1. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
2b8t d2b8td1 D:24-40,56-61,62-68,91-97
1xx6 d1xx6a1 A:20-36,53-58,60-65,83-89
2uz3 d2uz3d1 D:24-40,56-61,63-68,91-97
2uz3 d2uz3b1 B:24-40,56-60,64-68,91-97
2uz3 d2uz3b1 B:24-40,56-60,64-68,117-124
2. c.23.16 Class I glutamine amidotransferase-like conserved positions of the oxyanion hole and catalytic nucleophile; different constituent families contain different additional structures !
Flavodoxin-like 3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
1g2i d1g2ic_ C:412-427,438-443,445-450,463-471
1g2i d1g2ib_ B:212-227,238-243,245-250,263-271
1g2i d1g2ia_ A:12-27,38-43,45-50,63-71
1sy7 d1sy7a1 A:567-582,592-598,600-605,618-625
2ab0 d2ab0a1 A:14-29,43-48,50-55,68-75
1sy7 d1sy7b1 B:567-582,592-598,600-605,618-625
2ab0 d2ab0b1 B:14-29,43-48,50-55,68-75
3bwe d3bwea1 A:15-30,43-47,49-53,68-75
1pdw d1pdwd_ D:1215-1230,1243-1247,1249-1253,1268-1275
1pdw d1pdwa_ A:15-30,43-47,49-53,68-75
1pdw d1pdwe_ E:2015-2030,2043-2047,2049-2053,2068-2075
3bwe d3bwed1 D:615-630,643-647,649-653,668-675
1pdw d1pdwb_ B:215-230,243-247,249-253,268-275
1pe0 d1pe0b_ B:215-230,243-247,249-253,268-275
1j42 d1j42a_ A:15-30,43-47,49-53,68-75
1pdw d1pdwh_ H:3215-3230,3243-3247,3249-3253,3268-3275
3bwe d3bweb1 B:215-230,243-247,249-253,268-275
1p5f d1p5fa_ A:15-30,43-47,49-53,68-75
1pdw d1pdwc_ C:1015-1030,1043-1047,1049-1053,1068-1075
1q2u d1q2ua_ A:15-30,43-47,49-53,68-75
1pdw d1pdwg_ G:3015-3030,3043-3047,3049-3053,3068-3075
1soa d1soaa_ A:15-30,43-47,49-53,68-75
1pdv d1pdva_ A:15-30,43-47,49-53,68-75
1pdw d1pdwf_ F:2215-2230,2243-2247,2249-2253,2268-2275
2or3 d2or3a1 A:15-30,43-47,49-53,68-75
1ucf d1ucfa_ A:15-30,43-47,49-53,68-75
1ucf d1ucfb_ B:15-30,43-47,49-53,68-75
1pe0 d1pe0a_ A:15-30,43-47,49-53,68-75
3bwe d3bwee1 E:815-830,843-847,849-853,868-875
2r1u d2r1ua1 A:15-30,43-47,49-53,68-75
2r1u d2r1ub1 B:15-30,43-47,49-53,68-75
2or3 d2or3b1 B:15-30,43-47,49-53,68-75
1gg9 d1gg9b1 B:612-627,638-643,645-650,663-669
1p81 d1p81b1 B:612-627,638-643,645-650,663-669
1p7y d1p7yd1 D:612-627,638-643,645-650,663-669
1ggh d1gghb1 B:612-627,638-643,645-650,663-669
1gg9 d1gg9d1 D:612-627,638-643,645-650,663-669
1ggh d1gghd1 D:612-627,638-643,645-650,663-669
1qws d1qwsb1 B:612-627,638-643,645-650,663-669
1p80 d1p80b1 B:612-627,638-643,645-650,663-669
1ggj d1ggjb1 B:612-627,638-643,645-650,663-669
1p7z d1p7za1 A:612-627,638-643,645-650,663-669
1ggj d1ggjd1 D:612-627,638-643,645-650,663-669
1gge d1ggeb1 B:612-627,638-643,645-650,663-669
1cf9 d1cf9b1 B:612-627,638-643,645-650,663-669
1cf9 d1cf9d1 D:612-627,638-643,645-650,663-669
1qws d1qwsd1 D:612-627,638-643,645-650,663-669
1p81 d1p81d1 D:612-627,638-643,645-650,663-669
1cf9 d1cf9c1 C:612-627,638-643,645-650,663-669
1ggf d1ggfd1 D:612-627,638-643,645-650,663-669
1gge d1ggea1 A:612-627,638-643,645-650,663-669
1p7y d1p7ya1 A:612-627,638-643,645-650,663-669
1gg9 d1gg9a1 A:612-627,638-643,645-650,663-669
1cf9 d1cf9a1 A:612-627,638-643,645-650,663-669
1p81 d1p81a1 A:612-627,638-643,645-650,663-669
1ggk d1ggka1 A:612-627,638-643,645-650,663-669
1ggk d1ggkb1 B:612-627,638-643,645-650,663-669
1ggj d1ggja1 A:612-627,638-643,645-650,663-669
1qws d1qwsa1 A:612-627,638-643,645-650,663-669
1ggf d1ggfa1 A:612-627,638-643,645-650,663-669
1iph d1iphc1 C:612-627,638-643,645-650,663-669
1ggh d1ggha1 A:612-627,638-643,645-650,663-669
1iph d1iphb1 B:612-627,638-643,645-650,663-669
1iph d1ipha1 A:612-627,638-643,645-650,663-669
1iph d1iphd1 D:612-627,638-643,645-650,663-669
1qf7 d1qf7a1 A:612-627,638-643,645-650,663-669
1p80 d1p80a1 A:612-627,638-643,645-650,663-669
1ggk d1ggkc1 C:612-627,638-643,645-650,663-669
3bwe d3bwef1 F:1015-1030,1043-1047,1049-1053,1068-1074
3bwe d3bwec1 C:415-430,443-447,449-453,468-474
1ggk d1ggkd1 D:612-627,638-643,645-650,663-669
1p7z d1p7zb1 B:613-627,638-643,645-650,663-669
1p7y d1p7yb1 B:613-627,638-643,645-650,663-669
1p7z d1p7zd1 D:613-627,638-643,645-650,663-669
