1. c.3.1 FAD/NAD(P)-binding domain
FAD/NAD(P)-binding domain core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander
1d4d d1d4da2 A:110-121,127-132,275-283,287-296
1d4e d1d4ea2 A:110-121,127-132,274-283,287-296
1d4c d1d4cc2 C:110-121,127-132,274-284,286-296
1d4c d1d4cb2 B:110-121,127-132,274-284,286-296
1d4c d1d4ca2 A:110-121,127-132,274-284,286-296
1d4c d1d4cd2 D:110-121,127-132,274-284,286-296
1d4c d1d4cd2 D:110-121,269-274,274-284,286-296
2. b.1.1 Immunoglobulin
Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
1f6a d1f6ab2 B:344-352,459-468,474-481,521-528
1igy d1igyd4 D:259-266,385-394,400-410,453-460
3. d.136.1 Phospholipase D/nuclease
Phospholipase D/nuclease beta-alpha-beta-alpha-beta-alpha-beta(4)-alpha; mixed sheet: order 1765234
1v0t d1v0ta1 A:8-23,202-209,265-274,471-480
1v0u d1v0ua1 A:8-23,202-209,265-274,471-480
1v0r d1v0ra1 A:8-23,202-209,265-274,471-480
1v0w d1v0wa1 A:8-23,200-209,265-274,471-480
1v0s d1v0sa1 A:8-23,200-209,265-274,471-480
1v0y d1v0ya1 A:8-23,202-209,265-275,470-480
1v0v d1v0va1 A:8-23,202-209,265-275,470-480
4. b.71.1 Glycosyl hydrolase domain this domain is C-terminal to the catalytic beta/alpha barrel domain !
Glycosyl hydrolase domain folded sheet; greek-key
1ogs d1ogsa1 A:415-428,435-440,444-452,454-464
2nt0 d2nt0a1 A:415-428,435-440,444-452,454-464
2nt0 d2nt0c1 C:415-428,435-440,444-452,454-464
2nsx d2nsxa1 A:415-428,435-440,444-452,454-464
2j25 d2j25a1 A:415-428,435-440,444-452,454-464
2f61 d2f61b1 B:415-428,435-440,444-452,454-462
2j25 d2j25b1 B:415-428,435-440,444-452,454-464
1y7v d1y7va1 A:415-428,435-440,444-452,454-464
2f61 d2f61a1 A:415-428,435-440,444-452,454-464
2nt1 d2nt1a1 A:415-428,435-440,444-452,454-464
2nt0 d2nt0b1 B:415-428,435-440,444-452,454-464
2v3e d2v3ea1 A:415-428,435-440,444-452,454-464
1ogs d1ogsb1 B:415-428,435-440,444-452,454-464
2v3d d2v3da1 A:415-428,435-440,444-452,454-464
2nsx d2nsxb1 B:415-428,435-440,444-452,454-464
2vt0 d2vt0a1 A:415-428,436-440,443-452,454-463
1qw8 d1qw8b1 B:370-384,390-394,407-417,418-429
2nsx d2nsxc1 C:415-428,436-440,444-452,454-464
2nt1 d2nt1c1 C:415-428,436-440,444-452,454-464
2v3e d2v3eb1 B:415-428,436-440,444-452,454-464
1y7v d1y7vb1 B:415-428,436-440,444-452,454-464
2nt1 d2nt1b1 B:415-428,436-440,444-452,454-464
2nt1 d2nt1d1 D:415-428,436-440,444-452,454-464
5. d.39.1 DLC
DLC core: beta-alpha(2)-beta-X-beta(2); 2 layers: alpha/beta; antiparallel beta-sheet: order 1342
2pg1 d2pg1b1 B:14-32,60-69,72-79,80-88
1cmi d1cmia_ A:14-32,60-70,72-79,80-88
2pg1 d2pg1d1 D:14-33,60-70,72-79,80-88
2pg1 d2pg1a1 A:14-33,60-70,72-79,80-88
1f95 d1f95b_ B:14-33,60-70,72-79,80-88
2pg1 d2pg1c1 C:14-33,60-69,72-79,80-88
1cmi d1cmib_ B:14-33,60-70,72-79,80-88
1f95 d1f95a_ A:14-33,60-67,72-79,80-88
2p2t d2p2ta1 A:14-33,62-69,72-79,80-88
3e2b d3e2ba1 A:14-33,62-70,72-79,80-88
6. b.18.1 Galactose-binding domain-like
Galactose-binding domain-like sandwich; 9 strands in 2 sheets; jelly-roll
1jz5 d1jz5d3 D:70-77,137-145,148-155,181-190
