219-229,243-256,345-371
3fch  A:55-64,189-198,199-215,235-254
3fch  B:55-65,188-199,200-215,235-256
1ztb  A:2-8,219-229,243-256,345-371
3fys  A:59-64,155-162,163-171,262-270
3qla  D:169-173,192-196,197-208,269-287
3f56  A:54-65,189-199,200-214,235-256
3f56  D:55-65,188-199,200-214,235-256
3f56  B:55-64,189-199,200-214,235-256
3f56  F:54-65,188-199,200-214,235-256
3f56  C:54-64,188-199,200-214,235-256
3aqp  B:112-117,177-184,185-200,234-251
3aqp  A:112-117,177-184,185-200,234-251
3cfx  B:93-99,123-128,161-179,245-253
3cfx  A:93-99,123-128,161-179,245-253
3egl  C:36-41,134-141,142-150,241-249
3jr7  A:78-83,175-181,182-190,282-290
3jr7  B:78-83,175-181,182-190,282-290