1p7z d1p7zc1 C:613-627,638-643,645-650,663-669
1p81 d1p81c1 C:613-627,638-643,645-650,663-669
1gge d1ggec1 C:613-627,638-643,645-650,663-669
1gge d1gged1 D:613-627,638-643,645-650,663-669
1ggf d1ggfb1 B:613-627,638-643,645-650,663-669
1p80 d1p80c1 C:613-627,638-643,645-650,663-669
1ggh d1gghc1 C:613-627,638-643,645-650,663-669
1gg9 d1gg9c1 C:613-627,638-643,645-650,663-669
1p80 d1p80d1 D:613-627,638-643,645-650,663-669
1p7y d1p7yc1 C:613-627,638-643,645-650,663-669
1ggj d1ggjc1 C:613-627,638-643,645-650,663-669
1ggf d1ggfc1 C:613-627,638-643,645-650,663-669
1qf7 d1qf7d1 D:613-627,638-643,645-650,663-669
1qf7 d1qf7c1 C:613-627,638-643,645-650,663-669
1qf7 d1qf7b1 B:613-627,638-643,645-650,663-669
1qws d1qwsc1 C:613-627,638-643,645-650,663-669
3. d.142.1 Glutathione synthetase ATP-binding domain-like
ATP-grasp Consists of two subdomains with different alpha+beta folds ! shares functional and structural similarities with the PIPK and protein kinase superfamilies
1jde d1jdea3 A:20-33,88-95,235-242,329-339
1vkz d1vkza3 A:94-106,130-137,173-178,267-277
1vkz d1vkzb3 B:94-106,130-137,173-178,267-277
2dik d2dika3 A:20-33,88-95,235-242,330-339
1bxr d1bxra6 A:674-686,711-717,749-755,835-845
1dik d1dika3 A:20-33,88-95,235-242,329-339
1kc7 d1kc7a3 A:20-33,88-95,235-242,329-339
1ggo d1ggoa3 A:20-33,88-95,235-242,330-339
1bxr d1bxre6 E:674-686,711-717,749-755,835-845
1bxr d1bxrg6 G:674-686,711-717,749-755,835-845
1bxr d1bxra5 A:128-140,164-171,203-209,292-303
1kbl d1kbla3 A:20-33,88-95,235-242,329-339
1bxr d1bxrc6 C:674-686,710-717,749-755,835-845
1m6v d1m6va5 A:128-140,164-171,203-209,292-303
1ce8 d1ce8a5 A:128-140,164-171,203-209,292-303
1ce8 d1ce8c5 C:128-140,165-171,203-209,292-303
1gsa d1gsaa2 A:123-132,155-161,194-200,277-284
1c30 d1c30c5 C:128-140,165-171,203-209,292-303
1ce8 d1ce8e5 E:128-140,164-171,203-209,292-303
1bxr d1bxre5 E:128-140,165-171,203-209,292-303
1t36 d1t36c5 C:128-140,164-171,203-209,292-303
1c30 d1c30g5 G:128-140,164-171,203-209,292-303
1cs0 d1cs0e5 E:128-140,165-171,203-209,292-303
1a9x d1a9xa5 A:128-140,164-171,203-209,292-303
1c3o d1c3oa5 A:128-140,164-171,203-209,292-303
1m6v d1m6ve5 E:128-140,164-171,203-209,292-303
3etj d3etja3 A:79-91,116-122,149-155,232-242
1m6v d1m6vg5 G:128-140,164-171,203-209,292-303
1c3o d1c3oc5 C:128-140,164-171,203-209,292-303
1cs0 d1cs0a5 A:128-140,164-171,203-209,292-303
1c30 d1c30e5 E:128-140,165-171,203-209,292-303
1cs0 d1cs0c5 C:128-140,164-171,203-209,292-303
1cs0 d1cs0g5 G:128-140,164-171,203-209,292-303
1c30 d1c30a5 A:128-140,164-171,203-209,292-303
2dln d2dlna2 A:96-108,139-146,176-182,264-273
1m6v d1m6vc5 C:128-140,164-171,203-209,292-303
1jdb d1jdbh5 H:127-139,163-170,202-208,291-302
1a9x d1a9xc5 C:2128-2140,2164-2171,2203-2209,2292-2303
1kee d1keea5 A:128-140,164-171,203-209,292-303
1t36 d1t36e5 E:128-140,165-171,203-209,292-303
1kee d1keec5 C:128-140,164-171,203-209,292-303
1bxr d1bxrg5 G:128-140,164-171,203-209,292-303
1ce8 d1ce8g5 G:128-140,164-171,203-209,292-303
1a9x d1a9xg5 G:6128-6140,6164-6171,6203-6209,6292-6303
1c3o d1c3og5 G:128-140,164-171,203-209,292-303
1jdb d1jdbe5 E:127-139,163-170,202-208,291-302
1iov d1iova2 A:96-108,139-146,176-182,264-273
1t36 d1t36g5 G:128-140,164-171,203-209,292-303
1c3o d1c3oe5 E:128-140,164-171,203-209,292-303
1bxr d1bxrc5 C:128-140,164-171,203-209,292-303
1jdb d1jdbk5 K:127-139,163-170,202-208,291-302
1kee d1keee5 E:128-140,164-171,203-209,292-303
1t36 d1t36a5 A:128-140,164-171,203-209,292-303
1a9x d1a9xe5 E:4128-4140,4164-4171,4203-4209,4292-4303
1kee d1keeg5 G:128-140,164-171,203-209,292-303
1jdb d1jdbb5 B:127-139,164-170,202-208,291-302
2r7m d2r7ma2 A:124-136,152-157,196-201,304-314
2j9g d2j9gb3 B:115-127,155-161,197-203,282-292
1dv2 d1dv2b3 B:115-127,155-161,197-203,282-292
1iow d1iowa2 A:96-108,139-146,176-182,264-273
1dv2 d1dv2a3 A:115-127,154-161,197-203,282-292
2j9g d2j9ga3 A:115-127,154-161,197-203,282-292