1jz6 d1jz6d3 D:70-77,137-145,148-155,181-190
1jz6 d1jz6b3 B:70-77,137-145,148-155,180-190
1jz5 d1jz5b3 B:70-77,137-145,148-155,180-190
1bgm d1bgmm3 M:70-77,137-145,149-155,180-191
1jz4 d1jz4d3 D:70-77,137-145,148-155,181-191
1bgm d1bgmj3 J:70-77,137-145,148-155,180-190
1bgm d1bgmo3 O:70-77,137-145,148-155,180-190
1jz7 d1jz7d3 D:70-77,137-145,148-155,181-191
1px4 d1px4d3 D:70-77,137-145,148-155,181-191
1dp0 d1dp0d3 D:70-77,137-145,148-155,181-191
1hn1 d1hn1b3 B:70-77,137-145,148-155,180-190
1jz3 d1jz3d3 D:70-77,137-145,148-155,181-191
1jz8 d1jz8d3 D:70-77,137-145,148-155,181-191
1bgl d1bglb3 B:70-77,137-145,148-155,180-190
1jyw d1jywd3 D:70-77,137-145,148-155,181-191
1bgm d1bgmi3 I:70-77,137-145,148-155,180-190
1jyn d1jynd3 D:70-77,137-145,148-155,181-191
1jyv d1jyvd3 D:70-77,137-145,148-155,181-191
1bgl d1bgla3 A:70-77,137-145,148-155,180-190
1px3 d1px3d3 D:70-77,137-145,148-155,181-191
1bgl d1bglc3 C:70-77,137-145,148-155,180-190
1bgl d1bgld3 D:70-77,137-145,148-155,180-190
1f4h d1f4hb3 B:70-77,137-145,148-155,180-190
1bgm d1bgmn3 N:70-77,137-145,148-155,180-190
1jyx d1jyxd3 D:70-77,137-145,148-155,181-191
1jyn d1jync3 C:70-77,137-145,148-155,180-191
1bgm d1bgmp3 P:70-77,137-145,148-155,180-190
1jyv d1jyvc3 C:70-77,137-145,148-155,180-191
1jz2 d1jz2d3 D:70-77,137-145,148-155,180-191
1bgl d1bgle3 E:70-77,137-145,148-155,180-190
1px4 d1px4b3 B:70-77,137-145,148-155,180-191
1dp0 d1dp0c3 C:70-77,137-145,148-155,180-191
1jz4 d1jz4b3 B:70-77,137-145,148-155,180-191
1jz8 d1jz8c3 C:70-77,137-145,148-155,180-191
1px4 d1px4a3 A:70-77,137-145,148-155,180-191
1px3 d1px3b3 B:70-77,137-145,148-155,180-191
1jz4 d1jz4c3 C:70-77,137-145,148-155,180-191
1jyn d1jynb3 B:70-77,137-145,148-155,180-191
1jz2 d1jz2a3 A:70-77,137-145,148-155,180-191
1jyw d1jywc3 C:70-77,137-145,148-155,180-191
1bgl d1bglg3 G:70-77,137-145,148-155,180-191
1jz3 d1jz3a3 A:70-77,137-145,148-155,180-191
1jz4 d1jz4a3 A:70-77,137-145,148-155,180-191
1px3 d1px3c3 C:70-77,137-145,148-155,180-191
1jyn d1jyna3 A:70-77,137-145,148-155,180-191
1px4 d1px4c3 C:70-77,137-145,148-155,180-191
1px3 d1px3a3 A:70-77,137-145,148-155,180-191
1jyv d1jyva3 A:70-77,137-145,148-155,180-191
1f4h d1f4ha3 A:70-77,137-145,148-155,180-190
1jyx d1jyxc3 C:70-77,137-145,148-155,180-191
1jz3 d1jz3b3 B:70-77,137-145,148-155,180-191
1jz8 d1jz8b3 B:70-77,137-145,148-155,180-191
1jyx d1jyxa3 A:70-77,137-145,148-155,180-191
1jz3 d1jz3c3 C:70-77,137-145,148-155,180-191
1jz7 d1jz7a3 A:70-77,137-145,148-155,180-191
1jz7 d1jz7b3 B:70-77,137-145,148-155,180-191
1dp0 d1dp0a3 A:70-77,137-145,148-155,180-191
1dp0 d1dp0b3 B:70-77,137-145,148-155,180-191
1jz5 d1jz5c3 C:70-77,137-145,148-155,180-191
1jyw d1jywb3 B:70-77,137-145,148-155,180-191
1jz8 d1jz8a3 A:70-77,137-145,148-155,180-191
1jz2 d1jz2b3 B:70-77,137-145,148-155,180-191
1jz6 d1jz6c3 C:70-77,137-145,148-155,180-191
1jyx d1jyxb3 B:70-77,137-145,148-155,180-191
1jyw d1jywa3 A:70-77,137-145,148-155,180-191
1bgm d1bgmk3 K:70-77,137-145,148-155,180-190
