2. d.79.3 L30e-like Bacillus chorismate mutase-like core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest 1xbi d1xbia1 A:10-24,43-51,77-86,101-117 3cma d3cmaf1 F:9-27,45-52,79-88,104-119 1sds d1sdsc_ C:10-24,71-77,77-86,101-116 1sds d1sdsa_ A:10-24,71-77,77-86,101-116 3ccu d3ccuf1 F:9-27,73-79,79-88,104-119 2jnb d2jnba1 A:15-33,52-57,85-94,110-128 3cce d3ccef1 F:9-28,44-53,79-88,104-119 2qa4 d2qa4f1 F:9-27,45-53,79-88,104-119 3ccv d3ccvf1 F:9-27,73-79,79-88,104-119 3ccl d3cclf1 F:9-27,73-79,79-88,104-119 3ccr d3ccrf1 F:9-28,73-79,79-88,104-119 1sds d1sdsc_ C:10-24,43-51,77-86,101-116 3ccs d3ccsf1 F:9-28,73-79,79-88,104-119 3ccr d3ccrf1 F:9-28,45-53,79-88,104-119 1sds d1sdsa_ A:10-24,43-51,77-86,101-116 1ffk d1ffke_ E:9-27,45-53,79-88,104-119 2otl d2otlf1 F:9-27,45-53,79-88,101-119 3cc7 d3cc7f1 F:9-27,45-53,79-88,104-119 1vq4 d1vq4f1 F:9-27,45-53,79-88,101-119 1vq9 d1vq9f1 F:9-27,45-53,79-88,101-119 1qvg d1qvgf_ F:9-27,45-53,79-88,104-119 2qa4 d2qa4f1 F:9-27,72-79,79-88,104-119 3ccs d3ccsf1 F:9-28,45-53,79-88,104-119 3ccu d3ccuf1 F:9-27,45-53,79-88,104-119 3ccl d3cclf1 F:9-27,45-53,79-88,104-119 1q86 d1q86h_ H:9-27,45-53,79-88,101-119 3ccv d3ccvf1 F:9-27,45-53,79-88,104-119 3ccj d3ccjf1 F:9-27,73-79,79-88,104-119 1q81 d1q81h_ H:9-27,45-53,79-88,104-119 1kqs d1kqsf_ F:9-27,45-53,79-88,101-119 1q7y d1q7yh_ H:9-27,45-53,79-88,101-119 1m1k d1m1kh_ H:9-27,45-53,79-88,104-119 1yi2 d1yi2f1 F:9-27,45-53,79-88,101-119 3ccm d3ccmf1 F:9-28,45-53,79-88,104-119 1kd1 d1kd1h_ H:9-27,45-53,79-88,101-119 3ccq d3ccqf1 F:9-28,45-53,79-88,104-119 1yij d1yijf1 F:9-27,45-53,79-88,101-119 1q82 d1q82h_ H:9-27,45-53,79-88,101-119 1yj9 d1yj9f1 F:9-27,45-53,79-88,104-119 3cd6 d3cd6f1 F:9-28,45-53,79-88,104-119 2qex d2qexf1 F:9-27,45-53,79-88,104-119 1k73 d1k73h_ H:9-27,45-53,79-88,101-119 3cpw d3cpwf1 F:9-27,45-53,79-88,101-119 1kc8 d1kc8h_ H:9-27,45-53,79-88,101-119 1n8r d1n8rh_ H:9-27,45-53,79-88,101-119 1k8a d1k8ah_ H:9-27,45-53,79-88,101-119 1yit d1yitf1 F:9-27,45-53,79-88,101-119 1vq8 d1vq8f1 F:9-27,45-53,79-88,101-119 1nji d1njih_ H:9-27,45-53,79-88,101-119 1vq6 d1vq6f1 F:9-27,45-53,79-88,101-119 1qvf d1qvff_ F:9-27,45-53,79-88,101-119 3cme d3cmef1 F:9-28,72-79,79-88,104-119 1vq7 d1vq7f1 F:9-27,45-53,79-88,101-119 1m90 d1m90h_ H:9-27,45-53,79-88,101-119 1vqk d1vqkf1 F:9-27,45-53,79-88,101-119 1k9m d1k9mh_ H:9-27,45-53,79-88,101-119 1jj2 d1jj2f_ F:9-27,45-53,79-88,101-119 3cc2 d3cc2f1 F:9-27,45-53,79-88,101-119 3cme d3cmef1 F:9-28,45-53,79-88,104-119 1yjn d1yjnf1 F:9-27,45-53,79-88,101-119 1s72 d1s72f_ F:9-27,45-53,79-88,101-119 1yhq d1yhqf1 F:9-27,45-53,79-88,101-119 