2vr1 d2vr1a3 A:115-127,154-161,197-203,282-292
1e4e d1e4eb2 B:132-144,166-173,202-209,299-308
1i7l d1i7la2 A:225-241,265-272,301-308,381-391
1i7l d1i7lb2 B:225-241,265-272,301-308,381-391
1e4e d1e4ea2 A:132-144,166-173,202-209,299-308
2nu8 d2nu8b2 B:4-16,42-48,95-101,207-213
2nu8 d2nu8e2 E:4-16,42-48,95-101,207-213
2nu6 d2nu6b2 B:4-16,42-48,95-101,207-213
2nu7 d2nu7b2 B:4-16,42-48,95-101,207-213
2nu6 d2nu6e2 E:4-16,42-48,95-101,207-213
2nu7 d2nu7e2 E:4-16,42-48,95-101,207-213
1jkj d1jkjb2 B:4-16,42-48,95-101,207-213
1jkj d1jkje2 E:4-16,42-48,95-101,207-213
2fp4 d2fp4b2 B:4-16,42-48,102-108,214-220
2nu9 d2nu9i2 I:4-16,42-48,95-101,207-213
2nu9 d2nu9g2 G:4-16,42-48,95-101,207-213
2nu9 d2nu9b2 B:4-16,42-48,95-101,207-213
1jll d1jlle2 E:4-16,42-48,95-101,207-213
2nua d2nuab2 B:4-16,42-48,95-101,207-213
2nu9 d2nu9e2 E:4-16,42-48,95-101,207-213
2nua d2nuae2 E:4-16,42-48,95-101,207-213
1jll d1jllb2 B:4-16,42-48,95-101,207-213
2fpg d2fpgb2 B:4-16,42-48,102-108,214-220
1scu d1scub2 B:4-16,42-48,95-101,207-213
2scu d2scue2 E:4-16,42-48,95-101,207-213
1cqj d1cqjb2 B:4-16,42-48,95-101,207-213
1cqj d1cqje2 E:4-16,42-48,95-101,207-213
2scu d2scub2 B:4-16,42-48,95-101,207-213
1cqi d1cqie2 E:4-16,42-48,95-101,207-213
1cqi d1cqib2 B:4-16,42-48,95-101,207-213
1scu d1scue2 E:4-16,42-48,95-101,207-213
2fpi d2fpib2 B:4-16,42-48,102-108,214-220
4. c.1.9 Metallo-dependent hydrolases the beta-sheet barrel is similarly distorted and capped by a C-terminal helix ! has transition metal ions bound inside the barrel !
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
2eg6 d2eg6a1 A:273-286,318-322,337-343,342-346
1j79 d1j79a_ A:273-286,318-322,337-343,342-346
1xge d1xgea1 A:273-286,318-322,337-343,342-346
2eg6 d2eg6b1 B:273-286,318-322,337-343,342-346
2eg7 d2eg7a1 A:273-286,318-322,337-343,342-346
2eg7 d2eg7b1 B:273-286,318-322,337-343,342-346
2eg8 d2eg8a1 A:273-286,318-322,337-343,342-346
1j79 d1j79b_ B:273-286,318-322,337-343,342-346
5. b.82.1 RmlC-like cupins
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
2bdr d2bdra1 A:10-18,79-86,116-122,123-127
1xsq d1xsqb_ B:9-17,77-84,114-120,121-125
1xsq d1xsqa_ A:9-17,77-84,114-120,121-125
1yqc d1yqcb1 B:9-17,77-84,114-120,121-125
1xru d1xrub1 B:8-15,215-222,225-232,234-240
1x8m d1x8ma_ A:1010-1017,1217-1224,1227-1234,1236-1243
1xru d1xrua1 A:8-15,215-222,225-232,234-240
1x8m d1x8me_ E:5010-5017,5217-5224,5227-5234,5236-5243
1x8m d1x8mb_ B:2010-2017,2217-2224,2227-2234,2236-2243
1x8m d1x8md_ D:4010-4017,4217-4224,4227-4234,4236-4243
1x8m d1x8mc_ C:3010-3017,3217-3224,3227-3234,3236-3243
1x8m d1x8mf_ F:6010-6017,6217-6224,6227-6234,6236-6243
6. d.169.1 C-type lectin-like
C-type lectin-like unusual fold
1kzd d1kzd2_ 2:140-152,153-157,194-200,215-220
1hup d1hupa1 A:147-158,160-164,201-207,222-228
1bv4 d1bv4d_ D:145-157,158-162,198-205,220-225
1z52 d1z52a1 A:34-42,44-51,53-59,72-78
3c0o d3c0oa1 A:34-42,44-51,53-59,72-78
1v4l d1v4lf_ F:246-262,263-268,296-304,319-325
1prt d1prtb2 B:38-49,53-58,59-65,86-90
1z52 d1z52b1 B:34-43,44-51,53-59,72-78
1prt d1prth2 H:38-49,53-58,59-65,86-90
1pto d1ptob2 B:38-49,53-58,59-65,86-90
1ypo d1ypob1 B:184-196,199-204,241-248,262-268
1pto d1ptoh2 H:38-49,53-58,59-66,86-90
1bcp d1bcph2 H:38-49,53-58,59-65,86-90
1bcp d1bcpb2 B:38-49,53-58,59-65,86-90
1prt d1prti2 I:38-50,51-58,59-65,86-90
1prt d1prtc2 C:38-50,51-58,59-65,86-90
1pto d1ptoi2 I:38-50,51-58,59-65,86-90
1pto d1ptoc2 C:38-50,51-58,59-65,86-90
1bcp d1bcpc2 C:38-49,51-58,59-65,86-90
1bcp d1bcpi2 I:38-49,51-58,59-65,86-90
1ypo d1ypod1 D:184-196,199-204,241-248,262-268
1c3a d1c3ab_ B:246-262,264-268,296-303,319-325
7. c.26.2 Adenine nucleotide alpha hydrolases-like share similar mode of ligand (Adenosine group) binding ! can be subdivided into two group with closer relationships within each group than between the groups; the first three families form one group whereas the last two families form the other group !