1hn1 d1hn1c3 C:70-77,137-145,148-155,180-191
1hn1 d1hn1a3 A:70-77,137-145,148-155,180-191
1jyv d1jyvb3 B:70-77,137-145,148-155,180-191
1jz2 d1jz2c3 C:70-77,137-145,148-155,180-191
1jz5 d1jz5a3 A:70-77,137-145,148-155,180-191
1jz6 d1jz6a3 A:70-77,137-145,148-155,180-191
1bgm d1bgml3 L:70-77,137-145,148-155,180-191
1f4h d1f4hc3 C:70-77,137-145,148-155,180-191
1f4h d1f4hd3 D:70-77,137-145,148-155,180-191
1f4a d1f4ac3 C:70-77,137-145,148-155,180-191
1f4a d1f4aa3 A:70-77,137-145,148-155,180-191
1f4a d1f4ab3 B:70-77,137-145,148-155,180-191
1f4a d1f4ad3 D:70-77,137-145,148-155,180-191
1bgl d1bglf3 F:70-77,137-145,148-155,180-191
1jyy d1jyya3 A:70-77,137-145,148-155,180-191
1jyy d1jyye3 E:70-77,137-145,148-155,180-191
1jyz d1jyzo3 O:70-77,137-145,148-155,180-191
1jyy d1jyyg3 G:70-77,137-145,148-155,180-191
1jyz d1jyzi3 I:70-77,137-145,148-155,180-191
1jyy d1jyyb3 B:70-77,137-145,148-155,180-191
1jyz d1jyzl3 L:70-77,137-145,148-155,180-191
1jyy d1jyyf3 F:70-77,137-145,148-155,180-191
1jyz d1jyzn3 N:70-77,137-145,148-155,180-191
1jyy d1jyyc3 C:70-77,137-145,148-155,180-191
1jyz d1jyzj3 J:70-77,137-145,148-155,180-191
1jyz d1jyzk3 K:70-77,137-145,148-155,180-191
1jyz d1jyzm3 M:70-77,137-145,148-155,180-191
1jyz d1jyzp3 P:70-77,137-145,148-155,180-191
1jyy d1jyyd3 D:70-77,137-145,148-155,180-191
1jyy d1jyyh3 H:70-77,137-145,148-155,180-191
1f49 d1f49c3 C:70-77,137-145,148-155,180-191
1f49 d1f49d3 D:70-77,137-145,148-155,180-191
1gho d1ghoo3 O:70-77,137-145,148-155,180-191
1f49 d1f49e3 E:70-77,137-145,148-155,180-191
1f49 d1f49g3 G:70-77,137-145,148-155,180-191
1f49 d1f49a3 A:70-77,137-145,148-155,180-191
1gho d1ghoj3 J:70-77,137-145,148-155,180-191
1gho d1ghol3 L:70-77,137-145,148-155,180-191
1gho d1ghom3 M:70-77,137-145,148-155,180-191
1f49 d1f49f3 F:70-77,137-145,148-155,180-191
1gho d1ghop3 P:70-77,137-145,148-155,180-191
1gho d1ghoi3 I:70-77,137-145,148-155,180-191
1f49 d1f49h3 H:70-77,137-145,148-155,180-191
1f49 d1f49b3 B:70-77,137-145,148-155,180-191
1gho d1ghok3 K:70-77,137-145,148-155,180-191
1gho d1ghon3 N:70-77,137-145,148-155,180-191
1hn1 d1hn1d3 D:70-77,137-145,148-155,180-191
1jz0 d1jz0a3 A:70-77,137-145,148-155,180-191
1jz1 d1jz1k3 K:70-77,137-145,148-155,180-191
1jz1 d1jz1n3 N:70-77,137-145,148-155,180-191
1jz1 d1jz1m3 M:70-77,137-145,148-155,180-191
1jz0 d1jz0b3 B:70-77,137-145,148-155,180-191
1jz0 d1jz0h3 H:70-77,137-145,148-155,180-191
1jz0 d1jz0e3 E:70-77,137-145,148-155,180-191
1jz0 d1jz0d3 D:70-77,137-145,148-155,180-191
1jz1 d1jz1o3 O:70-77,137-145,148-155,180-191
1jz1 d1jz1j3 J:70-77,137-145,148-155,180-191
1jz1 d1jz1i3 I:70-77,137-145,148-155,180-191
1jz0 d1jz0g3 G:70-77,137-145,148-155,180-191
1jz1 d1jz1l3 L:70-77,137-145,148-155,180-191
1jz0 d1jz0f3 F:70-77,137-145,148-155,180-191
1jz1 d1jz1p3 P:70-77,137-145,148-155,180-191
1jz0 d1jz0c3 C:70-77,137-145,148-155,180-191
1bgl d1bglh3 H:70-77,137-145,148-155,180-191
7. d.290.1 AF0104/ALDC/Ptd012-like characteristic metal ion (zinc)-binding motif in the putative active site !