1vq5 d1vq5f1 F:9-27,45-53,79-88,101-119 1sds d1sdsb_ B:10-24,43-51,77-86,101-115 3cc4 d3cc4f1 F:9-28,45-53,79-88,104-119 2otj d2otjf1 F:9-27,45-53,79-88,101-119 1vql d1vqlf1 F:9-27,45-53,79-88,101-119 1vqo d1vqof1 F:9-27,45-53,79-88,101-119 1vqp d1vqpf1 F:9-27,45-53,79-88,101-119 3ccj d3ccjf1 F:9-27,45-53,79-88,104-119 1yjw d1yjwf1 F:9-27,45-53,79-88,104-119 1yj9 d1yj9f1 F:9-27,72-79,79-88,104-119 3cma d3cmaf1 F:9-27,72-78,79-88,104-119 1qvg d1qvgf_ F:9-27,72-79,79-88,104-119 1vqn d1vqnf1 F:9-27,45-53,79-88,101-119 1vqm d1vqmf1 F:9-27,45-53,79-88,104-119 1e7k d1e7kb_ B:15-33,50-59,85-94,110-128 1m1k d1m1kh_ H:9-27,72-79,79-88,104-119 1e7k d1e7ka_ A:15-33,50-59,85-94,110-128 1pxw d1pxwb_ B:17-35,53-61,87-96,109-128 1q81 d1q81h_ H:9-27,72-79,79-88,104-119 2qex d2qexf1 F:9-27,72-79,79-88,104-119 1rlg d1rlgb_ B:8-26,72-78,78-87,103-118 2czw d2czwa1 A:13-31,49-57,83-92,108-124 1pxw d1pxwa_ A:17-35,53-61,87-96,112-128 2hvy d2hvyd1 D:13-31,49-57,83-92,105-124 1q7y d1q7yh_ H:9-27,26-32,79-88,101-119 1rlg d1rlga_ A:8-26,44-52,78-87,103-119 1yjw d1yjwf1 F:9-27,72-79,79-88,104-119 1rlg d1rlgb_ B:8-26,44-52,78-87,103-118 1vq9 d1vq9f1 F:9-27,26-32,79-88,101-119 2ozb d2ozba1 A:15-33,79-85,85-94,110-128 2ozb d2ozbd1 D:15-33,50-59,85-94,110-128 2ale d2alea1 A:13-31,48-57,83-92,110-128 1vqn d1vqnf1 F:9-27,26-32,79-88,101-119 1e7k d1e7kb_ B:15-33,79-85,85-94,110-128 2fc3 d2fc3a1 A:12-30,48-56,82-91,104-126 1e7k d1e7ka_ A:15-33,79-85,85-94,110-128 2ozb d2ozba1 A:15-33,50-59,85-94,110-128 2ozb d2ozbd1 D:15-33,79-85,85-94,110-128 2aif d2aifa1 A:20-38,55-64,90-99,115-130 2aif d2aifa1 A:20-38,39-43,90-99,115-130 1zwz d1zwza1 A:15-33,50-59,85-94,112-128 1zwz d1zwzb1 B:15-33,50-59,85-94,112-128 2jnb d2jnba1 A:15-33,79-83,85-94,110-128 1pxw d1pxwb_ B:17-35,34-40,87-96,109-128 2fc3 d2fc3a1 A:12-30,29-35,82-91,104-126 1zwz d1zwzb1 B:15-33,34-38,85-94,112-128 2ozb d2ozbd1 D:15-33,34-38,85-94,110-128 1zwz d1zwza1 A:15-33,34-38,85-94,112-128 1pxw d1pxwa_ A:17-35,34-40,87-96,112-128 1e7k d1e7ka_ A:15-33,34-38,85-94,110-128 1e7k d1e7kb_ B:15-33,34-38,85-94,110-128 2ale d2alea1 A:13-31,32-36,83-92,110-128 3. c.72.2 MurD-like peptide ligases, catalytic domain has extra strand located between strands 1 and 2 ! Ribokinase-like core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest ! potential superfamily: members of this fold have similar functions but different ATP-binding sites 1gqq d1gqqa3 A:128-144,278-287,289-307,309-320 1j6u d1j6ua3 A:112-128,251-260,263-281,283-294 1e8c d1e8ca3 A:118-134,293-303,304-322,324-335 1p31 d1p31b3 B:128-144,278-287,289-307,309-320 1gqy d1gqyb3 