Adenine nucleotide alpha hydrolase-like core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
2d13 d2d13a1 A:51-63,140-148,186-194,198-205
2d13 d2d13b1 B:52-63,140-148,186-194,198-205
2d13 d2d13c1 C:53-63,140-148,186-194,198-205
2d13 d2d13d1 D:54-63,140-148,186-194,198-205
8. c.8.1 Phosphohistidine domain contains barrel, closed, n=7, S=10 !
The "swivelling" beta/beta/alpha domain 3 layers: b/b/a; the central sheet is parallel, and the other one is antiparallel; there are some variations in topology ! this domain is thought to be mobile in most multi-domain proteins known to contain it
1kc7 d1kc7a2 A:382-389,494-501,502-509,511-515
1kbl d1kbla2 A:382-390,494-501,502-509,511-515
9. e.22.1 Dehydroquinate synthase-like
Dehydroquinate synthase-like 2 domains: (1) alpha/beta of a Rossmann-fold topology, binds NAD (2) multihelical array
1dqs d1dqsb_ B:114-128,150-156,163-169,171-178
10. e.3.1 beta-lactamase/transpeptidase-like
beta-lactamase/transpeptidase-like contains a cluster of helices and an alpha+beta sandwich
1u60 d1u60d_ D:201-215,216-220,221-225,273-281
1u60 d1u60b_ B:201-215,216-220,221-225,273-281
1u60 d1u60c_ C:201-215,216-220,221-225,273-281
1u60 d1u60a_ A:201-215,216-220,221-225,273-281
11. b.6.1 Cupredoxins contains copper-binding site !
Cupredoxin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands
3ehb d3ehbb1 B:96-106,179-187,188-196,199-206
2fwl d2fwlb1 B:39-46,112-119,123-129,132-138
12. b.112.1 C-terminal domain of mollusc hemocyanin analogous to the Ig-like domain of arthropod hemocyanin; similar sequential but different spatial position relative the shared domain !
C-terminal domain of mollusc hemocyanin six-stranded beta-sandwich, jelly-roll/greek-key topology
1lnl d1lnla2 A:155-168,318-330,333-346,356-362
13. b.40.4 Nucleic acid-binding proteins
OB-fold barrel, closed or partly opened n=5, S=10 or S=8; greek-key
1otc d1otcb_ B:12-25,49-54,56-60,110-120
1ph1 d1ph1b_ B:12-25,49-54,56-60,110-120
1ph9 d1ph9b_ B:12-25,49-54,56-60,110-120
1ph8 d1ph8b_ B:12-25,49-54,56-60,110-120
2i0q d2i0qb1 B:12-25,49-54,56-60,110-120
14. d.174.1 Nitric oxide (NO) synthase oxygenase domain
Nitric oxide (NO) synthase oxygenase domain unusual fold
3ebd d3ebdb1 B:213-230,300-306,310-314,344-354
3e6n d3e6nb1 B:213-230,300-306,310-314,344-354
3e6o d3e6ob1 B:213-230,300-306,310-314,344-354
1jwk d1jwka_ A:213-230,300-306,310-314,344-354
3e6t d3e6tb1 B:213-230,300-306,310-314,344-354
1m8i d1m8ib_ B:213-230,300-306,310-314,344-354
3e68 d3e68a1 A:213-230,300-306,310-314,344-354
3e67 d3e67b1 B:213-230,300-306,310-314,344-354
1jwk d1jwkb_ B:213-230,300-306,307-314,344-354
3eai d3eaia1 A:213-230,300-306,307-314,344-354
4nos d4nosc_ C:219-236,306-312,313-320,350-360
3e6o d3e6oa1 A:213-230,300-306,307-314,344-354
3e7m d3e7ma1 A:213-230,300-306,307-314,344-354
3e6n d3e6na1 A:213-230,300-306,307-314,344-354
1m8i d1m8ia_ A:213-230,300-306,307-314,344-354
1m8h d1m8hb_ B:213-230,300-306,307-314,344-354
1jwj d1jwjb_ B:213-230,300-306,307-314,344-354
1m8h d1m8ha_ A:213-230,300-306,307-314,344-354
1jwj d1jwja_ A:213-230,300-306,307-314,344-354
3e6t d3e6ta1 A:213-230,300-306,307-314,344-354
3e65 d3e65a1 A:213-230,300-306,307-314,344-354
1dwv d1dwva_ A:213-230,300-306,307-314,344-354
1noc d1noca_ A:213-230,300-306,307-314,344-354
3e7i d3e7ia1 A:213-230,300-306,307-314,344-354
1m8d d1m8da_ A:213-230,300-306,307-314,344-354
1dwx d1dwxb_ B:213-230,300-306,307-314,344-354
1m8e d1m8eb_ B:213-230,300-306,307-314,344-354
3e67 d3e67a1 A:213-230,300-306,307-314,344-354
1m8e d1m8ea_ A:213-230,300-306,307-314,344-354
1qom d1qoma_ A:213-230,300-306,307-314,344-354
2nod d2nodb_ B:213-230,300-306,307-314,344-354
1vaf d1vafa_ A:213-230,300-306,307-314,344-354
1dwx d1dwxa_ A:213-230,300-306,307-314,344-354
3nod d3noda_ A:213-230,300-306,307-314,344-354
1nod d1noda_ A:213-230,300-306,307-314,344-354
2nod d2noda_ A:213-230,300-306,307-314,344-354
1df1 d1df1a_ A:213-230,300-306,307-314,344-354
