2. d.58.62 Ribosomal protein L10-like consists of globular N-terminal domain, structurally similar to NDK, and the L7/L12-binding C-terminal alpha-helical tail Ferredoxin-like alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2 1zav d1zava1 A:21-28,58-70,71-79,82-88 1zaw d1zawa1 A:21-28,58-70,73-81,82-88 3. d.45.1 ClpS-like ClpS-like beta-alpha(2)-beta-alpha-beta; 2 layers, alpha/beta 1rqs d1rqsa_ A:53-62,64-77,79-90,114-120 1rqu d1rqub2 B:53-62,64-77,79-90,114-120 1rqu d1rqua2 A:53-62,64-77,79-90,114-120 2gya d2gya52 5:54-62,64-77,79-90,114-120 2gyc d2gyc52 5:54-62,64-77,79-90,114-119 1dd3 d1dd3b2 B:58-67,69-82,84-95,122-128 1rqv d1rqvb2 B:52-62,64-77,79-90,114-120 1dd3 d1dd3a2 A:58-67,69-82,84-95,122-128 1dd4 d1dd4a2 A:58-67,69-82,84-95,122-128 1rqv d1rqva2 A:52-62,64-77,79-90,114-120 1yl3 d1yl3i2 I:58-67,69-82,84-95,122-128 1yl3 d1yl3j2 J:58-67,69-82,84-95,122-128 1dd4 d1dd4b2 B:60-67,69-82,84-95,122-128 2zjq d2zjq51 5:56-65,67-80,82-93,116-122 2bcw d2bcwb1 B:54-61,64-77,79-90,115-120 1ctf d1ctfa_ A:54-61,64-77,79-90,115-120 1mbv d1mbvb_ B:27-34,39-52,54-69,99-106 2gya d2gya32 3:55-59,64-77,79-90,116-120 1mg9 d1mg9a_ A:27-34,39-52,54-69,100-106 1r6o d1r6oc1 C:27-34,39-52,54-69,100-106 1mbx d1mbxc_ C:27-34,39-52,54-69,100-106 1mbu d1mbuc_ C:27-34,39-52,54-69,100-106 1r6q d1r6qc1 C:27-34,39-52,54-69,100-106 1lzw d1lzwa_ A:12-19,24-37,39-54,85-91 1mbu d1mbud_ D:27-34,39-52,54-69,100-106 1mbx d1mbxd_ D:27-34,39-52,54-69,100-106 1r6q d1r6qd1 D:27-34,39-52,54-69,100-106 1r6o d1r6od1 D:27-34,39-52,54-69,100-106 4. b.28.1 Baculovirus p35 protein has a few helices inserted in loops ! Baculovirus p35 protein sandwich; 14 strands in 2 sheets; greek-key 1i3s d1i3sa_ A:41-50,114-123,126-138,148-157 1i3s d1i3sc_ C:41-50,114-123,126-138,148-157 1i3s d1i3sb_ B:41-50,114-123,126-138,148-157 1i3p d1i3pa_ A:41-50,114-123,126-137,148-157 1p35 d1p35a_ A:41-50,114-123,126-138,148-157 1p35 d1p35c_ C:41-50,114-123,126-138,148-157 1p35 d1p35b_ B:41-50,114-123,126-138,148-157 10. d.91.1 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 alpha-beta-alpha(2)-beta(3)-alpha; 3 layers a/b/a; antiparallel beta-sheet: 4123 1dt9 d1dt9a3 A:33-41,44-63,64-86,122-128 13. e.44.1 2-methylcitrate dehydratase PrpD 2-methylcitrate dehydratase PrpD consists of an all-alpha and alpha+beta domains 1szq d1szqb_ B:316-324,347-359,373-384,403-412 1szq d1szqa_ A:316-325,347-359,373-384,403-412 14. d.276.1 Hypothetical protein yfbM Hypothetical protein yfbM beta-alpha(2)-beta-alpha(2)-beta(2)-alpha(n)-beta; 3 layers: a/b/a; antiparallel beta-sheet, order: 21543 1ryl d1ryla_ A:4-11,89-103,129-158,159-166 1ryl d1rylb_ B:4-11,89-103,129-158,159-166 15. d.220.1 Metal cation-transporting ATPase, ATP-binding domain N Metal cation-transporting ATPase, ATP-binding domain N unusual fold; core: beta-alpha(2)-beta(3)-alpha(2)-beta(2); 6-stranded antiparallel beta-sheet, order: 165432 2a29 d2a29a1 A:316-325,329-345,346-361,437-448 2b8e d2b8ec2 C:434-442,445-460,462-476,538-548 2b8e d2b8ea2 A:434-442,445-460,462-476,538-548 2a00 d2a00a1 A:316-325,329-345,346-361,437-448 2b8e d2b8eb2 B:434-442,445-460,462-476,538-548 1q3i d1q3ia_ A:378-387,408-424,443-458,576-587 3b9r