B:128-144,278-287,289-307,309-320 1p3d d1p3da3 A:128-144,278-287,289-307,309-320 1e8c d1e8cb3 B:118-134,293-303,304-322,324-335 1gqy d1gqya3 A:128-144,278-287,289-307,309-320 1p31 d1p31a3 A:128-144,278-287,289-307,309-320 1p3d d1p3db3 B:128-144,278-288,289-307,309-320 1gqq d1gqqb3 B:125-144,278-288,289-307,309-320 1eeh d1eeha3 A:114-130,253-258,265-283,285-296 1o5z d1o5za2 A:47-66,246-255,257-275,279-290 1gg4 d1gg4b4 B:610-626,768-776,779-797,799-810 2uag d2uaga3 A:114-130,252-258,265-283,285-297 2uuo d2uuoa3 A:114-130,252-258,265-283,285-296 3uag d3uaga3 A:114-130,252-258,265-283,285-296 2jfg d2jfga3 A:114-130,252-258,265-283,285-296 2uup d2uupa3 A:114-130,252-258,265-283,285-296 2jff d2jffa3 A:114-130,252-258,265-283,285-296 1gg4 d1gg4a4 A:110-126,268-276,279-297,299-310 4uag d4uaga3 A:114-130,252-258,265-283,285-296 1uag d1uaga3 A:114-130,252-258,265-283,285-296 2jfh d2jfha3 A:114-130,252-258,265-283,285-296 1e0d d1e0da3 A:114-130,252-258,265-283,285-296 1jbw d1jbwa2 A:49-65,246-255,258-280,284-295 2gc6 d2gc6a2 A:49-65,246-255,258-280,284-296 2gca d2gcaa2 A:46-65,246-255,258-280,284-295 1jbv d1jbva2 A:49-65,246-255,258-280,284-296 2gc5 d2gc5a2 A:46-65,246-255,258-280,284-295 1fgs d1fgsa2 A:46-65,246-255,258-280,284-296 2gcb d2gcba2 A:46-65,246-255,258-280,284-295 21. d.41.2 Nicotinate/Quinolinate PRTase N-terminal domain-like alpha/beta-Hammerhead core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids 1qpo d1qpoc2 C:1004-1026,1040-1049,1055-1068,1103-1129 1qpn d1qpnc2 C:1004-1026,1040-1049,1055-1068,1103-1129 1qpq d1qpqc2 C:1004-1026,1040-1049,1055-1068,1103-1129 1qpo d1qpoe2 E:2004-2026,2040-2049,2055-2068,2103-2129 1qpn d1qpne2 E:2004-2026,2040-2049,2055-2068,2103-2129 1qpq d1qpqe2 E:2004-2026,2040-2049,2055-2068,2103-2129 1qpo d1qpof2 F:2504-2526,2540-2549,2555-2568,2603-2629 1qpo d1qpod2 D:1504-1526,1540-1549,1555-1568,1603-1629 1qpq d1qpqb2 B:504-526,540-549,555-568,603-629 1qpo d1qpoa2 A:4-26,40-49,55-68,103-129 1qpn d1qpnf2 F:2504-2526,2540-2549,2555-2568,2603-2629 1qpn d1qpnb2 B:504-526,540-549,555-568,603-629 1qpo d1qpob2 B:504-526,540-549,555-568,603-629 1qpq d1qpqa2 A:4-26,40-49,55-68,103-129 1qpn d1qpna2 A:4-26,40-49,55-68,103-129 1qpr d1qprb2 B:4-26,40-49,55-68,103-129 1qpr d1qprf2 F:4-26,40-49,55-68,103-129 1qpq d1qpqf2 F:2504-2526,2540-2549,2555-2568,2603-2629 1qpn d1qpnd2 D:1504-1526,1540-1549,1555-1568,1603-1629 1qpq d1qpqd2 D:1504-1526,1540-1549,1555-1568,1603-1629 1qpr d1qpre2 E:4-26,40-49,55-68,103-129 1qpr d1qprc2 C:4-26,40-49,55-68,103-129 1qpr d1qpra2 A:4-26,40-49,55-68,103-129 1qpr d1qprd2 D:4-26,40-49,55-68,103-129