1df1 d1df1b_ B:213-230,300-306,307-314,344-354
3nod d3nodb_ B:213-230,300-306,307-314,344-354
1nod d1nodb_ B:213-230,300-306,307-314,344-354
15. b.34.14 PAZ domain
SH3-like barrel barrel, partly opened; n*=4, S*=8; meander ! the last strand is interrupted by a turn of 3-10 helix
2f8s d2f8sa1 A:219-233,239-245,247-252,254-259
16. f.4.3 Porins
Transmembrane beta-barrels not a true fold, gathers together transmembrane barrels of different (n,S)
1by5 d1by5a_ A:248-255,628-644,650-666,688-693
1qjq d1qjqa_ A:248-255,639-655,661-677,699-704
1qkc d1qkca_ A:248-255,639-655,661-677,699-704
1fcp d1fcpa_ A:248-255,637-653,659-675,697-702
1qff d1qffa_ A:248-255,639-655,661-677,699-704
1qfg d1qfga_ A:248-255,639-655,661-678,699-704
2fcp d2fcpa_ A:248-255,637-653,659-676,697-702
1fi1 d1fi1a_ A:248-255,639-655,661-678,699-704
1by3 d1by3a_ A:248-255,628-645,649-666,688-693
2grx d2grxb1 B:248-255,639-656,660-677,699-704
2grx d2grxa1 A:248-255,639-656,660-677,699-704
17. b.92.1 Composite domain of metallo-dependent hydrolases this domain is interrupted by the catalytic beta/alpha barrel domain !
Composite domain of metallo-dependent hydrolases pseudobarrel; mixed sheet of 7 strand folded upon itself and "buckled" by two beta-turns
1kcx d1kcxa1 A:360-373,417-421,435-440,441-449
18. b.71.1 Glycosyl hydrolase domain this domain is C-terminal to the catalytic beta/alpha barrel domain !
Glycosyl hydrolase domain folded sheet; greek-key
2c7f d2c7fe1 E:324-342,396-402,403-410,422-431
19. d.38.1 Thioesterase/thiol ester dehydrase-isomerase
Thioesterase/thiol ester dehydrase-isomerase core: beta-alpha-beta(4); 2 layers: alpha/beta
2gvh d2gvhb1 B:36-56,91-105,106-123,135-139
1y7u d1y7uc1 C:35-56,91-105,106-122,132-136
1y7u d1y7ub1 B:35-56,91-105,106-122,132-136
1vpm d1vpmb_ B:30-51,86-100,101-117,127-131
1vpm d1vpma_ A:30-51,86-100,101-117,127-131
1y7u d1y7ua1 A:35-56,91-105,106-122,132-136
20. d.3.1 Cysteine proteinases the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet !
Cysteine proteinases consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
2gfo d2gfoa1 A:868-885,927-938,939-950,951-955
21. e.1.1 Serpins
Serpins contains a cluster of helices and a beta-sandwich
1br8 d1br8l_ L:79-94,211-224,378-391,417-427
1jti d1jtia_ A:30-45,169-183,337-352,373-383
1jti d1jtib_ B:30-45,169-183,337-352,373-383
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 171 (enumeration index: query78) of S4
3cy6 A:15-30,43-47,49-53,68-75
3rup B:115-127,154-161,197-203,282-292
3rup A:115-127,154-161,197-203,282-292
2z2a B:273-286,318-322,337-343,342-346
2z2a A:273-286,318-322,337-343,342-346
2w6m B:115-127,155-161,197-203,282-292
2w6m A:115-127,154-161,197-203,282-292
3nqs A:213-230,300-306,307-314,344-354
3nqs B:213-230,300-306,307-314,344-354
3n6c B:205-222,292-298,302-306,336-346
3nsx B:493-508,571-580,601-609,611-616
3nsx A:493-508,571-580,602-609,611-616
3hb9 A:151-163,190-196,232-238,318-328
4a0b D:118-137,403-412,413-421,447-455
2ja1 A:20-36,53-58,60-65,83-89
2ja1 A:20-36,53-58,60-65,108-116
3pha D:493-508,571-580,602-609,611-616
3pha C:493-508,571-580,601-609,611-616
2b39 B:704-713,1398-1407,1440-1448,1454-1464
2yya A:102-114,138-145,181-186,277-287
2yya B:102-114,139-145,181-187,277-287
2e25 A:273-286,318-322,337-343,342-346
2z24 A:273-286,318-322,337-343,342-346
3mkk A:493-508,571-580,601-609,611-616
3m9z A:134-146,186-194,195-202,208-214
3ttv B:612-627,638-643,645-650,663-669
3ttv A:612-627,638-643,645-650,663-669
3ttv D:612-627,638-643,645-650,663-669
3ttv C:613-627,638-643,645-650,663-669
3pq6 D:613-627,638-643,645-650,663-669
3pq6 A:612-627,638-643,645-650,663-669
3pq6 B:612-627,638-643,645-650,663-669
3pq6 C:613-627,638-643,645-650,663-669
2ox8 C:647-659,662-666,707-713,728-734
2ox8 B:647-659,662-666,707-713,728-734
2ox8 D:647-659,662-666,707-713,728-734
3p9p D:612-627,638-643,645-650,663-669
3p9p A:612-627,638-643,645-650,663-669
3p9p B:612-627,638-643,645-650,663-669