AF0104/ALDC/Ptd012-like duplication: consists of two similar beta-alpha-beta(4) motifs
1xcr d1xcra1 A:12-29,51-55,168-177,288-297
8. b.2.6 Cytochrome f, large domain
Common fold of diphtheria toxin/transcription factors/cytochrome f sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
1vf5 d1vf5p1 P:1-10,81-85,102-106,112-117
1vf5 d1vf5c1 C:1-10,81-85,102-106,112-117
1e2z d1e2zb1 B:1-10,41-51,70-77,144-155
1cfm d1cfmb1 B:1-10,41-51,69-77,144-155
1cfm d1cfma1 A:1-10,41-51,69-77,144-155
1ewh d1ewhb1 B:1-10,41-51,69-77,144-155
1ewh d1ewhc1 C:1-10,41-51,69-77,144-155
1cfm d1cfmc1 C:1-10,41-51,69-77,144-155
1q90 d1q90a1 A:1-10,41-51,69-77,144-155
1e2w d1e2wa1 A:1-10,41-51,69-77,144-155
1e2z d1e2za1 A:1-10,41-51,69-77,144-155
1e2w d1e2wb1 B:1-10,41-51,69-77,144-155
1ewh d1ewha1 A:1-10,41-51,69-77,143-155
1e2v d1e2vc1 C:601-610,641-651,669-677,744-755
1e2z d1e2zc1 C:1-10,41-51,69-77,144-155
1e2v d1e2vb1 B:301-310,341-351,369-377,443-455
1tu2 d1tu2b1 B:1-10,42-52,70-78,145-156
1e2v d1e2va1 A:1-10,42-51,69-77,144-155
9. b.34.2 SH3-domain
SH3-like barrel barrel, partly opened; n*=4, S*=8; meander ! the last strand is interrupted by a turn of 3-10 helix
1ug1 d1ug1a_ A:2-15,33-39,39-47,56-62
10. b.116.1 Viral chemokine binding protein m3
Viral chemokine binding protein m3 consists of two different beta-sandwich domains of partial topological similarity to immunoglobulin-like folds
1mkf d1mkfb_ B:43-59,125-133,143-149,150-160
2nz1 d2nz1x1 X:43-59,125-133,143-149,150-160
2nz1 d2nz1b1 B:43-59,125-133,143-149,150-160
2nz1 d2nz1a1 A:43-59,125-133,143-149,150-160
1mkf d1mkfa_ A:43-59,125-133,143-149,150-160
1ml0 d1ml0a_ A:43-59,125-133,143-149,150-160
2nyz d2nyza1 A:43-59,126-133,143-149,150-160
2nyz d2nyzb1 B:43-59,126-133,143-149,150-160
11. d.126.1 Pentein
Pentein, beta/alpha-propeller duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis
2abr d2abrc1 C:47-66,289-294,361-365,367-373
2aaf d2aafd1 D:47-66,289-294,361-365,367-373
1g62 d1g62a_ A:31-43,157-163,197-201,202-207
1g61 d1g61b_ B:4033-4045,4159-4164,4200-4204,4205-4211
2abr d2abrd1 D:47-66,289-294,361-365,367-373
2a9g d2a9gc1 C:47-66,289-294,361-365,367-373
2a9g d2a9gb1 B:47-66,289-294,361-365,367-373
2a9g d2a9gd1 D:47-66,289-294,361-365,367-373
12. b.1.18 E set domains "Early" Ig-like fold families possibly related to the immunoglobulin and/or fibronectin type III superfamilies !
Immunoglobulin-like beta-sandwich sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
1ttu d1ttua1 A:199-210,575-585,589-595,636-645
3brd d3brda1 A:199-210,575-585,589-595,633-645
13. c.109.1 PEP carboxykinase N-terminal domain
PEP carboxykinase N-terminal domain contains mixed beta-sheets; topology is partly similar to that of the catalytic C-terminal domain
1ii2 d1ii2a2 A:180-200,236-242,242-248,249-254
2pxz d2pxzx2 X:207-227,263-269,269-275,276-281
1ii2 d1ii2b2 B:180-200,236-242,242-248,249-254
2py7 d2py7x2 X:207-227,263-269,269-275,276-281
1k3c d1k3ca2 A:207-227,263-269,269-275,276-281
2olr d2olra2 A:207-227,263-269,269-275,276-281
2olq d2olqa2 A:207-227,263-269,269-275,276-281
1k3d d1k3da2 A:207-227,263-269,269-275,276-281
1aq2 d1aq2a2 A:207-227,263-269,269-275,276-281
1os1 d1os1a2 A:207-227,263-269,269-275,276-281
1oen d1oena2 A:207-227,263-269,269-275,276-281
1ayl d1ayla2 A:207-227,263-269,269-275,276-281
1xkv d1xkvb2 B:191-211,247-253,253-259,260-265
2pc9 d2pc9b2 B:191-211,247-253,253-259,260-265
1j3b d1j3ba2 A:191-211,247-253,253-259,260-265
1xkv d1xkva2 A:191-211,247-253,253-259,260-265
14. b.80.7 beta-Roll superhelix turns are made of two short strands each !
Single-stranded right-handed beta-helix superhelix turns are made of parallel beta-strands and (short) turns
1o0q d1o0qa1 A:5-19,285-291,295-303,304-310
15. i.4.1 Electron transport chains
Electron transport chains
2jxm d2jxmb1 B:1-10,41-52,69-77,146-157
2pcf d2pcfb_ B:1-10,41-52,69-77,143-155
16. c.23.16 Class I glutamine amidotransferase-like conserved positions of the oxyanion hole and catalytic nucleophile; different constituent families contain different additional structures !