d3b9ra3 A:361-374,407-422,439-453,591-601 1su4 d1su4a3 A:361-374,407-422,439-453,591-601 1iwo d1iwob3 B:361-374,407-422,439-453,591-601 1iwo d1iwoa3 A:361-374,407-422,439-453,591-601 1svj d1svja_ A:317-325,329-344,346-362,437-447 3b9b d3b9ba3 A:361-374,407-421,439-453,591-601 1wpg d1wpgc3 C:361-374,407-421,439-453,591-601 1wpg d1wpgb3 B:361-374,407-421,439-453,591-601 2zbd d2zbda3 A:361-374,407-421,439-453,591-601 1t5t d1t5ta3 A:361-374,407-421,439-453,591-601 2zbf d2zbfa3 A:361-374,407-421,439-453,591-601 2zbg d2zbga3 A:361-374,407-421,439-453,591-601 1t5s d1t5sa3 A:361-374,407-421,439-453,591-601 1wpg d1wpgd3 D:361-374,407-421,439-453,591-601 1wpg d1wpga3 A:361-374,407-421,439-453,591-601 1vfp d1vfpa3 A:361-374,407-421,439-453,591-601 1vfp d1vfpb3 B:361-374,407-421,439-453,591-601 1xp5 d1xp5a3 A:361-374,407-421,439-453,591-601 3b9r d3b9rb3 B:361-374,407-421,439-453,591-601 1u7q d1u7qa_ A:317-325,329-344,346-361,437-447 2zbe d2zbeb3 B:361-374,407-421,439-453,591-601 2zbe d2zbea3 A:361-374,407-421,439-453,591-601 1kju d1kjua3 A:363-374,407-422,439-453,591-600 1mo7 d1mo7a_ A:388-393,414-429,450-464,587-591 19. d.261.1 Hypothetical protein PH1602 Hypothetical protein PH1602 complex alpha+beta fold; contains a region of similarity to the ferredoxin-like fold 1uc2 d1uc2b_ B:97-106,162-169,275-312,320-328 1uc2 d1uc2a_ A:97-106,162-169,275-312,319-328 23. d.213.1 VSV matrix protein VSV matrix protein beta-alpha(2)-beta(4)-alpha-beta(2); two layers: alpha/beta; bifurcated coiled beta-sheet: order of the first 5 strands: 23154 1lg7 d1lg7a_ A:59-75,80-93,101-116,166-180 25. c.111.1 Activating enzymes of the ubiquitin-like proteins transfer adenylyl group to the C-terminal carboxyl group of the ubiquitin and MoaD/ThiS-related proteins ! the ATP nucleotide-binding site is similar to that of the NAD-binding Rossmann-folds ! Activating enzymes of the ubiquitin-like proteins 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 32145678; strands 6 and 8 are antiparallel to the rest 3dbl d3dble1 E:167-172,282-291,302-320,390-395 1tt5 d1tt5c_ C:167-172,282-291,302-320,390-395 2nvu d2nvua1 A:167-172,282-291,302-320,390-395 1yov d1yova1 A:167-172,282-291,302-320,390-395 1tt5 d1tt5a_ A:167-172,282-291,302-320,390-395 3dbh d3dbha1 A:167-172,282-291,302-320,390-395 3dbh d3dbhe1 E:167-172,282-291,302-320,390-395 3dbr d3dbra1 A:167-172,282-291,302-320,390-395 3dbr d3dbre1 E:167-172,282-291,302-320,390-395 1r4n d1r4na_ A:167-172,282-291,302-320,390-395 1r4n d1r4ng_ G:167-172,282-291,302-320,390-395 3dbh d3dbhg1 G:167-172,282-291,302-320,390-395 1r4n d1r4ne_ E:167-172,282-291,302-320,390-395 1r4n d1r4nc_ C:167-172,282-291,302-320,390-395 1r4m d1r4ma_ A:167-172,282-291,302-320,390-395 1r4m d1r4mg_ G:167-172,282-291,302-320,390-395 1r4m d1r4me_ E:167-172,282-291,302-320,390-395 1r4m d1r4mc_ C:167-172,282-291,302-320,390-395 3dbl d3dblg1 G:167-172,282-291,302-320,390-395 1yov d1yovc1 C:167-172,282-291,302-320,390-395 3dbl d3dblc1 C:167-172,282-291,302-320,390-395 3dbr d3dbrc1 C:167-172,282-291,302-320,390-395 3dbr d3dbrg1 G:167-172,282-291,302-320,390-395 3dbh d3dbhc1 C:167-172,282-291,302-320,390-395 3dbl d3dbla1 A:167-172,282-291,302-320,390-395