3p9p C:612-627,638-643,645-650,663-669
3pq5 C:612-627,638-643,645-650,663-669
3pq5 B:612-627,638-643,645-650,663-669
3pq5 D:612-627,638-643,645-650,663-669
3pq5 A:612-627,638-643,645-650,663-669
3g8c B:115-127,154-161,197-203,282-292
3g8c A:115-127,155-161,197-203,282-292
3uk7 A:16-31,43-54,60-72,83-90
3uk7 B:17-31,43-54,60-72,83-89
3uk7 A:209-224,236-247,253-266,276-283
3uk7 C:16-31,43-54,60-72,83-89
3uk7 C:209-224,238-247,253-263,276-283
3uk7 B:209-224,236-247,253-265,276-283
2z27 A:273-286,318-322,337-343,342-346
2xd4 A:102-114,138-145,181-187,277-287
2z28 B:273-286,318-322,337-343,342-346
2z28 A:273-286,318-322,337-343,342-346
3bhn A:13-28,40-45,47-52,63-69
3r23 B:94-106,132-138,167-174,254-263
3r23 A:94-106,132-138,167-174,254-263
2z29 A:273-286,318-322,337-343,342-346
2vrn A:21-36,47-54,56-64,77-83
3oh3 A:452-472,482-486,489-493,572-578
1z2o X:93-105,131-138,163-170,285-293
3gra B:41-60,73-78,80-87,97-103
3gra A:41-60,73-78,80-87,97-103
2vdy B:44-60,172-184,334-349,370-380
2vdy A:44-59,172-184,334-349,370-380
3fot A:305-322,332-341,357-366,433-442
2vpq B:114-126,152-159,195-201,281-292
2vpq A:114-126,152-159,195-201,281-292
2v5a A:115-127,154-161,197-203,282-292
2v5a B:115-127,155-161,197-203,282-292
3ih9 A:200-214,215-219,220-224,272-280
3ih9 B:200-214,215-219,220-224,272-280
3tw7 A:123-135,162-167,205-210,292-301
3tw7 B:123-135,162-167,205-210,290-301
3s25 A:39-46,84-92,93-101,293-300
3sf8 B:15-30,43-47,49-53,68-74
3sf8 A:15-30,43-47,49-53,68-74
3n04 A:493-508,571-580,601-609,611-616
3n04 B:493-508,571-580,601-609,611-616
3ewn A:65-80,93-97,99-103,116-122
3top A:1598-1616,1681-1685,1707-1713,1714-1721
3top B:1598-1616,1681-1685,1707-1713,1714-1721
2z8s B:354-361,365-369,376-381,398-407
3b38 A:15-30,43-47,49-53,68-75
3h9a B:3-13,176-182,183-189,190-198
3h9a A:3-13,176-182,183-189,190-198
2r7s A:236-255,513-521,666-672,674-678
3f70 A:180-189,236-240,241-248,539-546
3f70 B:180-189,236-240,241-248,540-546
3iha A:200-214,215-219,220-224,272-280
3iha B:200-214,215-219,220-224,272-280
3age A:200-214,215-219,220-224,272-280
3age B:200-214,215-219,220-224,272-280
2rk4 A:15-30,43-47,49-53,68-75
3afc B:31-38,445-452,463-471,505-511
2r1t B:15-30,43-47,49-53,68-75
2r1t A:15-30,43-47,49-53,68-75
3ouz B:116-128,154-161,197-203,283-293
3ouz A:116-128,154-161,197-203,283-293
2w71 C:115-127,154-161,197-203,282-292
2w71 A:115-127,154-161,197-203,282-292
3pq2 B:612-627,638-643,645-650,663-669
3pq2 A:612-627,638-643,645-650,663-669
3pq2 D:612-627,638-643,645-650,663-669
3pq2 C:612-627,638-643,645-650,663-669
2y7c A:45-52,76-83,91-98,98-104
2r1v B:15-30,43-47,49-53,68-75
2r1v A:15-30,43-47,49-53,68-75
2r7r A:236-255,513-521,666-672,674-678
3if5 A:200-214,215-219,220-224,272-280
2r7u A:236-255,513-521,666-672,674-678
3nda B:33-48,163-175,326-341,365-375
3nda A:33-48,162-175,326-341,365-375
2v58 B:115-127,155-161,197-203,282-292
2v58 A:115-127,154-161,197-203,282-292
2r7q A:236-255,513-521,666-672,674-678
3m46 B:493-508,571-580,601-609,611-616
3oh2 A:452-472,482-486,489-493,572-578
3agd A:200-214,215-219,220-224,272-280
3agd B:200-214,215-219,220-224,272-280
3oh1 A:452-472,482-486,489-493,572-578
3jzi B:115-127,154-161,197-203,282-292
3jzi A:115-127,155-161,197-203,282-292
2rk6 A:15-30,43-47,49-53,68-75
2z25 B:273-286,318-322,337-343,342-346
2z25 A:273-286,318-322,337-343,342-346
3rk1 A:51-63,140-148,186-194,199-205
3rk1 B:51-63,139-148,186-195,199-205
2z26 A:273-286,318-322,337-343,342-346
2w80 H:80-87,109-116,117-123,125-131
3b36 A:15-30,43-47,49-53,68-75
2r7v A:236-255,513-521,666-672,674-678
1z2p X:93-105,131-138,163-170,285-293
3h7y B:5-13,176-182,183-189,190-198
3ttt D:612-627,638-643,645-650,663-669
3ttt A:612-627,638-643,645-650,663-669
3ttt B:612-627,638-643,645-650,663-669
3ttt C:612-627,638-643,645-650,663-669
2vz8 A:1223-1238,1387-1396,1398-1407,1509-1519
2vz8 B:1223-1238,1387-1396,1398-1406,1509-1519
2vz8 A:1223-1238,1387-1396,1398-1407,1502-1508