Flavodoxin-like 3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
1vcn d1vcna1 A:392-407,463-472,506-510,515-520
17. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1f9u d1f9ua_ A:490-510,555-562,599-612,616-628
1f9t d1f9ta_ A:490-510,555-562,599-612,615-628
1f9v d1f9va_ A:490-510,555-562,599-612,615-628
3kar d3kara_ A:490-510,555-562,599-613,614-628
1f9w d1f9wb_ B:490-510,555-562,598-613,614-629
1f9w d1f9wa_ A:490-510,555-562,598-613,614-629
3cob d3cobc1 C:988-1005,1046-1052,1089-1103,1104-1118
2kin d2kin.1 A:107-123,162-167,205-219,220-234
3kin d3kin.1 A:107-123,162-167,205-219,220-234
1sdm d1sdma_ A:988-1008,1046-1052,1089-1103,1104-1118
3cob d3coba1 A:988-1008,1046-1052,1089-1103,1104-1118
1mkj d1mkja_ A:106-123,161-166,204-218,219-233
3cnz d3cnzb1 B:988-1008,1046-1052,1089-1103,1104-1118
3cob d3cobc1 C:943-961,1046-1052,1089-1103,1104-1118
3cnz d3cnza1 A:988-1008,1046-1052,1089-1103,1104-1118
18. c.72.1 Ribokinase-like has extra strand located between strands 2 and 3 !
Ribokinase-like core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest ! potential superfamily: members of this fold have similar functions but different ATP-binding sites
1lik d1lika_ A:48-62,87-96,124-133,134-144
19. b.30.5 Galactose mutarotase-like probable carbohydrate-binding domain in enzymes acting on sugars !
Supersandwich sandwich; 18 strands in 2 sheets
1k1y d1k1yb2 B:498-505,604-611,612-627,630-648
1k1y d1k1ya2 A:498-505,604-611,613-627,630-648
1k1x d1k1xb2 B:498-505,604-611,612-628,629-648
1k1x d1k1xa2 A:498-505,604-611,613-628,629-648
1k1w d1k1wa2 A:498-505,604-611,613-628,629-648
20. b.132.1 Supernatant protein factor (SPF), C-terminal domain
Supernatant protein factor (SPF), C-terminal domain sandwich; 8 strands in 2 sheets; jelly-roll; similarity to the Nucleoplasmin-like/VP fold
1olm d1olma2 A:195-206,288-297,300-310,373-386
1olm d1olmc2 C:195-206,286-297,300-311,373-386
21. d.159.1 Metallo-dependent phosphatases different families of this superfamily are groupped in a single Pfam family,
Metallo-dependent phosphatases 4 layers: alpha/beta/beta/alpha; mixed beta sheets; contains duplication
1ute d1utea_ A:25-43,259-265,271-280,281-290
1qhw d1qhwa_ A:46-64,280-286,292-300,302-311
1qfc d1qfca_ A:25-43,259-265,271-280,281-290
22. c.1.28 Radical SAM enzymes common Fe-S cluster and SAM binding sites are embedded into complete or incomplete beta/alpha-barrel !
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1olt d1olta_ A:37-49,306-310,328-333,334-340
23. b.97.1 Cytolysin/lectin some topological similarity to osmotin !
Cytolysin/lectin sandwich, 10 strands in 2 sheets;
1iaz d1iaza_ A:15-27,114-124,157-165,168-178
1iaz d1iazb_ B:15-27,114-124,157-165,168-179
1tzq d1tzqa_ A:15-27,114-124,157-165,168-178
24. b.7.1 C2 domain (Calcium/lipid-binding domain, CaLB) two constituent families are related by circular permutation !
C2 domain-like sandwich; 8 strands in 2 sheets; greek-key
1djw d1djwa2 A:563-571,627-640,652-662,698-708
1djx d1djxa2 A:563-571,627-640,652-662,698-708
1djz d1djza2 A:563-571,627-640,652-662,698-708
1djz d1djzb2 B:563-571,627-640,652-662,698-708
1djy d1djya2 A:563-571,627-640,652-662,698-708
1djg d1djga2 A:563-571,627-640,652-662,698-708
1dji d1djia2 A:563-571,627-640,652-662,698-708
1djh d1djha2 A:563-571,627-640,652-662,698-708
1djg d1djgb2 B:563-571,627-640,652-662,698-708
1djy d1djyb2 B:563-571,627-640,652-662,698-708
2isd d2isda2 A:563-571,627-640,651-662,698-708
25. d.296.1 YktB/PF0168-like
YktB/PF0168-like alpha-beta(4)-alpha-beta(2)-alpha-beta-alpha; 2 layers, a/b; antiparallel beta-sheet, order: 1234756; half-barrel shape; topological similarity to the MotA C-terminal domain-like fold (scop_cf 69651) and the Secretion chaperone-like fold (scop_cf 69634)
1yb3 d1yb3a1 A:2-29,40-47,55-63,65-72
26. c.93.1 Periplasmic binding protein-like I Similar in architecture to the superfamily II but partly differs in topology !
Periplasmic binding protein-like I consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication ! parallel beta-sheet of 6 strands, order 213456
1jdn d1jdna_ A:135-151,356-363,368-380,381-393
1t34 d1t34a_ A:129-145,362-368,373-383,386-397
1t34 d1t34b_ B:129-145,362-368,373-383,386-397
1dp4 d1dp4c_ C:129-145,362-368,373-384,385-397
1dp4 d1dp4a_ A:129-145,362-368,373-384,385-397
27. b.82.2 Clavaminate synthase-like Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold !
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1uog d1uoga_ A:40-58,182-186,187-193,259-267
28. d.3.1 Cysteine proteinases the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet !
Cysteine proteinases consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
2ary d2arya1 A:114-128,267-271,271-285,286-296
1mdw d1mdwa_ A:104-118,257-261,261-275,276-286
1kxr d1kxrb_ B:114-128,267-271,271-285,286-296
29. b.69.4 WD40 repeat-like also contains 8-bladed propellers !
7-bladed beta-propeller consists of seven 4-stranded beta-sheet motifs; meander
1nex d1nexb2 B:346-368,402-409,724-733,734-743
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 170 (enumeration index: query77) of S4
2wmi A:723-741,876-884,886-894,895-904
2wmi B:723-741,875-884,886-894,895-904
3axh A:117-127,147-151,163-169,170-176
1ntl B:350-357,466-475,481-488,526-533
2c6z A:38-58,183-189,221-226,230-236
2rep A:432-452,495-501,537-551,555-568
3dyp B:70-77,137-145,148-155,180-191
3dyp C:70-77,137-145,148-155,180-191
3dyp A:70-77,137-145,148-155,180-191
3dyp D:70-77,137-145,148-155,181-191
3czj C:70-77,137-145,148-155,180-191
3czj B:70-77,137-145,148-155,180-191
3czj A:70-77,137-145,148-155,180-191
3czj D:70-77,137-145,148-155,181-190
3aq3 A:16-38,79-83,129-135,199-204
3aq3 C:16-33,79-83,129-135,199-204
3aq3 B:16-39,79-83,129-135,198-204
3h4s A:988-1005,1046-1052,1089-1103,1104-1118
1yvy B:1200-1220,1256-1263,1263-1269,1270-1275
1yvy A:200-220,256-263,263-269,270-275
1war A:23-41,257-263,269-277,279-288
3cl5 A:77-84,184-195,198-208,272-281
3k4i B:13-23,162-166,168-175,176-183
2ci7 A:38-58,183-189,221-226,230-237
3lvt A:96-115,818-822,825-835,838-847
3i4a A:39-59,184-190,222-227,231-238
3i4a B:39-59,184-190,222-227,231-238
2zus B:409-431,696-701,703-710,713-720
3mce C:77-84,101-108,109-114,118-124
2zuu D:409-431,696-701,703-711,712-720
3e1f 1:70-77,137-145,148-155,180-191
3e1f 4:70-77,137-145,148-155,180-191
3e1f 2:70-77,137-145,148-155,180-191
3e1f 3:70-77,137-145,148-155,180-191
2wkl B:415-428,435-440,444-452,454-464
2wkl A:415-428,436-440,444-452,454-464
3p8p B:39-59,184-190,222-227,231-238
3p8p A:39-59,184-190,222-227,231-238
3gxf A:415-428,436-440,444-452,454-464
3gxf C:415-428,435-440,444-452,454-464
3gxf D:415-428,435-440,444-452,454-464
3glw A:14-33,62-70,72-79,80-89
3lif B:46-89,162-166,166-176,178-189
3a3k B:129-145,362-368,373-384,385-397
3a3k A:129-145,362-368,373-384,385-397
3muy 2:70-77,137-145,148-155,180-191
3muy 4:70-77,137-145,148-155,181-191
3muy 3:70-77,137-145,148-155,180-191
3muy 1:70-77,137-145,148-155,180-191
2ybk B:113-125,194-202,202-213,273-282
3gxi B:415-428,435-440,444-452,454-464
3gxi C:415-428,436-440,444-452,454-464
3gxi A:415-428,436-440,444-452,454-464
3gxi D:415-428,435-440,444-452,454-464
3m3p A:121-129,142-146,150-157,162-167
3opt A:161-176,241-249,249-259,321-329
2w7t A:397-412,491-500,533-537,542-547
1z47 A:239-248,265-270,278-285,350-355
1z47 B:239-248,265-270,278-285,350-355
3aq2 A:16-36,79-83,129-135,195-200
3aq2 B:16-35,79-83,129-135,195-200
3mv1 3:70-77,137-145,148-155,180-191
3mv1 2:70-77,137-145,148-155,180-191
3mv1 1:70-77,137-145,148-155,180-191
3mv1 4:70-77,137-145,148-155,181-191
3ke0 A:415-428,435-440,444-452,454-464
4a1d J:31-43,157-161,197-201,202-207
3di4 A:33-44,55-65,64-73,254-263
3di4 B:33-44,55-65,64-73,254-263
3dvt E:14-33,60-66,72-79,80-87
3dvt D:14-33,60-66,72-79,80-87
3dvt C:14-33,61-66,72-79,80-87
3dvt F:14-33,60-66,72-79,80-87
2ci4 A:38-58,183-189,221-226,230-237
3pus B:86-96,255-263,263-273,318-327
3pus A:86-96,255-263,263-273,318-327