3cyf A:15-30,43-47,49-53,68-75
3fp0 A:305-323,332-341,357-366,434-442
3oh4 A:452-472,482-486,489-493,572-578
3l6w B:3058-3072,3221-3231,3236-3247,3259-3265
3cz9 A:15-30,43-47,49-53,68-75
3ogz A:452-472,482-486,489-493,572-578
3qfh C:112-120,195-199,200-204,376-382
3qfh F:112-120,195-199,200-204,376-382
3qfh A:112-120,195-199,200-204,376-382
3ei1 B:118-137,403-412,413-421,447-454
3l4z A:617-634,699-704,725-731,732-739
3rjz A:53-63,140-149,186-194,198-205
3ton B:1598-1616,1681-1685,1707-1713,1714-1721
3ton A:1598-1616,1681-1685,1707-1713,1714-1721
3n3k A:868-885,925-938,939-951,951-955
2w6z A:115-127,154-161,197-203,282-292
2w6z B:115-127,155-161,197-203,282-292
3mjm B:273-286,318-322,337-343,342-346
3mjm A:273-286,318-322,337-343,342-346
2q7d B:105-121,152-159,183-190,288-299
2q7d A:105-121,152-158,183-190,288-299
1z2n X:93-105,131-138,163-170,285-293
2w81 D:80-88,109-116,117-123,125-130
3b3a A:15-30,43-47,49-53,68-75
2v59 B:115-127,155-161,197-203,282-292
2v59 A:115-127,154-161,197-203,282-292
2w6q B:115-127,155-161,197-203,282-292
2w6q A:115-127,154-161,197-203,282-292
3cey B:180-189,236-240,241-248,539-546
3cey A:180-189,236-240,241-248,540-546
3p9q D:612-627,638-643,645-650,663-669
3p9q B:612-627,638-643,645-650,663-669
3p9q A:613-627,638-643,645-650,663-669
3p9q C:612-627,638-643,645-650,663-669
2p1g A:108-120,132-137,169-175,191-200
2p1g B:108-120,132-137,169-175,191-200
2ygb C:279-296,319-324,325-334,339-345
2ygb A:279-296,319-324,325-334,339-345
2ygb B:279-296,319-324,325-334,339-345
3r5x D:94-106,132-138,167-174,254-263
3r5x C:94-106,132-138,167-174,254-263
3r5x B:94-106,131-138,167-174,254-263
3r5x A:94-106,131-138,167-174,254-263
2yw2 B:102-114,138-145,181-187,277-287
2yw2 A:102-114,138-145,181-187,277-287
2qf7 B:123-135,162-167,205-210,290-301
2r7x A:236-255,513-521,666-672,674-678
2r7x B:236-255,513-521,666-672,674-678
3poc B:493-508,571-580,601-609,611-616
3poc A:493-508,571-580,601-609,611-616
3ezg A:15-30,43-47,49-53,68-75
2xcl A:102-114,138-145,181-187,277-287
3ot1 B:18-33,45-50,52-57,70-77
3ot1 A:18-33,45-50,52-57,70-77
2qk4 A:106-118,143-150,186-192,282-292
2qk4 B:106-118,143-150,186-192,282-292
3pif B:137-159,687-691,698-703,705-711
3pif D:137-159,687-691,698-702,705-711
3pif A:137-159,687-691,698-702,705-711
3rv3 B:115-127,154-161,197-203,282-292
3rv3 A:115-127,154-161,197-203,282-292
3ttx B:612-627,638-643,645-650,663-669
3ttx D:612-627,638-643,645-650,663-669
3ttx A:612-627,638-643,645-650,663-669
3ttx C:613-627,638-643,645-650,663-669
3ttu D:613-627,638-643,645-650,663-669
3ttu B:612-627,638-643,645-650,663-669
3ttu A:612-627,638-643,645-650,663-669
3ttu C:612-627,638-643,645-650,663-669
2odt X:105-121,152-158,183-190,288-299
3pq3 B:612-627,638-643,645-650,663-669
3pq3 D:613-627,638-643,645-650,663-669
3pq3 A:612-627,638-643,645-650,663-669
3pq3 C:613-627,638-643,645-650,663-669
3ihb A:200-214,215-219,220-224,272-280
3ihb B:200-214,215-219,220-224,272-280
2qb5 A:105-121,152-159,184-190,288-299
2qb5 B:105-121,152-159,183-190,288-299
2w70 B:115-127,155-161,197-203,282-292
2w70 A:115-127,154-161,197-203,282-292
2w6p A:115-127,154-161,197-203,282-292
3cza A:15-30,43-47,49-53,68-75
2r7t A:236-255,513-521,666-672,674-678
3ttw D:612-627,638-643,645-650,663-669
3ttw A:612-627,638-643,645-650,663-669
3ttw B:612-627,638-643,645-650,663-669
3ttw C:613-627,638-643,645-650,663-669
3mz1 B:174-183,197-203,204-210,233-237
3mz1 C:174-183,197-203,204-210,233-237
3dwj A:213-230,300-306,307-314,344-354
3rk0 A:53-63,140-149,186-194,198-205
2ols A:21-35,121-128,186-193,325-336
3sam C:279-296,319-324,325-334,339-345
3sam A:279-297,319-324,325-334,339-345
3sam B:279-296,319-324,325-334,339-345
3p9s D:612-627,638-643,645-650,663-669
3p9s B:612-627,638-643,645-650,663-669
3p9s A:613-627,638-643,645-650,663-669
3p9s C:612-627,638-643,645-650,663-669
3tii A:73-85,146-152,179-185,325-334
3tii B:73-85,146-152,178-185,325-334