2wmh A:314-332,464-472,474-482,483-492
3gcw A:430-438,630-640,643-651,652-659
2ci6 A:38-58,183-189,221-226,230-237
2jaj B:38-58,183-189,221-226,230-237
2jaj A:38-58,183-189,221-226,230-237
2x7n B:31-43,157-163,197-201,202-207
4a18 J:31-43,157-161,197-201,202-207
2wbe C:120-137,177-181,219-231,238-251
3h9z B:344-352,459-471,474-481,520-528
2wnw A:364-377,386-390,392-401,403-413
2wnw B:364-377,386-390,392-401,403-413
2ci1 A:38-58,183-189,221-226,230-236
3brl A:14-33,62-70,72-79,80-88
3kv4 A:84-94,253-261,261-271,316-325
3pu8 A:86-96,255-263,263-273,318-327
3pu8 B:86-96,255-263,263-273,318-327
2oq7 B:113-125,194-202,202-213,273-282
3iaq B:70-77,137-145,148-155,180-191
3iaq A:70-77,137-145,148-155,180-191
3iaq D:70-77,137-145,148-155,181-191
3iaq C:70-77,137-145,148-155,180-191
3a4a A:117-127,147-151,163-169,170-176
3cl4 A:77-84,184-195,198-208,272-281
1ylh A:207-227,263-269,269-275,276-281
3dxt A:117-129,198-206,206-217,277-286
3dxu A:117-129,198-206,206-217,277-286
3gxm C:415-428,436-440,444-452,454-464
3gxm B:415-428,435-440,444-452,454-464
2wmk B:723-741,875-884,886-894,895-904
2wmk A:723-741,875-884,886-894,895-904
2wwj B:113-125,193-202,205-213,273-282
3p8m A:14-33,60-70,72-79,80-88
3p8m B:14-33,60-69,72-79,80-88
3fos A:5-44,118-122,122-132,134-145
2vzv B:67-74,134-143,145-152,180-190
2vzv A:67-74,134-143,145-152,180-190
3i1k C:76-83,189-195,205-217,277-284
3i1k B:76-83,189-195,205-216,277-284
3i1k A:76-83,189-195,205-216,277-284
2jai A:38-58,183-189,221-226,230-237
3opw A:161-176,240-249,249-259,321-329
3i1l B:76-83,189-195,205-217,277-284
3i1l A:76-83,189-195,205-216,277-284
3i1l C:76-83,189-195,205-217,277-284
4a1b J:31-43,157-161,197-201,202-207
3dyo C:70-77,137-145,148-155,180-191
3dyo A:70-77,137-145,148-155,180-191
3dyo B:70-77,137-145,148-155,180-191
2vxo A:104-115,145-150,175-181,182-188
2vxo B:104-115,145-152,175-181,182-188
3h9y B:344-352,459-470,474-481,520-528
2q1z D:21-36,136-143,145-153,185-194
1ytm B:1200-1220,1257-1263,1263-1269,1270-1275
1ytm A:200-220,256-263,263-269,270-275
3jyb B:61-69,102-108,112-121,155-165
3jyb A:61-69,102-109,112-121,155-165
2ci3 A:38-58,183-189,221-226,230-236
3p8e B:39-59,184-190,222-227,231-238
3p8e A:39-59,184-190,222-227,231-238
3fm7 E:14-33,60-70,72-79,80-88
3fm7 B:11-28,72-84,88-97,99-111
3fm7 F:14-33,60-70,72-79,80-88
3fm7 A:11-27,72-84,88-97,99-111
2p4e A:430-438,630-638,643-651,652-659
3i2e B:39-59,184-190,222-227,231-238
3i2e A:39-59,184-190,222-227,231-238
2wmj A:723-741,875-884,886-894,895-904
2wmj B:723-741,875-884,886-894,895-904
3keh A:415-428,436-440,444-452,454-464
3a47 A:117-127,147-151,163-169,170-176
3fij H:162-169,179-186,188-193,201-206
3fij F:162-169,179-186,188-193,201-206
3fij D:162-169,179-186,188-193,201-206
3fij B:162-169,179-186,188-193,201-206
3fij C:162-169,179-186,188-193,201-206
3fij A:162-169,179-186,188-193,201-206
3fij E:162-169,179-186,188-193,201-206
3kb5 A:278-286,379-387,411-420,421-430
3gxd A:415-428,435-440,444-452,454-464
3gxd C:415-428,436-440,444-452,454-464
3gxd B:415-428,436-440,444-452,454-464
3gxd D:415-428,436-440,444-452,454-464
2wmf A:314-332,464-472,474-482,483-492
2c5q E:2-11,164-171,173-179,180-186
2c5q D:2-11,164-170,172-179,180-186
2c5q F:2-11,164-171,172-179,180-187
2c5q A:2-11,164-170,172-179,180-186
2c5q B:2-11,164-171,173-179,180-186
2c5q C:2-11,164-171,173-179,180-186
3gcx A:430-438,630-638,643-651,652-659
3nbn A:18-29,353-363,367-373,406-417
3nbn D:18-29,353-363,367-373,406-417
2y1v B:48-61,136-144,155-163,176-188
2y1v A:48-60,137-144,155-163,176-188