3sps D:30-51,86-100,101-117,127-131
3sps C:30-51,86-100,101-117,127-131
3sps E:30-51,86-100,101-117,127-131
3sps F:30-51,86-100,101-117,127-131
3sps B:30-51,86-100,101-117,127-131
3sps A:30-51,86-100,101-117,127-131
3pq8 D:612-627,638-643,645-650,663-669
3pq8 A:612-627,638-643,645-650,663-669
3pq8 B:612-627,638-643,645-650,663-669
3pq8 C:612-627,638-643,645-650,663-669
3tin A:73-85,146-152,179-185,325-334
2oay A:148-163,264-276,430-441,464-475
3m1u B:48-55,409-418,419-429,429-434
3m1u A:48-55,409-418,419-429,429-434
3jze C:274-287,319-323,338-344,343-347
3jze B:274-287,319-323,338-344,343-347
3jze A:274-287,319-323,338-344,343-347
3jze D:274-287,319-323,338-344,343-347
3pq7 A:612-627,638-643,645-650,663-669
3pq7 D:613-627,638-643,645-650,663-669
3pq7 B:612-627,638-643,645-650,663-669
3pq7 C:612-627,638-643,645-650,663-669
3hb3 B:94-106,179-187,188-196,199-206
2vqd A:115-127,154-161,197-203,282-292
3l18 B:12-27,38-43,45-50,63-69
3l18 A:12-27,38-43,45-50,63-69
3se7 D:129-141,163-170,199-206,296-305
3se7 F:129-141,164-170,199-206,296-305
3se7 B:129-141,164-170,199-206,296-305
3se7 A:129-141,164-170,199-206,296-305
3se7 C:129-141,164-170,199-206,296-305
3se7 E:129-141,163-170,199-206,296-305
2r7w A:236-255,513-521,666-672,674-678
3oh0 A:452-472,482-486,489-493,572-578
2vqz A:390-406,450-454,472-476,477-482
2vqz D:390-406,450-454,472-476,477-482
2vqz E:390-406,450-454,472-476,477-482
2vqz B:390-406,450-454,472-476,477-482
2vqz F:390-406,450-454,472-476,477-482
3lp8 A:102-114,139-145,181-187,277-287
3f71 A:15-30,43-47,49-53,68-75
2vdx A:44-59,172-184,334-349,370-380
2vdx B:44-60,172-184,334-349,370-380
3ih8 B:200-214,215-219,220-224,272-280
3ih8 A:200-214,215-219,220-224,272-280
2vz9 B:1223-1238,1387-1396,1398-1406,1509-1519
2vz9 A:1223-1238,1387-1396,1398-1406,1509-1519
2rk3 A:15-30,43-47,49-53,68-75
3ei3 B:118-137,403-412,413-421,447-454
3tw6 C:123-135,161-168,204-210,291-301
3tw6 B:123-135,161-168,204-210,290-301
3tw6 D:123-135,161-168,204-210,290-301
2ygm A:237-244,286-292,293-299,320-330
2xsm A:314-326,348-353,355-360,366-370
2yl2 A:279-291,343-351,381-388,468-478
3ouu A:116-128,154-161,197-203,283-293
3ouu B:116-128,154-161,197-203,283-293
2p0a A:203-219,243-250,279-286,359-369
2p0a B:203-219,243-250,279-286,359-369
2w6o A:115-127,154-161,197-203,282-292
2w6o C:115-127,155-161,197-203,282-292
2ygl A:237-244,286-292,293-299,320-331
2ygl B:237-244,286-292,293-299,322-330
3h7j B:3-13,176-182,183-189,190-198
3h7j A:3-13,176-182,183-189,190-198
3f6k A:58-67,512-518,524-529,560-571
3rv4 A:115-127,154-161,197-203,282-292
2w6n B:115-127,154-161,197-203,282-292
2w6n A:115-127,154-161,197-203,282-292
3pie B:137-159,687-691,698-703,705-711
3pie D:137-159,687-691,698-702,705-711
3pie A:137-159,687-691,698-702,705-711
3eox A:35-51,162-174,331-343,367-377
2y7h A:45-52,78-83,91-96,99-103
3saq B:279-297,319-324,325-334,339-345
3saq A:279-297,319-324,325-334,339-345
3ei4 D:82-104,369-378,379-387,413-419
3ei4 F:82-104,369-378,379-387,413-419
3ei4 B:82-104,369-378,379-387,413-419
3p9r D:612-627,638-643,645-650,663-669
3p9r A:612-627,638-643,645-650,663-669
3p9r B:612-627,638-643,645-650,663-669
3p9r C:612-627,638-643,645-650,663-669
2vh4 A:84-100,205-219,371-385,410-422
3feo B:13-22,69-73,74-81,365-373
3feo A:13-22,69-73,74-81,365-373
3pq4 D:612-627,638-643,645-650,663-669
3pq4 B:612-627,638-643,645-650,663-669
3pq4 C:612-627,638-643,645-650,663-669
3pq4 A:612-627,638-643,645-650,663-669
2y37 B:213-230,300-306,307-314,344-354
2y37 A:213-230,300-306,307-314,344-354
3jzf B:115-127,154-161,197-203,282-292
3clo C:25-42,43-51,52-60,145-149
1nex D:346-368,692-700,701-707,717-723
1wb2 C:68-80,186-191,200-209,305-309
3bps A:430-438,481-490,518-531,652-660
3bdw B:159-171,171-175,207-213,227-232
3bdw D:159-171,171-175,207-213,227-232
3cdg F:159-171,171-175,206-213,226-232
3cdg K:159-171,171-175,206-213,226-232
1wb3 C:68-80,186-191,199-209,305-309
1wb3 B:68-80,186-191,200-209,305-309