2y1v C:48-61,137-144,155-163,176-188
3dvp A:14-32,60-70,72-79,80-88
3dvp B:14-32,60-70,72-79,80-88
2wmg A:314-332,464-472,474-482,483-492
2w59 B:358-366,472-484,487-494,543-550
3i3e B:70-77,137-145,148-155,180-191
3i3e A:70-77,137-145,148-155,180-191
3i3e C:70-77,137-145,148-155,180-191
3i3e D:70-77,137-145,148-155,181-191
3noj A:19-30,161-165,166-174,175-182
3njy B:113-125,194-202,202-213,273-282
3i27 D:67-75,174-183,193-204,269-277
3i27 A:67-75,174-183,193-204,269-277
3i27 B:67-75,174-183,193-204,269-277
3aj7 A:117-127,147-151,163-169,170-176
2y5w B:113-130,168-173,211-225,226-240
2y5w A:113-129,168-173,211-225,226-240
3ha0 F:344-352,459-471,474-481,520-528
3ha0 A:344-352,459-470,474-481,520-528
2kxl A:240-252,265-270,270-277,314-324
3axi A:117-127,147-151,163-169,170-176
2wl1 A:589-597,687-695,716-725,726-735
2xju A:56-63,80-84,161-168,214-226
2xju A:50-57,80-84,161-168,214-226
2qtw B:430-438,630-638,643-651,652-659
3i26 C:67-75,174-183,193-204,269-277
3i26 D:67-75,174-183,193-204,269-277
3i26 A:67-75,174-183,193-204,269-277
3i26 B:67-75,174-183,193-204,269-277
4a19 J:31-43,157-161,197-201,202-207
2f8x C:18-29,353-363,367-373,406-417
3i3d A:70-77,137-145,148-155,180-191
3i3d C:70-77,137-145,148-155,180-191
3i3d D:70-77,137-145,148-155,181-191
3i3d B:70-77,137-145,148-155,180-190
3hn3 A:54-62,116-125,128-135,165-174
3hn3 B:54-62,117-125,128-135,165-174
3hn3 B:54-62,124-128,128-135,165-174
3muz 2:70-77,137-145,148-155,180-191
3muz 3:70-77,137-145,148-155,180-191
3muz 1:70-77,137-145,148-155,180-191
3muz 4:70-77,137-145,148-155,181-191
2ci5 B:38-58,183-189,221-226,230-236
2ci5 A:38-58,183-189,221-226,230-236
2zuw B:409-431,696-701,703-710,713-720
2xqq A:14-33,60-67,72-79,80-88
2xqq B:14-33,62-67,72-79,80-88
2xqq C:14-33,60-67,72-79,80-88
2xqq D:14-33,62-67,72-79,80-88
3mv0 2:70-77,137-145,148-155,180-191
3mv0 1:70-77,137-145,148-155,180-191
3mv0 3:70-77,137-145,148-155,180-191
3mv0 4:70-77,137-145,148-155,181-191
3iap A:70-77,137-145,148-155,180-191
3iap C:70-77,137-145,148-155,180-191
3iap B:70-77,137-145,148-155,180-191
3iap D:70-77,137-145,148-155,181-191
2aty A:175-182,291-300,306-313,351-358
2w2i B:114-126,195-203,203-214,274-283
2w2i C:114-126,195-203,203-214,274-283
2w2i A:114-126,195-203,203-214,274-283
2bq8 X:23-41,257-263,269-277,279-288
3i3b C:70-77,137-145,148-155,180-191
3i3b B:70-77,137-145,148-155,180-191
3i3b A:70-77,137-145,148-155,180-190
3i3b D:70-77,137-145,148-155,181-191
1ygg A:207-227,263-269,269-275,276-281
3dym D:70-77,137-145,148-155,181-191
3dym B:70-77,137-145,148-155,180-191
3dym C:70-77,137-145,148-155,180-191
3dym A:70-77,137-145,148-155,180-191
2y65 D:113-129,168-173,211-225,226-240
2y65 B:113-129,168-173,211-225,226-240
2y65 C:113-129,168-173,211-225,226-240
2zut D:409-431,696-701,703-710,713-720
3nwn A:114-131,173-179,214-227,236-248
3ei4 B:82-104,113-120,406-412,413-419
3ei4 D:82-104,112-120,406-412,413-419
3ei4 F:82-104,113-120,406-412,413-419
3eqe A:18-30,69-78,80-88,133-143
3eqe B:18-29,69-78,80-88,133-143
3kv6 D:119-129,288-296,296-306,351-360
2pmw B:430-438,630-638,643-651,652-659
3clw C:413-427,433-438,449-458,459-468
2xyz B:143-159,218-223,372-376,419-424
2xyz A:143-159,219-223,371-376,419-424
2xyz E:143-159,218-223,372-376,419-423
2pg1 F:11-28,72-84,87-98,99-111
2pg1 H:11-28,72-84,87-98,99-111
2pg1 G:11-28,72-84,87-98,99-111
2pg1 E:11-28,72-84,87-97,99-111
2d2c C:1-10,81-85,101-106,112-118
2d2c C:1-10,43-53,71-78,145-156
2d2c P:1-10,43-53,71-78,145-156
2d2c P:1-10,81-85,101-106,112-118
1tkw B:1-10,41-51,69-77,144-155